Substrates for peptidase S01.269: glutamyl endopeptidase I

Summary Alignment Tree Sequences Sequence features Distribution Structure Literature Substrates Pharma

Peptide and protein substrates that are thought to be physiologically relevant are indicated by P. Peptide and protein substrates that are thought to be pathologically relevant are indicated by D. Peptide and protein substrates that are not physiologically relevant are indicated by N. Synthetic substrates are indicated by S. Click on the symbol to show only physiological, non-physiological or synthetic substrates, or here to display all substrates. How cleavage sites have been identified are indicated by the following evidence codes: NT = N-terminal sequencing, MS = mass spectroscopy, MU = mutation, CS = consensus sequence, LC = liquid chromatography. To see all annotated cleavages for a protein substrate, click on the UniProt Accession.

Substrate	Uniprot	Residue range	Cleavage Site	Cleavage type	Evidence	P4	P3	P2	P1	P1'	P2'	P3'	P4'	Reference	CutDB
(E3-independent) E2 ubiquitin-conjugating enzyme	Q9C0C9		peptide-Glu850+Lys-peptide	N	MS	Pro	Thr	Arg	Glu	Lys	Lys	Phe	Leu	Vidmar et al., 2017
1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase	Q9BV57		peptide-Glu29+Gln-peptide	N	MS	Val	Gly	Leu	Glu	Gln	Leu	Arg	Arg	Vidmar et al., 2017
1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase	Q9BV57		peptide-Glu166+Ala-peptide	N	MS	Asp	His	Phe	Glu	Ala	Arg	Gly	Gln	Vidmar et al., 2017
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3	Q01970		peptide-Glu589+Met-peptide	N	MS	Ala	Thr	Glu	Glu	Met	Ser	Thr	Leu	Vidmar et al., 2017
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3	Q01970		peptide-Glu1070+Val-peptide	N	MS	Arg	Leu	Arg	Glu	Val	Val	Leu	Asp	Vidmar et al., 2017
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3	Q01970		peptide-Glu214+Arg-peptide	N	MS	Glu	Ile	Phe	Glu	Arg	Phe	Leu	Asn	Vidmar et al., 2017
10 kDa chaperonin	P0A6F9	1-97	peptide-Glu18+Thr-peptide	N	MS	Lys	Glu	Val	Glu	Thr	Lys	Ser	Ala	Timmer et al., 2009
10 kDa chaperonin	P0A6F9	1-97	peptide-Glu16+Val-peptide	N	MS	Lys	Arg	Lys	Glu	Val	Glu	Thr	Lys	Timmer et al., 2009
10 kDa heat shock protein, mitochondrial	P61604	2-102	peptide-Glu75+Tyr-peptide	N	MS	Leu	Leu	Pro	Glu	Tyr	Gly	Gly	Thr	Schilling & Overall, 2008
116 kDa U5 small nuclear ribonucleoprotein component	Q15029	569-581	GNEE+AQIFRPLK	N	MS	Gly	Asn	Glu	Glu	Ala	Gln	Ile	Phe	Schilling & Overall, 2008
116 kDa U5 small nuclear ribonucleoprotein component	Q15029	790-803	ILD+AVVAQEPLHR	N	MS	-	Ile	Leu	Asp	Ala	Val	Val	Ala	Schilling & Overall, 2008
14 kDa phosphohistidine phosphatase	Q9NRX4		peptide-Glu107+Lys-peptide	N	MS	Ile	Ser	Thr	Glu	Lys	Ile	Lys	Ala	Vidmar et al., 2017
14-3-3 protein beta/alpha	P31946		peptide-Glu7+Leu-peptide	N	MS	Asp	Lys	Ser	Glu	Leu	Val	Gln	Lys	Vidmar et al., 2017
14-3-3 protein beta/alpha	P31946		peptide-Gly55+Ala-peptide	N	MS	Asn	Val	Val	Gly	Ala	Arg	Arg	Ser	Vidmar et al., 2017
14-3-3 protein beta/alpha	P31946		peptide-Glu115+Ser-peptide	N	MS	Thr	Gln	Pro	Glu	Ser	Lys	Val	Phe	Vidmar et al., 2017
14-3-3 protein beta/alpha	P31946		peptide-Glu33+Gln-peptide	N	MS	Ala	Val	Thr	Glu	Gln	Gly	His	Glu	Vidmar et al., 2017
14-3-3 protein beta/alpha	P31946		peptide-Glu75+Lys-peptide	N	MS	Glu	Arg	Asn	Glu	Lys	Lys	Gln	Gln	Vidmar et al., 2017
14-3-3 protein beta/alpha	P31946		peptide-Glu16+Gln-peptide	N	MS	Lys	Leu	Ala	Glu	Gln	Ala	Glu	Arg	Vidmar et al., 2017
14-3-3 protein epsilon	P62258	1-255	peptide-Glu205+Leu-peptide	N	MS	Ala	Ile	Ala	Glu	Leu	Asp	Thr	Leu	Schilling & Overall, 2008
14-3-3 protein epsilon	P62258		peptide-Glu183+Ile-peptide	N	MS	Phe	Tyr	Tyr	Glu	Ile	Leu	Asn	Ser	Vidmar et al., 2017
14-3-3 protein epsilon	P62258		peptide-Glu25+Ser-peptide	N	MS	Glu	Met	Val	Glu	Ser	Met	Lys	Lys	Vidmar et al., 2017
14-3-3 protein epsilon	P62258		peptide-Glu15+Gln-peptide	N	MS	Lys	Leu	Ala	Glu	Gln	Ala	Glu	Arg	Vidmar et al., 2017
14-3-3 protein epsilon	P62258		peptide-Glu134+Phe-peptide	N	MS	Tyr	Leu	Ala	Glu	Phe	Ala	Thr	Gly	Vidmar et al., 2017
14-3-3 protein epsilon	P62258		peptide-Glu84+Tyr-peptide	N	MS	Met	Ile	Arg	Glu	Tyr	Arg	Gln	Met	Vidmar et al., 2017
14-3-3 protein eta	Q04917	2-246	peptide-Glu207+Leu-peptide	N	MS	Ala	Ile	Ala	Glu	Leu	Asp	Thr	Leu	Schilling & Overall, 2008
14-3-3 protein eta	Q04917		peptide-Glu5+Gln-peptide	N	MS	Gly	Asp	Arg	Glu	Gln	Leu	Leu	Gln	Vidmar et al., 2017
14-3-3 protein eta	Q04917		peptide-Glu191+Gln-peptide	N	MS	Asn	Ala	Pro	Glu	Gln	Ala	Cys	Leu	Vidmar et al., 2017
14-3-3 protein eta	Q04917		peptide-Glu136+Val-peptide	N	MS	Tyr	Leu	Ala	Glu	Val	Ala	Ser	Gly	Vidmar et al., 2017
14-3-3 protein eta	Q04917		peptide-Glu15+Gln-peptide	N	MS	Arg	Leu	Ala	Glu	Gln	Ala	Glu	Arg	Vidmar et al., 2017
14-3-3 protein gamma	P61981		peptide-Glu207+Leu-peptide	N	MS	Ala	Ile	Ala	Glu	Leu	Asp	Thr	Leu	Vidmar et al., 2017
14-3-3 protein gamma	P61981		peptide-Glu136+Val-peptide	N	MS	Tyr	Leu	Ala	Glu	Val	Ala	Thr	Gly	Vidmar et al., 2017
14-3-3 protein gamma	P61981		peptide-Glu5+Gln-peptide	N	MS	Val	Asp	Arg	Glu	Gln	Leu	Val	Gln	Vidmar et al., 2017
14-3-3 protein sigma	P31947		peptide-Glu115+Ser-peptide	N	MS	Gly	Asp	Ala	Glu	Ser	Arg	Val	Phe	Vidmar et al., 2017
14-3-3 protein sigma	P31947		peptide-Glu91+Leu-peptide	N	MS	Val	Glu	Thr	Glu	Leu	Gln	Gly	Val	Vidmar et al., 2017
14-3-3 protein sigma	P31947		peptide-Glu83+Tyr-peptide	N	MS	Glu	Val	Arg	Glu	Tyr	Arg	Glu	Lys	Vidmar et al., 2017
14-3-3 protein sigma	P31947		peptide-Glu133+Val-peptide	N	MS	Tyr	Leu	Ala	Glu	Val	Ala	Thr	Gly	Vidmar et al., 2017
14-3-3 protein theta	P27348		peptide-Glu99+Leu-peptide	N	MS	Thr	Val	Leu	Glu	Leu	Leu	Asp	Lys	Vidmar et al., 2017
14-3-3 protein theta	P27348		peptide-Glu186+Leu-peptide	N	MS	Asn	Asn	Pro	Glu	Leu	Ala	Cys	Thr	Vidmar et al., 2017
14-3-3 protein theta	P27348		peptide-Glu89+Leu-peptide	N	MS	Val	Glu	Ser	Glu	Leu	Arg	Ser	Ile	Vidmar et al., 2017
14-3-3 protein theta	P27348		peptide-Glu14+Gln-peptide	N	MS	Lys	Leu	Ala	Glu	Gln	Ala	Glu	Arg	Vidmar et al., 2017
14-3-3 protein theta	P27348		peptide-Glu131+Val-peptide	N	MS	Tyr	Leu	Ala	Glu	Val	Ala	Cys	Gly	Vidmar et al., 2017
14-3-3 protein theta	P27348		peptide-Glu17+Arg-peptide	N	MS	Glu	Gln	Ala	Glu	Arg	Tyr	Asp	Asp	Vidmar et al., 2017
14-3-3 protein theta	P27348		peptide-Glu5+Leu-peptide	N	MS	Glu	Lys	Thr	Glu	Leu	Ile	Gln	Lys	Vidmar et al., 2017
14-3-3 protein zeta/delta	P63104		peptide-Glu14+Gln-peptide	N	MS	Lys	Leu	Ala	Glu	Gln	Ala	Glu	Arg	Vidmar et al., 2017
14-3-3 protein zeta/delta	P63104		peptide-Glu40+Arg-peptide	N	MS	Ser	Asn	Glu	Glu	Arg	Asn	Leu	Leu	Vidmar et al., 2017
14-3-3 protein zeta/delta	P63104		peptide-Glu5+Leu-peptide	N	MS	Asp	Lys	Asn	Glu	Leu	Val	Gln	Lys	Vidmar et al., 2017
14-3-3 protein zeta/delta	P63104		peptide-Glu131+Val-peptide	N	MS	Tyr	Leu	Ala	Glu	Val	Ala	Ala	Gly	Vidmar et al., 2017
14-3-3 protein zeta/delta	P63104		peptide-Glu113+Ser-peptide	N	MS	Ser	Gln	Ala	Glu	Ser	Lys	Val	Phe	Vidmar et al., 2017
14-3-3 protein zeta/delta	P63104		peptide-Asp21+Met-peptide	N	MS	Arg	Tyr	Asp	Asp	Met	Ala	Ala	Cys	Vidmar et al., 2017
14-3-3 protein zeta/delta	P63104		peptide-Gly53+Ala-peptide	N	MS	Asn	Val	Val	Gly	Ala	Arg	Arg	Ser	Vidmar et al., 2017
14-3-3 protein zeta/delta	P63104		peptide-Glu17+Arg-peptide	N	MS	Glu	Gln	Ala	Glu	Arg	Tyr	Asp	Asp	Vidmar et al., 2017
14-3-3 protein zeta/delta	P63104		peptide-Glu87+Thr-peptide	N	MS	Glu	Lys	Ile	Glu	Thr	Glu	Leu	Arg	Vidmar et al., 2017
14-3-3 protein zeta/delta	P63104		peptide-Glu89+Leu-peptide	N	MS	Ile	Glu	Thr	Glu	Leu	Arg	Asp	Ile	Vidmar et al., 2017
14-3-3 protein zeta/delta	P63104		peptide-Glu202+Leu-peptide	N	MS	Ala	Ile	Ala	Glu	Leu	Asp	Thr	Leu	Vidmar et al., 2017
14-3-3 protein zeta/delta	P63104		peptide-Asp213+Ser-peptide	N	MS	Ser	Tyr	Lys	Asp	Ser	Thr	Leu	Ile	Vidmar et al., 2017
14-3-3 protein zeta/delta	P63104		peptide-Glu102+Lys-peptide	N	MS	Ser	Leu	Leu	Glu	Lys	Phe	Leu	Ile	Vidmar et al., 2017
14-3-3 protein zeta/delta	P63104		peptide-Glu186+Lys-peptide	N	MS	Asn	Ser	Pro	Glu	Lys	Ala	Cys	Ser	Vidmar et al., 2017
14-3-3 protein zeta/delta	P63104		peptide-Glu70+Gly-peptide	N	MS	Gln	Lys	Thr	Glu	Gly	Ala	Glu	Lys	Vidmar et al., 2017
14-3-3 protein zeta/delta	P63104		peptide-Glu209+Ser-peptide	N	MS	Leu	Ser	Glu	Glu	Ser	Tyr	Lys	Asp	Vidmar et al., 2017
14-3-3 protein zeta/delta	P63104		peptide-Glu81+Tyr-peptide	N	MS	Met	Ala	Arg	Glu	Tyr	Arg	Glu	Lys	Vidmar et al., 2017
182 kDa tankyrase-1-binding protein	Q9C0C2		peptide-Glu511+Ala-peptide	N	MS	Glu	Ala	Ala	Glu	Ala	Gly	Asn	Leu	Vidmar et al., 2017
182 kDa tankyrase-1-binding protein	Q9C0C2		peptide-Glu1099+Ala-peptide	N	MS	Pro	Gln	Arg	Glu	Ala	Ala	Phe	Ser	Vidmar et al., 2017
182 kDa tankyrase-1-binding protein	Q9C0C2		peptide-Glu576+Gly-peptide	N	MS	Pro	Thr	Thr	Glu	Gly	Thr	Pro	Gly	Vidmar et al., 2017
182 kDa tankyrase-1-binding protein	Q9C0C2		peptide-Glu1303+Leu-peptide	N	MS	Glu	Ser	Lys	Glu	Leu	Gly	Val	Gly	Vidmar et al., 2017
182 kDa tankyrase-1-binding protein	Q9C0C2		peptide-Glu396+Leu-peptide	N	MS	Glu	Val	Gly	Glu	Leu	Leu	Asp	Leu	Vidmar et al., 2017
182 kDa tankyrase-1-binding protein	Q9C0C2		peptide-Glu591+Ser-peptide	N	MS	Glu	Arg	Tyr	Glu	Ser	Gln	Glu	Pro	Vidmar et al., 2017
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase	P62707	2-250	peptide-Glu235+Ile-peptide	N	MS	Asn	Ala	Asp	Glu	Ile	Ala	Ala	Lys	Timmer et al., 2009
2,4-dienoyl-CoA reductase, mitochondrial	Q16698		peptide-Glu310+Phe-peptide	N	MS	Ile	Ser	Gly	Glu	Phe	Asn	Asp	Leu	Vidmar et al., 2017
2,4-dienoyl-CoA reductase, mitochondrial	Q16698		peptide-Glu261+Met-peptide	N	MS	Phe	Glu	Lys	Glu	Met	Ile	Gly	Arg	Vidmar et al., 2017
2-amino-3-ketobutyrate coenzyme A ligase, mitochondrial precursor	O75600	244-265	peptide-Glu248+Leu-peptide	N	MS	Gly	Thr	Asp	Glu	Leu	Leu	Gly	Val	Schilling & Overall, 2008
26S proteasome non-ATPase regulatory subunit 1	Q99460		peptide-Glu896+Thr-peptide	N	MS	Thr	Met	Pro	Glu	Thr	Cys	Arg	Tyr	Vidmar et al., 2017
26S proteasome non-ATPase regulatory subunit 1	Q99460		peptide-Glu122+Lys-peptide	N	MS	Pro	Glu	Gly	Glu	Lys	Lys	Pro	Ile	Vidmar et al., 2017
26S proteasome non-ATPase regulatory subunit 11	O00231	2-422	peptide-Glu362+Arg-peptide	N	MS	Ala	Asp	Val	Glu	Arg	Lys	Leu	Ser	Schilling & Overall, 2008
26S proteasome non-ATPase regulatory subunit 12	O00232		peptide-Glu17+Val-peptide	N	MS	Val	Lys	Met	Glu	Val	Asp	Tyr	Ser	Vidmar et al., 2017
26S proteasome non-ATPase regulatory subunit 14	O00487		peptide-Glu268+Gln-peptide	N	MS	Met	Thr	Pro	Glu	Gln	Leu	Ala	Ile	Vidmar et al., 2017
26S proteasome non-ATPase regulatory subunit 14	O00487		peptide-Glu250+Leu-peptide	N	MS	Glu	Met	Leu	Glu	Leu	Ala	Lys	Asn	Vidmar et al., 2017
26S proteasome non-ATPase regulatory subunit 2	Q13200	1-908	peptide-Glu878+Arg-peptide	N	MS	Ala	His	Gly	Glu	Arg	Ala	Glu	Leu	Schilling & Overall, 2008
26S proteasome non-ATPase regulatory subunit 2	Q13200		peptide-Leu173+Asp-peptide	N	MS	Trp	Gln	Glu	Leu	Asp	Asp	Ala	Glu	Vidmar et al., 2017
26S proteasome non-ATPase regulatory subunit 2	Q13200		peptide-Glu169+Trp-peptide	N	MS	Val	Ala	Lys	Glu	Trp	Gln	Glu	Leu	Vidmar et al., 2017
26S proteasome non-ATPase regulatory subunit 2	Q13200		peptide-Glu336+Leu-peptide	N	MS	Leu	Ala	Arg	Glu	Leu	Asp	Ile	Met	Vidmar et al., 2017
26S proteasome non-ATPase regulatory subunit 2	Q13200		peptide-Glu61+Arg-peptide	N	MS	Met	Leu	Val	Glu	Arg	Leu	Gly	Glu	Vidmar et al., 2017
26S proteasome non-ATPase regulatory subunit 2	Q13200		peptide-Glu172+Leu-peptide	N	MS	Glu	Trp	Gln	Glu	Leu	Asp	Asp	Ala	Vidmar et al., 2017
26S proteasome non-ATPase regulatory subunit 2	Q13200		peptide-Glu177+Lys-peptide	N	MS	Asp	Asp	Ala	Glu	Lys	Val	Gln	Arg	Vidmar et al., 2017
26S proteasome non-ATPase regulatory subunit 2	Q13200		peptide-Glu190+Ile-peptide	N	MS	Leu	Val	Lys	Glu	Ile	Val	Pro	Tyr	Vidmar et al., 2017
26S proteasome non-ATPase regulatory subunit 2	Q13200		peptide-Glu44+Leu-peptide	N	MS	Lys	Glu	Gln	Glu	Leu	Ser	Glu	Glu	Vidmar et al., 2017
26S proteasome non-ATPase regulatory subunit 2	Q13200		peptide-Glu157+Tyr-peptide	N	MS	Trp	Gly	His	Glu	Tyr	Val	Arg	His	Vidmar et al., 2017
26S proteasome non-ATPase regulatory subunit 2	Q13200		peptide-Glu895+Gly-peptide	N	MS	Pro	Ile	Leu	Glu	Gly	Phe	Val	Ile	Vidmar et al., 2017
26S proteasome non-ATPase regulatory subunit 3	O43242	216-228	VYE+FLDKLDVVR	N	MS	-	Val	Tyr	Glu	Phe	Leu	Asp	Lys	Schilling & Overall, 2008
26S proteasome non-ATPase regulatory subunit 4	P55036		peptide-Glu269+Phe-peptide	N	MS	Ser	Gln	Gln	Glu	Phe	Gly	Arg	Thr	Vidmar et al., 2017
26S proteasome non-ATPase regulatory subunit 4	P55036		peptide-Glu350+Ala-peptide	N	MS	Pro	Asn	Asn	Glu	Ala	Ile	Arg	Asn	Vidmar et al., 2017
26S proteasome non-ATPase regulatory subunit 7	P51665		peptide-Glu295+Ser-peptide	N	MS	Glu	Lys	Glu	Glu	Ser	Lys	Lys	Asp	Vidmar et al., 2017
26S proteasome non-ATPase regulatory subunit 7	P51665		peptide-Glu143+Val-peptide	N	MS	Ser	Val	Glu	Glu	Val	His	Asp	Asp	Vidmar et al., 2017
26S proteasome non-ATPase regulatory subunit 9	O00233		peptide-Glu161+Phe-peptide	N	MS	Glu	Ile	Val	Glu	Phe	Gly	Ser	Val	Vidmar et al., 2017
26S proteasome non-ATPase regulatory subunit 9	O00233		peptide-Glu184+Gly-peptide	N	MS	Gln	His	Ser	Glu	Gly	Lys	Pro	Leu	Vidmar et al., 2017
26S proteasome non-ATPase regulatory subunit 9	O00233		peptide-Glu118+Ala-peptide	N	MS	Ala	His	Lys	Glu	Ala	Met	Ser	Arg	Vidmar et al., 2017
26S proteasome non-ATPase regulatory subunit 9	O00233		peptide-Glu45+Ser-peptide	N	MS	Asp	Val	Leu	Glu	Ser	Gln	Lys	Gly	Vidmar et al., 2017
26S proteasome regulatory subunit 10B	P62333		peptide-Glu365+Asp-peptide	N	MS	Val	Val	Gln	Glu	Asp	Phe	Met	Lys	Vidmar et al., 2017
26S proteasome regulatory subunit 10B	P62333		peptide-Glu134+Ile-peptide	N	MS	Ser	Tyr	Ser	Glu	Ile	Gly	Gly	Leu	Vidmar et al., 2017
26S proteasome regulatory subunit 4	P62191		peptide-Glu199+Ser-peptide	N	MS	Glu	Ile	Lys	Glu	Ser	Val	Glu	Leu	Vidmar et al., 2017
26S proteasome regulatory subunit 4	P62191		peptide-Glu286+Ile-peptide	N	MS	Phe	Ile	Asp	Glu	Ile	Asp	Ala	Ile	Vidmar et al., 2017
26S proteasome regulatory subunit 4	P62191		peptide-Glu254+Leu-peptide	N	MS	Val	Gly	Ser	Glu	Leu	Ile	Gln	Lys	Vidmar et al., 2017
26S proteasome regulatory subunit 4	P62191		peptide-Glu177+Lys-peptide	N	MS	Met	Lys	Val	Glu	Lys	Ala	Pro	Gln	Vidmar et al., 2017
26S proteasome regulatory subunit 6A	P17980		peptide-Glu176+Val-peptide	N	MS	Lys	Ala	Met	Glu	Val	Asp	Glu	Arg	Vidmar et al., 2017
26S proteasome regulatory subunit 6A	P17980		peptide-Glu287+Leu-peptide	N	MS	Phe	Ile	Asp	Glu	Leu	Asp	Ala	Ile	Vidmar et al., 2017
26S proteasome regulatory subunit 6A	P17980		peptide-Glu40+Ile-peptide	N	MS	Ser	Thr	Glu	Glu	Ile	Ile	Gln	Arg	Vidmar et al., 2017
26S proteasome regulatory subunit 6B	P43686		peptide-Leu253+Ala-peptide	N	MS	Val	Phe	Arg	Leu	Ala	Lys	Glu	Asn	Vidmar et al., 2017
26S proteasome regulatory subunit 6B	P43686		peptide-Glu400+Lys-peptide	N	MS	Lys	Asp	Phe	Glu	Lys	Ala	Tyr	Lys	Vidmar et al., 2017
26S proteasome regulatory subunit 8	P62195		peptide-Glu30+Leu-peptide	N	MS	Lys	Ile	Glu	Glu	Leu	Gln	Leu	Ile	Vidmar et al., 2017
26S proteasome regulatory subunit 8	P62195		peptide-Glu149+Met-peptide	N	MS	Ser	Thr	Tyr	Glu	Met	Ile	Gly	Gly	Vidmar et al., 2017
26S proteasome regulatory subunit 8	P62195		peptide-Glu51+Leu-peptide	N	MS	Gln	Arg	Asn	Glu	Leu	Asn	Ala	Lys	Vidmar et al., 2017
28 kDa heat- and acid-stable phosphoprotein	Q13442		peptide-Glu160+Arg-peptide	N	MS	Lys	Glu	Glu	Glu	Arg	Lys	Ala	Lys	Vidmar et al., 2017
28 kDa heat- and acid-stable phosphoprotein	Q13442		peptide-Asp139+Leu-peptide	N	MS	Ala	Lys	Ala	Asp	Leu	Ala	Arg	Leu	Vidmar et al., 2017
28S ribosomal protein S26, mitochondrial	Q9BYN8		peptide-Glu92+Arg-peptide	N	MS	Val	Leu	Ala	Glu	Arg	Lys	Ala	Leu	Vidmar et al., 2017
30S ribosomal protein S1	P0AG67	1-557	Met-Thr+Ser-peptide	N	MS	-	Met	Thr	Glu	Ser	Phe	Ala	Gln	Timmer et al., 2009
30S ribosomal protein S1	P0AG67	1-557	peptide-Glu15+Ile-peptide	N	MS	Ser	Leu	Lys	Glu	Ile	Glu	Thr	Arg	Timmer et al., 2009
30S ribosomal protein S1	P0AG67	1-557	peptide-Glu175+Ser-peptide	N	MS	Ala	Val	Ile	Glu	Ser	Glu	Asn	Ser	Timmer et al., 2009
30S ribosomal protein S11	P0A7R9	2-129	peptide-Glu83+Val-peptide	N	MS	Lys	Asn	Leu	Glu	Val	Met	Val	Lys	Timmer et al., 2009
30S ribosomal protein S12	P0A7S3	2-124	peptide-Glu76+His-peptide	N	MS	Asn	Leu	Gln	Glu	His	Ser	Val	Ile	Timmer et al., 2009
30S ribosomal protein S15	P0ADZ4	2-89	peptide-Glu6+Ala-peptide	N	MS	Leu	Ser	Thr	Glu	Ala	Thr	Ala	Lys	Timmer et al., 2009
30S ribosomal protein S18	P0A7T7	2-75	peptide-Glu20+Ile-peptide	N	MS	Gly	Val	Gln	Glu	Ile	Asp	Tyr	Lys	Timmer et al., 2009
30S ribosomal protein S3	P0A7V3	2-233	peptide-Glu110+Leu-peptide	N	MS	Arg	Lys	Pro	Glu	Leu	Asp	Ala	Lys	Timmer et al., 2009
30S ribosomal protein S3	P0A7V3	2-233	peptide-Glu28+Phe-peptide	N	MS	Asn	Thr	Lys	Glu	Phe	Ala	Asp	Asn	Timmer et al., 2009
30S ribosomal protein S3	P0A7V3	2-233	peptide-Glu46+Leu-peptide	N	MS	Leu	Thr	Lys	Glu	Leu	Ala	Lys	Ala	Timmer et al., 2009
30S ribosomal protein S5	P0A7W1	2-167	peptide-Glu116+Val-peptide	N	MS	Ala	Val	Leu	Glu	Val	Ala	Gly	Val	Timmer et al., 2009
30S ribosomal protein S5	P0A7W1	2-167	peptide-Glu10+Leu-peptide	N	MS	Gln	Ala	Gly	Glu	Leu	Gln	Glu	Lys	Timmer et al., 2009
30S ribosomal protein S5	P0A7W1	2-167	peptide-Glu101+Gly-peptide	N	MS	Pro	Ala	Ser	Glu	Gly	Thr	Gly	Ile	Timmer et al., 2009
30S ribosomal protein S6	P02358	1-135	peptide-Glu5+Ile-peptide	N	MS	Arg	His	Tyr	Glu	Ile	Val	Phe	Met	Timmer et al., 2009
39S ribosomal protein L12, mitochondrial	P52815		peptide-Glu148+Ile-peptide	N	MS	Leu	Ile	Lys	Glu	Ile	Lys	Asn	Tyr	Vidmar et al., 2017
39S ribosomal protein L12, mitochondrial	P52815		peptide-Glu126+Arg-peptide	N	MS	Ile	Ala	Lys	Glu	Arg	Thr	His	Phe	Vidmar et al., 2017
39S ribosomal protein L12, mitochondrial	P52815		peptide-Glu84+Leu-peptide	N	MS	Asp	Leu	Asn	Glu	Leu	Leu	Lys	Lys	Vidmar et al., 2017
39S ribosomal protein L12, mitochondrial precursor	P52815	46-198	peptide-Glu166+Ser-peptide	N	MS	Lys	Leu	Val	Glu	Ser	Leu	Pro	Gln	Schilling & Overall, 2008
39S ribosomal protein L18, mitochondrial	Q9H0U6		peptide-Leu24+Ser-peptide	N	MS	Phe	Ala	Ala	Leu	Ser	Thr	Ser	Ser	Vidmar et al., 2017
39S ribosomal protein L20, mitochondrial	Q9BYC9		peptide-Glu139+Gly-peptide	N	MS	Lys	Glu	Pro	Glu	Gly	Ile	Phe	Ser	Vidmar et al., 2017
39S ribosomal protein L28, mitochondrial	Q13084		peptide-Glu233+Leu-peptide	N	MS	Tyr	Val	Ala	Glu	Leu	Ile	Gln	Gln	Vidmar et al., 2017
39S ribosomal protein L39, mitochondrial	Q9NYK5		peptide-Glu51+Lys-peptide	N	MS	Phe	Asn	Lys	Glu	Lys	Ala	Arg	Gln	Vidmar et al., 2017
39S ribosomal protein L41, mitochondrial	Q8IXM3		peptide-Glu124+Gly-peptide	N	MS	Pro	Thr	Gln	Glu	Gly	Lys	Leu	Phe	Vidmar et al., 2017
4-trimethylaminobutyraldehyde dehydrogenase	P49189		peptide-Glu337+Arg-peptide	N	MS	Pro	His	Leu	Glu	Arg	Val	Leu	Gly	Vidmar et al., 2017
4-trimethylaminobutyraldehyde dehydrogenase	P49189		peptide-Glu323+Asp-peptide	N	MS	Pro	Leu	Leu	Glu	Asp	Thr	Arg	Met	Vidmar et al., 2017
40S ribosomal protein S10	P46783		peptide-Glu34+Leu-peptide	N	MS	Lys	His	Pro	Glu	Leu	Ala	Asp	Lys	Vidmar et al., 2017
40S ribosomal protein S10	P46783		peptide-Asp81+Tyr-peptide	N	MS	Tyr	Leu	Arg	Asp	Tyr	Leu	His	Leu	Vidmar et al., 2017
40S ribosomal protein S10	P46783		peptide-Glu100+Thr-peptide	N	MS	Ser	Arg	Pro	Glu	Thr	Gly	Arg	Pro	Vidmar et al., 2017
40S ribosomal protein S10	P46783		peptide-Glu121+Ala-peptide	N	MS	Thr	Arg	Gly	Glu	Ala	Asp	Arg	Asp	Vidmar et al., 2017
40S ribosomal protein S10	P46783		peptide-Glu110+Gly-peptide	N	MS	Lys	Gly	Leu	Glu	Gly	Glu	Arg	Pro	Vidmar et al., 2017
40S ribosomal protein S11	P62280		peptide-Glu7+Arg-peptide	N	MS	Ile	Gln	Thr	Glu	Arg	Ala	Tyr	Gln	Vidmar et al., 2017
40S ribosomal protein S12	P25398		peptide-Glu37+Ala-peptide	N	MS	Gly	Ile	Arg	Glu	Ala	Ala	Lys	Ala	Vidmar et al., 2017
40S ribosomal protein S12	P25398		peptide-Glu97+Gly-peptide	N	MS	Ile	Asp	Arg	Glu	Gly	Lys	Pro	Arg	Vidmar et al., 2017
40S ribosomal protein S12	P25398		peptide-Glu71+His-peptide	N	MS	Leu	Cys	Ala	Glu	His	Gln	Ile	Asn	Vidmar et al., 2017
40S ribosomal protein S12	P25398		peptide-Glu20+Val-peptide	N	MS	Ala	Leu	Gln	Glu	Val	Leu	Lys	Thr	Vidmar et al., 2017
40S ribosomal protein S14	P62263	86-96	E+LGITALHIK	N	MS	-	-	-	Glu	Leu	Gly	Ile	Thr	Schilling & Overall, 2008
40S ribosomal protein S14	P62263	66-84	DE+SSPYAAMLAAQDVAQR	N	MS	-	-	Asp	Glu	Ser	Ser	Pro	Tyr	Schilling & Overall, 2008
40S ribosomal protein S14	P62263		peptide-Glu51+Thr-peptide	N	MS	Ser	Gly	Lys	Glu	Thr	Ile	Cys	Arg	Vidmar et al., 2017
40S ribosomal protein S15	P62841	108-127	PEMIGHYLGE+FSITYKPVK	N	MS	Tyr	Leu	Gly	Glu	Phe	Ser	Ile	Thr	Schilling & Overall, 2008
40S ribosomal protein S15	P62841	2-145	peptide-Glu106+Ile-peptide	N	MS	Asn	Gln	Val	Glu	Ile	Lys	Pro	Glu	Schilling & Overall, 2008
40S ribosomal protein S15	P62841		peptide-Gly129+Arg-peptide	N	MS	Val	Lys	His	Gly	Arg	Pro	Gly	Ile	Vidmar et al., 2017
40S ribosomal protein S15	P62841		peptide-Glu88+Met-peptide	N	MS	Ile	Leu	Pro	Glu	Met	Val	Gly	Ser	Vidmar et al., 2017
40S ribosomal protein S16	P62249		peptide-Glu128+Ser-peptide	N	MS	Arg	Arg	Cys	Glu	Ser	Lys	Lys	Phe	Vidmar et al., 2017
40S ribosomal protein S17	P08708	107-129	peptide-Asp110+Phe-peptide	N	MS	-	Leu	Leu	Asp	Phe	Gly	Ser	Leu	Schilling & Overall, 2008
40S ribosomal protein S17	P08708		peptide-Glu94+Ile-peptide	N	MS	Leu	Asp	Gln	Glu	Ile	Ile	Glu	Val	Vidmar et al., 2017
40S ribosomal protein S17	P08708		peptide-Glu18+Lys-peptide	N	MS	Val	Ile	Ile	Glu	Lys	Tyr	Tyr	Thr	Vidmar et al., 2017
40S ribosomal protein S17	P08708		peptide-Glu104+Met-peptide	N	MS	Asp	Thr	Lys	Glu	Met	Leu	Lys	Leu	Vidmar et al., 2017
40S ribosomal protein S17	P08708		peptide-Glu87+Val-peptide	N	MS	Tyr	Val	Pro	Glu	Val	Ser	Ala	Leu	Vidmar et al., 2017
40S ribosomal protein S19	P39019		peptide-Glu114+Lys-peptide	N	MS	Lys	Met	Val	Glu	Lys	Asp	Gln	Asp	Vidmar et al., 2017
40S ribosomal protein S19	P39019		peptide-Glu108+Gly-peptide	N	MS	Gln	Ala	Leu	Glu	Gly	Leu	Lys	Met	Vidmar et al., 2017
40S ribosomal protein S20	P60866		peptide-Glu33+Lys-peptide	N	MS	Lys	Ser	Leu	Glu	Lys	Val	Cys	Ala	Vidmar et al., 2017
40S ribosomal protein S25	P62851		peptide-Glu61+Val-peptide	N	MS	Leu	Cys	Lys	Glu	Val	Pro	Asn	Tyr	Vidmar et al., 2017
40S ribosomal protein S26	P62854		peptide-Glu90+Ala-peptide	N	MS	Arg	Ser	Arg	Glu	Ala	Arg	Lys	Asp	Vidmar et al., 2017
40S ribosomal protein S3	P23396		peptide-Glu225+Gln-peptide	N	MS	Pro	Ile	Ser	Glu	Gln	Lys	Gly	Gly	Vidmar et al., 2017
40S ribosomal protein S3	P23396		peptide-Glu216+Ile-peptide	N	MS	Pro	Lys	Asp	Glu	Ile	Leu	Pro	Thr	Vidmar et al., 2017
40S ribosomal protein S3a	P61247		peptide-Glu183+Val-peptide	N	MS	Asp	Leu	Lys	Glu	Val	Val	Asn	Lys	Vidmar et al., 2017
40S ribosomal protein S3a	P61247		peptide-Glu251+Arg-peptide	N	MS	Ala	Lys	Val	Glu	Arg	Ala	Asp	Gly	Vidmar et al., 2017
40S ribosomal protein S3a	P61247		peptide-Glu230+Leu-peptide	N	MS	Lys	Leu	Met	Glu	Leu	His	Gly	Glu	Vidmar et al., 2017
40S ribosomal protein S3a	P61247		peptide-Glu198+Lys-peptide	N	MS	Lys	Asp	Ile	Glu	Lys	Ala	Cys	Gln	Vidmar et al., 2017
40S ribosomal protein S3a	P61247		peptide-Glu234+Gly-peptide	N	MS	Leu	His	Gly	Glu	Gly	Ser	Ser	Ser	Vidmar et al., 2017
40S ribosomal protein S5	P46782	167-182	TIAE+CLADELINAAK	N	MS	Thr	Ile	Ala	Glu	Cys	Leu	Ala	Asp	Schilling & Overall, 2008
40S ribosomal protein S5	P46782		peptide-Glu195+Leu-peptide	N	MS	Lys	Lys	Asp	Glu	Leu	Glu	Arg	Val	Vidmar et al., 2017
40S ribosomal protein S6	P62753	31-46	MATE+VAADALGEEWK	N	MS	Met	Ala	Thr	Glu	Val	Ala	Ala	Asp	Schilling & Overall, 2008
40S ribosomal protein S6	P62753		peptide-Glu208+Tyr-peptide	N	MS	Glu	Ala	Ala	Glu	Tyr	Ala	Lys	Leu	Vidmar et al., 2017
40S ribosomal protein S7	P62081		peptide-Glu31+Met-peptide	N	MS	Leu	Glu	Leu	Glu	Met	Asn	Ser	Asp	Vidmar et al., 2017
40S ribosomal protein S7	P62081		peptide-Glu29+Leu-peptide	N	MS	Ala	Leu	Leu	Glu	Leu	Glu	Met	Asn	Vidmar et al., 2017
40S ribosomal protein S8	P62241		peptide-Glu196+Phe-peptide	N	MS	Lys	Glu	Leu	Glu	Phe	Tyr	Leu	Arg	Vidmar et al., 2017
40S ribosomal protein S8	P62241		peptide-Glu135+Ile-peptide	N	MS	Glu	Glu	Glu	Glu	Ile	Leu	Asn	Lys	Vidmar et al., 2017
40S ribosomal protein S9	P46781		peptide-Gly166+Gly-peptide	N	MS	Ser	Pro	Tyr	Gly	Gly	Gly	Arg	Pro	Vidmar et al., 2017
40S ribosomal protein SA	P08865		peptide-Glu214+Gln-peptide	N	MS	Glu	Lys	Glu	Glu	Gln	Ala	Ala	Ala	Vidmar et al., 2017
4F2 cell-surface antigen heavy chain	P08195		peptide-Glu620+Gly-peptide	N	MS	Glu	Pro	His	Glu	Gly	Leu	Leu	Leu	Vidmar et al., 2017
4F2 cell-surface antigen heavy chain	P08195		peptide-Glu612+Arg-peptide	N	MS	Leu	Glu	Leu	Glu	Arg	Leu	Lys	Leu	Vidmar et al., 2017
4F2 cell-surface antigen heavy chain isoform 2	P08195-2	168-197	peptide-Asp175+Leu-peptide	N	MS	Ala	Gln	Thr	Asp	Leu	Leu	Gln	Ile	Schilling & Overall, 2008
50S ribosomal protein L10	P0A7J3	2-165	peptide-Glu107+Val-peptide	N	MS	Ala	Lys	Phe	Glu	Val	Lys	Ala	Ala	Timmer et al., 2009
50S ribosomal protein L10	P0A7J3	2-165	peptide-Glu14+Val-peptide	N	MS	Ile	Val	Ala	Glu	Val	Ser	Glu	Val	Timmer et al., 2009
50S ribosomal protein L10	P0A7J3	2-165	peptide-Glu17+Val-peptide	N	MS	Glu	Val	Ser	Glu	Val	Ala	Lys	Gly	Timmer et al., 2009
50S ribosomal protein L11	P0A7J7	2-142	peptide-Glu108+Ile-peptide	N	MS	Gln	Leu	Gln	Glu	Ile	Ala	Gln	Thr	Timmer et al., 2009
50S ribosomal protein L15	P02413	1-144	peptide-Glu106+Phe-peptide	N	MS	Ile	Gln	Ile	Glu	Phe	Ala	Lys	Val	Timmer et al., 2009
50S ribosomal protein L18	P0C018	1-117	peptide-Glu60+Gln-peptide	N	MS	Ala	Ile	Ala	Glu	Gln	Leu	Lys	Tyr	Timmer et al., 2009
50S ribosomal protein L3	P60438	1-209	peptide-Glu64+Ala-peptide	N	MS	Thr	Lys	Pro	Glu	Ala	Gly	His	Phe	Timmer et al., 2009
50S ribosomal protein L4	P60723	1-201	peptide-Glu25+Ala-peptide	N	MS	Asp	Phe	Asn	Glu	Ala	Leu	Val	His	Timmer et al., 2009
50S ribosomal protein L7/L12	P0A7K2	2-121	peptide-Glu54+Phe-peptide	N	MS	Glu	Lys	Thr	Glu	Phe	Asp	Val	Ile	Timmer et al., 2009
50S ribosomal protein L9	P0A7R1	1-149	peptide-Glu53+Leu-peptide	N	MS	Arg	Arg	Ala	Glu	Leu	Glu	Ala	Lys	Timmer et al., 2009
50S ribosomal protein L9	P0A7R1	1-149	peptide-Glu55+Ala-peptide	N	MS	Ala	Glu	Leu	Glu	Ala	Lys	Leu	Ala	Timmer et al., 2009
50S ribosomal protein L9	P0A7R1	1-149	peptide-Glu60+Val-peptide	N	MS	Lys	Leu	Ala	Glu	Val	Leu	Ala	Ala	Timmer et al., 2009
6-phosphogluconate dehydrogenase, decarboxylating	P52209	173-184	VGDE+GAGHFVK	N	MS	Val	Gly	Asp	Glu	Gly	Ala	Gly	His	Schilling & Overall, 2008
6-phosphogluconate dehydrogenase, decarboxylating	P52209	434-447	HE+MLPASLIQAQR	N	MS	-	-	His	Glu	Met	Leu	Pro	Ala	Schilling & Overall, 2008
6-phosphogluconate dehydrogenase, decarboxylating	P52209	382-396	NPE+LQNLLLDDFFK	N	MS	-	Asn	Pro	Glu	Leu	Gln	Asn	Leu	Schilling & Overall, 2008
6-phosphogluconate dehydrogenase, decarboxylating	P52209	2-483	peptide-Glu456+Leu-peptide	N	MS	His	Thr	Tyr	Glu	Leu	Leu	Ala	Lys	Schilling & Overall, 2008
6-phosphogluconate dehydrogenase, decarboxylating	P52209	2-483	peptide-Glu215+Met-peptide	N	MS	Ala	Gln	Asp	Glu	Met	Ala	Gln	Ala	Schilling & Overall, 2008
6-phosphogluconate dehydrogenase, decarboxylating	P52209		peptide-Glu46+Ala-peptide	N	MS	Leu	Ala	Asn	Glu	Ala	Lys	Gly	Thr	Vidmar et al., 2017
6-phosphogluconolactonase	O95336	1-29	peptide-Glu17+Leu-peptide	N	MS	Ser	Ser	Gln	Glu	Leu	Gly	Ala	Ala	Schilling & Overall, 2008
6-phosphogluconolactonase	O95336		peptide-Glu121+Ala-peptide	N	MS	Pro	Val	Glu	Glu	Ala	Ala	Glu	Asp	Vidmar et al., 2017
6-phosphogluconolactonase	O95336		peptide-Glu242+Ala-peptide	N	MS	Phe	Leu	Asp	Glu	Ala	Ala	Ala	Arg	Vidmar et al., 2017
60 kDa heat shock protein, mitochondrial	P10809	316-344	peptide-Glu20+Asp-peptide	N	MS	Leu	Asn	Leu	Glu	Asp	Val	Gln	Pro	Schilling & Overall, 2008
60 kDa heat shock protein, mitochondrial	P10809		peptide-Glu238+Lys-peptide	N	MS	-	-	Glu	Glu	Lys	Asp	Pro	Gly	Schilling & Overall, 2008
60 kDa heat shock protein, mitochondrial	P10809	345-359	VGE+VIVTKDDAMLLK	N	MS	-	Val	Gly	Glu	Val	Ile	Val	Thr	Schilling & Overall, 2008
60 kDa heat shock protein, mitochondrial	P10809		peptide-Glu262+Ile-peptide	N	MS	Pro	Ala	Leu	Glu	Ile	Ala	Asn	Ala	Vidmar et al., 2017
60 kDa heat shock protein, mitochondrial	P10809		peptide-Glu328+Gly-peptide	N	MS	Phe	Gly	Glu	Glu	Gly	Leu	Thr	Leu	Vidmar et al., 2017
60 kDa heat shock protein, mitochondrial	P10809		peptide-Glu215+Gly-peptide	N	MS	Glu	Ile	Ile	Glu	Gly	Met	Lys	Phe	Vidmar et al., 2017
60 kDa heat shock protein, mitochondrial	P10809		peptide-Glu392+Arg-peptide	N	MS	Lys	Leu	Asn	Glu	Arg	Leu	Ala	Lys	Vidmar et al., 2017
60 kDa heat shock protein, mitochondrial	P10809		peptide-Glu154+Leu-peptide	N	MS	Val	Ile	Ala	Glu	Leu	Lys	Lys	Gln	Vidmar et al., 2017
60 kDa heat shock protein, mitochondrial	P10809		peptide-Asp423+Ala-peptide	N	MS	Arg	Val	Thr	Asp	Ala	Leu	Asn	Ala	Vidmar et al., 2017
60 kDa heat shock protein, mitochondrial	P10809		peptide-Glu108+Ala-peptide	N	MS	Thr	Asn	Glu	Glu	Ala	Gly	Asp	Gly	Vidmar et al., 2017
60 kDa heat shock protein, mitochondrial	P10809		peptide-Glu248+Lys-peptide	N	MS	Leu	Leu	Ser	Glu	Lys	Lys	Ile	Ser	Vidmar et al., 2017
60 kDa heat shock protein, mitochondrial	P10809		peptide-Glu515+Lys-peptide	N	MS	Asn	Met	Val	Glu	Lys	Gly	Ile	Ile	Vidmar et al., 2017
60 kDa heat shock protein, mitochondrial	P10809		peptide-Glu543+Val-peptide	N	MS	Thr	Thr	Ala	Glu	Val	Val	Val	Thr	Vidmar et al., 2017
60 kDa heat shock protein, mitochondrial	P10809		peptide-Glu416+Lys-peptide	N	MS	Glu	Val	Asn	Glu	Lys	Lys	Asp	Arg	Vidmar et al., 2017
60 kDa heat shock protein, mitochondrial	P10809		peptide-Glu167+Ile-peptide	N	MS	Thr	Pro	Glu	Glu	Ile	Ala	Gln	Val	Vidmar et al., 2017
60S acidic ribosomal protein P0	P05388	149-162	GTIE+ILSDVQLIK	N	MS	Gly	Thr	Ile	Glu	Ile	Leu	Ser	Asp	Schilling & Overall, 2008
60S acidic ribosomal protein P0	P05388	1-317	peptide-Glu93+Asp-peptide	N	MS	Phe	Thr	Lys	Glu	Asp	Leu	Thr	Glu	Schilling & Overall, 2008
60S acidic ribosomal protein P0	P05388	1-317	peptide-Glu97+Ile-peptide	N	MS	Asp	Leu	Thr	Glu	Ile	Arg	Asp	Met	Schilling & Overall, 2008
60S acidic ribosomal protein P1	P05386	1-114	peptide-Glu20+Val-peptide	N	MS	His	Asp	Asp	Glu	Val	Thr	Val	Thr	Schilling & Overall, 2008
60S acidic ribosomal protein P1	P05386		peptide-Gly66+Gly-peptide	N	MS	Val	Gly	Ala	Gly	Gly	Pro	Ala	Pro	Vidmar et al., 2017
60S acidic ribosomal protein P1	P05386		peptide-Gly78+Gly-peptide	N	MS	Ala	Pro	Ala	Gly	Gly	Pro	Ala	Pro	Vidmar et al., 2017
60S acidic ribosomal protein P1	P05386		peptide-Glu6+Leu-peptide	N	MS	Ser	Val	Ser	Glu	Leu	Ala	Cys	Ile	Vidmar et al., 2017
60S acidic ribosomal protein P2	P05387	25-41	ILD+SVGIEADDDRLNK	N	MS	-	Ile	Leu	Asp	Ser	Val	Gly	Ile	Schilling & Overall, 2008
60S ribosomal protein L10a	P62906		peptide-Glu16+Val-peptide	N	MS	Ala	Val	Arg	Glu	Val	Leu	His	Gly	Vidmar et al., 2017
60S ribosomal protein L10a	P62906		peptide-Glu76+Ala-peptide	N	MS	His	Cys	Asp	Glu	Ala	Lys	Ala	Val	Vidmar et al., 2017
60S ribosomal protein L11	P62913		peptide-Glu41+Gln-peptide	N	MS	Lys	Val	Leu	Glu	Gln	Leu	Thr	Gly	Vidmar et al., 2017
60S ribosomal protein L11	P62913		peptide-Glu161+Ala-peptide	N	MS	Ser	Lys	Glu	Glu	Ala	Met	Arg	Trp	Vidmar et al., 2017
60S ribosomal protein L11	P62913		peptide-Glu93+Leu-peptide	N	MS	Arg	Glu	Tyr	Glu	Leu	Arg	Lys	Asn	Vidmar et al., 2017
60S ribosomal protein L12	P30050		peptide-Glu131+Ile-peptide	N	MS	Thr	Ile	Lys	Glu	Ile	Leu	Gly	Thr	Vidmar et al., 2017
60S ribosomal protein L12	P30050		peptide-Glu21+Val-peptide	N	MS	Thr	Gly	Gly	Glu	Val	Gly	Ala	Thr	Vidmar et al., 2017
60S ribosomal protein L12	P30050		peptide-Glu9+Ile-peptide	N	MS	Asp	Pro	Asn	Glu	Ile	Lys	Val	Val	Vidmar et al., 2017
60S ribosomal protein L13	P26373		peptide-Glu143+Leu-peptide	N	MS	Ser	Ala	Glu	Glu	Leu	Lys	Leu	Ala	Vidmar et al., 2017
60S ribosomal protein L13	P26373		peptide-Glu201+Ala-peptide	N	MS	Arg	Ala	Lys	Glu	Ala	Ala	Glu	Gln	Vidmar et al., 2017
60S ribosomal protein L13	P26373		peptide-Glu164+Lys-peptide	N	MS	Tyr	Lys	Lys	Glu	Lys	Ala	Arg	Val	Vidmar et al., 2017
60S ribosomal protein L13a	P40429		peptide-Glu144+Val-peptide	N	MS	Leu	Ala	His	Glu	Val	Gly	Trp	Lys	Vidmar et al., 2017
60S ribosomal protein L17	P18621		peptide-Glu103+Leu-peptide	N	MS	Ser	Asn	Ala	Glu	Leu	Lys	Gly	Leu	Vidmar et al., 2017
60S ribosomal protein L17	P18621		peptide-Glu152+Lys-peptide	N	MS	Ile	Leu	Thr	Glu	Lys	Glu	Gln	Ile	Vidmar et al., 2017
60S ribosomal protein L18	Q07020	120-132	LTFD+QLALDSPK	N	MS	Leu	Thr	Phe	Asp	Gln	Leu	Ala	Leu	Schilling & Overall, 2008
60S ribosomal protein L19	P84098		peptide-Glu183+Ile-peptide	N	MS	Lys	Lys	Glu	Glu	Ile	Ile	Lys	Thr	Vidmar et al., 2017
60S ribosomal protein L21	P46778		peptide-Glu121+Lys-peptide	N	MS	Glu	Ala	Lys	Glu	Lys	Gly	Thr	Trp	Vidmar et al., 2017
60S ribosomal protein L21	P46778		peptide-Glu94+His-peptide	N	MS	Val	Arg	Ile	Glu	His	Ile	Lys	His	Vidmar et al., 2017
60S ribosomal protein L21	P46778		peptide-Glu137+Ala-peptide	N	MS	Pro	Pro	Arg	Glu	Ala	His	Phe	Val	Vidmar et al., 2017
60S ribosomal protein L23	P62829	51-67	LPAAGVGD+MVMATVKK	N	MS	Gly	Val	Gly	Asp	Met	Val	Met	Ala	Schilling & Overall, 2008
60S ribosomal protein L23	P62829		peptide-Glu111+Met-peptide	N	MS	Asn	Lys	Gly	Glu	Met	Lys	Gly	Ser	Vidmar et al., 2017
60S ribosomal protein L24	P83731	1-157	peptide-Glu99+Val-peptide	N	MS	Gln	Lys	Pro	Glu	Val	Arg	Lys	Ala	Schilling & Overall, 2008
60S ribosomal protein L24	P83731		peptide-Glu106+Gln-peptide	N	MS	Ala	Gln	Arg	Glu	Gln	Ala	Ile	Arg	Vidmar et al., 2017
60S ribosomal protein L27	P61353		peptide-Glu120+Arg-peptide	N	MS	Lys	Phe	Glu	Glu	Arg	Tyr	Lys	Thr	Vidmar et al., 2017
60S ribosomal protein L29	P47914		peptide-Glu70+Ala-peptide	N	MS	Ala	Arg	Ala	Glu	Ala	Ile	Lys	Ala	Vidmar et al., 2017
60S ribosomal protein L3	P39023	200-224	peptide-Glu215+Met-peptide	N	MS	Gly	Gln	Asp	Glu	Met	Ile	Asp	Val	Schilling & Overall, 2008
60S ribosomal protein L3	P39023	2-403	peptide-Glu215+Met-peptide	N	MS	Gly	Gln	Asp	Glu	Met	Ile	Asp	Val	Schilling & Overall, 2008
60S ribosomal protein L3	P39023		peptide-Glu384+Lys-peptide	N	MS	Thr	Met	Glu	Glu	Lys	Lys	Ala	Phe	Vidmar et al., 2017
60S ribosomal protein L30	P62888		peptide-Glu80+Leu-peptide	N	MS	Asn	Asn	Ile	Glu	Leu	Gly	Thr	Ala	Vidmar et al., 2017
60S ribosomal protein L32	P62910		peptide-Glu113+Arg-peptide	N	MS	Ala	Ile	Val	Glu	Arg	Ala	Ala	Gln	Vidmar et al., 2017
60S ribosomal protein L32	P62910		peptide-Glu98+Ile-peptide	N	MS	Tyr	Cys	Ala	Glu	Ile	Ala	His	Asn	Vidmar et al., 2017
60S ribosomal protein L32	P62910		peptide-Glu86+Val-peptide	N	MS	Lys	Glu	Leu	Glu	Val	Leu	Leu	Met	Vidmar et al., 2017
60S ribosomal protein L35	P42766		peptide-Glu111+Arg-peptide	N	MS	Gln	Arg	Lys	Glu	Arg	Leu	Tyr	Pro	Vidmar et al., 2017
60S ribosomal protein L35	P42766		peptide-Glu16+Leu-peptide	N	MS	Lys	Lys	Glu	Glu	Leu	Leu	Lys	Gln	Vidmar et al., 2017
60S ribosomal protein L36	Q9Y3U8	87-98	EE+LSNVLAAMR	N	MS	-	-	Glu	Glu	Leu	Ser	Asn	Val	Schilling & Overall, 2008
60S ribosomal protein L36	Q9Y3U8	2-105	EE+LSNVLAAMR	N	MS	-	-	Glu	Glu	Leu	Ser	Asn	Val	Schilling & Overall, 2008
60S ribosomal protein L38	P63173	4-16	IEE+IKDFLLTAR	N	MS	-	Ile	Glu	Glu	Ile	Lys	Asp	Phe	Schilling & Overall, 2008
60S ribosomal protein L4	P36578	143-162	IEE+VPELPLVVEDKVEGYK	N	MS	-	Ile	Glu	Glu	Val	Pro	Glu	Leu	Schilling & Overall, 2008
60S ribosomal protein L4	P36578		peptide-Glu56+Leu-peptide	N	MS	Ala	Val	Ser	Glu	Leu	Ala	Gly	His	Vidmar et al., 2017
60S ribosomal protein L4	P36578		peptide-Glu410+Lys-peptide	N	MS	Pro	Ala	Pro	Glu	Lys	Lys	Pro	Ala	Vidmar et al., 2017
60S ribosomal protein L5	P46777	2-297	peptide-Glu238+Met-peptide	N	MS	Met	Met	Glu	Glu	Met	Tyr	Lys	Lys	Schilling & Overall, 2008
60S ribosomal protein L5	P46777	2-297	peptide-Glu186+Ser-peptide	N	MS	Tyr	Asp	Ser	Glu	Ser	Lys	Glu	Phe	Schilling & Overall, 2008
60S ribosomal protein L5	P46777		peptide-Asp147+Ala-peptide	N	MS	Cys	Tyr	Leu	Asp	Ala	Gly	Leu	Ala	Vidmar et al., 2017
60S ribosomal protein L6	Q02878		peptide-Glu244+Gln-peptide	N	MS	Glu	Ile	Thr	Glu	Gln	Arg	Lys	Ile	Vidmar et al., 2017
60S ribosomal protein L6	Q02878		peptide-Glu229+Gly-peptide	N	MS	Arg	His	Gln	Glu	Gly	Glu	Ile	Phe	Vidmar et al., 2017
60S ribosomal protein L7	P18124	202-212	E+ANNFLWPFK	N	MS	-	-	-	Glu	Ala	Asn	Asn	Phe	Schilling & Overall, 2008
60S ribosomal protein L7	P18124	223-242	TTHFVE+GGDAGNREDQINR	N	MS	His	Phe	Val	Glu	Gly	Gly	Asp	Ala	Schilling & Overall, 2008
60S ribosomal protein L7	P18124		peptide-Ser214+Ser-peptide	N	MS	Phe	Lys	Leu	Ser	Ser	Pro	Arg	Gly	Vidmar et al., 2017
60S ribosomal protein L7	P18124		peptide-Glu16+Thr-peptide	N	MS	Ala	Val	Pro	Glu	Thr	Leu	Lys	Lys	Vidmar et al., 2017
60S ribosomal protein L7	P18124		peptide-Glu193+Ile-peptide	N	MS	Leu	Ile	His	Glu	Ile	Tyr	Thr	Val	Vidmar et al., 2017
60S ribosomal protein L7	P18124		peptide-Glu60+Tyr-peptide	N	MS	Tyr	His	Lys	Glu	Tyr	Arg	Gln	Met	Vidmar et al., 2017
60S ribosomal protein L7	P18124		peptide-Glu6+Lys-peptide	N	MS	Gly	Val	Glu	Glu	Lys	Lys	Lys	Glu	Vidmar et al., 2017
60S ribosomal protein L7a	P62424		peptide-Glu23+Ala-peptide	N	MS	Lys	Lys	Gln	Glu	Ala	Lys	Lys	Val	Vidmar et al., 2017
60S ribosomal protein L7a	P62424		peptide-Glu109+Lys-peptide	N	MS	Thr	Lys	Gln	Glu	Lys	Lys	Gln	Arg	Vidmar et al., 2017
60S ribosomal protein L7a	P62424		peptide-Ala15+Pro-peptide	N	MS	Val	Ala	Pro	Ala	Pro	Ala	Val	Val	Vidmar et al., 2017
60S ribosomal protein L9	P32969	1-192	peptide-Asp171+Ile-peptide	N	MS	Lys	Asn	Lys	Asp	Ile	Arg	Lys	Phe	Schilling & Overall, 2008
60S ribosomal protein L9	P32969		peptide-Glu120+Lys-peptide	N	MS	Phe	Leu	Gly	Glu	Lys	Tyr	Ile	Arg	Vidmar et al., 2017
60S ribosomal protein L9	P32969		peptide-Glu183+Lys-peptide	N	MS	Tyr	Val	Ser	Glu	Lys	Gly	Thr	Val	Vidmar et al., 2017
7,8-dihydro-8-oxoguanine triphosphatase	P36639		peptide-Glu82+Gly-peptide	N	MS	Lys	Val	Gln	Glu	Gly	Glu	Thr	Ile	Vidmar et al., 2017
78 kDa glucose-regulated protein	P11021		peptide-Glu625+Ile-peptide	N	MS	Glu	Leu	Glu	Glu	Ile	Val	Gln	Pro	Vidmar et al., 2017
78 kDa glucose-regulated protein	P11021		peptide-Glu243+Val-peptide	N	MS	Gly	Val	Phe	Glu	Val	Val	Ala	Thr	Vidmar et al., 2017
78 kDa glucose-regulated protein	P11021		peptide-Glu121+Lys-peptide	N	MS	Lys	Val	Val	Glu	Lys	Lys	Thr	Lys	Vidmar et al., 2017
78 kDa glucose-regulated protein	P11021		peptide-Glu328+Glu-peptide	N	MS	Ala	Lys	Phe	Glu	Glu	Leu	Asn	Met	Vidmar et al., 2017
78 kDa glucose-regulated protein	P11021		peptide-Glu89+Asn-peptide	N	MS	Ser	Asn	Pro	Glu	Asn	Thr	Val	Phe	Vidmar et al., 2017
78 kDa glucose-regulated protein	P11021		peptide-Asp94+Ala-peptide	N	MS	Thr	Val	Phe	Asp	Ala	Lys	Arg	Leu	Vidmar et al., 2017
78 kDa glucose-regulated protein	P11021		peptide-Glu377+Phe-peptide	N	MS	Leu	Val	Lys	Glu	Phe	Phe	Asn	Gly	Vidmar et al., 2017
78 kDa glucose-regulated protein	P11021		peptide-Ala18+Glu-peptide	N	MS	Ala	Ala	Arg	Ala	Glu	Glu	Glu	Asp	Vidmar et al., 2017
78 kDa glucose-regulated protein	P11021		peptide-Asp483+Leu-peptide	N	MS	Gly	Thr	Phe	Asp	Leu	Thr	Gly	Ile	Vidmar et al., 2017
78 kDa glucose-regulated protein	P11021		peptide-Gly636+Ser-peptide	N	MS	Lys	Leu	Tyr	Gly	Ser	Ala	Gly	Pro	Vidmar et al., 2017
78 kDa glucose-regulated protein	P11021		peptide-Glu310+Ser-peptide	N	MS	Ile	Glu	Ile	Glu	Ser	Phe	Tyr	Glu	Vidmar et al., 2017
78 kDa glucose-regulated protein	P11021		peptide-Glu293+Lys-peptide	N	MS	Arg	Glu	Val	Glu	Lys	Ala	Lys	Arg	Vidmar et al., 2017
78 kDa glucose-regulated protein	P11021		peptide-Glu592+Thr-peptide	N	MS	Glu	Asp	Lys	Glu	Thr	Met	Glu	Lys	Vidmar et al., 2017
78 kDa glucose-regulated protein	P11021		peptide-Glu329+Leu-peptide	N	MS	Lys	Phe	Glu	Glu	Leu	Asn	Met	Asp	Vidmar et al., 2017
78 kDa glucose-regulated protein	P11021		peptide-Glu551+Asp-peptide	N	MS	Phe	Ala	Glu	Glu	Asp	Lys	Lys	Leu	Vidmar et al., 2017
78 kDa glucose-regulated protein	P11021		peptide-Glu291+Val-peptide	N	MS	Leu	Arg	Arg	Glu	Val	Glu	Lys	Ala	Vidmar et al., 2017
78 kDa glucose-regulated protein	P11021		peptide-Glu320+Thr-peptide	N	MS	Asp	Phe	Ser	Glu	Thr	Leu	Thr	Arg	Vidmar et al., 2017
78 kDa glucose-regulated protein	P11021		peptide-Glu71+Gly-peptide	N	MS	Phe	Thr	Pro	Glu	Gly	Glu	Arg	Leu	Vidmar et al., 2017
78 kDa glucose-regulated protein	P11021		peptide-Glu347+Asp-peptide	N	MS	Lys	Val	Leu	Glu	Asp	Ser	Asp	Leu	Vidmar et al., 2017
78 kDa glucose-regulated protein	P11021		peptide-Glu566+Ser-peptide	N	MS	Asn	Glu	Leu	Glu	Ser	Tyr	Ala	Tyr	Vidmar et al., 2017
78 kDa glucose-regulated protein precursor	P11021	601-617	IEWLE+SHQDADIEDFK	N	MS	Glu	Trp	Leu	Glu	Ser	His	Gln	Asp	Schilling & Overall, 2008
78 kDa glucose-regulated protein precursor	P11021	19-654	peptide-Asp111+Ile-peptide	N	MS	Val	Gln	Gln	Asp	Ile	Lys	Phe	Leu	Schilling & Overall, 2008
78 kDa glucose-regulated protein precursor	P11021	19-654	peptide-Glu51+Ile-peptide	N	MS	Gly	Arg	Val	Glu	Ile	Ile	Ala	Asn	Schilling & Overall, 2008
78 kDa glucose-regulated protein precursor	P11021	19-654	peptide-Glu467+Gly-peptide	N	MS	Lys	Val	Tyr	Glu	Gly	Glu	Arg	Pro	Schilling & Overall, 2008
A-kinase anchor protein 2	Q9Y2D5		peptide-Glu701+Ser-peptide	N	MS	Ala	Thr	Gln	Glu	Ser	Asp	Val	Met	Vidmar et al., 2017
A-kinase anchor protein 2	Q9Y2D5		peptide-Glu653+Arg-peptide	N	MS	Ala	Leu	Arg	Glu	Arg	Gly	Pro	Pro	Vidmar et al., 2017
A-kinase anchor protein 2	Q9Y2D5		peptide-Glu224+Leu-peptide	N	MS	Glu	Arg	Arg	Glu	Leu	Ile	Arg	Ser	Vidmar et al., 2017
A-kinase anchor protein 2	Q9Y2D5		peptide-Glu202+Gln-peptide	N	MS	His	Glu	Lys	Glu	Gln	Tyr	Cys	Ile	Vidmar et al., 2017
A-kinase anchor protein 2	Q9Y2D5		peptide-Glu96+Ala-peptide	N	MS	Pro	Val	His	Glu	Ala	Thr	Gln	Pro	Vidmar et al., 2017
A-kinase anchor protein 2	Q9Y2D5		peptide-Glu180+Leu-peptide	N	MS	Ala	Lys	Phe	Glu	Leu	Arg	Ala	Phe	Vidmar et al., 2017
A-kinase anchor protein 2	Q9Y2D5		peptide-Glu477+Leu-peptide	N	MS	Gly	Leu	Asp	Glu	Leu	Ser	Val	Arg	Vidmar et al., 2017
A-kinase anchor protein 2	Q9Y2D5		peptide-Glu635+Lys-peptide	N	MS	Pro	Val	Gln	Glu	Lys	Arg	Asp	Val	Vidmar et al., 2017
A-kinase anchor protein 2	Q9Y2D5		peptide-Glu725+Ile-peptide	N	MS	Ile	Glu	Glu	Glu	Ile	Arg	Ala	Ala	Vidmar et al., 2017
Abz-Ala-Asp-Ala-Ala-Glu-Val-Phe-Tyr(NO2)-Asp			Abz-Ala-Asp-Ala-Ala-Glu+Val-Phe-Tyr(NO2)-Asp	S		Asp	Ala	Ala	Glu	Val	Phe	Tyn	Asp	Breddam & Meldal, 1992
Abz-Ala-Phe-Ala-Phe-Glu-Val-Phe-Tyr(NO2)-Asp			Abz-Ala-Phe-Ala-Phe-Glu+Val-Phe-Tyr(NO2)-Asp	S		Phe	Ala	Phe	Glu	Val	Phe	Tyn	Asp	Breddam & Meldal, 1992
Abz-Ala-Phe-Arg-Ala-Glu-Val-Phe-Tyr(NO2)-Asp			Abz-Ala-Phe-Arg-Ala-Glu+Val-Phe-Tyr(NO2)-Asp	S		Phe	Arg	Ala	Glu	Val	Phe	Tyn	Asp	Breddam & Meldal, 1992
Abz-Ala-Phe-Val-Ala-Glu-Val-Phe-Tyr(NO2)-Asp			Abz-Ala-Phe-Val-Ala-Glu+Val-Phe-Tyr(NO2)-Asp	S		Phe	Val	Ala	Glu	Val	Phe	Tyn	Asp	Breddam & Meldal, 1992
acetyl-CoA acetyltransferase, cytosolic	Q9BWD1	44-71	peptide-Glu54+Val-peptide	N	MS	Asp	Val	Ser	Glu	Val	Ile	Phe	Gly	Schilling & Overall, 2008
acetyl-CoA acetyltransferase, cytosolic	Q9BWD1	1-397	peptide-Glu268+Ala-peptide	N	MS	Lys	Lys	Ser	Glu	Ala	Asp	Lys	Arg	Schilling & Overall, 2008
Acetyl-CoA acetyltransferase, cytosolic	Q9BWD1		peptide-Glu229+Ala-peptide	N	MS	Ser	Asn	Ile	Glu	Ala	Met	Ser	Lys	Vidmar et al., 2017
Acetyl-CoA acetyltransferase, cytosolic	Q9BWD1		peptide-Glu165+Asn-peptide	N	MS	Ile	Thr	Ala	Glu	Asn	Val	Ala	Lys	Vidmar et al., 2017
Acetyl-CoA acetyltransferase, cytosolic	Q9BWD1		peptide-Glu190+Asn-peptide	N	MS	Asn	Arg	Thr	Glu	Asn	Ala	Gln	Lys	Vidmar et al., 2017
Acetyl-CoA acetyltransferase, cytosolic	Q9BWD1		peptide-Glu176+Asp-peptide	N	MS	Val	Ser	Arg	Glu	Asp	Gln	Asp	Lys	Vidmar et al., 2017
Acetyl-CoA acetyltransferase, mitochondrial	P24752		peptide-Glu176+Asp-peptide	N	MS	Val	Lys	Leu	Glu	Asp	Leu	Ile	Val	Vidmar et al., 2017
Acetyl-CoA acetyltransferase, mitochondrial	P24752		peptide-Glu255+Tyr-peptide	N	MS	Glu	Asp	Glu	Glu	Tyr	Lys	Arg	Val	Vidmar et al., 2017
Acetyl-CoA acetyltransferase, mitochondrial	P24752		peptide-Glu77+Lys-peptide	N	MS	Gly	Ala	Ile	Glu	Lys	Ala	Gly	Ile	Vidmar et al., 2017
acidic leucine-rich nuclear phosphoprotein 32 family member A	P39687	116-132	SLDLFNCE+VTNLNDYR	N	MS	Phe	Asn	Cys	Glu	Val	Thr	Asn	Leu	Schilling & Overall, 2008
Acidic leucine-rich nuclear phosphoprotein 32 family member A	P39687		peptide-Glu70+Leu-peptide	N	MS	Lys	Lys	Leu	Glu	Leu	Ser	Asp	Asn	Vidmar et al., 2017
Acidic leucine-rich nuclear phosphoprotein 32 family member A	P39687		peptide-Glu31+Gly-peptide	N	MS	Arg	Ser	Asn	Glu	Gly	Lys	Leu	Glu	Vidmar et al., 2017
Acidic leucine-rich nuclear phosphoprotein 32 family member A	P39687		peptide-Asp102+Leu-peptide	N	MS	Lys	Ile	Lys	Asp	Leu	Ser	Thr	Ile	Vidmar et al., 2017
Acidic leucine-rich nuclear phosphoprotein 32 family member A	P39687		peptide-Glu113+Asn-peptide	N	MS	Lys	Lys	Leu	Glu	Asn	Leu	Lys	Ser	Vidmar et al., 2017
Acidic leucine-rich nuclear phosphoprotein 32 family member A	P39687		peptide-Glu10+Leu-peptide	N	MS	Ile	His	Leu	Glu	Leu	Arg	Asn	Arg	Vidmar et al., 2017
Acidic leucine-rich nuclear phosphoprotein 32 family member A	P39687		peptide-Glu21+Leu-peptide	N	MS	Asp	Val	Lys	Glu	Leu	Val	Leu	Asp	Vidmar et al., 2017
Acidic leucine-rich nuclear phosphoprotein 32 family member A	P39687		peptide-Glu232+Arg-peptide	N	MS	Gly	Glu	Glu	Glu	Arg	Gly	Gln	Lys	Vidmar et al., 2017
Acidic leucine-rich nuclear phosphoprotein 32 family member B	Q92688		peptide-Glu10+Leu-peptide	N	MS	Ile	His	Leu	Glu	Leu	Arg	Asn	Arg	Vidmar et al., 2017
Acidic leucine-rich nuclear phosphoprotein 32 family member B	Q92688		peptide-Glu113+Cys-peptide	N	MS	Lys	Lys	Leu	Glu	Cys	Leu	Lys	Ser	Vidmar et al., 2017
Acidic leucine-rich nuclear phosphoprotein 32 family member B	Q92688		peptide-Glu73+Asn-peptide	N	MS	Glu	Leu	Ser	Glu	Asn	Arg	Ile	Phe	Vidmar et al., 2017
acidic leucine-rich nuclear phosphoprotein 32 family member E	Q9BTT0	68-86	LE+LSDNIISGGLEVLAEK	N	MS	-	-	Leu	Glu	Leu	Ser	Asp	Asn	Schilling & Overall, 2008
acidic leucine-rich nuclear phosphoprotein 32 family member E	Q9BTT0	1-268	peptide-Glu124+Ile-peptide	N	MS	Phe	Asn	Cys	Glu	Ile	Thr	Asn	Leu	Schilling & Overall, 2008
Acidic leucine-rich nuclear phosphoprotein 32 family member E	Q9BTT0		peptide-Glu33+Ile-peptide	N	MS	Val	Asn	Gly	Glu	Ile	Glu	Gly	Leu	Vidmar et al., 2017
Acidic leucine-rich nuclear phosphoprotein 32 family member E	Q9BTT0		peptide-Glu53+Leu-peptide	N	MS	Ala	Asn	Val	Glu	Leu	Ser	Ser	Leu	Vidmar et al., 2017
Acidic leucine-rich nuclear phosphoprotein 32 family member E	Q9BTT0		peptide-Glu215+Val-peptide	N	MS	Gly	Glu	Glu	Glu	Val	Gly	Leu	Ser	Vidmar et al., 2017
Acidic leucine-rich nuclear phosphoprotein 32 family member E	Q9BTT0		peptide-Glu10+Leu-peptide	N	MS	Ile	Asn	Leu	Glu	Leu	Arg	Asn	Arg	Vidmar et al., 2017
Acidic leucine-rich nuclear phosphoprotein 32 family member E	Q9BTT0		peptide-Glu247+Gly-peptide	N	MS	Glu	Glu	Glu	Glu	Gly	Gly	Leu	Arg	Vidmar et al., 2017
aconitase	O75944	300-327	peptide-Glu315+Ile-peptide	N	MS	Thr	Ser	Pro	Glu	Ile	Val	Thr	Ala	Schilling & Overall, 2008
aconitate hydratase 2	P36683	1-865	peptide-Glu751+Gly-peptide	N	MS	Leu	Thr	Glu	Glu	Gly	Tyr	Tyr	Ser	Timmer et al., 2009
aconitate hydratase 2	P36683	1-865	peptide-Glu809+Leu-peptide	N	MS	Ala	Ser	Ala	Glu	Leu	Ala	Ala	Val	Timmer et al., 2009
Aconitate hydratase, mitochondrial	Q99798		peptide-Glu344+Leu-peptide	N	MS	Asn	Leu	Ser	Glu	Leu	Lys	Pro	His	Vidmar et al., 2017
aconitate hydratase, mitochondrial precursor	Q99798	479-506	peptide-Glu494+Ile-peptide	N	MS	Thr	Ser	Pro	Glu	Ile	Val	Thr	Ala	Schilling & Overall, 2008
ACTA2 protein	Q13707	243-256	LPD+GQVITIGNER	N	MS	-	Leu	Pro	Asp	Gly	Gln	Val	Ile	Schilling & Overall, 2008
ACTA2 protein	Q13707	1-330	peptide-Glu74+His-peptide	N	MS	Tyr	Pro	Ile	Glu	His	Gly	Ile	Ile	Schilling & Overall, 2008
actin alpha 1 skeletal muscle protein	Q7Z7J6	1-254	peptide-Glu74+His-peptide	N	MS	Tyr	Pro	Ile	Glu	His	Gly	Ile	Ile	Schilling & Overall, 2008
actin alpha 1 skeletal muscle protein	Q7Z7J6	1-254	peptide-Glu59+Ala-peptide	N	MS	Val	Gly	Asp	Glu	Ala	Gln	Ser	Lys	Schilling & Overall, 2008
actin, alpha cardiac muscle 1	P68032	243-256	LPD+GQVITIGNER	N	MS	-	Leu	Pro	Asp	Gly	Gln	Val	Ile	Schilling & Overall, 2008
actin, alpha cardiac muscle 1	P68032	227-240	E+MATAASSSSLEK	N	MS	-	-	-	Glu	Met	Ala	Thr	Ala	Schilling & Overall, 2008
actin, alpha cardiac muscle 1	P68032	3-377	peptide-Glu74+His-peptide	N	MS	Tyr	Pro	Ile	Glu	His	Gly	Ile	Ile	Schilling & Overall, 2008
actin, alpha cardiac muscle 1	P68032	3-377	peptide-Glu59+Ala-peptide	N	MS	Val	Gly	Asp	Glu	Ala	Gln	Ser	Lys	Schilling & Overall, 2008
actin, alpha skeletal muscle	P68133	243-256	LPD+GQVITIGNER	N	MS	-	Leu	Pro	Asp	Gly	Gln	Val	Ile	Schilling & Overall, 2008
actin, alpha skeletal muscle	P68133	227-240	E+MATAASSSSLEK	N	MS	-	-	-	Glu	Met	Ala	Thr	Ala	Schilling & Overall, 2008
actin, alpha skeletal muscle	P68133	3-377	peptide-Glu74+His-peptide	N	MS	Tyr	Pro	Ile	Glu	His	Gly	Ile	Ile	Schilling & Overall, 2008
actin, alpha skeletal muscle	P68133	3-377	peptide-Glu59+Ala-peptide	N	MS	Val	Gly	Asp	Glu	Ala	Gln	Ser	Lys	Schilling & Overall, 2008
actin, aortic smooth muscle	P62736	243-256	LPD+GQVITIGNER	N	MS	-	Leu	Pro	Asp	Gly	Gln	Val	Ile	Schilling & Overall, 2008
actin, aortic smooth muscle	P62736	227-240	E+MATAASSSSLEK	N	MS	-	-	-	Glu	Met	Ala	Thr	Ala	Schilling & Overall, 2008
actin, aortic smooth muscle	P62736	3-377	peptide-Glu74+His-peptide	N	MS	Tyr	Pro	Ile	Glu	His	Gly	Ile	Ile	Schilling & Overall, 2008
actin, aortic smooth muscle	P62736	3-377	peptide-Glu59+Ala-peptide	N	MS	Val	Gly	Asp	Glu	Ala	Gln	Ser	Lys	Schilling & Overall, 2008
actin, cytoplasmic 1	P60709	241-254	LPD+GQVITIGNER	N	MS	-	Leu	Pro	Asp	Gly	Gln	Val	Ile	Schilling & Overall, 2008
actin, cytoplasmic 1	P60709	225-238	E+MATAASSSSLEK	N	MS	-	-	-	Glu	Met	Ala	Thr	Ala	Schilling & Overall, 2008
actin, cytoplasmic 1	P60709	2-375	peptide-Glu72+His-peptide	N	MS	Tyr	Pro	Ile	Glu	His	Gly	Ile	Val	Schilling & Overall, 2008
actin, cytoplasmic 1	P60709	2-375	peptide-Glu57+Ala-peptide	N	MS	Val	Gly	Asp	Glu	Ala	Gln	Ser	Lys	Schilling & Overall, 2008
actin, cytoplasmic 2	P63261	241-254	LPD+GQVITIGNER	N	MS	-	Leu	Pro	Asp	Gly	Gln	Val	Ile	Schilling & Overall, 2008
actin, cytoplasmic 2	P63261	225-238	E+MATAASSSSLEK	N	MS	-	-	-	Glu	Met	Ala	Thr	Ala	Schilling & Overall, 2008
actin, cytoplasmic 2	P63261	2-375	peptide-Glu72+His-peptide	N	MS	Tyr	Pro	Ile	Glu	His	Gly	Ile	Val	Schilling & Overall, 2008
actin, cytoplasmic 2	P63261	2-375	peptide-Glu57+Ala-peptide	N	MS	Val	Gly	Asp	Glu	Ala	Gln	Ser	Lys	Schilling & Overall, 2008
Actin, cytoplasmic 2	P63261		peptide-Asp286+Val-peptide	N	MS	Met	Lys	Cys	Asp	Val	Asp	Ile	Arg	Vidmar et al., 2017
Actin, cytoplasmic 2	P63261		peptide-Glu83+Lys-peptide	N	MS	Asp	Asp	Met	Glu	Lys	Ile	Trp	His	Vidmar et al., 2017
Actin, cytoplasmic 2	P63261		peptide-Gly46+Met-peptide	N	MS	Val	Met	Val	Gly	Met	Gly	Gln	Lys	Vidmar et al., 2017
Actin, cytoplasmic 2	P63261		peptide-Glu276+Thr-peptide	N	MS	Gly	Ile	His	Glu	Thr	Thr	Phe	Asn	Vidmar et al., 2017
Actin, cytoplasmic 2	P63261		peptide-Glu93+Leu-peptide	N	MS	Phe	Tyr	Asn	Glu	Leu	Arg	Val	Ala	Vidmar et al., 2017
Actin, cytoplasmic 2	P63261		peptide-Glu117+Lys-peptide	N	MS	Ala	Asn	Arg	Glu	Lys	Met	Thr	Gln	Vidmar et al., 2017
Actin, cytoplasmic 2	P63261		peptide-Glu241+Leu-peptide	N	MS	Lys	Ser	Tyr	Glu	Leu	Pro	Asp	Gly	Vidmar et al., 2017
Actin, cytoplasmic 2	P63261		peptide-Glu167+Gly-peptide	N	MS	Pro	Ile	Tyr	Glu	Gly	Tyr	Ala	Leu	Vidmar et al., 2017
Actin, cytoplasmic 2	P63261		peptide-Glu205+Arg-peptide	N	MS	Thr	Thr	Ala	Glu	Arg	Glu	Ile	Val	Vidmar et al., 2017
Actin, cytoplasmic 2	P63261		peptide-Glu195+Arg-peptide	N	MS	Ile	Leu	Thr	Glu	Arg	Gly	Tyr	Ser	Vidmar et al., 2017
Actin, cytoplasmic 2	P63261		peptide-Glu214+Lys-peptide	N	MS	Asp	Ile	Lys	Glu	Lys	Leu	Cys	Tyr	Vidmar et al., 2017
Actin, cytoplasmic 2	P63261		peptide-Asp179+Leu-peptide	N	MS	Leu	Arg	Leu	Asp	Leu	Ala	Gly	Arg	Vidmar et al., 2017
Actin, cytoplasmic 2	P63261		peptide-Asp292+Leu-peptide	N	MS	Ile	Arg	Lys	Asp	Leu	Tyr	Ala	Asn	Vidmar et al., 2017
Actin, cytoplasmic 2	P63261		peptide-Glu237+Lys-peptide	N	MS	Ser	Ser	Leu	Glu	Lys	Ser	Tyr	Glu	Vidmar et al., 2017
Actin, cytoplasmic 2	P63261		peptide-Glu364+Ser-peptide	N	MS	Glu	Tyr	Asp	Glu	Ser	Gly	Pro	Ser	Vidmar et al., 2017
Actin, cytoplasmic 2	P63261		peptide-Glu259+Ala-peptide	N	MS	Arg	Cys	Pro	Glu	Ala	Leu	Phe	Gln	Vidmar et al., 2017
Actin, cytoplasmic 2	P63261		peptide-Glu107+Ala-peptide	N	MS	Leu	Leu	Thr	Glu	Ala	Pro	Leu	Asn	Vidmar et al., 2017
Actin, cytoplasmic 2	P63261		peptide-Glu361+Tyr-peptide	N	MS	Ser	Lys	Gln	Glu	Tyr	Asp	Glu	Ser	Vidmar et al., 2017
Actin, cytoplasmic 2	P63261		peptide-Glu99+Glu-peptide	N	MS	Val	Ala	Pro	Glu	Glu	His	Pro	Val	Vidmar et al., 2017
actin, gamma-enteric smooth muscle	P63267	242-255	LPD+GQVITIGNER	N	MS	-	Leu	Pro	Asp	Gly	Gln	Val	Ile	Schilling & Overall, 2008
actin, gamma-enteric smooth muscle	P63267	226-239	E+MATAASSSSLEK	N	MS	-	-	-	Glu	Met	Ala	Thr	Ala	Schilling & Overall, 2008
actin, gamma-enteric smooth muscle	P63267	3-376	peptide-Glu73+His-peptide	N	MS	Tyr	Pro	Ile	Glu	His	Gly	Ile	Ile	Schilling & Overall, 2008
actin, gamma-enteric smooth muscle	P63267	3-376	peptide-Glu58+Ala-peptide	N	MS	Val	Gly	Asp	Glu	Ala	Gln	Ser	Lys	Schilling & Overall, 2008
Actin-related protein 2/3 complex subunit 1B	O15143		peptide-Glu363+Ser-peptide	N	MS	Lys	Ser	Leu	Glu	Ser	Ala	Leu	Lys	Vidmar et al., 2017
Actin-related protein 2/3 complex subunit 2	O15144		peptide-Glu5+Val-peptide	N	MS	Ile	Leu	Leu	Glu	Val	Asn	Asn	Arg	Vidmar et al., 2017
Actin-related protein 2/3 complex subunit 3	O15145		peptide-Glu127+Val-peptide	N	MS	Gln	Glu	Asp	Glu	Val	Met	Arg	Ala	Vidmar et al., 2017
actinin alpha 1 isoform b	Q1HE25	331-344	CQLE+INFNTLQTK	N	MS	Cys	Gln	Leu	Glu	Ile	Asn	Phe	Asn	Schilling & Overall, 2008
Activated RNA polymerase II transcriptional coactivator p15	P53999		peptide-Glu93+Gly-peptide	N	MS	Met	Asp	Pro	Glu	Gly	Glu	Met	Lys	Vidmar et al., 2017
Activated RNA polymerase II transcriptional coactivator p15	P53999		peptide-Glu108+Gln-peptide	N	MS	Leu	Asn	Pro	Glu	Gln	Trp	Ser	Gln	Vidmar et al., 2017
Activator of 90 kDa heat shock protein ATPase homolog 1	O95433		peptide-Glu303+Gly-peptide	N	MS	Leu	Cys	Met	Glu	Gly	Arg	Gly	Ile	Vidmar et al., 2017
Activator of 90 kDa heat shock protein ATPase homolog 1	O95433		peptide-Glu185+Arg-peptide	N	MS	Lys	Thr	Glu	Glu	Arg	Lys	Ala	Lys	Vidmar et al., 2017
ACTN3 protein	Q4VAM3	64-77	CQLE+INFNTLQTK	N	MS	Cys	Gln	Leu	Glu	Ile	Asn	Phe	Asn	Schilling & Overall, 2008
acyl carrier protein, mitochondrial precursor	O14561	137-152	LMCPQE+IVDYIADKK	N	MS	Cys	Pro	Gln	Glu	Ile	Val	Asp	Tyr	Schilling & Overall, 2008
acyl-CoA synthetase 4	Q8TAF6	459-475	DWQE+GGYTINDKPNPR	N	MS	Asp	Trp	Gln	Glu	Gly	Gly	Tyr	Thr	Schilling & Overall, 2008
Acyl-CoA-binding protein isoform 3	P07108-3	1-88	peptide-Glu25+Met-peptide	N	MS	Ser	Asp	Glu	Glu	Met	Leu	Phe	Ile	Schilling & Overall, 2008
Acyl-protein thioesterase 1	O75608		peptide-Glu204+Gly-peptide	N	MS	Lys	Thr	Tyr	Glu	Gly	Met	Met	His	Vidmar et al., 2017
Acylamino-acid-releasing enzyme	P13798		peptide-Glu174+Ser-peptide	N	MS	Pro	Lys	Ala	Glu	Ser	Phe	Phe	Gln	Vidmar et al., 2017
adenosine deaminase, RNA-specific isoform ADAR-a variant	Q59EC0	1021-1044	peptide-Glu1026+Gly-peptide	N	MS	Glu	Asn	Gly	Glu	Gly	Thr	Ile	Pro	Schilling & Overall, 2008
Adenosine kinase	P55263		peptide-Glu243+Ala-peptide	N	MS	Asn	Glu	Thr	Glu	Ala	Ala	Thr	Phe	Vidmar et al., 2017
adenosylhomocysteinase	P23526	151-166	GISEE+TTTGVHNLYK	N	MS	Ile	Ser	Glu	Glu	Thr	Thr	Thr	Gly	Schilling & Overall, 2008
adenosylhomocysteinase	P23526	2-432	peptide-Glu411+Lys-peptide	N	MS	Lys	Leu	Thr	Glu	Lys	Gln	Ala	Gln	Schilling & Overall, 2008
adenosylhomocysteinase	P23526	2-432	peptide-Asp182+Ser-peptide	N	MS	Asn	Val	Asn	Asp	Ser	Val	Thr	Lys	Schilling & Overall, 2008
Adenylate kinase 2, mitochondrial	P54819		peptide-Glu81+Leu-peptide	N	MS	Met	Val	Val	Glu	Leu	Ile	Glu	Lys	Vidmar et al., 2017
Adenylate kinase isoenzyme 1	P00568		peptide-Glu165+Lys-peptide	N	MS	Ala	Phe	Tyr	Glu	Lys	Arg	Gly	Ile	Vidmar et al., 2017
Adenylate kinase isoenzyme 1	P00568		peptide-Glu151+Thr-peptide	N	MS	Lys	Arg	Leu	Glu	Thr	Tyr	Tyr	Lys	Vidmar et al., 2017
adenylosuccinate synthetase isozyme 2	P30520	1-22	peptide-Glu5+Thr-peptide	N	MS	Ala	Phe	Ala	Glu	Thr	Tyr	Pro	Ala	Schilling & Overall, 2008
Adenylyl cyclase-associated protein 1	Q01518		peptide-Glu265+Ser-peptide	N	MS	Asn	Gln	Gly	Glu	Ser	Ile	Thr	His	Vidmar et al., 2017
Adenylyl cyclase-associated protein 1	Q01518		peptide-Glu136+Ser-peptide	N	MS	Ala	Val	Ser	Glu	Ser	Ile	Gln	Ala	Vidmar et al., 2017
Adenylyl cyclase-associated protein 1	Q01518		peptide-Glu114+Val-peptide	N	MS	Gln	Ile	Lys	Glu	Val	Ile	Thr	Phe	Vidmar et al., 2017
Adenylyl cyclase-associated protein 1	Q01518		peptide-Glu19+Ala-peptide	N	MS	Gly	Arg	Leu	Glu	Ala	Val	Ser	His	Vidmar et al., 2017
Adenylyl cyclase-associated protein 1	Q01518		peptide-Glu156+Met-peptide	N	MS	Tyr	Val	Lys	Glu	Met	Asn	Asp	Ala	Vidmar et al., 2017
Adenylyl cyclase-associated protein 1	Q01518		peptide-Glu455+Gln-peptide	N	MS	Pro	Val	Pro	Glu	Gln	Phe	Lys	Thr	Vidmar et al., 2017
Adenylyl cyclase-associated protein 1	Q01518		peptide-Glu120+Lys-peptide	N	MS	Thr	Phe	Arg	Glu	Lys	Asn	Arg	Gly	Vidmar et al., 2017
Adenylyl cyclase-associated protein 1	Q01518		peptide-Glu74+Met-peptide	N	MS	Lys	His	Ala	Glu	Met	Val	His	Thr	Vidmar et al., 2017
Adenylyl cyclase-associated protein 1	Q01518		peptide-Glu64+Ile-peptide	N	MS	Ile	Ser	Lys	Glu	Ile	Gly	Gly	Asp	Vidmar et al., 2017
Adenylyl cyclase-associated protein 1	Q01518		peptide-Glu199+Phe-peptide	N	MS	Tyr	Ile	Lys	Glu	Phe	His	Thr	Thr	Vidmar et al., 2017
ADP-ribosylation factor 1	P84077		peptide-Glu168+Gly-peptide	N	MS	Gly	Leu	Tyr	Glu	Gly	Leu	Asp	Trp	Vidmar et al., 2017
ADP-ribosylation factor 3	P61204		peptide-Glu168+Gly-peptide	N	MS	Gly	Leu	Tyr	Glu	Gly	Leu	Asp	Trp	Vidmar et al., 2017
ADP-ribosylation factor 6	P62330		peptide-Glu111+Met-peptide	N	MS	Asn	Asp	Arg	Glu	Met	Arg	Asp	Ala	Vidmar et al., 2017
ADP-ribosylation factor 6	P62330		peptide-Glu137+Lys-peptide	N	MS	Glu	Ile	Gln	Glu	Lys	Leu	Gly	Leu	Vidmar et al., 2017
ADP-ribosylation factor 6	P62330		peptide-Glu164+Gly-peptide	N	MS	Gly	Leu	Tyr	Glu	Gly	Leu	Thr	Trp	Vidmar et al., 2017
ADP-ribosylation factor-like protein 2-binding protein	Q9Y2Y0		peptide-Glu133+Gly-peptide	N	MS	Ala	Glu	Lys	Glu	Gly	Arg	Gly	Leu	Vidmar et al., 2017
ADP-ribosylation factor-like protein 6-interacting protein 1	Q15041		peptide-Glu190+Ile-peptide	N	MS	Ala	Lys	Arg	Glu	Ile	Asn	Lys	Leu	Vidmar et al., 2017
ADP-ribosylation factor-like protein 8B	Q9NVJ2		peptide-Glu166+Lys-peptide	N	MS	Ser	Cys	Lys	Glu	Lys	Asp	Asn	Ile	Vidmar et al., 2017
aflatoxin B1 aldehyde reductase member 2	O43488	66-99	peptide-Glu83+Thr-peptide	N	MS	Gly	Gln	Ser	Glu	Thr	Ile	Leu	Gly	Schilling & Overall, 2008
Aflatoxin B1 aldehyde reductase member 2	O43488		peptide-Glu151+Thr-peptide	N	MS	Pro	Val	Glu	Glu	Thr	Leu	His	Ala	Vidmar et al., 2017
Aflatoxin B1 aldehyde reductase member 2	O43488		peptide-Glu124+Thr-peptide	N	MS	Ser	Gln	Leu	Glu	Thr	Ser	Leu	Lys	Vidmar et al., 2017
AH receptor-interacting protein	O00170		peptide-Glu20+Gly-peptide	N	MS	Val	Ile	Gln	Glu	Gly	Arg	Gly	Glu	Vidmar et al., 2017
AH receptor-interacting protein	O00170		peptide-Glu174+Lys-peptide	N	MS	Thr	Asp	Glu	Glu	Lys	Ala	Lys	Ala	Vidmar et al., 2017
AH receptor-interacting protein	O00170		peptide-Glu10+Asp-peptide	N	MS	Arg	Leu	Arg	Glu	Asp	Gly	Ile	Gln	Vidmar et al., 2017
AH receptor-interacting protein	O00170		peptide-Glu293+Leu-peptide	N	MS	Lys	Val	Leu	Glu	Leu	Asp	Pro	Ala	Vidmar et al., 2017
Alanine--tRNA ligase, cytoplasmic	P49588		peptide-Glu861+Met-peptide	N	MS	Val	Ile	Leu	Glu	Met	Glu	Ser	Gly	Vidmar et al., 2017
Alanine--tRNA ligase, cytoplasmic	P49588		peptide-Glu431+Lys-peptide	N	MS	Ile	Ala	Glu	Glu	Lys	Gly	Leu	Val	Vidmar et al., 2017
Alanine--tRNA ligase, cytoplasmic	P49588		peptide-Glu9+Ile-peptide	N	MS	Thr	Ala	Ser	Glu	Ile	Arg	Gln	Arg	Vidmar et al., 2017
Alanine--tRNA ligase, cytoplasmic	P49588		peptide-Glu778+Ala-peptide	N	MS	Ser	Val	Met	Glu	Ala	Lys	Val	Lys	Vidmar et al., 2017
alanyl-tRNA synthetase, cytoplasmic	P49588	793-812	EIADLGE+ALATAVIPQWQK	N	MS	Asp	Leu	Gly	Glu	Ala	Leu	Ala	Thr	Schilling & Overall, 2008
alanyl-tRNA synthetase, cytoplasmic	P49588	1-968	peptide-Glu950+Ala-peptide	N	MS	Cys	Leu	Gln	Glu	Ala	Leu	Gln	Leu	Schilling & Overall, 2008
Alcohol dehydrogenase class-3	P11766		peptide-Glu334+Tyr-peptide	N	MS	Leu	Val	Ser	Glu	Tyr	Met	Ser	Lys	Vidmar et al., 2017
Alcohol dehydrogenase class-3	P11766		peptide-Glu344+Phe-peptide	N	MS	Lys	Val	Asp	Glu	Phe	Val	Thr	His	Vidmar et al., 2017
Alcohol dehydrogenase [NADP(+)]	P14550		peptide-Glu58+Ala-peptide	N	MS	Glu	Ile	Gly	Glu	Ala	Leu	Lys	Glu	Vidmar et al., 2017
Alcohol dehydrogenase [NADP(+)]	P14550		peptide-Glu55+Ile-peptide	N	MS	Asn	Glu	Pro	Glu	Ile	Gly	Glu	Ala	Vidmar et al., 2017
Aldehyde dehydrogenase X, mitochondrial	P30837		peptide-Glu70+Gly-peptide	N	MS	His	Val	Ala	Glu	Gly	Asp	Arg	Ala	Vidmar et al., 2017
aldehyde dehydrogenase X, mitochondrial precursor	P30837	414-426	EE+IFGPVQPLFK	N	MS	-	-	Glu	Glu	Ile	Phe	Gly	Pro	Schilling & Overall, 2008
aldo-keto reductase family 1 member C1	Q04828	173-183	E+MILNKPGLK	N	MS	-	-	-	Glu	Met	Ile	Leu	Asn	Schilling & Overall, 2008
aldo-keto reductase family 1 member C2	P52895	173-183	E+MILNKPGLK	N	MS	-	-	-	Glu	Met	Ile	Leu	Asn	Schilling & Overall, 2008
aldo-keto reductase family 1 member C3	P42330	173-183	E+MILNKPGLK	N	MS	-	-	-	Glu	Met	Ile	Leu	Asn	Schilling & Overall, 2008
aldo-keto reductase family 1 member C4	P17516	173-183	E+MILNKPGLK	N	MS	-	-	-	Glu	Met	Ile	Leu	Asn	Schilling & Overall, 2008
aldo-keto reductase family 1, member B1 variant	Q59EL5	164-174	E+MILNKPGLK	N	MS	-	-	-	Glu	Met	Ile	Leu	Asn	Schilling & Overall, 2008
aldose reductase	P15121	167-177	E+MILNKPGLK	N	MS	-	-	-	Glu	Met	Ile	Leu	Asn	Schilling & Overall, 2008
alkyl hydroperoxide reductase subunit F	P35340	1-521	peptide-Glu306+Thr-peptide	N	MS	His	Gln	Ile	Glu	Thr	Ala	Ser	Gly	Timmer et al., 2009
alpha-1-antichymotrypsin	P01011	24-423	peptide-Glu14+Asn-peptide	P		Leu	Thr	Gln	Glu	Asn	Gln	Asp	Arg		17441
alpha-1-peptidase inhibitor	P01009	25-418	peptide-Glu354+Ala-peptide	P		Met	Phe	Leu	Glu	Ala	Ile	Pro	Met	Potempa et al., 1986	19717
alpha-2-antiplasmin	P08697	40-491	peptide-Arg403+Met-peptide	P		Ala	Met	Ser	Arg	Met	Ser	Leu	Ser	Shieh & Travis, 1987	24031
alpha-2-macroglobulin	P01023	24-1474	peptide-Glu709+Ser-peptide	P		Gly	Phe	Tyr	Glu	Ser	Asp	Val	Met	Mortensen et al., 1981
Alpha-2-macroglobulin receptor-associated protein	P30533		peptide-Glu175+Phe-peptide	N	MS	Leu	Trp	Arg	Glu	Phe	Leu	His	His	Vidmar et al., 2017
alpha-actinin-1	P12814	331-344	CQLE+INFNTLQTK	N	MS	Cys	Gln	Leu	Glu	Ile	Asn	Phe	Asn	Schilling & Overall, 2008
Alpha-actinin-1	P12814		peptide-Glu314+Asp-peptide	N	MS	Gln	Lys	Leu	Glu	Asp	Phe	Arg	Asp	Vidmar et al., 2017
Alpha-actinin-1	P12814		peptide-Glu441+Ser-peptide	N	MS	Glu	Ala	Phe	Glu	Ser	Asp	Leu	Ala	Vidmar et al., 2017
Alpha-actinin-1	P12814		peptide-Glu564+Arg-peptide	N	MS	Ala	Asp	Lys	Glu	Arg	Leu	Ala	Ile	Vidmar et al., 2017
Alpha-actinin-1	P12814		peptide-Glu526+Gly-peptide	N	MS	Asn	Trp	Met	Glu	Gly	Ala	Met	Glu	Vidmar et al., 2017
Alpha-actinin-1	P12814		peptide-Glu665+Asp-peptide	N	MS	Gly	Thr	Leu	Glu	Asp	Gln	Leu	Ser	Vidmar et al., 2017
Alpha-actinin-1	P12814		peptide-Glu429+Ile-peptide	N	MS	Thr	Leu	Ser	Glu	Ile	Lys	Ala	Leu	Vidmar et al., 2017
Alpha-actinin-1	P12814		peptide-Glu303+Asn-peptide	N	MS	Arg	Val	Pro	Glu	Asn	Thr	Met	His	Vidmar et al., 2017
Alpha-actinin-1	P12814		peptide-Glu718+Gln-peptide	N	MS	Val	Gly	Trp	Glu	Gln	Leu	Leu	Thr	Vidmar et al., 2017
Alpha-actinin-1	P12814		peptide-Glu543+Ile-peptide	N	MS	Thr	Ile	Glu	Glu	Ile	Gln	Gly	Leu	Vidmar et al., 2017
Alpha-actinin-1	P12814		peptide-Glu414+Ala-peptide	N	MS	Asp	Gly	Lys	Glu	Ala	Met	Leu	Arg	Vidmar et al., 2017
alpha-actinin-2	P35609	338-351	CQLE+INFNTLQTK	N	MS	Cys	Gln	Leu	Glu	Ile	Asn	Phe	Asn	Schilling & Overall, 2008
Alpha-actinin-3	Q08043		peptide-Glu411+Lys-peptide	N	MS	His	Leu	Ala	Glu	Lys	Phe	Arg	Gln	Vidmar et al., 2017
alpha-actinin-4	O43707	350-363	CQLE+INFNTLQTK	N	MS	Cys	Gln	Leu	Glu	Ile	Asn	Phe	Asn	Schilling & Overall, 2008
alpha-actinin-4	O43707	1-911	peptide-Glu866+Leu-peptide	N	MS	Thr	Ala	Glu	Glu	Leu	Arg	Arg	Glu	Schilling & Overall, 2008
alpha-actinin-4	O43707	1-911	peptide-Glu671+Ile-peptide	N	MS	Lys	Met	Glu	Glu	Ile	Gly	Arg	Ile	Schilling & Overall, 2008
Alpha-actinin-4	O43707		peptide-Glu442+Thr-peptide	N	MS	Arg	Asp	Tyr	Glu	Thr	Ala	Thr	Leu	Vidmar et al., 2017
Alpha-actinin-4	O43707		peptide-Glu333+Asp-peptide	N	MS	Gln	Lys	Leu	Glu	Asp	Phe	Arg	Asp	Vidmar et al., 2017
Alpha-actinin-4	O43707		peptide-Glu624+Lys-peptide	N	MS	Ser	Lys	Trp	Glu	Lys	Val	Gln	Gln	Vidmar et al., 2017
Alpha-actinin-4	O43707		peptide-Glu211+Tyr-peptide	N	MS	Glu	Leu	Ile	Glu	Tyr	Asp	Lys	Leu	Vidmar et al., 2017
Alpha-actinin-4	O43707		peptide-Glu564+Gly-peptide	N	MS	Glu	Glu	Ile	Glu	Gly	Leu	Ile	Ser	Vidmar et al., 2017
Alpha-actinin-4	O43707		peptide-Glu482+Leu-peptide	N	MS	Glu	Leu	Asn	Glu	Leu	Asp	Tyr	Tyr	Vidmar et al., 2017
Alpha-actinin-4	O43707		peptide-Glu562+Ile-peptide	N	MS	Thr	Ile	Glu	Glu	Ile	Glu	Gly	Leu	Vidmar et al., 2017
Alpha-adducin	P35611		peptide-Glu549+Tyr-peptide	N	MS	Ile	Glu	Lys	Glu	Tyr	Gln	Pro	His	Vidmar et al., 2017
Alpha-aminoadipic semialdehyde dehydrogenase	P49419		peptide-Glu112+Ile-peptide	N	MS	Lys	Arg	Gly	Glu	Ile	Val	Arg	Gln	Vidmar et al., 2017
alpha-enolase	P06733	1-434	peptide-Glu45+Ala-peptide	N	MS	Gly	Ile	Tyr	Glu	Ala	Leu	Glu	Leu	Schilling & Overall, 2008
Alpha-enolase	P06733		peptide-Gly107+Ala-peptide	N	MS	Ser	Lys	Phe	Gly	Ala	Asn	Ala	Ile	Vidmar et al., 2017
Alpha-enolase	P06733		peptide-Glu225+Leu-peptide	N	MS	Glu	Gly	Leu	Glu	Leu	Leu	Lys	Thr	Vidmar et al., 2017
Alpha-enolase	P06733		peptide-Glu96+Met-peptide	N	MS	Leu	Met	Ile	Glu	Met	Asp	Gly	Thr	Vidmar et al., 2017
Alpha-enolase	P06733		peptide-Glu21+Val-peptide	N	MS	Pro	Thr	Val	Glu	Val	Asp	Leu	Phe	Vidmar et al., 2017
Alpha-enolase	P06733		peptide-Glu67+His-peptide	N	MS	Lys	Ala	Val	Glu	His	Ile	Asn	Lys	Vidmar et al., 2017
Alpha-enolase	P06733		peptide-Ala424+Gly-peptide	N	MS	Ala	Lys	Phe	Ala	Gly	Arg	Asn	Phe	Vidmar et al., 2017
Alpha-enolase	P06733		peptide-Glu142+Val-peptide	N	MS	Gly	Asn	Ser	Glu	Val	Ile	Leu	Pro	Vidmar et al., 2017
Alpha-enolase	P06733		peptide-Glu180+Ala-peptide	N	MS	Asn	Phe	Arg	Glu	Ala	Met	Arg	Ile	Vidmar et al., 2017
Alpha-enolase	P06733		peptide-Glu334+Lys-peptide	N	MS	Ala	Val	Asn	Glu	Lys	Ser	Cys	Asn	Vidmar et al., 2017
Alpha-enolase	P06733		peptide-Glu210+Gly-peptide	N	MS	Val	Gly	Asp	Glu	Gly	Gly	Phe	Ala	Vidmar et al., 2017
Alpha-enolase	P06733		peptide-Glu198+Lys-peptide	N	MS	Val	Ile	Lys	Glu	Lys	Tyr	Gly	Lys	Vidmar et al., 2017
Alpha-enolase	P06733		peptide-Glu10+Ile-peptide	N	MS	His	Ala	Arg	Glu	Ile	Phe	Asp	Ser	Vidmar et al., 2017
Alpha-enolase	P06733		peptide-Glu167+Phe-peptide	N	MS	Ala	Met	Gln	Glu	Phe	Met	Ile	Leu	Vidmar et al., 2017
Alpha-enolase	P06733		peptide-Glu187+Val-peptide	N	MS	Ile	Gly	Ala	Glu	Val	Tyr	His	Asn	Vidmar et al., 2017
Alpha-enolase	P06733		peptide-Glu125+Lys-peptide	N	MS	Gly	Ala	Val	Glu	Lys	Gly	Val	Pro	Vidmar et al., 2017
Alpha-enolase	P06733		peptide-Glu86+Gln-peptide	N	MS	Asn	Val	Thr	Glu	Gln	Glu	Lys	Ile	Vidmar et al., 2017
Alpha-enolase	P06733		peptide-Glu48+Leu-peptide	N	MS	Glu	Ala	Leu	Glu	Leu	Arg	Asp	Asn	Vidmar et al., 2017
Alpha-enolase	P06733		peptide-Glu416+Leu-peptide	N	MS	Ile	Glu	Glu	Glu	Leu	Gly	Ser	Lys	Vidmar et al., 2017
Alpha-enolase	P06733		peptide-Glu352+Ser-peptide	N	MS	Ser	Val	Thr	Glu	Ser	Leu	Gln	Ala	Vidmar et al., 2017
Alpha-enolase	P06733		peptide-Glu402+Arg-peptide	N	MS	Cys	Arg	Ser	Glu	Arg	Leu	Ala	Lys	Vidmar et al., 2017
Alpha-taxilin	P40222		peptide-Glu230+His-peptide	N	MS	Leu	Arg	Gly	Glu	His	Ser	Lys	Ala	Vidmar et al., 2017
Alpha-taxilin	P40222		peptide-Glu42+Ala-peptide	N	MS	Pro	Ala	Val	Glu	Ala	Glu	Gly	Pro	Vidmar et al., 2017
Alpha-taxilin	P40222		peptide-Glu396+Phe-peptide	N	MS	Lys	Phe	Glu	Glu	Phe	Gln	Asn	Thr	Vidmar et al., 2017
Alpha-taxilin	P40222		peptide-Glu258+Gly-peptide	N	MS	Leu	Lys	Glu	Glu	Gly	Val	Gln	Arg	Vidmar et al., 2017
Alpha-taxilin	P40222		peptide-Glu406+Val-peptide	N	MS	Lys	Ser	Ser	Glu	Val	Phe	Thr	Thr	Vidmar et al., 2017
Alpha-taxilin	P40222		peptide-Glu24+Ala-peptide	N	MS	Gly	Gln	Pro	Glu	Ala	Gly	Pro	Glu	Vidmar et al., 2017
Alpha-taxilin	P40222		peptide-Glu531+Ala-peptide	N	MS	Pro	Ser	Thr	Glu	Ala	Ser	Gly	Gln	Vidmar et al., 2017
Amyloid-like protein 2	Q06481		peptide-Glu426+Arg-peptide	N	MS	Pro	Lys	Ala	Glu	Arg	Gln	Thr	Leu	Vidmar et al., 2017
Annexin	A6NN80	1-667	GLGTDE+DTIIDIITHR	N	MS	Gly	Thr	Asp	Glu	Asp	Thr	Ile	Ile	Schilling & Overall, 2008
Annexin	A6NN80	1-667	peptide-Glu27+Ala-peptide	N	MS	Gln	Asp	Ala	Glu	Ala	Leu	Tyr	Thr	Schilling & Overall, 2008
Annexin	A6NN80	1-667	peptide-Glu168+Asp-peptide	N	MS	Thr	Arg	Glu	Glu	Asp	Asp	Val	Val	Schilling & Overall, 2008
annexin A1	P04083	58-71	GVDE+ATIIDILTK	N	MS	Gly	Val	Asp	Glu	Ala	Thr	Ile	Ile	Schilling & Overall, 2008
annexin A1	P04083	2-346	peptide-Glu190+Asp-peptide	N	MS	Asp	Arg	Ser	Glu	Asp	Phe	Gly	Val	Schilling & Overall, 2008
Annexin A1	P04083		peptide-Glu158+Glu-peptide	N	MS	Val	Tyr	Arg	Glu	Glu	Leu	Lys	Arg	Vidmar et al., 2017
Annexin A1	P04083		peptide-Glu159+Leu-peptide	N	MS	Tyr	Arg	Glu	Glu	Leu	Lys	Arg	Asp	Vidmar et al., 2017
Annexin A1	P04083		peptide-Glu196+Asp-peptide	N	MS	Gly	Val	Asn	Glu	Asp	Leu	Ala	Asp	Vidmar et al., 2017
Annexin A1	P04083		peptide-Glu6+Phe-peptide	N	MS	Met	Val	Ser	Glu	Phe	Leu	Lys	Gln	Vidmar et al., 2017
Annexin A1	P04083		peptide-Glu148+Ile-peptide	N	MS	Thr	Asn	Lys	Glu	Ile	Arg	Asp	Ile	Vidmar et al., 2017
Annexin A1	P04083		peptide-Glu139+Ile-peptide	N	MS	Thr	Leu	Ile	Glu	Ile	Leu	Ala	Ser	Vidmar et al., 2017
Annexin A1	P04083		peptide-Glu94+Thr-peptide	N	MS	Pro	Leu	Asp	Glu	Thr	Leu	Lys	Lys	Vidmar et al., 2017
annexin A2	Q8TBV2	10-28	LSLE+GDHSTPPSAYGSVK	N	MS	Leu	Ser	Leu	Glu	Gly	Asp	His	Ser	Schilling & Overall, 2008
annexin A2	P07355	10-28	LSLE+GDHSTPPSAYGSVK	N	MS	Leu	Ser	Leu	Glu	Gly	Asp	His	Ser	Schilling & Overall, 2008
annexin A2	Q8TBV2	49-63	GVDE+VTIVNILTNR	N	MS	Gly	Val	Asp	Glu	Val	Thr	Ile	Val	Schilling & Overall, 2008
annexin A2	P07355	49-63	GVDE+VTIVNILTNR	N	MS	Gly	Val	Asp	Glu	Val	Thr	Ile	Val	Schilling & Overall, 2008
annexin A2	Q8TBV2	1-339	peptide-Glu96+Thr-peptide	N	MS	Gly	His	Leu	Glu	Thr	Val	Ile	Leu	Schilling & Overall, 2008
annexin A2	P07355	2-339	peptide-Glu96+Thr-peptide	N	MS	Gly	His	Leu	Glu	Thr	Val	Ile	Leu	Schilling & Overall, 2008
Annexin A2	P07355		peptide-Glu156+Lys-peptide	N	MS	Thr	Asp	Leu	Glu	Lys	Asp	Ile	Ile	Vidmar et al., 2017
Annexin A2	P07355		peptide-Glu189+Leu-peptide	N	MS	Ile	Asp	Tyr	Glu	Leu	Ile	Asp	Gln	Vidmar et al., 2017
Annexin A2	P07355		peptide-Glu113+Leu-peptide	N	MS	Asp	Ala	Ser	Glu	Leu	Lys	Ala	Ser	Vidmar et al., 2017
Annexin A2	P07355		peptide-Glu242+Ser-peptide	N	MS	Asp	Met	Leu	Glu	Ser	Ile	Arg	Lys	Vidmar et al., 2017
Annexin A2	P07355		peptide-Glu297+Val-peptide	N	MS	Ser	Arg	Ser	Glu	Val	Asp	Met	Leu	Vidmar et al., 2017
Annexin A2	P07355		peptide-Glu219+Arg-peptide	N	MS	Ile	Met	Thr	Glu	Arg	Ser	Val	Pro	Vidmar et al., 2017
Annexin A2	P07355		peptide-Glu6+Ile-peptide	N	MS	Thr	Val	His	Glu	Ile	Leu	Cys	Lys	Vidmar et al., 2017
Annexin A2	P07355		peptide-Glu130+Ile-peptide	N	MS	Ser	Leu	Ile	Glu	Ile	Ile	Cys	Ser	Vidmar et al., 2017
Annexin A2	P07355		peptide-Glu43+Thr-peptide	N	MS	Leu	Asn	Ile	Glu	Thr	Ala	Ile	Lys	Vidmar et al., 2017
Annexin A2	P07355		peptide-Glu82+Leu-peptide	N	MS	Thr	Lys	Lys	Glu	Leu	Ala	Ser	Ala	Vidmar et al., 2017
annexin A2 isoform 2	P07355-2	28-46	LSLE+GDHSTPPSAYGSVK	N	MS	Leu	Ser	Leu	Glu	Gly	Asp	His	Ser	Schilling & Overall, 2008
annexin A2 isoform 2	P07355-2	67-81	GVDE+VTIVNILTNR	N	MS	Gly	Val	Asp	Glu	Val	Thr	Ile	Val	Schilling & Overall, 2008
annexin A2 isoform 2	P07355-2	1-357	peptide-Glu114+Thr-peptide	N	MS	Gly	His	Leu	Glu	Thr	Val	Ile	Leu	Schilling & Overall, 2008
Annexin A3	P12429		peptide-Glu172+His-peptide	N	MS	Lys	Val	Asp	Glu	His	Leu	Ala	Lys	Vidmar et al., 2017
Annexin A3	P12429		peptide-Glu115+Ile-peptide	N	MS	Ala	Leu	Ile	Glu	Ile	Leu	Thr	Thr	Vidmar et al., 2017
Annexin A3	P12429		peptide-Asp95+Ala-peptide	N	MS	Ala	Val	Phe	Asp	Ala	Lys	Gln	Leu	Vidmar et al., 2017
Annexin A3	P12429		peptide-Glu38+Lys-peptide	N	MS	Gly	Thr	Asp	Glu	Lys	Met	Leu	Ile	Vidmar et al., 2017
Annexin A3	P12429		peptide-Glu281+Ile-peptide	N	MS	Ser	Arg	Ser	Glu	Ile	Asp	Leu	Leu	Vidmar et al., 2017
Annexin A3	P12429		peptide-Glu81+His-peptide	N	MS	Gly	His	Phe	Glu	His	Leu	Met	Val	Vidmar et al., 2017
Annexin A3	P12429		peptide-Glu25+Ala-peptide	N	MS	Val	Asp	Ala	Glu	Ala	Ile	Gln	Lys	Vidmar et al., 2017
Annexin A3	P12429		peptide-Glu147+Thr-peptide	N	MS	Ile	Ser	Ser	Glu	Thr	Ser	Gly	Asp	Vidmar et al., 2017
Annexin A3	P12429		peptide-Glu47+Arg-peptide	N	MS	Ile	Leu	Thr	Glu	Arg	Ser	Asn	Ala	Vidmar et al., 2017
Annexin A3	P12429		peptide-Glu59+Tyr-peptide	N	MS	Ile	Val	Lys	Glu	Tyr	Gln	Ala	Ala	Vidmar et al., 2017
Annexin A3	P12429		peptide-Glu312+Ile-peptide	N	MS	Gly	Asp	Tyr	Glu	Ile	Thr	Leu	Leu	Vidmar et al., 2017
Annexin A4	P09525		peptide-Glu94+Leu-peptide	N	MS	Asp	Val	Gln	Glu	Leu	Arg	Arg	Ala	Vidmar et al., 2017
Annexin A5	P08758		peptide-Glu52+Ile-peptide	N	MS	Gln	Arg	Gln	Glu	Ile	Ser	Ala	Ala	Vidmar et al., 2017
Annexin A5	P08758		peptide-Glu112+Ile-peptide	N	MS	Val	Leu	Thr	Glu	Ile	Ile	Ala	Ser	Vidmar et al., 2017
Annexin A5	P08758		peptide-Glu121+Leu-peptide	N	MS	Thr	Pro	Glu	Glu	Leu	Arg	Ala	Ile	Vidmar et al., 2017
Annexin A5	P08758		peptide-Glu95+Leu-peptide	N	MS	Asp	Ala	Tyr	Glu	Leu	Lys	His	Ala	Vidmar et al., 2017
Annexin A5	P08758		peptide-Glu22+Thr-peptide	N	MS	Ala	Asp	Ala	Glu	Thr	Leu	Arg	Lys	Vidmar et al., 2017
Annexin A5	P08758		peptide-Glu78+Lys-peptide	N	MS	Gly	Lys	Phe	Glu	Lys	Leu	Ile	Val	Vidmar et al., 2017
Annexin A5	P08758		peptide-Glu36+Ser-peptide	N	MS	Thr	Asp	Glu	Glu	Ser	Ile	Leu	Thr	Vidmar et al., 2017
Annexin A6	P08133		peptide-Glu544+Thr-peptide	N	MS	Thr	Ser	Leu	Glu	Thr	Arg	Phe	Met	Vidmar et al., 2017
Annexin A6	P08133		peptide-Glu100+Ile-peptide	N	MS	Asp	Ala	Lys	Glu	Ile	Lys	Asp	Ala	Vidmar et al., 2017
Annexin A6	P08133		peptide-Glu531+Ile-peptide	N	MS	Glu	Ile	Leu	Glu	Ile	Ala	Asp	Thr	Vidmar et al., 2017
Annexin A6	P08133		peptide-Glu41+Ala-peptide	N	MS	Ser	Asp	Lys	Glu	Ala	Ile	Leu	Asp	Vidmar et al., 2017
Annexin A6	P08133		peptide-Glu486+Asp-peptide	N	MS	Lys	Ser	Leu	Glu	Asp	Ala	Leu	Ser	Vidmar et al., 2017
antigen MLAA-42	Q6W6M8	102-123	peptide-Glu109+Ile-peptide	N	MS	Tyr	Leu	Asn	Glu	Ile	Lys	Asp	Ser	Schilling & Overall, 2008
antigen MLAA-42	Q6W6M8	68-82	YLAE+KYEWDVAEAR	N	MS	Tyr	Leu	Ala	Glu	Lys	Tyr	Glu	Trp	Schilling & Overall, 2008
AP-1 complex subunit beta-1	Q10567		peptide-Glu562+Leu-peptide	N	MS	Leu	Leu	Asp	Glu	Leu	Ile	Cys	Tyr	Vidmar et al., 2017
AP-1 complex subunit beta-1	Q10567		peptide-Glu539+Val-peptide	N	MS	Ala	Ala	Lys	Glu	Val	Val	Leu	Ala	Vidmar et al., 2017
Apoptosis regulator BAX	Q07812		peptide-Glu44+Leu-peptide	N	MS	Glu	Ala	Pro	Glu	Leu	Ala	Leu	Asp	Vidmar et al., 2017
Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2	O43150		peptide-Met705+Asp-peptide	N	MS	Asp	Asp	Asp	Met	Asp	Glu	Lys	Leu	Vidmar et al., 2017
Arfaptin-2	P53365		peptide-Glu21+Ala-peptide	N	MS	Gly	Asn	Gly	Glu	Ala	Arg	Gln	Leu	Vidmar et al., 2017
argininosuccinate synthase	P00966	1-412	peptide-Glu224+Ile-peptide	N	MS	Asp	Ile	Leu	Glu	Ile	Glu	Phe	Lys	Schilling & Overall, 2008
armadillo repeat-containing protein 6	Q6NXE6	1-501	peptide-Asp90+Ile-peptide	N	MS	Pro	Thr	His	Asp	Ile	Leu	Gln	Met	Schilling & Overall, 2008
Asparagine--tRNA ligase, cytoplasmic	O43776		peptide-Glu84+Ala-peptide	N	MS	Glu	Lys	Lys	Glu	Ala	Glu	Asp	Ser	Vidmar et al., 2017
Asparagine--tRNA ligase, cytoplasmic	O43776		peptide-Glu53+Arg-peptide	N	MS	Lys	Glu	Asn	Glu	Arg	Trp	Asn	Val	Vidmar et al., 2017
asparaginyl-tRNA synthetase, cytoplasmic (EC 6.1.1.22)	O43776	2-548	peptide-Glu51+Asn-peptide	N	MS	Ser	Gln	Lys	Glu	Asn	Glu	Arg	Trp	Schilling & Overall, 2008
aspartate aminotransferase, cytoplasmic	P17174	276-290	EPE+SILQVLSQMEK	N	MS	-	Glu	Pro	Glu	Ser	Ile	Leu	Gln	Schilling & Overall, 2008
Aspartate aminotransferase, cytoplasmic	P17174		peptide-Glu58+Gln-peptide	N	MS	Lys	Lys	Val	Glu	Gln	Lys	Ile	Ala	Vidmar et al., 2017
Aspartate aminotransferase, mitochondrial	P00505		peptide-Glu49+Ala-peptide	N	MS	Gly	Val	Thr	Glu	Ala	Phe	Lys	Arg	Vidmar et al., 2017
Aspartate aminotransferase, mitochondrial	P00505		peptide-Glu397+Phe-peptide	N	MS	Leu	Ile	Lys	Glu	Phe	Ser	Ile	Tyr	Vidmar et al., 2017
Aspartate aminotransferase, mitochondrial	P00505		peptide-Gly65+Ala-peptide	N	MS	Leu	Gly	Val	Gly	Ala	Tyr	Arg	Asp	Vidmar et al., 2017
Aspartate aminotransferase, mitochondrial	P00505		peptide-Glu84+Ala-peptide	N	MS	Arg	Lys	Ala	Glu	Ala	Gln	Ile	Ala	Vidmar et al., 2017
aspartyl-tRNA synthetase, cytoplasmic	P14868	1-501	peptide-Glu347+Tyr-peptide	N	MS	Leu	Arg	Leu	Glu	Tyr	Cys	Glu	Ala	Schilling & Overall, 2008
Aspartyl/asparaginyl beta-hydroxylase	Q12797		peptide-Glu344+Leu-peptide	N	MS	Ile	Lys	Ala	Glu	Leu	Asp	Ala	Ala	Vidmar et al., 2017
Aspartyl/asparaginyl beta-hydroxylase	Q12797		peptide-Glu244+Asp-peptide	N	MS	Pro	Val	Val	Glu	Asp	Glu	Arg	Leu	Vidmar et al., 2017
Aspartyl/asparaginyl beta-hydroxylase	Q12797		peptide-Glu185+Phe-peptide	N	MS	Glu	Asp	Asp	Glu	Phe	Leu	Met	Ala	Vidmar et al., 2017
Astrocytic phosphoprotein PEA-15	Q15121		peptide-Glu18+Asp-peptide	N	MS	Ile	Thr	Leu	Glu	Asp	Leu	Glu	Gln	Vidmar et al., 2017
Astrocytic phosphoprotein PEA-15	Q15121		peptide-Glu50+Ser-peptide	N	MS	Ser	Phe	Leu	Glu	Ser	His	Asn	Lys	Vidmar et al., 2017
Astrocytic phosphoprotein PEA-15	Q15121		peptide-Glu68+Ile-peptide	N	MS	His	Ile	Phe	Glu	Ile	Ser	Arg	Arg	Vidmar et al., 2017
ataxin-10	Q9UBB4	1-475	peptide-Glu312+Met-peptide	N	MS	Val	Leu	Cys	Glu	Met	Thr	Val	Asn	Schilling & Overall, 2008
ATOX1 protein	Q6IBA3	39-56	VCIE+SEHSMDTLLATLK	N	MS	Val	Cys	Ile	Glu	Ser	Glu	His	Ser	Schilling & Overall, 2008
ATP synthase subunit alpha	P0ABB0	1-513	peptide-Glu429+Leu-peptide	N	MS	Lys	Val	Thr	Glu	Leu	Leu	Lys	Gln	Timmer et al., 2009
ATP synthase subunit alpha, mitochondrial	P25705	44-553	peptide-Glu127+Gly-peptide	N	MS	Leu	Ile	Lys	Glu	Gly	Asp	Ile	Val	Schilling & Overall, 2008
ATP synthase subunit alpha, mitochondrial	P25705		peptide-Glu70+Thr-peptide	N	MS	Asp	Leu	Glu	Glu	Thr	Gly	Arg	Val	Vidmar et al., 2017
ATP synthase subunit alpha, mitochondrial	P25705		peptide-Glu56+Glu-peptide	N	MS	Ser	Ile	Leu	Glu	Glu	Arg	Ile	Leu	Vidmar et al., 2017
ATP synthase subunit beta, mitochondrial	P06576		peptide-Glu105+Ser-peptide	N	MS	His	Leu	Gly	Glu	Ser	Thr	Val	Arg	Vidmar et al., 2017
ATP synthase subunit beta, mitochondrial	P06576		peptide-Asp127+Ser-peptide	N	MS	Lys	Val	Leu	Asp	Ser	Gly	Ala	Pro	Vidmar et al., 2017
ATP synthase subunit beta, mitochondrial	P06576		peptide-Glu515+Ala-peptide	N	MS	Pro	Ile	Glu	Glu	Ala	Val	Ala	Lys	Vidmar et al., 2017
ATP synthase subunit beta, mitochondrial	P06576		peptide-Glu486+Thr-peptide	N	MS	Pro	Leu	Lys	Glu	Thr	Ile	Lys	Gly	Vidmar et al., 2017
ATP synthase subunit beta, mitochondrial precursor	P06576	387-406	AIAE+LGIYPAVDPLDSTSR	N	MS	Ala	Ile	Ala	Glu	Leu	Gly	Ile	Tyr	Schilling & Overall, 2008
ATP synthase subunit beta, mitochondrial precursor	P06576	462-480	FLSQPFQVAE+VFTGHMGK	N	MS	Gln	Val	Ala	Glu	Val	Phe	Thr	Gly	Schilling & Overall, 2008
ATP synthase subunit beta, mitochondrial precursor	P06576	48-529	peptide-Glu154+Arg-peptide	N	MS	Pro	Ile	Asp	Glu	Arg	Gly	Pro	Ile	Schilling & Overall, 2008
ATP synthase subunit delta, mitochondrial	P30049		peptide-Asp123+Met-peptide	N	MS	Val	Thr	Leu	Asp	Met	Leu	Asp	Leu	Vidmar et al., 2017
ATP synthase subunit delta, mitochondrial	P30049		peptide-Glu140+Leu-peptide	N	MS	Ala	Gln	Ala	Glu	Leu	Val	Gly	Thr	Vidmar et al., 2017
ATP-binding cassette sub-family E member 1	P61221	96-116	LPIPRPGE+VLGLVGTNGIGK	N	MS	Arg	Pro	Gly	Glu	Val	Leu	Gly	Leu	Schilling & Overall, 2008
ATP-binding cassette sub-family E member 1	P61221	1-599	peptide-Glu193+Thr-peptide	N	MS	Arg	Lys	Asp	Glu	Thr	Lys	Thr	Gln	Schilling & Overall, 2008
ATP-binding cassette sub-family F member 1	Q8NE71		peptide-Glu181+Lys-peptide	N	MS	Gly	Lys	Glu	Glu	Lys	Ser	Lys	Gly	Vidmar et al., 2017
ATP-binding cassette sub-family F member 1	Q8NE71		peptide-Glu157+Lys-peptide	N	MS	Ala	Lys	Pro	Glu	Lys	Asn	Arg	Ile	Vidmar et al., 2017
ATP-citrate synthase	P53396	244-259	EAYPE+EAYIADLDAK	N	MS	Ala	Tyr	Pro	Glu	Glu	Ala	Tyr	Ile	Schilling & Overall, 2008
ATP-citrate synthase	P53396	676-703	peptide-Glu683+Gly-peptide	N	MS	Gly	Val	Tyr	Glu	Gly	Val	Ala	Ile	Schilling & Overall, 2008
ATP-citrate synthase	P53396	1-1101	peptide-Glu118+Phe-peptide	N	MS	Gln	Ala	Glu	Glu	Phe	Tyr	Val	Cys	Schilling & Overall, 2008
ATP-citrate synthase	P53396		peptide-Glu669+Leu-peptide	N	MS	Met	Ser	Asn	Glu	Leu	Asn	Asn	Ile	Vidmar et al., 2017
ATP-citrate synthase	P53396		peptide-Glu755+Val-peptide	N	MS	Phe	Ser	Ser	Glu	Val	Gln	Phe	Gly	Vidmar et al., 2017
ATP-citrate synthase	P53396		peptide-Glu830+Leu-peptide	N	MS	Trp	Ala	Arg	Glu	Leu	Gly	Leu	Ile	Vidmar et al., 2017
ATP-citrate synthase	P53396		peptide-Glu781+Ala-peptide	N	MS	Ala	Leu	Lys	Glu	Ala	Gly	Val	Phe	Vidmar et al., 2017
ATP-citrate synthase	P53396		peptide-Glu770+Thr-peptide	N	MS	Gln	Ala	Ser	Glu	Thr	Ala	Val	Ala	Vidmar et al., 2017
ATP-dependent Clp protease ATP-binding subunit clpX	P0A6H1	2-424	peptide-Glu349+Phe-peptide	N	MS	Val	Asp	Leu	Glu	Phe	Arg	Asp	Glu	Timmer et al., 2009
ATP-dependent DNA helicase 2 subunit 2	P13010	443-465	peptide-Glu448+Ala-peptide	N	MS	Ala	Pro	Thr	Glu	Ala	Gln	Leu	Asn	Schilling & Overall, 2008
ATP-dependent DNA helicase 2 subunit 2	P13010	568-599	peptide-Glu583+Gly-peptide	N	MS	Ser	Leu	Ala	Glu	Gly	Ser	Val	Thr	Schilling & Overall, 2008
ATP-dependent DNA helicase 2 subunit 2	P13010	545-565	DQVTAQE+IFQDNHEDGPTAK	N	MS	Thr	Ala	Gln	Glu	Ile	Phe	Gln	Asp	Schilling & Overall, 2008
ATP-dependent DNA helicase 2 subunit 2	P13010	2-732	peptide-Glu541+Ala-peptide	N	MS	Pro	Leu	Ile	Glu	Ala	Lys	Lys	Lys	Schilling & Overall, 2008
ATP-dependent RNA helicase A	Q08211		peptide-Glu267+Gly-peptide	N	MS	Lys	Lys	Lys	Glu	Gly	Glu	Thr	Val	Vidmar et al., 2017
ATP-dependent RNA helicase DDX1	Q92499		peptide-Glu721+Ala-peptide	N	MS	Leu	Glu	Lys	Glu	Ala	Gln	Thr	Ser	Vidmar et al., 2017
ATP-dependent RNA helicase DDX19A	Q9NUU7	1-478	peptide-Glu77+Val-peptide	N	MS	Asn	Gln	Val	Glu	Val	Leu	Gln	Arg	Schilling & Overall, 2008
ATP-dependent RNA helicase DDX39	O00148	57-89	peptide-Glu73+Cys-peptide	N	MS	Val	Gln	His	Glu	Cys	Ile	Pro	Gln	Schilling & Overall, 2008
ATP-dependent RNA helicase DDX39A	O00148		peptide-Glu54+Leu-peptide	N	MS	Leu	Lys	Pro	Glu	Leu	Leu	Arg	Ala	Vidmar et al., 2017
ATPase ASNA1	O43681		peptide-Glu264+Leu-peptide	N	MS	Leu	Ile	Gln	Glu	Leu	Ala	Lys	Cys	Vidmar et al., 2017
ATPase inhibitor, mitochondrial	Q9UII2		peptide-Glu91+Ile-peptide	N	MS	Leu	Gln	Lys	Glu	Ile	Glu	Arg	His	Vidmar et al., 2017
ATPase inhibitor, mitochondrial	Q9UII2		peptide-Phe25+Gly-peptide	N	MS	Ala	Arg	Gly	Phe	Gly	Ser	Asp	Gln	Vidmar et al., 2017
ATPase inhibitor, mitochondrial	Q9UII2		peptide-Glu56+Arg-peptide	N	MS	Ala	Glu	Glu	Glu	Arg	Tyr	Phe	Arg	Vidmar et al., 2017
autonomous glycyl radical cofactor	P68066	1-127	peptide-Glu68+Gly-peptide	N	MS	Val	Arg	Val	Glu	Gly	Gly	Gln	His	Timmer et al., 2009
autonomous glycyl radical cofactor	P68066	1-127	peptide-Glu42+Val-peptide	N	MS	Ala	Glu	Asp	Glu	Val	Val	Ala	Val	Timmer et al., 2009
B-cell receptor-associated protein 29	Q9UHQ4		peptide-Glu190+Leu-peptide	N	MS	Leu	Lys	Thr	Glu	Leu	Arg	Lys	Thr	Vidmar et al., 2017
B-cell receptor-associated protein 29	Q9UHQ4		peptide-Glu225+His-peptide	N	MS	Leu	Leu	Lys	Glu	His	Ser	Glu	Leu	Vidmar et al., 2017
B-cell receptor-associated protein 31	P51572		peptide-Glu178+Glu-peptide	N	MS	Val	Lys	Leu	Glu	Glu	Glu	Asn	Arg	Vidmar et al., 2017
B-cell receptor-associated protein 31	P51572		peptide-Glu153+Asn-peptide	N	MS	Tyr	Met	Glu	Glu	Asn	Asp	Gln	Leu	Vidmar et al., 2017
B-cell receptor-associated protein 31	P51572		peptide-Glu194+Leu-peptide	N	MS	Leu	Lys	Asp	Glu	Leu	Ala	Ser	Thr	Vidmar et al., 2017
B-cell receptor-associated protein 31	P51572		peptide-Glu180+Asn-peptide	N	MS	Leu	Glu	Glu	Glu	Asn	Arg	Ser	Leu	Vidmar et al., 2017
B-cell receptor-associated protein 31	P51572		peptide-Glu206+Asn-peptide	N	MS	Glu	Lys	Ala	Glu	Asn	Gln	Val	Leu	Vidmar et al., 2017
B-cell receptor-associated protein 31	P51572		peptide-Glu229+His-peptide	N	MS	Leu	Leu	Glu	Glu	His	Ala	Lys	Leu	Vidmar et al., 2017
BAG family molecular chaperone regulator 2	O95816		peptide-Glu12+Gly-peptide	N	MS	Lys	Ala	Asn	Glu	Gly	Arg	Phe	Cys	Vidmar et al., 2017
BAG family molecular chaperone regulator 2	O95816		peptide-Glu58+Met-peptide	N	MS	Ile	Leu	Leu	Glu	Met	Ile	His	Ser	Vidmar et al., 2017
BAG family molecular chaperone regulator 2	O95816		peptide-Glu192+His-peptide	N	MS	Lys	Leu	Leu	Glu	His	Ser	Lys	Gly	Vidmar et al., 2017
BAG family molecular chaperone regulator 3	O95817	1-575	peptide-Glu239+Tyr-peptide	N	MS	Gln	Gln	Gly	Glu	Tyr	Gln	Thr	His	Schilling & Overall, 2008
BAG family molecular chaperone regulator 3	O95817		peptide-Glu213+Gln-peptide	N	MS	Val	Ile	His	Glu	Gln	Asn	Val	Thr	Vidmar et al., 2017
BAG family molecular chaperone regulator 3	O95817		peptide-Glu322+Ser-peptide	N	MS	Asn	Lys	Pro	Glu	Ser	Lys	Pro	Gly	Vidmar et al., 2017
BAG family molecular chaperone regulator 3	O95817		peptide-Glu526+Met-peptide	N	MS	Ala	Ile	Met	Glu	Met	Gly	Ala	Val	Vidmar et al., 2017
BAG family molecular chaperone regulator 3	O95817		peptide-Glu104+Asn-peptide	N	MS	Glu	Gly	Ala	Glu	Asn	Arg	Gln	Val	Vidmar et al., 2017
baltergin ({Bothrops alternatus})	P0C6R9	1-196	peptide-Glu68+Cys-peptide	N		Ser	Met	Ser	Glu	Cys	Asp	Pro	Ala	Souza et al., 2000
baltergin ({Bothrops alternatus})	P0C6R9	1-196	peptide-Asp96+Asn-peptide	N		Pro	Cys	Leu	Asp	Asn	Tyr	Gly	Tyr	Souza et al., 2000
baltergin ({Bothrops alternatus})	P0C6R9	1-196	peptide-Asp166+Asn-peptide	N		Tyr	Cys	Lys	Asp	Asn	Ser	Pro	Lys	Souza et al., 2000
baltergin ({Bothrops alternatus})	P0C6R9	1-196	peptide-Glu184+His-peptide	N		Asn	Asp	Asp	Glu	His	Lys	Gly	Asn	Souza et al., 2000
Band 4.1-like protein 2	O43491		peptide-Glu931+Ser-peptide	N	MS	Ile	Thr	Ser	Glu	Ser	Val	Ser	Thr	Vidmar et al., 2017
Band 4.1-like protein 2	O43491		peptide-Ala129+Glu-peptide	N	MS	Lys	Gly	Asp	Ala	Glu	Glu	Met	Ala	Vidmar et al., 2017
Band 4.1-like protein 2	O43491		peptide-Glu955+Lys-peptide	N	MS	Thr	Arg	Ile	Glu	Lys	Arg	Ile	Val	Vidmar et al., 2017
Band 4.1-like protein 2	O43491		peptide-Glu888+Ile-peptide	N	MS	Gln	Arg	Thr	Glu	Ile	Ser	Thr	Lys	Vidmar et al., 2017
Band 4.1-like protein 2	O43491		peptide-Glu697+Val-peptide	N	MS	Lys	Arg	Ala	Glu	Val	Gly	Lys	Asp	Vidmar et al., 2017
Band 4.1-like protein 2	O43491		peptide-Glu876+Met-peptide	N	MS	Val	Lys	Thr	Glu	Met	Val	Thr	Ile	Vidmar et al., 2017
Band 4.1-like protein 2	O43491		peptide-Glu573+Ile-peptide	N	MS	Ala	Ala	Gly	Glu	Ile	Ser	Ala	Tyr	Vidmar et al., 2017
Basal cell adhesion molecule	P50895		peptide-Glu355+Leu-peptide	N	MS	Lys	Thr	Leu	Glu	Leu	Arg	Val	Ala	Vidmar et al., 2017
Basigin	P35613		peptide-Glu200+Tyr-peptide	N	MS	Gln	Trp	Gly	Glu	Tyr	Ser	Cys	Val	Vidmar et al., 2017
Basigin	P35613		peptide-Glu165+Val-peptide	N	MS	Ser	Ala	Thr	Glu	Val	Thr	Gly	His	Vidmar et al., 2017
Basigin	P35613		peptide-Glu189+Phe-peptide	N	MS	Gln	Lys	Thr	Glu	Phe	Lys	Val	Asp	Vidmar et al., 2017
Basigin	P35613		peptide-Glu180+Asp-peptide	N	MS	Val	Leu	Lys	Glu	Asp	Ala	Leu	Pro	Vidmar et al., 2017
Basigin	P35613		peptide-Glu271+Ser-peptide	N	MS	Asn	Gly	Ser	Glu	Ser	Arg	Phe	Phe	Vidmar et al., 2017
BBF2H7/FUS protein	Q70T18	1-157	peptide-Glu91+Phe-peptide	N	MS	Asp	Gly	Lys	Glu	Phe	Ser	Gly	Asn	Schilling & Overall, 2008
BBF2H7/FUS protein	Q70T18	1-157	peptide-Asp75+Asp-peptide	N	MS	Val	Ser	Phe	Asp	Asp	Pro	Pro	Ser	Schilling & Overall, 2008
Bcl-2-associated transcription factor 1	Q9NYF8		peptide-Glu329+Thr-peptide	N	MS	Gly	Asp	Gln	Glu	Thr	Ala	Lys	Thr	Vidmar et al., 2017
BET1 homolog	O15155	1-118	peptide-Glu52+Ile-peptide	N	MS	Leu	Ser	Ile	Glu	Ile	Gly	His	Glu	Schilling & Overall, 2008
Beta-actin-like protein 2	Q562R1	242-255	LPD+GQVITIGNER	N	MS	-	Leu	Pro	Asp	Gly	Gln	Val	Ile	Schilling & Overall, 2008
beta-enolase	P13929	372-394	peptide-Glu377+Asp-peptide	N	MS	Gly	Glu	Thr	Glu	Asp	Thr	Phe	Ile	Schilling & Overall, 2008
beta-enolase	P13929	2-434	peptide-Glu402+Arg-peptide	N	MS	Cys	Arg	Ser	Glu	Arg	Leu	Ala	Lys	Schilling & Overall, 2008
beta-enolase	P13929	2-434	peptide-Glu167+Phe-peptide	N	MS	Ala	Met	Gln	Glu	Phe	Met	Ile	Leu	Schilling & Overall, 2008
beta-mammal toxin Css2	P08900	36-63	peptide-Glu53+Gln-peptide	N		His	Leu	Tyr	Glu	Gln	Ala	Val	Val	Martin et al., 1987
bifunctional aminoacyl-tRNA synthetase	P07814	1020-1034	EE+NLADWYSQVITK	N	MS	-	-	Glu	Glu	Asn	Leu	Ala	Asp	Schilling & Overall, 2008
bifunctional aminoacyl-tRNA synthetase	P07814	1-1512	peptide-Glu179+Lys-peptide	N	MS	Val	Ala	Pro	Glu	Lys	Lys	Gln	Asp	Schilling & Overall, 2008
Bifunctional glutamate/proline--tRNA ligase	P07814		peptide-Glu1111+Leu-peptide	N	MS	Gly	Lys	Thr	Glu	Leu	Ala	Glu	Pro	Vidmar et al., 2017
bifunctional purine biosynthesis protein PURH	P31939	1-592	peptide-Glu19+Phe-peptide	N	MS	Gly	Leu	Val	Glu	Phe	Ala	Arg	Asn	Schilling & Overall, 2008
Bifunctional purine biosynthesis protein PURH	P31939		peptide-Glu577+Leu-peptide	N	MS	Ala	Cys	Asp	Glu	Leu	Gly	Ile	Ile	Vidmar et al., 2017
biosynthetic arginine decarboxylase	P21170	1-658	peptide-Glu24+Val-peptide	N	MS	Ser	Met	Gln	Glu	Val	Ala	Met	Ser	Timmer et al., 2009
brain acid soluble protein 1	P80723	102-121	APEQE+QAAPGPAAGGEAPK	N	MS	Pro	Glu	Gln	Glu	Gln	Ala	Ala	Pro	Schilling & Overall, 2008
BRO1 domain-containing protein BROX	Q5VW32		peptide-Asp374+Leu-peptide	N	MS	Ala	Ala	Phe	Asp	Leu	Thr	Lys	Arg	Vidmar et al., 2017
BXDC2 protein	A0JLQ5	295-326	peptide-Glu317+Ile-peptide	N	MS	Lys	Pro	Ile	Glu	Ile	Gln	Trp	Val	Schilling & Overall, 2008
C-1-tetrahydrofolate synthase, cytoplasmic	P11586	175-198	peptide-Asp183+Leu-peptide	N	MS	Pro	Met	His	Asp	Leu	Leu	Leu	Trp	Schilling & Overall, 2008
C-Jun-amino-terminal kinase-interacting protein 4	O60271		peptide-Glu132+Leu-peptide	N	MS	Arg	Gln	Leu	Glu	Leu	Lys	Ala	Lys	Vidmar et al., 2017
C-Jun-amino-terminal kinase-interacting protein 4	O60271		peptide-Glu371+Asn-peptide	N	MS	Lys	Gly	Ile	Glu	Asn	Lys	Ala	Phe	Vidmar et al., 2017
C-Jun-amino-terminal kinase-interacting protein 4	O60271		peptide-Glu59+Asn-peptide	N	MS	Ala	Val	Leu	Glu	Asn	Leu	Asp	Ser	Vidmar et al., 2017
C-Jun-amino-terminal kinase-interacting protein 4	O60271		peptide-Glu299+Gly-peptide	N	MS	Glu	Glu	Asn	Glu	Gly	Phe	Val	Lys	Vidmar et al., 2017
C-terminal binding protein 1 isoform 2	Q13363-2	1-429	peptide-Glu30+Met-peptide	N	MS	Cys	Thr	Val	Glu	Met	Pro	Ile	Leu	Schilling & Overall, 2008
C-terminal-binding protein 1	Q13363	1-440	peptide-Glu41+Met-peptide	N	MS	Cys	Thr	Val	Glu	Met	Pro	Ile	Leu	Schilling & Overall, 2008
CAD protein	P27708		peptide-Glu1108+Arg-peptide	N	MS	Gly	Asp	Leu	Glu	Arg	Phe	Leu	Ser	Vidmar et al., 2017
CAD protein	P27708		peptide-Glu573+Leu-peptide	N	MS	Asn	Arg	Glu	Glu	Leu	Ser	Ala	Leu	Vidmar et al., 2017
CAD protein	P27708		peptide-Glu1637+Val-peptide	N	MS	Val	Thr	Cys	Glu	Val	Ala	Pro	His	Vidmar et al., 2017
CAD protein	P27708		peptide-Glu199+Val-peptide	N	MS	Arg	Gly	Ala	Glu	Val	Thr	Val	Val	Vidmar et al., 2017
CAD protein	P27708		peptide-Glu359+Ala-peptide	N	MS	Thr	Val	Lys	Glu	Ala	Thr	Ala	Gly	Vidmar et al., 2017
CAD protein	P27708		peptide-Glu524+Ile-peptide	N	MS	Arg	Met	Ala	Glu	Ile	Gly	Glu	His	Vidmar et al., 2017
Calcineurin subunit B type 1	P63098		peptide-Glu19+Ile-peptide	N	MS	Asp	Ala	Asp	Glu	Ile	Lys	Arg	Leu	Vidmar et al., 2017
Calcium-binding protein 39	Q9Y376		peptide-Glu42+Val-peptide	N	MS	Ala	Thr	Glu	Glu	Val	Ser	Lys	Asn	Vidmar et al., 2017
Calcium-binding protein 39	Q9Y376		peptide-Glu27+Lys-peptide	N	MS	Ala	Val	Leu	Glu	Lys	Gln	Asp	Ile	Vidmar et al., 2017
calcium-regulated heat stable protein 1	Q9Y2V2	120-136	LQAVE+VVITHLAPGTK	N	MS	Gln	Ala	Val	Glu	Val	Val	Ile	Thr	Schilling & Overall, 2008
calcium-regulated heat stable protein 1	Q9Y2V2	1-147	peptide-Glu28+Arg-peptide	N	MS	Arg	Ser	Arg	Glu	Arg	Ser	Pro	Ser	Schilling & Overall, 2008
Calcyclin-binding protein	Q9HB71		peptide-Glu18+Lys-peptide	N	MS	Val	Leu	Leu	Glu	Lys	Ala	Thr	Arg	Vidmar et al., 2017
Calcyclin-binding protein	Q9HB71		peptide-Glu159+Asn-peptide	N	MS	Lys	Lys	Val	Glu	Asn	Thr	Arg	Trp	Vidmar et al., 2017
Calcyclin-binding protein	Q9HB71		peptide-Glu219+Lys-peptide	N	MS	Glu	Ser	Arg	Glu	Lys	Gln	Ala	Lys	Vidmar et al., 2017
Calcyclin-binding protein	Q9HB71		peptide-Glu37+Thr-peptide	N	MS	Ser	Lys	Ile	Glu	Thr	Glu	Ile	Lys	Vidmar et al., 2017
Calcyclin-binding protein	Q9HB71		peptide-Glu216+Ser-peptide	N	MS	Ala	Trp	Val	Glu	Ser	Arg	Glu	Lys	Vidmar et al., 2017
caldesmon	Q9UD91	1-793	peptide-Glu680+Gln-peptide	N	MS	Ser	Arg	Leu	Glu	Gln	Tyr	Thr	Ser	Schilling & Overall, 2008
Caldesmon	Q05682		peptide-Glu748+Trp-peptide	N	MS	Arg	Ile	Asn	Glu	Trp	Leu	Thr	Lys	Vidmar et al., 2017
Caldesmon	Q05682		peptide-Glu507+Asn-peptide	N	MS	Lys	His	Thr	Glu	Asn	Thr	Phe	Ser	Vidmar et al., 2017
Caldesmon	Q05682		peptide-Glu120+Phe-peptide	N	MS	Arg	Gln	Lys	Glu	Phe	Asp	Pro	Thr	Vidmar et al., 2017
Caldesmon	Q05682		peptide-Glu477+Val-peptide	N	MS	Pro	Lys	Glu	Glu	Val	Lys	Ser	Phe	Vidmar et al., 2017
Caldesmon	Q05682		peptide-Glu497+Phe-peptide	N	MS	Gln	Asn	Gly	Glu	Phe	Met	Thr	His	Vidmar et al., 2017
Caldesmon	Q05682		peptide-Glu734+Thr-peptide	N	MS	Pro	Asn	Lys	Glu	Thr	Ala	Gly	Leu	Vidmar et al., 2017
Caldesmon	Q05682		peptide-Glu550+Phe-peptide	N	MS	Glu	Ser	Glu	Glu	Phe	Glu	Lys	Leu	Vidmar et al., 2017
Caldesmon	Q05682		peptide-Glu78+Ala-peptide	N	MS	Pro	Asp	Glu	Glu	Ala	Lys	Thr	Thr	Vidmar et al., 2017
calmodulin	P62158	2-149	peptide-Glu88+Ala-peptide	N		Glu	Ile	Arg	Glu	Ala	Phe	Arg	Val	Pedigo & Shea, 1995
calmodulin	P62158	2-149	peptide-Glu32+Leu-peptide	N		Thr	Thr	Lys	Glu	Leu	Gly	Thr	Val	Pedigo & Shea, 1995
calnexin	Q16094	1-42	peptide-Glu26+Val-peptide	N	MS	Val	Ile	Glu	Glu	Val	Glu	Asp	Ser	Schilling & Overall, 2008
calnexin	Q16094	46-62	APVPTGE+VYFADSFDR	N	MS	Pro	Thr	Gly	Glu	Val	Tyr	Phe	Ala	Schilling & Overall, 2008
Calnexin	P27824		peptide-Glu216+Lys-peptide	N	MS	Ile	Tyr	Glu	Glu	Lys	His	Ala	Lys	Vidmar et al., 2017
Calnexin	P27824		peptide-Ala20+His-peptide	N	MS	Ile	Val	Glu	Ala	His	Asp	Gly	His	Vidmar et al., 2017
Calnexin	P27824		peptide-Glu351+Ala-peptide	N	MS	Gly	Glu	Trp	Glu	Ala	Pro	Gln	Ile	Vidmar et al., 2017
calnexin precursor	P27824	359-380	peptide-Glu361+Ser-peptide	N	MS	-	-	Cys	Glu	Ser	Ala	Pro	Gly	Schilling & Overall, 2008
calnexin precursor	P27824	4-57	peptide-Glu41+Val-peptide	N	MS	Val	Ile	Glu	Glu	Val	Glu	Asp	Ser	Schilling & Overall, 2008
calnexin precursor	P27824	61-77	APVPTGE+VYFADSFDR	N	MS	Pro	Thr	Gly	Glu	Val	Tyr	Phe	Ala	Schilling & Overall, 2008
Calpain-2 catalytic subunit	P17655		peptide-Glu41+Ala-peptide	N	MS	Glu	Cys	Leu	Glu	Ala	Gly	Thr	Leu	Vidmar et al., 2017
Calpain-2 catalytic subunit	P17655		peptide-Glu33+Ala-peptide	N	MS	Gln	Asp	Tyr	Glu	Ala	Leu	Arg	Asn	Vidmar et al., 2017
Calpain-2 catalytic subunit	P17655		peptide-Glu613+Ile-peptide	N	MS	Ile	Tyr	Arg	Glu	Ile	Asp	Val	Asp	Vidmar et al., 2017
Calpastatin	P20810	102-127	peptide-Glu173+Ser-peptide	N	MS	Ala	Gly	Gly	Glu	Ser	Val	Ala	Gly	Schilling & Overall, 2008
Calpastatin	P20810		peptide-Glu213+Gly-peptide	N	MS	Ala	Lys	Lys	Glu	Gly	Ile	Thr	Gly	Vidmar et al., 2017
Calpastatin	P20810		peptide-Glu371+Leu-peptide	N	MS	Leu	Ile	Asp	Glu	Leu	Ser	Glu	Asp	Vidmar et al., 2017
Calpastatin	P20810		peptide-Glu639+Asp-peptide	N	MS	Lys	Lys	Ser	Glu	Asp	Ser	Lys	Lys	Vidmar et al., 2017
Calpastatin	P20810		peptide-Glu54+Gly-peptide	N	MS	Lys	Ser	Gln	Glu	Gly	Lys	Pro	Lys	Vidmar et al., 2017
Calpastatin	P20810		peptide-Glu338+Tyr-peptide	N	MS	Ile	Pro	Ser	Glu	Tyr	Arg	Leu	Lys	Vidmar et al., 2017
Calpastatin	P20810		peptide-Glu485+Val-peptide	N	MS	Arg	Leu	Glu	Glu	Val	Lys	Asp	Lys	Vidmar et al., 2017
Calpastatin	P20810		peptide-Glu460+Lys-peptide	N	MS	Lys	Val	Lys	Glu	Lys	Ala	Lys	Glu	Vidmar et al., 2017
Calpastatin	P20810		peptide-Glu405+Ala-peptide	N	MS	Pro	Val	Ser	Glu	Ala	Val	Cys	Arg	Vidmar et al., 2017
Calpastatin	P20810		peptide-Glu394+Ser-peptide	N	MS	Lys	Thr	Glu	Glu	Ser	Lys	Ala	Ala	Vidmar et al., 2017
Calpastatin	P20810		peptide-Glu292+Ala-peptide	N	MS	Gln	Ala	Leu	Glu	Ala	Leu	Ser	Ala	Vidmar et al., 2017
Calpastatin	P20810		peptide-Glu282+Lys-peptide	N	MS	Arg	Lys	Val	Glu	Lys	Asp	Thr	Met	Vidmar et al., 2017
Calpastatin	P20810		peptide-Glu517+Asp-peptide	N	MS	Ala	Leu	Ser	Glu	Asp	Phe	Ser	Gly	Vidmar et al., 2017
Calpastatin	P20810		peptide-Glu36+Lys-peptide	N	MS	Thr	Glu	Pro	Glu	Lys	Lys	Ser	Gln	Vidmar et al., 2017
Calpastatin	P20810		peptide-Glu306+Leu-peptide	N	MS	Ala	Glu	Pro	Glu	Leu	Asp	Leu	Arg	Vidmar et al., 2017
Calpastatin	P20810		peptide-Glu380+Cys-peptide	N	MS	Asp	Arg	Ser	Glu	Cys	Lys	Glu	Lys	Vidmar et al., 2017
calpastatin isoform 4	P20810-4	61-86	peptide-Glu71+Ser-peptide	N	MS	Ala	Gly	Gly	Glu	Ser	Val	Ala	Gly	Schilling & Overall, 2008
calpastatin isoform 4	P20810-4	1-667	peptide-Glu394+Ala-peptide	N	MS	Asp	Ala	Val	Glu	Ala	Leu	Ala	Asp	Schilling & Overall, 2008
calpastatin isoform a variant	Q59HE3	191-216	peptide-Glu201+Ser-peptide	N	MS	Ala	Gly	Gly	Glu	Ser	Val	Ala	Gly	Schilling & Overall, 2008
calpastatin isoform a variant	Q59HE3	1-784	peptide-Glu511+Ala-peptide	N	MS	Asp	Ala	Val	Glu	Ala	Leu	Ala	Asp	Schilling & Overall, 2008
Calponin-3	Q15417		peptide-Glu15+Val-peptide	N	MS	Leu	Ser	Ala	Glu	Val	Lys	Asn	Lys	Vidmar et al., 2017
Calponin-3	Q15417		peptide-Glu60+Leu-peptide	N	MS	Ile	Leu	Cys	Glu	Leu	Ile	Asn	Lys	Vidmar et al., 2017
Calreticulin	P27797		peptide-Glu256+Met-peptide	N	MS	Trp	Asp	Glu	Glu	Met	Asp	Gly	Glu	Vidmar et al., 2017
Calreticulin	P27797		peptide-Glu270+Tyr-peptide	N	MS	Gln	Asn	Pro	Glu	Tyr	Lys	Gly	Glu	Vidmar et al., 2017
Calreticulin	P27797		peptide-Glu221+Arg-peptide	N	MS	Asp	Trp	Asp	Glu	Arg	Ala	Lys	Ile	Vidmar et al., 2017
Calreticulin	P27797		peptide-Asp317+Leu-peptide	N	MS	Leu	Gly	Leu	Asp	Leu	Trp	Gln	Val	Vidmar et al., 2017
Calreticulin	P27797		peptide-Glu341+Phe-peptide	N	MS	Tyr	Ala	Glu	Glu	Phe	Gly	Asn	Glu	Vidmar et al., 2017
Calreticulin	P27797		peptide-Glu167+Phe-peptide	N	MS	Lys	Asp	Asp	Glu	Phe	Thr	His	Leu	Vidmar et al., 2017
Calreticulin	P27797		peptide-Glu25+Gln-peptide	N	MS	Tyr	Phe	Lys	Glu	Gln	Phe	Leu	Asp	Vidmar et al., 2017
Calreticulin	P27797		peptide-Glu274+Trp-peptide	N	MS	Tyr	Lys	Gly	Glu	Trp	Lys	Pro	Arg	Vidmar et al., 2017
Calreticulin	P27797		peptide-Glu183+Val-peptide	N	MS	Asn	Thr	Tyr	Glu	Val	Lys	Ile	Asp	Vidmar et al., 2017
calreticulin precursor	P27797	185-207	peptide-Glu192+Ser-peptide	N	MS	Ser	Gln	Val	Glu	Ser	Gly	Ser	Leu	Schilling & Overall, 2008
calreticulin precursor	P27797	111-142	peptide-Glu127+Tyr-peptide	N	MS	Gly	Asp	Ser	Glu	Tyr	Asn	Ile	Met	Schilling & Overall, 2008
Calretinin	P22676		peptide-Glu175+Met-peptide	N	MS	Gly	Leu	Ser	Glu	Met	Ser	Arg	Leu	Vidmar et al., 2017
CALU protein	Q6IAW5	1-315	peptide-Glu92+Leu-peptide	N	MS	Thr	Val	Asp	Glu	Leu	Lys	Asp	Trp	Schilling & Overall, 2008
Calumenin	O43852		peptide-Glu289+Ile-peptide	N	MS	Thr	Lys	Glu	Glu	Ile	Val	Asp	Lys	Vidmar et al., 2017
Calumenin	O43852		peptide-Glu253+Thr-peptide	N	MS	Asp	Lys	Glu	Glu	Thr	Lys	Asp	Trp	Vidmar et al., 2017
Calumenin	O43852		peptide-Glu239+Phe-peptide	N	MS	Gln	Phe	Val	Glu	Phe	Arg	Asp	Lys	Vidmar et al., 2017
Calumenin	O43852		peptide-Glu71+Arg-peptide	N	MS	Glu	Ser	Lys	Glu	Arg	Leu	Gly	Lys	Vidmar et al., 2017
Calumenin	O43852		peptide-Glu57+Ala-peptide	N	MS	Gly	Ala	Glu	Glu	Ala	Lys	Thr	Phe	Vidmar et al., 2017
Calumenin	O43852		peptide-Glu157+Arg-peptide	N	MS	Val	Arg	Asp	Glu	Arg	Arg	Phe	Lys	Vidmar et al., 2017
Calumenin	O43852		peptide-Glu276+Ser-peptide	N	MS	Leu	Val	Tyr	Glu	Ser	Asp	Gln	Asn	Vidmar et al., 2017
cAMP-dependent protein kinase type I-alpha regulatory subunit	P00514	12-49	peptide-Glu43+Arg-peptide	N		Ala	Arg	Pro	Glu	Arg	Pro	Met	Ala	Titani et al., 1984
cAMP-dependent protein kinase type I-alpha regulatory subunit	P00514	115-210	peptide-Asp150+Ala-peptide	N		Asp	Ile	Phe	Asp	Ala	Met	Phe	Pro	Titani et al., 1984
cAMP-dependent protein kinase type I-alpha regulatory subunit	P00514	182-235	peptide-Asp228+Ser-peptide	N		Ile	Asp	Arg	Asp	Ser	Tyr	Arg	Arg	Titani et al., 1984
cAMP-dependent protein kinase type I-alpha regulatory subunit	P00514	245-330	peptide-Glu296+Gly-peptide	N		Ile	Ile	Leu	Glu	Gly	Ser	Ala	Ala	Titani et al., 1984
cAMP-dependent protein kinase type I-alpha regulatory subunit	P00514	331-380	peptide-Glu355+Arg-peptide	N		Pro	Arg	Phe	Glu	Arg	Val	Leu	Gly	Titani et al., 1984
cAMP-dependent protein kinase type I-alpha regulatory subunit	P00514	245-330	peptide-Glu307+Asn-peptide	N		Arg	Arg	Ser	Glu	Asn	Glu	Glu	Phe	Titani et al., 1984
cAMP-dependent protein kinase type I-alpha regulatory subunit	P00514	245-330	peptide-Glu313+Val-peptide	N		Glu	Phe	Val	Glu	Val	Gly	Arg	Leu	Titani et al., 1984
cAMP-dependent protein kinase type I-alpha regulatory subunit	P00514		peptide-Glu169+Gly-peptide	N		Gln	Gly	Asp	Glu	Gly	Asp	Asn	Phe	Titani et al., 1984
cAMP-dependent protein kinase type I-alpha regulatory subunit	P00514		peptide-Asp182+Val-peptide	N		Gly	Glu	Met	Asp	Val	Tyr	Val	Asn	Titani et al., 1984
cAMP-dependent protein kinase type II-alpha regulatory subunit	P13861		peptide-Glu20+Val-peptide	N	MS	Tyr	Thr	Val	Glu	Val	Leu	Arg	Gln	Vidmar et al., 2017
CAP-Gly domain-containing linker protein 1	P30622		peptide-Glu1159+Thr-peptide	N	MS	Lys	Glu	Ile	Glu	Thr	Leu	Lys	Gln	Vidmar et al., 2017
CAP-Gly domain-containing linker protein 1	P30622		peptide-Glu1192+Val-peptide	N	MS	Ser	Arg	Asp	Glu	Val	Thr	Ser	His	Vidmar et al., 2017
CAP-Gly domain-containing linker protein 1	P30622		peptide-Glu377+Val-peptide	N	MS	Glu	Arg	Ala	Glu	Val	Ala	Lys	Ala	Vidmar et al., 2017
CAP-Gly domain-containing linker protein 1	P30622		peptide-Glu1042+Ile-peptide	N	MS	Lys	His	Glu	Glu	Ile	Leu	Gln	Asn	Vidmar et al., 2017
CAP-Gly domain-containing linker protein 1	P30622		peptide-Glu1110+Asp-peptide	N	MS	Ala	Ser	Leu	Glu	Asp	Thr	Lys	Gln	Vidmar et al., 2017
Caprin-1	Q14444		peptide-Glu80+Arg-peptide	N	MS	Asp	Tyr	Gln	Glu	Arg	Met	Asn	Lys	Vidmar et al., 2017
Caprin-1	Q14444		peptide-Glu533+Thr-peptide	N	MS	Asn	Glu	Pro	Glu	Thr	Leu	Lys	Gln	Vidmar et al., 2017
Caprin-1	Q14444		peptide-Glu238+Arg-peptide	N	MS	Glu	Ile	Val	Glu	Arg	Val	Phe	Gln	Vidmar et al., 2017
Caprin-1	Q14444		peptide-Glu111+Leu-peptide	N	MS	Phe	Ala	Lys	Glu	Leu	Gln	Arg	Ser	Vidmar et al., 2017
Caprin-1	Q14444		peptide-Glu414+Ser-peptide	N	MS	Val	His	Ser	Glu	Ser	Arg	Leu	Ala	Vidmar et al., 2017
Caprin-1	Q14444		peptide-Glu208+His-peptide	N	MS	Glu	Gln	Tyr	Glu	His	Ala	Ser	Ile	Vidmar et al., 2017
Caprin-1	Q14444		peptide-Glu302+Thr-peptide	N	MS	Phe	Met	Ala	Glu	Thr	Gln	Phe	Thr	Vidmar et al., 2017
Caprin-1	Q14444		peptide-Glu440+Gly-peptide	N	MS	Ser	Thr	Ser	Glu	Gly	Tyr	Thr	Ala	Vidmar et al., 2017
Caprin-1	Q14444		peptide-Glu52+Ala-peptide	N	MS	Val	Gln	Thr	Glu	Ala	Met	Lys	Gln	Vidmar et al., 2017
Carbonyl reductase [NADPH] 3	O75828		peptide-Glu165+Gly-peptide	N	MS	Thr	Leu	Thr	Glu	Gly	Asp	Leu	Val	Vidmar et al., 2017
CAST protein	Q6AZE3	26-51	peptide-Glu36+Ser-peptide	N	MS	Ala	Gly	Gly	Glu	Ser	Val	Ala	Gly	Schilling & Overall, 2008
CAST protein	Q6AZE3	1-592	peptide-Glu327+Ala-peptide	N	MS	Asp	Ala	Val	Glu	Ala	Leu	Ala	Asp	Schilling & Overall, 2008
Catechol O-methyltransferase	P21964		peptide-Glu258+Lys-peptide	N	MS	Asp	Gly	Leu	Glu	Lys	Ala	Ile	Tyr	Vidmar et al., 2017
Catechol O-methyltransferase	P21964		peptide-Glu56+Gln-peptide	N	MS	Asp	Thr	Lys	Glu	Gln	Arg	Ile	Leu	Vidmar et al., 2017
Catenin alpha-1	P35221		peptide-Glu183+Val-peptide	N	MS	Leu	Lys	Pro	Glu	Val	Asp	Lys	Leu	Vidmar et al., 2017
cathelicidin antimicrobial peptide	P49913	134-170	peptide-Glu149+Phe-peptide	P		Ile	Gly	Lys	Glu	Phe	Lys	Arg	Ile	Sieprawska-Lupa et al., 2004	22742
cathelicidin antimicrobial peptide	P49913	134-170	peptide-Glu144+Lys-peptide	P		Lys	Ser	Lys	Glu	Lys	Ile	Gly	Lys	Sieprawska-Lupa et al., 2004	22743
Cathepsin B	P07858		peptide-Lys79+Leu-peptide	N	MS	Glu	Asp	Leu	Lys	Leu	Pro	Ala	Ser	Vidmar et al., 2017
Cathepsin D	P07339		peptide-Glu310+Leu-peptide	N	MS	Glu	Val	Arg	Glu	Leu	Gln	Lys	Ala	Vidmar et al., 2017
Cathepsin D	P07339		peptide-Glu278+Val-peptide	N	MS	Asp	Gln	Val	Glu	Val	Ala	Ser	Gly	Vidmar et al., 2017
Cathepsin D	P07339		peptide-Glu69+Val-peptide	N	MS	Pro	Ile	Pro	Glu	Val	Leu	Lys	Asn	Vidmar et al., 2017
Cathepsin Z	Q9UBR2		peptide-Glu163+Cys-peptide	N	MS	Lys	Asp	Gln	Glu	Cys	Asp	Lys	Phe	Vidmar et al., 2017
Caveolae-associated protein 1	Q6NZI2		peptide-Glu219+Arg-peptide	N	MS	Ser	Arg	Ala	Glu	Arg	Ile	Lys	Arg	Vidmar et al., 2017
Caveolae-associated protein 1	Q6NZI2		peptide-Glu142+Ala-peptide	N	MS	Glu	Val	Asn	Glu	Ala	Glu	Leu	Leu	Vidmar et al., 2017
Caveolae-associated protein 1	Q6NZI2		peptide-Glu92+Leu-peptide	N	MS	Ile	Gln	Gly	Glu	Leu	Ser	Lys	Leu	Vidmar et al., 2017
Caveolae-associated protein 1	Q6NZI2		peptide-Glu185+Leu-peptide	N	MS	Glu	Gly	Glu	Glu	Leu	Gly	Glu	Gly	Vidmar et al., 2017
Caveolae-associated protein 1	Q6NZI2		peptide-Glu159+Val-peptide	N	MS	Tyr	Gln	Asp	Glu	Val	Lys	Leu	Pro	Vidmar et al., 2017
Caveolae-associated protein 1	Q6NZI2		peptide-Glu271+Lys-peptide	N	MS	His	Thr	Leu	Glu	Lys	Arg	Met	Asn	Vidmar et al., 2017
Caveolae-associated protein 1	Q6NZI2		peptide-Glu129+Arg-peptide	N	MS	Gly	Ser	Leu	Glu	Arg	Gln	Ala	Gly	Vidmar et al., 2017
Caveolae-associated protein 1	Q6NZI2		peptide-Glu343+Val-peptide	N	MS	Glu	Met	Val	Glu	Val	Gly	Ala	Asp	Vidmar et al., 2017
Caveolae-associated protein 1	Q6NZI2		peptide-Glu340+Met-peptide	N	MS	Lys	Ala	Thr	Glu	Met	Val	Glu	Val	Vidmar et al., 2017
Caveolin-1	Q03135		peptide-Glu10+Gly-peptide	N	MS	Val	Asp	Ser	Glu	Gly	His	Leu	Tyr	Vidmar et al., 2017
Caveolin-1	Q03135		peptide-Glu38+Lys-peptide	N	MS	Glu	Leu	Ser	Glu	Lys	Gln	Val	Tyr	Vidmar et al., 2017
CCT7 protein	Q6IBT3	106-123	QVKPYVEE+GLHPQIIIR	N	MS	Tyr	Val	Glu	Glu	Gly	Leu	His	Pro	Schilling & Overall, 2008
CCT7 protein	Q6IBT3	1-543	peptide-Glu413+Met-peptide	N	MS	Gly	Ala	Ile	Glu	Met	Glu	Leu	Ser	Schilling & Overall, 2008
CD151 antigen	P48509		peptide-Glu124+Asn-peptide	N	MS	Glu	Leu	Lys	Glu	Asn	Leu	Lys	Asp	Vidmar et al., 2017
CD151 antigen	P48509		peptide-Glu174+Ala-peptide	N	MS	Arg	Ser	Gln	Glu	Ala	Gly	Gly	Arg	Vidmar et al., 2017
CD166 antigen	Q13740		peptide-Glu413+Gly-peptide	N	MS	Leu	Ile	Val	Glu	Gly	Lys	Pro	Gln	Vidmar et al., 2017
CD166 antigen	Q13740		peptide-Glu118+Asp-peptide	N	MS	Leu	Val	Thr	Glu	Asp	Asn	Val	Phe	Vidmar et al., 2017
CD166 antigen	Q13740		peptide-Glu181+Gly-peptide	N	MS	His	Pro	Leu	Glu	Gly	Ala	Val	Val	Vidmar et al., 2017
CD44 antigen	P16070		peptide-Glu37+Lys-peptide	N	MS	Phe	His	Val	Glu	Lys	Asn	Gly	Arg	Vidmar et al., 2017
CD44 antigen	P16070		peptide-Glu708+Met-peptide	N	MS	Lys	Ser	Gln	Glu	Met	Val	His	Leu	Vidmar et al., 2017
CD44 antigen	P16070		peptide-Glu729+Thr-peptide	N	MS	Thr	Ala	Asp	Glu	Thr	Arg	Asn	Leu	Vidmar et al., 2017
CD59 glycoprotein	P13987		peptide-Glu68+His-peptide	N	MS	Trp	Lys	Phe	Glu	His	Cys	Asn	Phe	Vidmar et al., 2017
CD81 antigen	P60033	148-171	peptide-Glu152+Thr-peptide	N	MS	Thr	Phe	His	Glu	Thr	Leu	Asp	Cys	Schilling & Overall, 2008
CD9 antigen	P21926		peptide-Glu123+Phe-peptide	N	MS	Glu	Val	Gln	Glu	Phe	Tyr	Lys	Asp	Vidmar et al., 2017
CD97 antigen	P48960		peptide-Glu492+Leu-peptide	N	MS	Pro	Arg	Gln	Glu	Leu	Leu	Cys	Ala	Vidmar et al., 2017
CD97 antigen	P48960		peptide-Glu470+Ser-peptide	N	MS	Ser	His	Leu	Glu	Ser	Ser	Asp	Gly	Vidmar et al., 2017
CD97 antigen	P48960		peptide-Glu457+Leu-peptide	N	MS	Asn	Thr	Lys	Glu	Leu	Asn	Ser	Pro	Vidmar et al., 2017
Cdc42-interacting protein 4	Q15642		peptide-Glu432+Lys-peptide	N	MS	Asp	Val	Tyr	Glu	Lys	Thr	Pro	Gln	Vidmar et al., 2017
Cdc42-interacting protein 4	Q15642		peptide-Glu79+Val-peptide	N	MS	Ile	Leu	Gln	Glu	Val	Asn	Asp	Phe	Vidmar et al., 2017
CDGSH iron sulfur domain-containing protein 2	Q8N5K1	116-131	HNE+LTGDNVGPLILK	N	MS	-	His	Asn	Glu	Leu	Thr	Gly	Asp	Schilling & Overall, 2008
cDNA FLJ20030 fis, clone ADSU02156	Q9NXW1	1-412	peptide-Glu393+Asp-peptide	N	MS	Asp	Tyr	Arg	Glu	Asp	Gly	Val	Thr	Schilling & Overall, 2008
cDNA FLJ25678 fis, clone TST04067, highly similar to PURINE NUCLEOSIDE PHOSPHORYLASE	Q8N7G1	11-22	NTAE+WLLSHTK	N	MS	Asn	Thr	Ala	Glu	Trp	Leu	Leu	Ser	Schilling & Overall, 2008
cDNA FLJ25678 fis, clone TST04067, highly similar to PURINE NUCLEOSIDE PHOSPHORYLASE	Q8N7G1	1-293	peptide-Glu190+Leu-peptide	N	MS	Glu	Gln	Arg	Glu	Leu	Gln	Glu	Gly	Schilling & Overall, 2008
cDNA FLJ26079 fis, clone RCT03187	Q6ZPC3	72-97	peptide-Phe86+Met-peptide	N	MS	Pro	Pro	Trp	Phe	Met	Ala	His	Leu	Schilling & Overall, 2008
cDNA FLJ26567 fis, clone LNF05260, highly similar to Annexin VI	Q6ZP35	1-330	peptide-Glu27+Ala-peptide	N	MS	Gln	Asp	Ala	Glu	Ala	Leu	Tyr	Thr	Schilling & Overall, 2008
cDNA FLJ35170 fis, clone PLACE6012942, highly similar to SPLICING FACTOR, ARGININE/SERINE-RICH 2	Q8NAK9	1-24	peptide-Glu11+Gly-peptide	N	MS	Pro	Asp	Val	Glu	Gly	Met	Thr	Ser	Schilling & Overall, 2008
cDNA FLJ36307 fis, clone THYMU2004906, moderately similar to SPLICING FACTOR, ARGININE/SERINE-RICH 2	Q8N220	1-24	peptide-Glu11+Gly-peptide	N	MS	Pro	Asp	Val	Glu	Gly	Met	Thr	Ser	Schilling & Overall, 2008
cDNA FLJ44434 fis, clone UTERU2019491, moderately similar to Homo sapiens 41-kDa phosphoribosylpyrophosphate synthetase-associat	Q6ZTP6	96-117	peptide-Glu104+Val-peptide	N	MS	Ala	Ile	Asp	Glu	Val	Val	Val	Thr	Schilling & Overall, 2008
cDNA FLJ45706 fis, clone FEBRA2028457, highly similar to Nucleolin	Q6ZS99	520-541	peptide-Glu527+Ile-peptide	N	MS	Glu	Asp	Gly	Glu	Ile	Asp	Gly	Asn	Schilling & Overall, 2008
cDNA FLJ45706 fis, clone FEBRA2028457, highly similar to Nucleolin	Q6ZS99	1-603	peptide-Glu301+Leu-peptide	N	MS	Thr	Gln	Asp	Glu	Leu	Lys	Glu	Val	Schilling & Overall, 2008
cDNA FLJ45706 fis, clone FEBRA2028457, highly similar to Nucleolin	Q6ZS99	1-603	peptide-Glu422+Phe-peptide	N	MS	Ala	Phe	Ile	Glu	Phe	Ala	Ser	Phe	Schilling & Overall, 2008
cDNA FLJ45706 fis, clone FEBRA2028457, highly similar to Nucleolin	Q6ZS99	1-603	peptide-Glu474+Asp-peptide	N	MS	Gly	Leu	Ser	Glu	Asp	Thr	Thr	Glu	Schilling & Overall, 2008
cDNA FLJ45706 fis, clone FEBRA2028457, highly similar to Nucleolin	Q6ZS99	1-603	peptide-Glu478+Glu-peptide	N	MS	Asp	Thr	Thr	Glu	Glu	Thr	Leu	Lys	Schilling & Overall, 2008
cDNA FLJ45706 fis, clone FEBRA2028457, highly similar to Nucleolin	Q6ZS99	1-603	peptide-Glu479+Thr-peptide	N	MS	Thr	Thr	Glu	Glu	Thr	Leu	Lys	Glu	Schilling & Overall, 2008
cDNA FLJ75116, highly similar to Homo sapiens annexin A6, transcript variant 1, mRNA	A8K3Q7	377-393	GLGTDE+DTIIDIITHR	N	MS	Gly	Thr	Asp	Glu	Asp	Thr	Ile	Ile	Schilling & Overall, 2008
cDNA FLJ75116, highly similar to Homo sapiens annexin A6, transcript variant 1, mRNA	A8K3Q7	1-673	peptide-Glu27+Ala-peptide	N	MS	Gln	Asp	Ala	Glu	Ala	Leu	Tyr	Thr	Schilling & Overall, 2008
cDNA FLJ75116, highly similar to Homo sapiens annexin A6, transcript variant 1, mRNA	A8K3Q7	1-673	peptide-Glu168+Asp-peptide	N	MS	Thr	Arg	Glu	Glu	Asp	Asp	Val	Val	Schilling & Overall, 2008
cDNA FLJ75282, highly similar to Homo sapiens eukaryotic translation initiation factor 3, subunit 5 epsilon, 47kDa	A8K0S2	1-357	peptide-Glu130+Val-peptide	N	MS	His	Ser	Val	Glu	Val	Thr	Asn	Cys	Schilling & Overall, 2008
cDNA FLJ75299, highly similar to Xenopus laevis proteasome	A8K781	177-193	QIQELVE+AIVLPMNHK	N	MS	Glu	Leu	Val	Glu	Ala	Ile	Val	Leu	Schilling & Overall, 2008
cDNA FLJ76077, highly similar to Homo sapiens hydroxymethylbilane synthase	A8K2L0	255-272	HLE+GGCSVPVAVHTAMK	N	MS	-	His	Leu	Glu	Gly	Gly	Cys	Ser	Schilling & Overall, 2008
cDNA FLJ76314, highly similar to Homo sapiens WD repeat domain 1	A8K6E9	1-606	peptide-Glu482+Gly-peptide	N	MS	Leu	Lys	Asp	Glu	Gly	Lys	Leu	Leu	Schilling & Overall, 2008
cDNA FLJ76425, highly similar to Homo sapiens ATX1 antioxidant protein 1 homolog	A8KAJ8	39-56	VCIE+SEHSMDTLLATLK	N	MS	Val	Cys	Ile	Glu	Ser	Glu	His	Ser	Schilling & Overall, 2008
cDNA FLJ76434, highly similar to Homo sapiens protein phosphatase 2	A8K8B0	1-667	peptide-Glu422+Leu-peptide	N	MS	Ala	Ile	Val	Glu	Leu	Ala	Glu	Asp	Schilling & Overall, 2008
cDNA FLJ76436	A8K8F0	1-298	peptide-Glu185+Leu-peptide	N	MS	Cys	Lys	Leu	Glu	Leu	Gln	Gly	Val	Schilling & Overall, 2008
cDNA FLJ76585, highly similar to Homo sapiens brix domain containing 2	A8K0P5	295-326	peptide-Glu317+Ile-peptide	N	MS	Lys	Pro	Ile	Glu	Ile	Gln	Trp	Val	Schilling & Overall, 2008
cDNA FLJ76605, highly similar to Homo sapiens secretory carrier membrane protein 1	A8K2G0	1-338	peptide-Glu79+His-peptide	N	MS	Ile	Ala	Lys	Glu	His	Ala	Leu	Ala	Schilling & Overall, 2008
cDNA FLJ76616, highly similar to Homo sapiens ribulose-5-phosphate-3- epimerase	A8K4S0	1-228	peptide-Glu219+Ala-peptide	N	MS	Val	Cys	Ser	Glu	Ala	Ala	Gln	Lys	Schilling & Overall, 2008
cDNA FLJ76616, highly similar to Homo sapiens ribulose-5-phosphate-3- epimerase	A8K4S0	1-228	peptide-Glu204+Asp-peptide	N	MS	Met	Arg	Ser	Glu	Asp	Pro	Arg	Ser	Schilling & Overall, 2008
cDNA FLJ77456, highly similar to Homo sapiens interleukin enhancer binding factor 3, 90kDa	A8K590	17-40	peptide-Glu29+Ala-peptide	N	MS	Glu	Glu	Leu	Glu	Ala	Val	Gln	Asn	Schilling & Overall, 2008
cDNA FLJ77456, highly similar to Homo sapiens interleukin enhancer binding factor 3, 90kDa	A8K590	17-40	peptide-Glu27+Leu-peptide	N	MS	Thr	Gln	Glu	Glu	Leu	Glu	Ala	Val	Schilling & Overall, 2008
cDNA FLJ77456, highly similar to Homo sapiens interleukin enhancer binding factor 3, 90kDa	A8K590	1-702	peptide-Glu178+Glu-peptide	N	MS	Val	Val	Arg	Glu	Glu	Met	Glu	Lys	Schilling & Overall, 2008
cDNA FLJ77456, highly similar to Homo sapiens interleukin enhancer binding factor 3, 90kDa	A8K590	1-702	peptide-Glu51+Gln-peptide	N	MS	Trp	Ile	Asp	Glu	Gln	Glu	Lys	Gly	Schilling & Overall, 2008
cDNA FLJ77693, highly similar to Homo sapiens calpastatin	A8K8C4	1-431	peptide-Glu158+Ala-peptide	N	MS	Asp	Ala	Val	Glu	Ala	Leu	Ala	Asp	Schilling & Overall, 2008
cDNA FLJ77695, highly similar to Homo sapiens chaperonin containing TCP1, subunit 7	A8K7E6	106-123	QVKPYVEE+GLHPQIIIR	N	MS	Tyr	Val	Glu	Glu	Gly	Leu	His	Pro	Schilling & Overall, 2008
cDNA FLJ77695, highly similar to Homo sapiens chaperonin containing TCP1, subunit 7	A8K7E6	1-543	peptide-Glu413+Met-peptide	N	MS	Gly	Ala	Ile	Glu	Met	Glu	Leu	Ser	Schilling & Overall, 2008
cDNA FLJ77848	A8K7Q2	1-410	peptide-Glu262+Asn-peptide	N	MS	Thr	Gly	Lys	Glu	Asn	Lys	Ile	Thr	Schilling & Overall, 2008
cDNA, FLJ92534, highly similar to Homo sapiens heat shock 60kDa protein 1	B2R5M6	180-191	E+IGNIISDAMK	N	MS	-	-	-	Glu	Ile	Gly	Asn	Ile	Schilling & Overall, 2008
cDNA, FLJ92534, highly similar to Homo sapiens heat shock 60kDa protein 1	B2R5M6	269-290	peptide-Glu281+Ala-peptide	N	MS	Val	Asp	Gly	Glu	Ala	Leu	Ser	Thr	Schilling & Overall, 2008
cDNA, FLJ92534, highly similar to Homo sapiens heat shock 60kDa protein 1	B2R5M6	236-249	CEFQD+AYVLLSEK	N	MS	Glu	Phe	Gln	Asp	Ala	Tyr	Val	Leu	Schilling & Overall, 2008
cDNA, FLJ92534, highly similar to Homo sapiens heat shock 60kDa protein 1	B2R5M6	314-344	peptide-Glu335+Asp-peptide	N	MS	Leu	Asn	Leu	Glu	Asp	Val	Gln	Pro	Schilling & Overall, 2008
cDNA, FLJ92534, highly similar to Homo sapiens heat shock 60kDa protein 1	B2R5M6	429-446	AAVEE+GIVLGGGCALLR	N	MS	Ala	Val	Glu	Glu	Gly	Ile	Val	Leu	Schilling & Overall, 2008
cDNA, FLJ92534, highly similar to Homo sapiens heat shock 60kDa protein 1	B2R5M6	551-573	peptide-Glu553+Lys-peptide	N	MS	-	-	Glu	Glu	Lys	Asp	Pro	Gly	Schilling & Overall, 2008
cDNA, FLJ92534, highly similar to Homo sapiens heat shock 60kDa protein 1	B2R5M6	493-516	peptide-Glu500+Val-peptide	N	MS	Ser	Ser	Ser	Glu	Val	Gly	Tyr	Asp	Schilling & Overall, 2008
cDNA, FLJ92534, highly similar to Homo sapiens heat shock 60kDa protein 1	B2R5M6	344-359	VGE+VIVTKDDAMLLK	N	MS	-	Val	Gly	Glu	Val	Ile	Val	Thr	Schilling & Overall, 2008
cDNA, FLJ92534, highly similar to Homo sapiens heat shock 60kDa protein 1	B2R5M6	1-573	peptide-Glu238+Phe-peptide	N	MS	Gln	Lys	Cys	Glu	Phe	Gln	Asp	Ala	Schilling & Overall, 2008
cDNA, FLJ92534, highly similar to Homo sapiens heat shock 60kDa protein 1	B2R5M6	1-573	peptide-Glu486+Gly-peptide	N	MS	Ala	Gly	Val	Glu	Gly	Ser	Leu	Ile	Schilling & Overall, 2008
cDNA, FLJ92546, highly similar to Homo sapiens inner membrane protein, mitochondrial	B2R5N6	600-623	peptide-Glu607+Phe-peptide	N	MS	Ser	Asp	Asn	Glu	Phe	Thr	Gln	Ala	Schilling & Overall, 2008
cDNA, FLJ92546, highly similar to Homo sapiens inner membrane protein, mitochondrial	B2R5N6	1-758	peptide-Glu264+Ile-peptide	N	MS	Asp	Asn	Ser	Glu	Ile	Ala	Gly	Glu	Schilling & Overall, 2008
cDNA, FLJ92657, highly similar to Homo sapiens heterogeneous nuclear ribonucleoprotein C	B2R5W2	99-117	SAAE+MYGSSFDLDYDFQR	N	MS	Ser	Ala	Ala	Glu	Met	Tyr	Gly	Ser	Schilling & Overall, 2008
cDNA, FLJ92657, highly similar to Homo sapiens heterogeneous nuclear ribonucleoprotein C	B2R5W2	1-290	peptide-Glu186+Leu-peptide	N	MS	Ile	Lys	Lys	Glu	Leu	Thr	Gln	Ile	Schilling & Overall, 2008
cDNA, FLJ92782, highly similar to Homo sapiens damage-specific DNA binding protein 1, 127kDa	B2R648	1104-1122	MQE+VVANLQYDDGSGMKR	N	MS	-	Met	Gln	Glu	Val	Val	Ala	Asn	Schilling & Overall, 2008
cDNA, FLJ92782, highly similar to Homo sapiens damage-specific DNA binding protein 1, 127kDa	B2R648	1-1140	peptide-Glu1123+Ala-peptide	N	MS	Met	Lys	Arg	Glu	Ala	Thr	Ala	Asp	Schilling & Overall, 2008
cDNA, FLJ92798, highly similar to Homo sapiens annexin A7	B2R657	199-215	GFGTDE+QAIVDVVANR	N	MS	Gly	Thr	Asp	Glu	Gln	Ala	Ile	Val	Schilling & Overall, 2008
cDNA, FLJ93750, Homo sapiens DEAD	B2R858	436-455	SIEEQLGTE+IKPIPSNIDK	N	MS	Leu	Gly	Thr	Glu	Ile	Lys	Pro	Ile	Schilling & Overall, 2008
cDNA, FLJ93750, Homo sapiens DEAD	B2R858	455-472	SLYVAE+YHSEPVEDEKP	N	MS	Tyr	Val	Ala	Glu	Tyr	His	Ser	Glu	Schilling & Overall, 2008
cDNA, FLJ94117, highly similar to Homo sapiens actinin, alpha 3	B2R8Y4	345-358	CQLE+INFNTLQTK	N	MS	Cys	Gln	Leu	Glu	Ile	Asn	Phe	Asn	Schilling & Overall, 2008
cDNA, FLJ95045, highly similar to Homo sapiens vesicle docking protein p115	B2RAQ0	1-962	peptide-Glu19+Ala-peptide	N	MS	Gln	His	Thr	Glu	Ala	Glu	Thr	Ile	Schilling & Overall, 2008
cDNA, FLJ95457, highly similar to Homo sapiens tubulin, beta, 4	B2RBD5	103-121	GHYTE+GAELVDSVLDVVR	N	MS	His	Tyr	Thr	Glu	Gly	Ala	Glu	Leu	Schilling & Overall, 2008
cDNA, FLJ95457, highly similar to Homo sapiens tubulin, beta, 4	B2RBD5	103-121	GHYTEGAE+LVDSVLDVVR	N	MS	Glu	Gly	Ala	Glu	Leu	Val	Asp	Ser	Schilling & Overall, 2008
cDNA, FLJ95666, highly similar to Homo sapiens albumin	B2RBS8	1-609	peptide-Glu251+Phe-peptide	N	MS	Pro	Lys	Ala	Glu	Phe	Ala	Glu	Val	Schilling & Overall, 2008
cDNA, FLJ96210, Homo sapiens DEAD	B2RCQ3	410-424	EDGE+ALLILLPSEK	N	MS	Glu	Asp	Gly	Glu	Ala	Leu	Leu	Ile	Schilling & Overall, 2008
cDNA, FLJ96429, Homo sapiens small acidic protein	B2RD28	144-164	EESAEE+LQAAEHPDEVEDPK	N	MS	Ser	Ala	Glu	Glu	Leu	Gln	Ala	Ala	Schilling & Overall, 2008
cDNA, FLJ96429, Homo sapiens small acidic protein	B2RD28	1-183	peptide-Glu28+Ala-peptide	N	MS	Ser	Asn	Trp	Glu	Ala	Ala	Asp	Leu	Schilling & Overall, 2008
cDNA, FLJ96767, highly similar to Homo sapiens calpastatin	B2RDU1	1-430	peptide-Glu158+Ala-peptide	N	MS	Asp	Ala	Val	Glu	Ala	Leu	Ala	Asp	Schilling & Overall, 2008
Cell cycle and apoptosis regulator protein 2	Q8N163		peptide-Glu651+Leu-peptide	N	MS	Leu	Asp	Pro	Glu	Leu	Leu	Leu	Leu	Vidmar et al., 2017
Cell division control protein 42 homolog	P60953		peptide-Glu127+Lys-peptide	N	MS	Ser	Thr	Ile	Glu	Lys	Leu	Ala	Lys	Vidmar et al., 2017
Cell division control protein 42 homolog	P60953		peptide-Glu156+Cys-peptide	N	MS	Lys	Tyr	Val	Glu	Cys	Ser	Ala	Leu	Vidmar et al., 2017
Cell division control protein 42 homolog	P60953		peptide-Glu143+Lys-peptide	N	MS	Glu	Thr	Ala	Glu	Lys	Leu	Ala	Arg	Vidmar et al., 2017
cell division cycle 5-like protein	Q99459	1-802	peptide-Glu389+Ser-peptide	N	MS	Pro	Leu	His	Glu	Ser	Asp	Phe	Ser	Schilling & Overall, 2008
Cell division cycle 5-like protein	Q99459		peptide-Glu533+Met-peptide	N	MS	Arg	Val	Lys	Glu	Met	Lys	Arg	Met	Vidmar et al., 2017
Cell division cycle 5-like protein	Q99459		peptide-Glu474+His-peptide	N	MS	Glu	Ser	Arg	Glu	His	Leu	Arg	Leu	Vidmar et al., 2017
Cell division cycle 5-like protein	Q99459		peptide-Glu506+Ile-peptide	N	MS	Glu	Glu	Arg	Glu	Ile	Asp	Asp	Thr	Vidmar et al., 2017
Cell division cycle 5-like protein	Q99459		peptide-Glu365+Ala-peptide	N	MS	Ile	Leu	Gln	Glu	Ala	Gln	Asn	Leu	Vidmar et al., 2017
cell division cycle and apoptosis regulator protein 1	Q8IX12	1-1150	peptide-Glu189+Ala-peptide	N	MS	Val	Leu	Val	Glu	Ala	Thr	Tyr	Asn	Schilling & Overall, 2008
cell division protein ftsZ	P0A9A6	1-383	peptide-Glu322+Ile-peptide	N	MS	Lys	Arg	Pro	Glu	Ile	Thr	Leu	Val	Timmer et al., 2009
cell division protein zapB	P0AF36	1-81	peptide-Glu42+Val-peptide	N	MS	Leu	Ser	Gln	Glu	Val	Gln	Asn	Ala	Timmer et al., 2009
cell proliferation-inducing protein 52	B1H0U5	600-623	peptide-Glu607+Phe-peptide	N	MS	Ser	Asp	Asn	Glu	Phe	Thr	Gln	Ala	Schilling & Overall, 2008
cell proliferation-inducing protein 52	B1H0U5	1-758	peptide-Glu264+Ile-peptide	N	MS	Asp	Asn	Ser	Glu	Ile	Ala	Gly	Glu	Schilling & Overall, 2008
Cell surface glycoprotein MUC18	P43121		peptide-Glu620+Met-peptide	N	MS	Leu	Pro	Glu	Glu	Met	Gly	Leu	Leu	Vidmar et al., 2017
Cell surface glycoprotein MUC18	P43121		peptide-Glu240+Val-peptide	N	MS	Glu	Ser	Arg	Glu	Val	Thr	Val	Pro	Vidmar et al., 2017
Cell surface glycoprotein MUC18	P43121		peptide-Glu269+Ile-peptide	N	MS	Asp	Arg	Val	Glu	Ile	Arg	Cys	Leu	Vidmar et al., 2017
Cell surface glycoprotein MUC18	P43121		peptide-Glu387+Arg-peptide	N	MS	Gln	Val	Leu	Glu	Arg	Gly	Pro	Val	Vidmar et al., 2017
Cellular nucleic acid-binding protein	P62633		peptide-Glu142+Thr-peptide	N	MS	Arg	Cys	Gly	Glu	Thr	Gly	His	Val	Vidmar et al., 2017
Centrosomal protein of 170 kDa	Q5SW79		peptide-Glu656+Ser-peptide	N	MS	Lys	Ser	Leu	Glu	Ser	His	Arg	Ala	Vidmar et al., 2017
chaperone protein htpG	P0A6Z3	1-624	peptide-Glu503+Ala-peptide	N	MS	Ser	Ala	Lys	Glu	Ala	Glu	Lys	Ala	Timmer et al., 2009
chaperonin containing TCP1, subunit 7	Q53HV2	106-123	QVKPYVEE+GLHPQIIIR	N	MS	Tyr	Val	Glu	Glu	Gly	Leu	His	Pro	Schilling & Overall, 2008
chaperonin containing TCP1, subunit 7	Q53HV2	1-543	peptide-Glu413+Met-peptide	N	MS	Gly	Ala	Ile	Glu	Met	Glu	Leu	Ser	Schilling & Overall, 2008
Charged multivesicular body protein 1b	Q7LBR1		peptide-Glu32+Lys-peptide	N	MS	Glu	Lys	Ala	Glu	Lys	Ala	Lys	Ile	Vidmar et al., 2017
Charged multivesicular body protein 2a	O43633		peptide-Glu199+Ala-peptide	N	MS	Lys	Lys	Ala	Glu	Ala	Ala	Ala	Ser	Vidmar et al., 2017
Charged multivesicular body protein 2a	O43633		peptide-Glu213+Glu-peptide	N	MS	Ala	Asp	Leu	Glu	Glu	Arg	Leu	Lys	Vidmar et al., 2017
charged multivesicular body protein 2b	Q9UQN3	1-213	peptide-Glu16+Gln-peptide	N	MS	Val	Ile	Lys	Glu	Gln	Asn	Arg	Glu	Schilling & Overall, 2008
Charged multivesicular body protein 4b	Q9H444		peptide-Glu41+Phe-peptide	N	MS	Lys	Lys	Gln	Glu	Phe	Leu	Glu	Lys	Vidmar et al., 2017
Charged multivesicular body protein 5	Q9NZZ3		peptide-Glu147+Ala-peptide	N	MS	Glu	Ile	Gln	Glu	Ala	Leu	Ser	Arg	Vidmar et al., 2017
Charged multivesicular body protein 5	Q9NZZ3		peptide-Glu29+Ser-peptide	N	MS	Ser	Arg	Ala	Glu	Ser	Ile	Asp	Lys	Vidmar et al., 2017
chloride intracellular channel protein 1	O00299	2-241	peptide-Glu130+Lys-peptide	N	MS	Asp	Asn	Leu	Glu	Lys	Gly	Leu	Leu	Schilling & Overall, 2008
chloride intracellular channel protein 1	O00299	2-241	peptide-Glu218+Phe-peptide	N	MS	Ala	Arg	Glu	Glu	Phe	Ala	Ser	Thr	Schilling & Overall, 2008
Chloride intracellular channel protein 1	O00299		peptide-Glu102+Ser-peptide	N	MS	Leu	Asn	Pro	Glu	Ser	Asn	Thr	Ala	Vidmar et al., 2017
Chloride intracellular channel protein 1	O00299		peptide-Glu53+Thr-peptide	N	MS	Arg	Arg	Thr	Glu	Thr	Val	Gln	Lys	Vidmar et al., 2017
Chloride intracellular channel protein 1	O00299		peptide-Glu201+Ala-peptide	N	MS	Thr	Ile	Pro	Glu	Ala	Phe	Arg	Gly	Vidmar et al., 2017
Chloride intracellular channel protein 1	O00299		peptide-Glu72+Val-peptide	N	MS	Tyr	Gly	Thr	Glu	Val	His	Thr	Asp	Vidmar et al., 2017
Chloride intracellular channel protein 1	O00299		peptide-Glu160+Gly-peptide	N	MS	Ala	Glu	Asp	Glu	Gly	Val	Ser	Gln	Vidmar et al., 2017
Chloride intracellular channel protein 4	Q9Y696		peptide-Glu229+Phe-peptide	N	MS	Ser	Arg	Asp	Glu	Phe	Thr	Asn	Thr	Vidmar et al., 2017
Chloride intracellular channel protein 4	Q9Y696		peptide-Glu241+Ile-peptide	N	MS	Lys	Glu	Val	Glu	Ile	Ala	Tyr	Ser	Vidmar et al., 2017
chondroitin sulfate proteoglycan 4 precursor	Q6UVK1	30-2322	peptide-Glu1973+Glu-peptide	N	MS	Ser	Asp	Arg	Glu	Glu	Pro	Glu	Ala	Schilling & Overall, 2008
Chromatin complexes subunit BAP18	Q8IXM2		peptide-Glu70+Arg-peptide	N	MS	Val	Ile	Lys	Glu	Arg	Thr	Val	Ala	Vidmar et al., 2017
Chromobox protein homolog 1	P83916		peptide-Glu166+Arg-peptide	N	MS	Phe	Tyr	Glu	Glu	Arg	Leu	Thr	Trp	Vidmar et al., 2017
Chromobox protein homolog 1	P83916		peptide-Glu24+Lys-peptide	N	MS	Tyr	Val	Val	Glu	Lys	Val	Leu	Asp	Vidmar et al., 2017
Chromobox protein homolog 1	P83916		peptide-Glu66+Phe-peptide	N	MS	Leu	Ile	Ala	Glu	Phe	Leu	Gln	Ser	Vidmar et al., 2017
Chromobox protein homolog 3	Q13185		peptide-Glu170+Arg-peptide	N	MS	Phe	Tyr	Glu	Glu	Arg	Leu	Thr	Trp	Vidmar et al., 2017
Chromobox protein homolog 5	P45973		peptide-Glu65+Phe-peptide	N	MS	Leu	Ile	Ser	Glu	Phe	Met	Lys	Lys	Vidmar et al., 2017
Chromobox protein homolog 5	P45973		peptide-Glu155+Ala-peptide	N	MS	Leu	Ala	Lys	Glu	Ala	Asn	Val	Lys	Vidmar et al., 2017
CKLF-like MARVEL transmembrane domain-containing protein 6	Q9NX76		peptide-Glu169+Asn-peptide	N	MS	Arg	Lys	Pro	Glu	Asn	Thr	Thr	Arg	Vidmar et al., 2017
Clathrin heavy chain 1	Q00610		peptide-Glu1097+Phe-peptide	N	MS	Arg	Ala	Tyr	Glu	Phe	Ala	Glu	Arg	Vidmar et al., 2017
Clathrin heavy chain 1	Q00610		peptide-Glu1605+Tyr-peptide	N	MS	Val	Met	Lys	Glu	Tyr	Leu	Thr	Lys	Vidmar et al., 2017
Clathrin heavy chain 1	Q00610		peptide-Glu1172+Leu-peptide	N	MS	Val	Glu	Thr	Glu	Leu	Ile	Phe	Ala	Vidmar et al., 2017
Clathrin heavy chain 1	Q00610		peptide-Glu434+Leu-peptide	N	MS	Glu	Ser	Leu	Glu	Leu	Cys	Arg	Pro	Vidmar et al., 2017
Clathrin heavy chain 1	Q00610		peptide-Glu1123+Ala-peptide	N	MS	Met	Val	Lys	Glu	Ala	Ile	Asp	Ser	Vidmar et al., 2017
Clathrin heavy chain 1	Q00610		peptide-Glu1617+Ser-peptide	N	MS	Asp	Ala	Ser	Glu	Ser	Leu	Arg	Lys	Vidmar et al., 2017
Clathrin light chain A	P09496		peptide-Glu122+Ala-peptide	N	MS	Glu	Arg	Leu	Glu	Ala	Leu	Asp	Ala	Vidmar et al., 2017
Coactosin-like protein	Q14019		peptide-Glu111+Phe-peptide	N	MS	Phe	Ala	Lys	Glu	Phe	Val	Ile	Ser	Vidmar et al., 2017
Coactosin-like protein	Q14019		peptide-Glu128+Leu-peptide	N	MS	Ile	Lys	Ser	Glu	Leu	Lys	Lys	Ala	Vidmar et al., 2017
coagulation factor XIII A chain	P00488	1-732	Met-Ser+Thr-peptide	N	NT	-	Met	Ser	Glu	Thr	Ser	Arg	Thr	Takahashi et al., 1986
coagulation factor XIII A chain	P00488	2-732	peptide-Glu31+Leu-peptide	N	NT	Pro	Thr	Val	Glu	Leu	Gln	Gly	Val	Takahashi et al., 1986
coagulation factor XIII A chain	P00488	2-732	peptide-Glu44+Phe-peptide	N	NT	Asn	Leu	Gln	Glu	Phe	Leu	Asn	Val	Takahashi et al., 1986
coagulation factor XIII A chain	P00488	2-732	peptide-Glu125+Leu-peptide	N	NT	Ile	Val	Ser	Glu	Leu	Gln	Ser	Gly	Takahashi et al., 1986
coagulation factor XIII A chain	P00488	2-732	peptide-Asp140+Arg-peptide	N	NT	Met	Arg	Glu	Asp	Arg	Ser	Val	Arg	Takahashi et al., 1986
coagulation factor XIII A chain	P00488	2-732	peptide-Glu178+Thr-peptide	N	NT	Arg	Asn	Pro	Glu	Thr	Asp	Thr	Tyr	Takahashi et al., 1986
coagulation factor XIII A chain	P00488	2-732	peptide-Glu190+Asp-peptide	N	NT	Pro	Trp	Cys	Glu	Asp	Asp	Ala	Val	Takahashi et al., 1986
coagulation factor XIII A chain	P00488	2-732	peptide-Glu217+Val-peptide	N	NT	Phe	Tyr	Gly	Glu	Val	Asn	Asp	Ile	Takahashi et al., 1986
coagulation factor XIII A chain	P00488	2-732	peptide-Glu232+Asp-peptide	N	NT	Gly	Gln	Phe	Glu	Asp	Gly	Ile	Leu	Takahashi et al., 1986
coagulation factor XIII A chain	P00488	2-732	peptide-Glu273+Gly-peptide	N	NT	Lys	Asp	Asp	Glu	Gly	Val	Leu	Val	Takahashi et al., 1986
coagulation factor XIII A chain	P00488	2-732	peptide-Glu302+Tyr-peptide	N	NT	Ile	Leu	Leu	Glu	Tyr	Arg	Ser	Ser	Takahashi et al., 1986
coagulation factor XIII A chain	P00488	2-732	peptide-Asp368+Ser-peptide	N	NT	Leu	Thr	Lys	Asp	Ser	Val	Trp	Asn	Takahashi et al., 1986
coagulation factor XIII A chain	P00488	2-732	peptide-Glu378+Ala-peptide	N	NT	Cys	Trp	Asn	Glu	Ala	Trp	Met	Thr	Takahashi et al., 1986
coagulation factor XIII A chain	P00488	2-732	peptide-Glu435+Val-peptide	N	NT	Val	Phe	Ala	Glu	Val	Asn	Ser	Asp	Takahashi et al., 1986
coagulation factor XIII A chain	P00488	2-732	peptide-Asp448+Gly-peptide	N	NT	Ala	Lys	Lys	Asp	Gly	Thr	His	Val	Takahashi et al., 1986
coagulation factor XIII A chain	P00488	2-732	peptide-Glu454+Asn-peptide	N	NT	His	Val	Val	Glu	Asn	Val	Asp	Ala	Takahashi et al., 1986
coagulation factor XIII A chain	P00488	2-732	peptide-Glu486+Gly-peptide	N	NT	Lys	Phe	Gln	Glu	Gly	Gln	Glu	Glu	Takahashi et al., 1986
coagulation factor XIII A chain	P00488	2-732	peptide-Glu568+Phe-peptide	N	NT	Pro	Lys	Ala	Glu	Phe	Lys	Lys	Glu	Takahashi et al., 1986
coagulation factor XIII A chain	P00488	2-732	peptide-Glu572+Thr-peptide	N	NT	Phe	Lys	Lys	Glu	Thr	Phe	Asp	Val	Takahashi et al., 1986
coatomer subunit alpha	P53621	1-1224	peptide-Glu819+Gly-peptide	N	MS	Gly	Phe	Phe	Glu	Gly	Thr	Ile	Ala	Schilling & Overall, 2008
coatomer subunit alpha	P53621	1-1224	peptide-Glu202+Gly-peptide	N	MS	His	Val	Leu	Glu	Gly	His	Asp	Arg	Schilling & Overall, 2008
Coatomer subunit beta	P53618		peptide-Glu505+Ile-peptide	N	MS	Pro	Glu	Glu	Glu	Ile	Thr	Val	Gly	Vidmar et al., 2017
coatomer subunit delta variant 1	B0YIW5	435-448	NTLE+WCLPVIDAK	N	MS	Asn	Thr	Leu	Glu	Trp	Cys	Leu	Pro	Schilling & Overall, 2008
coatomer subunit delta variant 1	B0YIW5	233-243	E+VDNFVDKLK	N	MS	-	-	-	Glu	Val	Asp	Asn	Phe	Schilling & Overall, 2008
coatomer subunit delta variant 2	B0YIW6	476-489	NTLE+WCLPVIDAK	N	MS	Asn	Thr	Leu	Glu	Trp	Cys	Leu	Pro	Schilling & Overall, 2008
coatomer subunit delta variant 2	B0YIW6	274-284	E+VDNFVDKLK	N	MS	-	-	-	Glu	Val	Asp	Asn	Phe	Schilling & Overall, 2008
Coatomer subunit gamma-1	Q9Y678		peptide-Glu592+Ser-peptide	N	MS	Gln	Arg	Thr	Glu	Ser	Thr	Pro	Ile	Vidmar et al., 2017
Coatomer subunit zeta-1	P61923		peptide-Glu157+Gln-peptide	N	MS	Pro	Leu	Thr	Glu	Gln	Thr	Val	Ser	Vidmar et al., 2017
Coatomer subunit zeta-1	P61923		peptide-Glu45+Lys-peptide	N	MS	Lys	Ala	Phe	Glu	Lys	Asn	Ile	Phe	Vidmar et al., 2017
cofilin-1	P23528	53-73	E+ILVGDVGQTVDDPYATFVK	N	MS	-	-	-	Glu	Ile	Leu	Val	Gly	Schilling & Overall, 2008
Cofilin-1	P23528		peptide-Asp9+Gly-peptide	N	MS	Ala	Val	Ser	Asp	Gly	Val	Ile	Lys	Vidmar et al., 2017
Cofilin-1	P23528		peptide-Asp17+Met-peptide	N	MS	Val	Phe	Asn	Asp	Met	Lys	Val	Arg	Vidmar et al., 2017
Cofilin-1	P23528		peptide-Glu134+Leu-peptide	N	MS	Ile	Lys	His	Glu	Leu	Gln	Ala	Asn	Vidmar et al., 2017
Cofilin-1	P23528		peptide-Glu142+Val-peptide	N	MS	Cys	Tyr	Glu	Glu	Val	Lys	Asp	Arg	Vidmar et al., 2017
Cofilin-1	P23528		peptide-Glu151+Lys-peptide	N	MS	Thr	Leu	Ala	Glu	Lys	Leu	Gly	Gly	Vidmar et al., 2017
Cofilin-1	P23528		peptide-Asp122+Ala-peptide	N	MS	Ser	Ser	Lys	Asp	Ala	Ile	Lys	Lys	Vidmar et al., 2017
Cofilin-1	P23528		peptide-Ala118+Ser-peptide	N	MS	Met	Ile	Tyr	Ala	Ser	Ser	Lys	Asp	Vidmar et al., 2017
Cofilin-1	P23528		peptide-Glu42+Asp-peptide	N	MS	Cys	Leu	Ser	Glu	Asp	Lys	Lys	Asn	Vidmar et al., 2017
coiled-coil domain-containing protein 124	Q96CT7	1-223	peptide-Glu101+Asp-peptide	N	MS	Ala	Gln	Ile	Glu	Asp	Thr	Leu	Arg	Schilling & Overall, 2008
Coiled-coil domain-containing protein 124	Q96CT7		peptide-Glu203+Trp-peptide	N	MS	Leu	Lys	Lys	Glu	Trp	Leu	Arg	Ser	Vidmar et al., 2017
Coiled-coil domain-containing protein 47	Q96A33		peptide-Glu440+Lys-peptide	N	MS	Lys	Arg	Ala	Glu	Lys	Glu	Arg	Ile	Vidmar et al., 2017
Coiled-coil domain-containing protein 58	Q4VC31		peptide-Glu18+Leu-peptide	N	MS	Glu	Phe	Gln	Glu	Leu	Leu	Lys	Val	Vidmar et al., 2017
coiled-coil domain-containing protein 86	Q9H6F5	1-360	peptide-Glu203+Thr-peptide	N	MS	Pro	Ala	Gly	Glu	Thr	Val	Thr	Gly	Schilling & Overall, 2008
Coiled-coil-helix-coiled-coil-helix domain-containing protein 2	Q9Y6H1		peptide-Glu139+Val-peptide	N	MS	Gly	Phe	Asn	Glu	Val	Leu	Lys	Gln	Vidmar et al., 2017
Cold-inducible RNA-binding protein	Q14011		peptide-Gly136+Gly-peptide	N	MS	Gly	Gly	Tyr	Gly	Gly	Ser	Arg	Asp	Vidmar et al., 2017
Cold-inducible RNA-binding protein	Q14011		peptide-Glu42+Thr-peptide	N	MS	Lys	Asp	Arg	Glu	Thr	Gln	Arg	Ser	Vidmar et al., 2017
Cold-inducible RNA-binding protein	Q14011		peptide-Glu5+Gly-peptide	N	MS	Ala	Ser	Asp	Glu	Gly	Lys	Leu	Phe	Vidmar et al., 2017
collagenase	P08897	31-260	peptide-Glu36+Ala-peptide	N	NT	Asn	Gly	Tyr	Glu	Ala	Tyr	Thr	Gly	Lecroisey et al., 1987
collagenase	P08897	31-260	peptide-Asp49+Ile-peptide	N	NT	Ala	Gly	Leu	Asp	Ile	Thr	Leu	Gln	Lecroisey et al., 1987
collagenase	P08897	31-260	peptide-Asp66+Asn-peptide	N	NT	Ser	Leu	Ile	Asp	Asn	Lys	Trp	Ile	Lecroisey et al., 1987
collagenase	P08897	31-260	peptide-Glu94+Gly-peptide	N	NT	Val	Gln	Tyr	Glu	Gly	Glu	Ala	Val	Lecroisey et al., 1987
collagenase	P08897	31-260	peptide-Glu102+Arg-peptide	N	NT	Val	Asn	Ser	Glu	Arg	Ile	Ile	Ser	Lecroisey et al., 1987
collagenase	P08897	31-260	peptide-Asp118+Val-peptide	N	NT	Tyr	Leu	Asn	Asp	Val	Ala	Leu	Ile	Lecroisey et al., 1987
collagenase	P08897	31-260	peptide-Glu128+Tyr-peptide	N	NT	Pro	His	Val	Glu	Tyr	Thr	Asp	Asn	Lecroisey et al., 1987
collagenase	P08897	31-260	peptide-Glu143+Leu-peptide	N	NT	Ser	Gly	Glu	Glu	Leu	Asn	Asn	Lys	Lecroisey et al., 1987
collagenase	P08897	31-260	peptide-Asp164+Thr-peptide	N	NT	Ser	Asn	Thr	Asp	Thr	Val	Ile	Leu	Lecroisey et al., 1987
collagenase	P08897	31-260	peptide-Glu184+Tyr-peptide	N	NT	Cys	Ala	Gln	Glu	Tyr	Pro	Pro	Gly	Lecroisey et al., 1987
collagenase	P08897	31-260	peptide-Glu192+Ser-peptide	N	NT	Ile	Ile	Val	Glu	Ser	Thr	Ile	Cys	Lecroisey et al., 1987
Complement component 1 Q subcomponent-binding protein, mitochondrial	Q07021		peptide-Glu93+Arg-peptide	N	MS	Ile	Lys	Glu	Glu	Arg	Lys	Ile	Gln	Vidmar et al., 2017
Complement component 1 Q subcomponent-binding protein, mitochondrial	Q07021		peptide-Glu92+Glu-peptide	N	MS	Glu	Ile	Lys	Glu	Glu	Arg	Lys	Ile	Vidmar et al., 2017
Complement component 1 Q subcomponent-binding protein, mitochondrial	Q07021		peptide-Glu267+Tyr-peptide	N	MS	Glu	His	Gln	Glu	Tyr	Ile	Thr	Phe	Vidmar et al., 2017
Complement component 1 Q subcomponent-binding protein, mitochondrial	Q07021		peptide-Ser73+Leu-peptide	N	MS	Gly	Cys	Gly	Ser	Leu	His	Thr	Asp	Vidmar et al., 2017
Complement component 1 Q subcomponent-binding protein, mitochondrial	Q07021		peptide-Glu273+Asp-peptide	N	MS	Thr	Phe	Leu	Glu	Asp	Leu	Lys	Ser	Vidmar et al., 2017
Complement component 1 Q subcomponent-binding protein, mitochondrial	Q07021		peptide-Glu117+Ala-peptide	N	MS	Asn	Gly	Thr	Glu	Ala	Lys	Leu	Val	Vidmar et al., 2017
Complement component 1 Q subcomponent-binding protein, mitochondrial	Q07021		peptide-Glu192+Val-peptide	N	MS	Pro	Glu	Asp	Glu	Val	Gly	Gln	Glu	Vidmar et al., 2017
Complement component 1 Q subcomponent-binding protein, mitochondrial	Q07021		peptide-Glu258+Leu-peptide	N	MS	Glu	Leu	Val	Glu	Leu	Ser	Thr	Ala	Vidmar et al., 2017
condensin complex subunit 2	Q15003	1-741	peptide-Glu53+Asp-peptide	N	MS	Pro	Val	Leu	Glu	Asp	Phe	Pro	Gln	Schilling & Overall, 2008
condensin complex subunit 2	Q15003	1-741	peptide-Glu355+Val-peptide	N	MS	Ile	Asn	Ala	Glu	Val	Asp	Glu	Ser	Schilling & Overall, 2008
COP9 signalosome complex subunit 1	Q13098		peptide-Glu143+Lys-peptide	N	MS	Leu	Lys	Leu	Glu	Lys	Leu	Asp	Thr	Vidmar et al., 2017
COP9 signalosome complex subunit 4	Q9BT78	274-290	GNQLQE+FAAMLMPHQK	N	MS	Gln	Leu	Gln	Glu	Phe	Ala	Ala	Met	Schilling & Overall, 2008
COP9 signalosome complex subunit 5	Q92905		peptide-Glu27+Ile-peptide	N	MS	Ser	Ile	Asp	Glu	Ile	Tyr	Lys	Tyr	Vidmar et al., 2017
Copine-1	Q99829		peptide-Glu163+Phe-peptide	N	MS	Pro	Phe	Leu	Glu	Phe	Phe	Arg	Gln	Vidmar et al., 2017
Copine-1	Q99829		peptide-Glu145+Ala-peptide	N	MS	Met	Glu	Val	Glu	Ala	Arg	Asn	Leu	Vidmar et al., 2017
copine-3	O75131	1-537	peptide-Glu238+Ala-peptide	N	MS	Lys	Leu	Lys	Glu	Ala	Ser	Arg	Ser	Schilling & Overall, 2008
Copine-3	O75131		peptide-Glu146+Ala-peptide	N	MS	Phe	Glu	Met	Glu	Ala	Arg	Lys	Leu	Vidmar et al., 2017
Core histone macro-H2A.1	O75367		peptide-Glu112+Leu-peptide	N	MS	Ile	His	Pro	Glu	Leu	Leu	Ala	Lys	Vidmar et al., 2017
Core-binding factor subunit beta	Q13951		peptide-Glu26+Ile-peptide	N	MS	Arg	Glu	Cys	Glu	Ile	Lys	Tyr	Thr	Vidmar et al., 2017
Core-binding factor subunit beta	Q13951		peptide-Glu152+Phe-peptide	N	MS	Arg	Thr	Arg	Glu	Phe	Glu	Asp	Arg	Vidmar et al., 2017
Coronin-1B	Q9BR76		peptide-Glu375+Ala-peptide	N	MS	Ala	Ala	Leu	Glu	Ala	Glu	Glu	Trp	Vidmar et al., 2017
Coronin-1B	Q9BR76		peptide-Glu459+Leu-peptide	N	MS	Val	Met	Gln	Glu	Leu	Arg	Ala	Leu	Vidmar et al., 2017
Coronin-1B	Q9BR76		peptide-Glu469+Gln-peptide	N	MS	Leu	Val	Lys	Glu	Gln	Gly	Asp	Arg	Vidmar et al., 2017
Coronin-1C	Q9ULV4		peptide-Glu379+Gly-peptide	N	MS	Glu	Trp	Phe	Glu	Gly	Lys	Asn	Ala	Vidmar et al., 2017
Coronin-1C	Q9ULV4		peptide-Glu447+Ile-peptide	N	MS	Ile	Leu	Lys	Glu	Ile	Lys	Ser	Ile	Vidmar et al., 2017
creatine kinase B-type	P12277	156-172	LAVE+ALSSLDGDLAGR	N	MS	Leu	Ala	Val	Glu	Ala	Leu	Ser	Ser	Schilling & Overall, 2008
creatine kinase B-type	P12277	96-130	peptide-Glu105+His-peptide	N	MS	Pro	Ser	Asp	Glu	His	Lys	Thr	Asp	Schilling & Overall, 2008
creatine kinase B-type	P12277	341-358	LGFSEVE+LVQMVVDGVK	N	MS	Ser	Glu	Val	Glu	Leu	Val	Gln	Met	Schilling & Overall, 2008
creatine kinase B-type	P12277	182-209	peptide-Glu183+Gln-peptide	N	MS	-	-	-	Glu	Gln	Gln	Gln	Leu	Schilling & Overall, 2008
creatine kinase B-type	P12277	45-96	peptide-Glu83+Val-peptide	N	MS	Glu	Ser	Tyr	Glu	Val	Phe	Lys	Asp	Schilling & Overall, 2008
creatine kinase B-type	P12277	2-381	peptide-Glu37+Leu-peptide	N	MS	Leu	Thr	Pro	Glu	Leu	Tyr	Ala	Glu	Schilling & Overall, 2008
creatine kinase B-type	P12277	2-381	peptide-Glu181+Ala-peptide	N	MS	Ser	Met	Thr	Glu	Ala	Glu	Gln	Gln	Schilling & Overall, 2008
Creatine kinase B-type	P12277		peptide-Glu368+Gln-peptide	N	MS	Gln	Arg	Leu	Glu	Gln	Gly	Gln	Ala	Vidmar et al., 2017
creatine kinase M-type	P06732	182-209	peptide-Glu183+Gln-peptide	N	MS	-	-	-	Glu	Gln	Gln	Gln	Leu	Schilling & Overall, 2008
CSDA protein variant	Q59EB5	83-102	GAE+AANVTGPDGVPVEGSR	N	MS	-	Gly	Ala	Glu	Ala	Ala	Asn	Val	Schilling & Overall, 2008
CTP synthase 1	P17812	1-591	peptide-Glu356+Ala-peptide	N	MS	Arg	Tyr	His	Glu	Ala	Trp	Gln	Lys	Schilling & Overall, 2008
CTP synthase 1	P17812	1-591	peptide-Glu259+Gln-peptide	N	MS	Leu	Leu	Glu	Glu	Gln	Gly	Val	Val	Schilling & Overall, 2008
Cullin-associated NEDD8-dissociated protein 1	Q86VP6		peptide-Glu1213+Ser-peptide	N	MS	Ala	Ile	Phe	Glu	Ser	Ile	Gln	Lys	Vidmar et al., 2017
Cyclic AMP-responsive element-binding protein 1	P16220		peptide-Glu287+Val-peptide	N	MS	Arg	Lys	Arg	Glu	Val	Arg	Leu	Met	Vidmar et al., 2017
Cyclin-dependent kinase 1	P06493		peptide-Glu38+Ser-peptide	N	MS	Ile	Arg	Leu	Glu	Ser	Glu	Glu	Glu	Vidmar et al., 2017
cystatin-B	P04080	1-24	peptide-Glu15+Thr-peptide	N	MS	Ala	Thr	Ala	Glu	Thr	Gln	His	Ile	Schilling & Overall, 2008
cystatin-B	P04080	68-89	peptide-Glu76+Asn-peptide	N	MS	Leu	Pro	His	Glu	Asn	Lys	Pro	Leu	Schilling & Overall, 2008
Cystatin-C	P01034		peptide-Glu47+Gly-peptide	N	MS	Val	Glu	Glu	Glu	Gly	Val	Arg	Arg	Vidmar et al., 2017
Cystatin-SA	P09228		peptide-Gln121+Ile-peptide	N	MS	Cys	Ser	Phe	Gln	Ile	Tyr	Glu	Val	Vidmar et al., 2017
Cystatin-SN	P01037		peptide-Glu121+Ile-peptide	N	MS	Cys	Ser	Phe	Glu	Ile	Tyr	Glu	Val	Vidmar et al., 2017
Cysteine and glycine-rich protein 1	P21291		peptide-Gly183+Gln-peptide	N	MS	Phe	Gly	Phe	Gly	Gln	Gly	Ala	Gly	Vidmar et al., 2017
cysteine protease precursor	Q2FZL3	37-393	peptide-Glu44+Ile-peptide	P		Lys	Gln	Leu	Glu	Ile	Asn	Val	Lys	Massimi et al., 2002	17980
cysteine protease precursor	Q2FZL3	37-393	peptide-Glu213+Asn-peptide	P		Lys	Val	Glu	Glu	Asn	Glu	Ala	Ile	Massimi et al., 2002	17981
cysteine protease precursor	Q2FZL3	37-393	peptide-Glu219+Asp-peptide	P		Ala	Ile	Gln	Glu	Asp	Gln	Val	Gln	Massimi et al., 2002	17982
Cysteine--tRNA ligase, cytoplasmic	P49589		peptide-Glu633+Gly-peptide	N	MS	Glu	Asp	His	Glu	Gly	Leu	Pro	Thr	Vidmar et al., 2017
Cysteine--tRNA ligase, cytoplasmic	P49589		peptide-Glu715+Leu-peptide	N	MS	Glu	Gly	Lys	Glu	Leu	Ser	Lys	Gly	Vidmar et al., 2017
Cysteine--tRNA ligase, cytoplasmic	P49589		peptide-Glu596+Gly-peptide	N	MS	Glu	Phe	Arg	Glu	Gly	Val	Arg	Lys	Vidmar et al., 2017
Cysteine--tRNA ligase, cytoplasmic	P49589		peptide-Glu609+Ile-peptide	N	MS	Lys	Val	Pro	Glu	Ile	Leu	Gln	Leu	Vidmar et al., 2017
Cysteine-rich PDZ-binding protein	Q9P021		peptide-Glu7+Lys-peptide	N	MS	Glu	Lys	Cys	Glu	Lys	Lys	Leu	Gly	Vidmar et al., 2017
Cytidine deaminase	P32320		peptide-Glu77+Gly-peptide	N	MS	Ala	Val	Ser	Glu	Gly	Tyr	Lys	Asp	Vidmar et al., 2017
Cytidine deaminase	P32320		peptide-Glu131+Leu-peptide	N	MS	Thr	Val	Gln	Glu	Leu	Leu	Pro	Ser	Vidmar et al., 2017
cytidylate kinase	P0A6I0	1-227	peptide-Glu27+Ala-peptide	N	MS	Ala	Met	Ala	Glu	Ala	Leu	Gln	Trp	Timmer et al., 2009
Cytochrome b reductase 1	Q53TN4		peptide-Glu267+Val-peptide	N	MS	Leu	Asn	Ser	Glu	Val	Ala	Ala	Arg	Vidmar et al., 2017
cytochrome b-c1 complex subunit 1, mitochondrial precursor	P31930	228-248	MVLAAAGGVE+HQQLLDLAQK	N	MS	Gly	Gly	Val	Glu	His	Gln	Gln	Leu	Schilling & Overall, 2008
Cytochrome b-c1 complex subunit Rieske, mitochondrial	P47985		peptide-Tyr78+Ser-peptide	N	MS	Ser	Val	Cys	Tyr	Ser	His	Thr	Asp	Vidmar et al., 2017
Cytochrome b5	P00167		peptide-Glu53+Gln-peptide	N	MS	Val	Leu	Arg	Glu	Gln	Ala	Gly	Gly	Vidmar et al., 2017
Cytochrome b5 type B	O43169		peptide-Glu64+Gln-peptide	N	MS	Val	Leu	Leu	Glu	Gln	Ala	Gly	Val	Vidmar et al., 2017
Cytochrome b5 type B	O43169		peptide-Glu17+Thr-peptide	N	MS	Gln	Glu	Val	Glu	Thr	Ser	Val	Thr	Vidmar et al., 2017
cytochrome C	P00038	1-108	peptide-Glu9+Lys-peptide	N		Gly	Asp	Pro	Glu	Lys	Gly	Lys	Lys	Inoue et al., 1985
cytochrome C	P00038	1-108	peptide-Glu26+Ser-peptide	N		His	Thr	Ile	Glu	Ser	Gly	Gly	Lys	Inoue et al., 1985
cytochrome C	P00038	1-108	peptide-Glu67+Thr-peptide	N		Trp	Asn	Lys	Glu	Thr	Leu	Phe	Glu	Inoue et al., 1985
cytochrome C	P00038	1-108	peptide-Glu71+Tyr-peptide	N		Thr	Leu	Phe	Glu	Tyr	Leu	Glu	Asn	Inoue et al., 1985
cytochrome C	P00038	1-108	peptide-Glu95+Arg-peptide	N		Lys	Pro	Gln	Glu	Arg	Ala	Asp	Leu	Inoue et al., 1985
cytochrome C	P00038	1-108	peptide-Glu104+Gln-peptide	N		Ala	Tyr	Ile	Glu	Gln	Ala	Ser	Lys	Inoue et al., 1985
Cytochrome c	P99999		peptide-Glu91+Arg-peptide	N	MS	Lys	Lys	Glu	Glu	Arg	Ala	Asp	Leu	Vidmar et al., 2017
cytochrome C oxidase polypeptide VIa-liver, mitochondrial precursor	P12074	60-78	SHHGEHERPE+FIAYPHLR	N	MS	Glu	Arg	Pro	Glu	Phe	Ile	Ala	Tyr	Schilling & Overall, 2008
Cytochrome c oxidase subunit 4 isoform 1, mitochondrial	P13073		peptide-Glu31+Asp-peptide	N	MS	Val	Lys	Ser	Glu	Asp	Phe	Ser	Leu	Vidmar et al., 2017
cytochrome C oxidase subunit 4 isoform 1, mitochondrial precursor	P13073	23-169	peptide-Glu64+Lys-peptide	N	MS	Ala	Leu	Lys	Glu	Lys	Glu	Lys	Ala	Schilling & Overall, 2008
cytochrome C oxidase subunit 5A, mitochondrial precursor	P20674	120-150	peptide-Glu136+Leu-peptide	N	MS	Thr	Leu	Asn	Glu	Leu	Gly	Ile	Ser	Schilling & Overall, 2008
Cytochrome c oxidase subunit 5B, mitochondrial	P10606		peptide-Met31+Ala-peptide	N	MS	Met	Arg	Ser	Met	Ala	Ser	Gly	Gly	Vidmar et al., 2017
cytochrome C-551	P00122	1-78	peptide-Glu32+Asp-peptide	N		Asn	Ala	Pro	Glu	Asp	Trp	Ala	Asp	Ambler et al., 1993
cytochrome C-551	P00122	1-78	peptide-Glu43+Leu-peptide	N		Ser	Val	Asp	Glu	Leu	Val	Glu	Ser	Ambler et al., 1993
cytochrome C-551	P00122	1-78	peptide-Glu46+Ser-peptide	N		Glu	Leu	Val	Glu	Ser	Thr	Leu	Ala	Ambler et al., 1993
cytochrome C-551	P00122	1-78	peptide-Glu65+Asp-peptide	N		Ala	Asp	Arg	Glu	Asp	Leu	Val	Lys	Ambler et al., 1993
cytochrome C-554(548)	P00105	1-83	peptide-Glu8+Asp-peptide	N		Ala	Ala	Gly	Glu	Asp	Lys	Ile	Gly	Ambler et al., 1987
cytochrome C-554(548)	P00105	1-83	peptide-Glu41+Ser-peptide	N		Thr	Tyr	Leu	Glu	Ser	Ser	Ile	Lys	Ambler et al., 1987
cytochrome C-554(548)	P00105	1-83	peptide-Asp49+Gly-peptide	N		Ala	Tyr	Arg	Asp	Gly	Gln	Arg	Lys	Ambler et al., 1987
Cytoplasmic aconitate hydratase	P21399		peptide-Glu360+Leu-peptide	N	MS	Gln	Val	Val	Glu	Leu	Asp	Leu	Lys	Vidmar et al., 2017
Cytoplasmic dynein 1 intermediate chain 2	Q13409		peptide-Glu610+Trp-peptide	N	MS	Arg	Asn	Asp	Glu	Trp	Ala	Arg	Phe	Vidmar et al., 2017
Cytoplasmic dynein 1 intermediate chain 2	Q13409		peptide-Glu10+Leu-peptide	N	MS	Leu	Lys	Ala	Glu	Leu	Glu	Arg	Lys	Vidmar et al., 2017
Cytoplasmic dynein 1 intermediate chain 2	Q13409		peptide-Glu620+Ile-peptide	N	MS	Thr	Leu	Ala	Glu	Ile	Asn	Ala	Asn	Vidmar et al., 2017
Cytoplasmic dynein 1 intermediate chain 2	Q13409		peptide-Glu12+Arg-peptide	N	MS	Ala	Glu	Leu	Glu	Arg	Lys	Lys	Gln	Vidmar et al., 2017
Cytoskeleton-associated protein 4	Q07065		peptide-Glu210+Ile-peptide	N	MS	Leu	Gln	Asn	Glu	Ile	Leu	Lys	Asp	Vidmar et al., 2017
Cytoskeleton-associated protein 4	Q07065		peptide-Glu488+Leu-peptide	N	MS	Asp	Val	Glu	Glu	Leu	Lys	Arg	Ser	Vidmar et al., 2017
Cytoskeleton-associated protein 4	Q07065		peptide-Glu295+Ile-peptide	N	MS	Ala	Val	Lys	Glu	Ile	Gln	Thr	Ser	Vidmar et al., 2017
Cytoskeleton-associated protein 4	Q07065		peptide-Glu278+Ser-peptide	N	MS	Ser	Leu	Glu	Glu	Ser	Glu	Gly	Asn	Vidmar et al., 2017
Cytoskeleton-associated protein 4	Q07065		peptide-Glu445+Gln-peptide	N	MS	Gln	Glu	His	Glu	Gln	Arg	Leu	Ala	Vidmar et al., 2017
Cytoskeleton-associated protein 4	Q07065		peptide-Glu400+Ala-peptide	N	MS	Glu	Ala	Phe	Glu	Ala	Leu	Gln	Gln	Vidmar et al., 2017
Cytoskeleton-associated protein 4	Q07065		peptide-Glu361+Ser-peptide	N	MS	Arg	Ser	Glu	Glu	Ser	Val	Ser	Arg	Vidmar et al., 2017
Cytoskeleton-associated protein 4	Q07065		peptide-Glu234+Asn-peptide	N	MS	Thr	Ser	Leu	Glu	Asn	Thr	Val	Glu	Vidmar et al., 2017
Cytoskeleton-associated protein 4	Q07065		peptide-Glu456+Gly-peptide	N	MS	Gly	Arg	Leu	Glu	Gly	Leu	Gly	Ser	Vidmar et al., 2017
Cytoskeleton-associated protein 4	Q07065		peptide-Glu318+Ser-peptide	N	MS	Gln	Thr	Met	Glu	Ser	Asp	Ile	Tyr	Vidmar et al., 2017
Cytoskeleton-associated protein 4	Q07065		peptide-Glu376+Leu-peptide	N	MS	Leu	Glu	Glu	Glu	Leu	Arg	Gln	Leu	Vidmar et al., 2017
Cytoskeleton-associated protein 4	Q07065		peptide-Glu308+Ala-peptide	N	MS	Trp	Asp	Met	Glu	Ala	Leu	Arg	Ser	Vidmar et al., 2017
Cytoskeleton-associated protein 4	Q07065		peptide-Glu202+Val-peptide	N	MS	Arg	Ile	Ser	Glu	Val	Leu	Gln	Lys	Vidmar et al., 2017
Cytoskeleton-associated protein 4	Q07065		peptide-Glu443+His-peptide	N	MS	Lys	Ser	Gln	Glu	His	Glu	Gln	Arg	Vidmar et al., 2017
cytosol alanyl aminopeptidase	P55786	882-899	TIQQCCE+NILLNAAWLK	N	MS	Gln	Cys	Cys	Glu	Asn	Ile	Leu	Leu	Schilling & Overall, 2008
cytosol alanyl aminopeptidase	P55786	794-821	peptide-Glu803+Val-peptide	N	MS	Leu	Ser	Glu	Glu	Val	Arg	Pro	Gln	Schilling & Overall, 2008
cytosol alanyl aminopeptidase	P55786	1-919	peptide-Glu565+Met-peptide	N	MS	Asp	Lys	Pro	Glu	Met	Asn	Val	Val	Schilling & Overall, 2008
Cytosolic acyl coenzyme A thioester hydrolase	O00154		peptide-Glu338+Gly-peptide	N	MS	Leu	Ser	Gln	Glu	Gly	Arg	Ser	Leu	Vidmar et al., 2017
Cytosolic acyl coenzyme A thioester hydrolase	O00154		peptide-Glu175+Val-peptide	N	MS	Lys	Val	Leu	Glu	Val	Pro	Pro	Val	Vidmar et al., 2017
Cytosolic non-specific dipeptidase	Q96KP4		peptide-Glu46+Val-peptide	N	MS	Arg	Met	Met	Glu	Val	Ala	Ala	Ala	Vidmar et al., 2017
D-3-phosphoglycerate dehydrogenase	O43175	294-308	CGEE+IAVQFVDMVK	N	MS	Cys	Gly	Glu	Glu	Ile	Ala	Val	Gln	Schilling & Overall, 2008
D-3-phosphoglycerate dehydrogenase	O43175	270-289	ALVDHE+NVISCPHLGASTK	N	MS	Val	Asp	His	Glu	Asn	Val	Ile	Ser	Schilling & Overall, 2008
D-3-phosphoglycerate dehydrogenase	O43175	2-533	peptide-Glu68+Lys-peptide	N	MS	Asn	Ala	Ala	Glu	Lys	Leu	Gln	Val	Schilling & Overall, 2008
D-dopachrome decarboxylase	P30046	1-21	PFLE+LDTNLPANRVPAGLEK	N	MS	Pro	Phe	Leu	Glu	Leu	Asp	Thr	Asn	Schilling & Overall, 2008
D-dopachrome decarboxylase-like protein	A6NHG4	1-21	PFLE+LDTNLPANRVPAGLEK	N	MS	Pro	Phe	Leu	Glu	Leu	Asp	Thr	Asn	Schilling & Overall, 2008
D-tagatose-1,6-bisphosphate aldolase subunit gatY	P0C8J6	1-284	peptide-Glu149+Ala-peptide	N	MS	Gln	Val	Asn	Glu	Ala	Asp	Ala	Leu	Timmer et al., 2009
D-tyrosyl-tRNA(Tyr) deacylase 1	Q8TEA8		peptide-Glu144+Leu-peptide	N	MS	Val	Thr	Ile	Glu	Leu	Glu	Ser	Pro	Vidmar et al., 2017
D-tyrosyl-tRNA(Tyr) deacylase 1	Q8TEA8		peptide-Glu171+Lys-peptide	N	MS	Gln	Arg	Lys	Glu	Lys	Thr	Arg	Ala	Vidmar et al., 2017
D-tyrosyl-tRNA(Tyr) deacylase 1	Q8TEA8		peptide-Glu191+Asp-peptide	N	MS	Pro	Arg	Lys	Glu	Asp	Arg	Ser	Ala	Vidmar et al., 2017
DDX10 protein	Q86VR6	410-424	EDGE+ALLILLPSEK	N	MS	Glu	Asp	Gly	Glu	Ala	Leu	Leu	Ile	Schilling & Overall, 2008
DEAD	Q59EC7	420-434	EDGE+ALLILLPSEK	N	MS	Glu	Asp	Gly	Glu	Ala	Leu	Leu	Ile	Schilling & Overall, 2008
Density-regulated protein	O43583		peptide-Glu180+Lys-peptide	N	MS	Val	Ile	Gln	Glu	Lys	Trp	Pro	Glu	Vidmar et al., 2017
Deoxycytidylate deaminase	P32321		peptide-Glu45+Asn-peptide	N	MS	Val	Asn	Ser	Glu	Asn	Lys	Ile	Val	Vidmar et al., 2017
Desmoglein-2	Q14126		peptide-Glu909+Arg-peptide	N	MS	Ile	Val	Thr	Glu	Arg	Ser	Val	Ser	Vidmar et al., 2017
Desmoglein-2	Q14126		peptide-Glu965+Arg-peptide	N	MS	Ile	Val	Thr	Glu	Arg	Val	Tyr	Ala	Vidmar et al., 2017
desmoplakin isoform DP2	P15924-2	1-2272	LLE+AQACTGGIIHPTTGQK	N	MS	-	Leu	Leu	Glu	Ala	Gln	Ala	Cys	Schilling & Overall, 2008
Destrin	P60981		peptide-Glu134+Cys-peptide	N	MS	Ile	Lys	His	Glu	Cys	Gln	Ala	Asn	Vidmar et al., 2017
Diablo homolog, mitochondrial	Q9NR28		peptide-Glu215+Leu-peptide	N	MS	Gln	Ile	Glu	Glu	Leu	Arg	Gln	Lys	Vidmar et al., 2017
Dihydrolipoyl dehydrogenase, mitochondrial	P09622		peptide-Glu398+Val-peptide	N	MS	Thr	His	Pro	Glu	Val	Ala	Trp	Val	Vidmar et al., 2017
Dihydrolipoyl dehydrogenase, mitochondrial	P09622		peptide-Glu496+Ala-peptide	N	MS	Ala	Phe	Arg	Glu	Ala	Asn	Leu	Ala	Vidmar et al., 2017
dihydrolipoyl dehydrogenase, mitochondrial precursor	P09622	36-509	peptide-Glu71+Lys-peptide	N	MS	Val	Cys	Ile	Glu	Lys	Asn	Glu	Thr	Schilling & Overall, 2008
dihydrolipoyl dehydrogenase, mitochondrial precursor	P09622	36-509	peptide-Glu492+Ala-peptide	N	MS	Thr	Leu	Ser	Glu	Ala	Phe	Arg	Glu	Schilling & Overall, 2008
dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex	P06959	2-630	peptide-Glu315+Gly-peptide	N	MS	Ala	Lys	Ala	Glu	Gly	Lys	Ser	Glu	Timmer et al., 2009
dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial	P10515	87-647	peptide-Glu79+Lys-peptide	N	MS	Ala	Arg	Trp	Glu	Lys	Lys	Glu	Gly	Schilling & Overall, 2008
dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex	P0AFG6	2-405	peptide-Glu157+Ser-peptide	N	MS	Pro	Ala	Lys	Glu	Ser	Ala	Pro	Ala	Timmer et al., 2009
Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial	P36957		peptide-Lys67+Asp-peptide	N	MS	Ala	Val	Cys	Lys	Asp	Asp	Leu	Val	Vidmar et al., 2017
Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial	P36957		peptide-Glu105+Ile-peptide	N	MS	Val	Val	Cys	Glu	Ile	Glu	Thr	Asp	Vidmar et al., 2017
Dipeptidyl peptidase 1	P53634		peptide-Glu363+Leu-peptide	N	MS	Met	Lys	Leu	Glu	Leu	Val	His	His	Vidmar et al., 2017
Dipeptidyl peptidase 1	P53634		peptide-Glu375+Val-peptide	N	MS	Val	Ala	Phe	Glu	Val	Tyr	Asp	Asp	Vidmar et al., 2017
Dipeptidyl peptidase 3	Q9NY33		peptide-Glu213+Val-peptide	N	MS	Pro	Tyr	Tyr	Glu	Val	Arg	Leu	Ala	Vidmar et al., 2017
DJ-1 putative peptidase	Q99497	12-27	GAEEME+TVIPVDVMR	N	MS	Glu	Glu	Met	Glu	Thr	Val	Ile	Pro	Schilling & Overall, 2008
DJ-1 putative peptidase	Q99497	1-189	peptide-Glu16+Met-peptide	N	MS	Gly	Ala	Glu	Glu	Met	Glu	Thr	Val	Schilling & Overall, 2008
DJ-1 putative peptidase	Q99497	1-189	peptide-Asp49+Val-peptide	N	MS	Cys	Ser	Arg	Asp	Val	Val	Ile	Cys	Schilling & Overall, 2008
DJ-1 putative peptidase	Q99497	1-189	peptide-Glu59+Asp-peptide	N	MS	Ala	Ser	Leu	Glu	Asp	Ala	Lys	Lys	Schilling & Overall, 2008
DNA (cytosine-5)-methyltransferase 1	P26358		peptide-Glu211+Arg-peptide	N	MS	Thr	Ser	Arg	Glu	Arg	Val	Ala	Arg	Vidmar et al., 2017
DNA (cytosine-5)-methyltransferase 1	P26358		peptide-Glu191+Ser-peptide	N	MS	Lys	Ser	Asp	Glu	Ser	Ile	Lys	Glu	Vidmar et al., 2017
DNA (cytosine-5)-methyltransferase 1	P26358		peptide-Glu242+Lys-peptide	N	MS	Glu	Lys	Glu	Glu	Lys	Arg	Leu	Arg	Vidmar et al., 2017
DNA damage-binding protein 1	Q16531		peptide-Glu1095+Ser-peptide	N	MS	Asp	Leu	Ile	Glu	Ser	Phe	Leu	Asp	Vidmar et al., 2017
DNA damage-binding protein 1	Q16531		peptide-Glu1107+Val-peptide	N	MS	Lys	Met	Gln	Glu	Val	Val	Ala	Asn	Vidmar et al., 2017
DNA damage-binding protein 1	Q16531		peptide-Glu1123+Ala-peptide	N	MS	Met	Lys	Arg	Glu	Ala	Thr	Ala	Asp	Vidmar et al., 2017
DNA fragmentation factor subunit alpha	O00273		peptide-Glu219+Val-peptide	N	MS	Phe	Gly	Glu	Glu	Val	Asp	Ala	Val	Vidmar et al., 2017
dNA gyrase subunit A	P0AES4	1-875	peptide-Glu16+Leu-peptide	N	MS	Ile	Glu	Glu	Glu	Leu	Lys	Ser	Ser	Timmer et al., 2009
DNA ligase	Q50566	1-561	peptide-Glu299+Gly-peptide	N		Tyr	Ile	Val	Glu	Gly	Glu	Ile	Ile	Sriskanda et al., 2000
DNA ligase 1	P18858	1-919	peptide-Glu204+Val-peptide	N	MS	Ser	Glu	Pro	Glu	Val	Ala	Thr	Lys	Schilling & Overall, 2008
DNA replication licensing factor MCM3	P25205	194-215	peptide-Glu206+Lys-peptide	N	MS	Glu	Met	Pro	Glu	Lys	Ala	Pro	Ala	Schilling & Overall, 2008
DNA topoisomerase 1	P11387	1-765	peptide-Glu267+Tyr-peptide	N	MS	Leu	Asp	His	Glu	Tyr	Thr	Thr	Lys	Schilling & Overall, 2008
DNA-(apurinic or apyrimidinic site) lyase	P27695		peptide-Glu217+Ile-peptide	N	MS	Ala	His	Glu	Glu	Ile	Asp	Leu	Arg	Vidmar et al., 2017
DNA-(apurinic or apyrimidinic site) lyase	P27695		peptide-Glu101+Asn-peptide	N	MS	Lys	Cys	Ser	Glu	Asn	Lys	Leu	Pro	Vidmar et al., 2017
dNA-binding protein H-NS	P0ACF8	2-137	peptide-Glu63+Met-peptide	N	MS	Gln	Tyr	Arg	Glu	Met	Leu	Ile	Ala	Timmer et al., 2009
dNA-binding protein H-NS	P0ACF8	2-137	peptide-Glu44+Ser-peptide	N	MS	Arg	Glu	Glu	Glu	Ser	Ala	Ala	Ala	Timmer et al., 2009
dNA-binding protein H-NS	P0ACF8	2-137	peptide-Glu105+Thr-peptide	N	MS	Glu	Asn	Gly	Glu	Thr	Lys	Thr	Trp	Timmer et al., 2009
dNA-binding protein H-NS	P0ACF8	2-137	peptide-Glu74+Leu-peptide	N	MS	Asp	Pro	Asn	Glu	Leu	Leu	Asn	Ser	Timmer et al., 2009
dNA-binding protein HU-alpha	P0ACF0	1-90	peptide-Glu34+Ser-peptide	N	MS	Ala	Ile	Thr	Glu	Ser	Leu	Lys	Glu	Timmer et al., 2009
dNA-binding protein HU-alpha	P0ACF0	1-90	peptide-Glu68+Ile-peptide	N	MS	Thr	Gly	Lys	Glu	Ile	Lys	Ile	Ala	Timmer et al., 2009
dNA-binding protein HU-alpha	P0ACF0	1-90	peptide-Glu38+Gly-peptide	N	MS	Ser	Leu	Lys	Glu	Gly	Asp	Ala	Val	Timmer et al., 2009
dNA-binding protein HU-beta	P0ACF4	1-90	peptide-Glu68+Ile-peptide	N	MS	Thr	Gly	Lys	Glu	Ile	Thr	Ile	Ala	Timmer et al., 2009
dNA-binding protein stpA	P0ACG1	1-134	peptide-Glu63+Leu-peptide	N	MS	Thr	Trp	Leu	Glu	Leu	Met	Lys	Ala	Timmer et al., 2009
DNA-dependent protein kinase catalytic subunit	P78527		peptide-Phe2813+Ser-peptide	N	MS	Ser	Ser	Leu	Phe	Ser	Gly	Ile	Leu	Vidmar et al., 2017
DNA-directed RNA polymerase I subunit RPA34	O15446		peptide-Glu429+Arg-peptide	N	MS	Lys	Lys	Lys	Glu	Arg	Gly	His	Thr	Vidmar et al., 2017
dNA-directed RNA polymerase subunit beta	P0A8V2	1-1342	peptide-Glu1197+Leu-peptide	N	MS	Glu	Ile	Lys	Glu	Leu	Leu	Lys	Leu	Timmer et al., 2009
DNA-repair protein XRCC1	P18887	1-633	peptide-Glu302+Gly-peptide	N	MS	Pro	Arg	Gly	Glu	Gly	Thr	Glu	Pro	Schilling & Overall, 2008
DnaJ homolog subfamily A member 2	O60884		peptide-Glu375+Phe-peptide	N	MS	Glu	Leu	Gln	Glu	Phe	Asp	Ser	Thr	Vidmar et al., 2017
DNAJ homolog subfamily B member 11 precursor	Q9UBS4	217-240	peptide-Glu227+Gly-peptide	N	MS	Phe	Ile	Gly	Glu	Gly	Glu	Pro	His	Schilling & Overall, 2008
DnaJ homolog subfamily C member 5	Q9H3Z4		peptide-Glu180+Thr-peptide	N	MS	Ser	Ala	Thr	Glu	Thr	Thr	Gln	Leu	Vidmar et al., 2017
DnaJ homolog subfamily C member 5	Q9H3Z4		peptide-Glu156+Ala-peptide	N	MS	Glu	Asp	Leu	Glu	Ala	Gln	Leu	Gln	Vidmar et al., 2017
DNAJ homolog subfamily C member 7	Q99615	446-470	peptide-Glu456+Gly-peptide	N	MS	Leu	Asp	Glu	Glu	Gly	Met	Asn	Met	Schilling & Overall, 2008
DnaJ homolog subfamily C member 8	O75937		peptide-Glu235+Lys-peptide	N	MS	Gly	Lys	Lys	Glu	Lys	Lys	Asn	Arg	Vidmar et al., 2017
DnaJ homolog subfamily C member 8	O75937		peptide-Glu144+Gly-peptide	N	MS	Leu	Lys	Lys	Glu	Gly	Lys	Pro	Thr	Vidmar et al., 2017
DNAJ homolog subfamily C member 9	Q8WXX5	1-260	peptide-Glu181+Ser-peptide	N	MS	Phe	Val	Lys	Glu	Ser	Lys	Gln	Lys	Schilling & Overall, 2008
DNAJ homolog subfamily C member 9	Q8WXX5	1-260	peptide-Glu155+Glu-peptide	N	MS	Gln	Tyr	Thr	Glu	Glu	Pro	Arg	Ile	Schilling & Overall, 2008
DnaJ homolog subfamily C member 9	Q8WXX5		peptide-Glu206+Leu-peptide	N	MS	Ser	Arg	Lys	Glu	Leu	Gly	Leu	Asp	Vidmar et al., 2017
DnaJ homolog subfamily C member 9	Q8WXX5		peptide-Glu211+Gly-peptide	N	MS	Gly	Leu	Asp	Glu	Gly	Val	Asp	Ser	Vidmar et al., 2017
dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 precursor	P04843	24-607	peptide-Glu584+Asn-peptide	N	MS	Thr	Tyr	Ile	Glu	Asn	Glu	Lys	Leu	Schilling & Overall, 2008
Double-strand break repair protein MRE11	P49959		peptide-Glu506+Thr-peptide	N	MS	Arg	Phe	Arg	Glu	Thr	Arg	Gln	Lys	Vidmar et al., 2017
double-stranded RNA-specific adenosine deaminase	P55265	1-1226	peptide-Glu132+Leu-peptide	N		His	Phe	Gln	Glu	Leu	Ser	Ile	Tyr	Schwartz et al., 1999
double-stranded RNA-specific adenosine deaminase	P55265	1-1226	peptide-Glu361+Arg-peptide	N		Lys	Lys	Arg	Glu	Arg	Met	Gln	Ile	Schwartz et al., 1999
double-stranded RNA-specific adenosine deaminase	P55265	1-1226	peptide-Glu239+Asp-peptide	N		Ser	Val	Ser	Glu	Asp	Leu	Leu	Glu	Schwartz et al., 1999
Drebrin	Q16643		peptide-Glu298+Arg-peptide	N	MS	Lys	Gln	Gln	Glu	Arg	Val	Ala	Ser	Vidmar et al., 2017
Drebrin	Q16643		peptide-Glu266+Thr-peptide	N	MS	Glu	Glu	Glu	Glu	Thr	His	Met	Lys	Vidmar et al., 2017
Drebrin	Q16643		peptide-Glu568+Leu-peptide	N	MS	Ala	Leu	Glu	Glu	Leu	Glu	Gln	Glu	Vidmar et al., 2017
Drebrin-like protein	Q9UJU6		peptide-Glu145+Ser-peptide	N	MS	Phe	His	Lys	Glu	Ser	Gly	Arg	Phe	Vidmar et al., 2017
Drebrin-like protein	Q9UJU6		peptide-Glu265+Arg-peptide	N	MS	Lys	Gln	Lys	Glu	Arg	Ala	Met	Ser	Vidmar et al., 2017
drebrin-like protein variant	Q59FH4	1-358	peptide-Glu222+Thr-peptide	N	MS	Thr	Gln	Pro	Glu	Thr	His	Phe	Gly	Schilling & Overall, 2008
DSP variant protein	Q4LE79	2097-2116	LLE+AQACTGGIIHPTTGQK	N	MS	-	Leu	Leu	Glu	Ala	Gln	Ala	Cys	Schilling & Overall, 2008
Dual specificity mitogen-activated protein kinase kinase 2	P36507		peptide-Glu55+Ala-peptide	N	MS	Lys	Arg	Leu	Glu	Ala	Phe	Leu	Thr	Vidmar et al., 2017
Dynactin subunit 1, isoform 5	Q14203-5	1-1139	peptide-Glu1061+Lys-peptide	N	MS	Asp	Thr	Val	Glu	Lys	Leu	Lys	Asp	Schilling & Overall, 2008
dynactin subunit 2	Q13561	2-401	peptide-Glu341+Gln-peptide	N	MS	Gln	Leu	His	Glu	Gln	Ala	Met	Gln	Schilling & Overall, 2008
dynactin subunit 2	Q13561	2-401	peptide-Glu155+Lys-peptide	N	MS	Ser	His	Leu	Glu	Lys	Leu	Leu	Gly	Schilling & Overall, 2008
dynactin subunit 2	Q13561	2-401	peptide-Glu182+Ala-peptide	N	MS	Leu	Gln	Leu	Glu	Ala	Thr	Lys	Asn	Schilling & Overall, 2008
Dynactin subunit 2	Q13561		peptide-Glu214+Gln-peptide	N	MS	Ser	Arg	Pro	Glu	Gln	Asp	Lys	Phe	Vidmar et al., 2017
Dynactin subunit 2	Q13561		peptide-Glu328+Leu-peptide	N	MS	Thr	Leu	Pro	Glu	Leu	Val	Gln	Arg	Vidmar et al., 2017
Dynactin subunit 2	Q13561		peptide-Glu91+Gly-peptide	N	MS	Met	Leu	Gly	Glu	Gly	Leu	Gly	Val	Vidmar et al., 2017
Dynactin subunit 2	Q13561		peptide-Glu116+Val-peptide	N	MS	Leu	Thr	Thr	Glu	Val	Glu	Lys	Ile	Vidmar et al., 2017
Dynactin subunit 3	O75935		peptide-Glu176+Ala-peptide	N	MS	Cys	Gln	Leu	Glu	Ala	Ala	Thr	Gln	Vidmar et al., 2017
dynamin 2 isoform 4 variant	Q59G96	1-487	peptide-Glu297+Lys-peptide	N	MS	Leu	Ser	Leu	Glu	Lys	Glu	Val	Glu	Schilling & Overall, 2008
Dynein light chain 1, axonemal	Q4LDG9		peptide-Glu165+Ala-peptide	N	MS	Trp	Ile	Glu	Glu	Ala	Thr	Lys	Arg	Vidmar et al., 2017
E3 ubiquitin-protein ligase HUWE1	Q7Z6Z7		peptide-Glu2966+Gly-peptide	N	MS	Ser	Leu	Pro	Glu	Gly	Val	Asp	Pro	Vidmar et al., 2017
E3 ubiquitin-protein ligase NEDD4-like	Q96PU5		peptide-Glu310+Leu-peptide	N	MS	Leu	Ser	Glu	Glu	Leu	Ser	Arg	Arg	Vidmar et al., 2017
E3 ubiquitin-protein ligase RNF181	Q9P0P0		peptide-Glu60+Asn-peptide	N	MS	Thr	Val	Val	Glu	Asn	Leu	Pro	Arg	Vidmar et al., 2017
Early endosome antigen 1	Q15075		peptide-Glu655+Ala-peptide	N	MS	Leu	Ser	Ala	Glu	Ala	Ala	Lys	Thr	Vidmar et al., 2017
Early endosome antigen 1	Q15075		peptide-Glu682+Leu-peptide	N	MS	Lys	Gln	Gln	Glu	Leu	Asn	Lys	Ile	Vidmar et al., 2017
Early endosome antigen 1	Q15075		peptide-Glu632+Ser-peptide	N	MS	Gln	Leu	Asn	Glu	Ser	Lys	Glu	Lys	Vidmar et al., 2017
Early endosome antigen 1	Q15075		peptide-Glu492+Gln-peptide	N	MS	Gln	His	Gln	Glu	Gln	Gln	Ala	Leu	Vidmar et al., 2017
Early endosome antigen 1	Q15075		peptide-Glu589+Ser-peptide	N	MS	Asn	Gln	Ser	Glu	Ser	His	Lys	Gln	Vidmar et al., 2017
Early endosome antigen 1	Q15075		peptide-Glu415+Ile-peptide	N	MS	Leu	Gln	Ser	Glu	Ile	Asn	Gln	Leu	Vidmar et al., 2017
Early endosome antigen 1	Q15075		peptide-Glu512+Gln-peptide	N	MS	Asn	Asp	Leu	Glu	Gln	Val	Leu	Arg	Vidmar et al., 2017
Early endosome antigen 1	Q15075		peptide-Glu394+Phe-peptide	N	MS	Leu	Lys	Ala	Glu	Phe	Lys	Gln	Leu	Vidmar et al., 2017
Early endosome antigen 1	Q15075		peptide-Glu1236+Ala-peptide	N	MS	Glu	Glu	Asn	Glu	Ala	Lys	Leu	Thr	Vidmar et al., 2017
Early endosome antigen 1	Q15075		peptide-Glu1305+Ile-peptide	N	MS	Gly	Glu	Gly	Glu	Ile	Glu	Lys	Leu	Vidmar et al., 2017
Early endosome antigen 1	Q15075		peptide-Glu1026+Thr-peptide	N	MS	Lys	Ser	Gln	Glu	Thr	Phe	Lys	Gln	Vidmar et al., 2017
Early endosome antigen 1	Q15075		peptide-Glu203+Ala-peptide	N	MS	Leu	Asn	Lys	Glu	Ala	Thr	Val	Ile	Vidmar et al., 2017
Early endosome antigen 1	Q15075		peptide-Glu1266+Leu-peptide	N	MS	Arg	Val	Ser	Glu	Leu	Glu	Lys	Gln	Vidmar et al., 2017
Early endosome antigen 1	Q15075		peptide-Glu1174+Leu-peptide	N	MS	Gln	Lys	Leu	Glu	Leu	Gln	Gly	Lys	Vidmar et al., 2017
Early endosome antigen 1	Q15075		peptide-Glu1157+Ile-peptide	N	MS	Ser	Ile	Lys	Glu	Ile	Thr	Asn	Leu	Vidmar et al., 2017
Early endosome antigen 1	Q15075		peptide-Glu406+Gln-peptide	N	MS	Glu	Glu	Lys	Glu	Gln	His	Gly	Leu	Vidmar et al., 2017
Early endosome antigen 1	Q15075		peptide-Glu938+Gln-peptide	N	MS	Ser	Met	Gln	Glu	Gln	Leu	Ile	Gln	Vidmar et al., 2017
Early endosome antigen 1	Q15075		peptide-Glu478+Leu-peptide	N	MS	Asn	Ser	Thr	Glu	Leu	Gln	His	Gln	Vidmar et al., 2017
Early endosome antigen 1	Q15075		peptide-Glu112+Leu-peptide	N	MS	Leu	Lys	Lys	Glu	Leu	Glu	Lys	Tyr	Vidmar et al., 2017
Early endosome antigen 1	Q15075		peptide-Glu951+Lys-peptide	N	MS	Lys	Gln	Asn	Glu	Lys	Glu	Glu	Gln	Vidmar et al., 2017
Early endosome antigen 1	Q15075		peptide-Glu266+Ala-peptide	N	MS	Ala	Ser	Ser	Glu	Ala	Thr	Ile	Ser	Vidmar et al., 2017
Early endosome antigen 1	Q15075		peptide-Glu187+Ala-peptide	N	MS	Ser	Leu	Arg	Glu	Ala	Ala	Glu	Gln	Vidmar et al., 2017
Early endosome antigen 1	Q15075		peptide-Glu993+Asn-peptide	N	MS	Thr	Glu	Leu	Glu	Asn	Lys	Leu	Gln	Vidmar et al., 2017
Echinoderm microtubule-associated protein-like 4	Q9HC35		peptide-Glu874+Thr-peptide	N	MS	Pro	Gln	Asn	Glu	Thr	Val	Ala	Asp	Vidmar et al., 2017
Echinoderm microtubule-associated protein-like 4	Q9HC35		peptide-Glu105+Thr-peptide	N	MS	Ala	Gly	Lys	Glu	Thr	Leu	Ser	Ser	Vidmar et al., 2017
Echinoderm microtubule-associated protein-like 4	Q9HC35		peptide-Glu964+Gln-peptide	N	MS	Ile	Ser	Lys	Glu	Gln	Ala	Lys	Ala	Vidmar et al., 2017
EEF1A protein	Q14222	1-227	peptide-Asp168+Met-peptide	N	MS	Ala	Ile	Val	Asp	Met	Val	Pro	Ser	Schilling & Overall, 2008
EEF1A protein	Q14222	1-227	peptide-Glu35+Thr-peptide	N	MS	Gly	Arg	Val	Glu	Thr	Gly	Val	Leu	Schilling & Overall, 2008
EF-hand domain-containing protein D2	Q96C19		peptide-Glu224+Met-peptide	N	MS	Gln	Ala	Glu	Glu	Met	Lys	Gln	Arg	Vidmar et al., 2017
EF-hand domain-containing protein D2	Q96C19		peptide-Glu5+Leu-peptide	N	MS	Ala	Thr	Asp	Glu	Leu	Ala	Thr	Lys	Vidmar et al., 2017
EH domain-containing protein 1	Q9H4M9		peptide-Glu450+Ile-peptide	N	MS	Thr	Tyr	Asp	Glu	Ile	Phe	Tyr	Thr	Vidmar et al., 2017
EIF4G3 protein	Q504Z1	1-1305	peptide-Glu663+Lys-peptide	N	MS	Leu	Asp	Phe	Glu	Lys	Ala	Lys	Pro	Schilling & Overall, 2008
EIF5B protein	A0JLR8	284-314	peptide-Glu297+Lys-peptide	N	MS	Ala	Ser	Glu	Glu	Lys	Ala	Glu	Thr	Schilling & Overall, 2008
EIF5B protein	Q05CQ1	284-314	peptide-Glu297+Lys-peptide	N	MS	Ala	Ser	Glu	Glu	Lys	Ala	Glu	Thr	Schilling & Overall, 2008
ELAV-like protein 1	Q15717		peptide-Glu11+Asp-peptide	N	MS	His	Met	Ala	Glu	Asp	Cys	Arg	Gly	Vidmar et al., 2017
ELAV-like protein 1	Q15717		peptide-Glu35+Leu-peptide	N	MS	Thr	Gln	Asp	Glu	Leu	Arg	Ser	Leu	Vidmar et al., 2017
electron transfer flavoprotein subunit alpha, mitochondrial precursor	P13804	85-101	GLLPEE+LTPLILATQK	N	MS	Leu	Pro	Glu	Glu	Leu	Thr	Pro	Leu	Schilling & Overall, 2008
Electron transfer flavoprotein subunit beta	P38117		peptide-Glu97+Arg-peptide	N	MS	Ala	Glu	Ala	Glu	Arg	Leu	Gly	Pro	Vidmar et al., 2017
elongation factor 1-alpha 1	P68104	1-462	peptide-Asp403+Met-peptide	N	MS	Ala	Ile	Val	Asp	Met	Val	Pro	Gly	Schilling & Overall, 2008
elongation factor 1-alpha 1	P68104	1-462	peptide-Glu268+Thr-peptide	N	MS	Gly	Arg	Val	Glu	Thr	Gly	Val	Leu	Schilling & Overall, 2008
elongation factor 1-alpha 1	P68104	1-462	peptide-Glu413+Ser-peptide	N	MS	Met	Cys	Val	Glu	Ser	Phe	Ser	Asp	Schilling & Overall, 2008
elongation factor 1-alpha 1	P68104	1-462	peptide-Glu168+Glu-peptide	N	MS	Lys	Arg	Tyr	Glu	Glu	Ile	Val	Lys	Schilling & Overall, 2008
elongation factor 1-alpha 1	P68104	1-462	peptide-Glu169+Ile-peptide	N	MS	Arg	Tyr	Glu	Glu	Ile	Val	Lys	Glu	Schilling & Overall, 2008
elongation factor 1-alpha 2	Q05639	1-463	peptide-Glu403+Met-peptide	N	MS	Ala	Ile	Val	Glu	Met	Val	Pro	Gly	Schilling & Overall, 2008
elongation factor 1-alpha 2	Q05639	1-463	peptide-Glu268+Thr-peptide	N	MS	Gly	Arg	Val	Glu	Thr	Gly	Ile	Leu	Schilling & Overall, 2008
elongation factor 1-beta	P24534	22-54	peptide-Glu39+Ala-peptide	N	MS	Ala	Val	Phe	Glu	Ala	Val	Ser	Ser	Schilling & Overall, 2008
elongation factor 1-beta	P24534	2-225	peptide-Glu26+Gly-peptide	N	MS	Ser	Tyr	Ile	Glu	Gly	Tyr	Val	Pro	Schilling & Overall, 2008
Elongation factor 1-beta	P24534		peptide-Glu211+Asp-peptide	N	MS	Thr	Ala	Phe	Glu	Asp	Tyr	Val	Gln	Vidmar et al., 2017
Elongation factor 1-beta	P24534		peptide-Glu114+Ala-peptide	N	MS	Glu	Ser	Glu	Glu	Ala	Lys	Arg	Leu	Vidmar et al., 2017
Elongation factor 1-beta	P24534		peptide-Glu152+Thr-peptide	N	MS	Trp	Asp	Asp	Glu	Thr	Asp	Met	Ala	Vidmar et al., 2017
Elongation factor 1-beta	P24534		peptide-Glu194+Asp-peptide	N	MS	Cys	Val	Val	Glu	Asp	Asp	Lys	Val	Vidmar et al., 2017
Elongation factor 1-delta	P29692		peptide-Gly239+Ile-peptide	N	MS	Val	Gly	Tyr	Gly	Ile	Arg	Lys	Leu	Vidmar et al., 2017
Elongation factor 1-delta	P29692		peptide-Asp14+Lys-peptide	N	MS	Ile	Trp	Phe	Asp	Lys	Phe	Lys	Tyr	Vidmar et al., 2017
Elongation factor 1-delta	P29692		peptide-Glu55+Asn-peptide	N	MS	Arg	Ala	Arg	Glu	Asn	Ile	Gln	Lys	Vidmar et al., 2017
Elongation factor 1-delta	P29692		peptide-Glu9+Lys-peptide	N	MS	Leu	Ala	His	Glu	Lys	Ile	Trp	Phe	Vidmar et al., 2017
Elongation factor 1-delta	P29692		peptide-Glu40+Asn-peptide	N	MS	Ser	Arg	Gln	Glu	Asn	Gly	Ala	Ser	Vidmar et al., 2017
Elongation factor 1-delta	P29692		peptide-Glu250+Asp-peptide	N	MS	Cys	Val	Val	Glu	Asp	Asp	Lys	Val	Vidmar et al., 2017
Elongation factor 1-delta	P29692		peptide-Glu88+Val-peptide	N	MS	Ala	Ser	Leu	Glu	Val	Glu	Asn	Gln	Vidmar et al., 2017
Elongation factor 1-delta	P29692		peptide-Glu90+Asn-peptide	N	MS	Leu	Glu	Val	Glu	Asn	Gln	Ser	Leu	Vidmar et al., 2017
Elongation factor 1-delta	P29692		peptide-Glu79+Leu-peptide	N	MS	Asp	His	Gly	Glu	Leu	Val	Val	Arg	Vidmar et al., 2017
Elongation factor 1-delta	P29692		peptide-Glu27+Gln-peptide	N	MS	Arg	Phe	Tyr	Glu	Gln	Met	Asn	Gly	Vidmar et al., 2017
Elongation factor 1-delta	P29692		peptide-Glu268+His-peptide	N	MS	Lys	Phe	Glu	Glu	His	Val	Gln	Ser	Vidmar et al., 2017
Elongation factor 1-gamma	P26641		peptide-Glu11+Asn-peptide	N	MS	Thr	Tyr	Pro	Glu	Asn	Trp	Arg	Ala	Vidmar et al., 2017
Elongation factor 1-gamma	P26641		peptide-Glu234+Lys-peptide	N	MS	Pro	Arg	Lys	Glu	Lys	Gly	Ser	Arg	Vidmar et al., 2017
Elongation factor 1-gamma	P26641		peptide-Glu48+Phe-peptide	N	MS	Arg	Thr	Pro	Glu	Phe	Leu	Arg	Lys	Vidmar et al., 2017
Elongation factor 1-gamma	P26641		peptide-Glu395+Ser-peptide	N	MS	Val	Asp	Tyr	Glu	Ser	Tyr	Thr	Trp	Vidmar et al., 2017
Elongation factor 1-gamma	P26641		peptide-Glu420+Gly-peptide	N	MS	Phe	Ser	Trp	Glu	Gly	Ala	Phe	Gln	Vidmar et al., 2017
Elongation factor 1-gamma	P26641		peptide-Glu247+Arg-peptide	N	MS	Pro	Gln	Ala	Glu	Arg	Lys	Glu	Glu	Vidmar et al., 2017
Elongation factor 1-gamma	P26641		peptide-Glu211+Lys-peptide	N	MS	Lys	Leu	Cys	Glu	Lys	Met	Ala	Gln	Vidmar et al., 2017
Elongation factor 1-gamma	P26641		peptide-Glu251+Lys-peptide	N	MS	Arg	Lys	Glu	Glu	Lys	Lys	Ala	Ala	Vidmar et al., 2017
Elongation factor 1-gamma	P26641		peptide-Glu250+Glu-peptide	N	MS	Glu	Arg	Lys	Glu	Glu	Lys	Lys	Ala	Vidmar et al., 2017
elongation factor 2	P13639	785-801	AYLPVNE+SFGFTADLR	N	MS	Pro	Val	Asn	Glu	Ser	Phe	Gly	Phe	Schilling & Overall, 2008
elongation factor 2	P13639	667-688	peptide-Glu674+Ile-peptide	N	MS	Tyr	Leu	Asn	Glu	Ile	Lys	Asp	Ser	Schilling & Overall, 2008
elongation factor 2	P13639	633-647	YLAE+KYEWDVAEAR	N	MS	Tyr	Leu	Ala	Glu	Lys	Tyr	Glu	Trp	Schilling & Overall, 2008
elongation factor 2	P13639	767-785	GHVFEE+SQVAGTPMFVVK	N	MS	Val	Phe	Glu	Glu	Ser	Gln	Val	Ala	Schilling & Overall, 2008
elongation factor 2	P13639	2-858	peptide-Glu230+Met-peptide	N	MS	Gln	Phe	Ala	Glu	Met	Tyr	Val	Ala	Schilling & Overall, 2008
elongation factor 2	P13639	2-858	peptide-Glu166+Leu-peptide	N	MS	Ala	Leu	Leu	Glu	Leu	Gln	Leu	Glu	Schilling & Overall, 2008
elongation factor 2	P13639	2-858	peptide-Glu489+His-peptide	N	MS	Thr	Thr	Phe	Glu	His	Ala	His	Asn	Schilling & Overall, 2008
Elongation factor 2	P13639		peptide-Glu555+Ile-peptide	N	MS	Leu	His	Leu	Glu	Ile	Cys	Leu	Lys	Vidmar et al., 2017
Elongation factor 2	P13639		peptide-Glu748+Ile-peptide	N	MS	Tyr	Leu	Val	Glu	Ile	Gln	Cys	Pro	Vidmar et al., 2017
Elongation factor 2	P13639		peptide-Glu510+Ala-peptide	N	MS	Val	Ala	Val	Glu	Ala	Lys	Asn	Pro	Vidmar et al., 2017
Elongation factor 2	P13639		peptide-Glu317+Lys-peptide	N	MS	Lys	Leu	Ile	Glu	Lys	Leu	Asp	Ile	Vidmar et al., 2017
Elongation factor 2	P13639		peptide-Glu540+Ser-peptide	N	MS	Ile	Ile	Glu	Glu	Ser	Gly	Glu	His	Vidmar et al., 2017
Elongation factor 2	P13639		peptide-Glu149+Arg-peptide	N	MS	Ala	Ile	Ala	Glu	Arg	Ile	Lys	Pro	Vidmar et al., 2017
Elongation factor 2	P13639		peptide-Glu846+Gly-peptide	N	MS	Gly	Leu	Lys	Glu	Gly	Ile	Pro	Ala	Vidmar et al., 2017
Elongation factor 2	P13639		peptide-Ile848+Pro-peptide	N	MS	Lys	Glu	Gly	Ile	Pro	Ala	Leu	Asp	Vidmar et al., 2017
Elongation factor 2	P13639		peptide-Glu627+Leu-peptide	N	MS	Ala	Arg	Gln	Glu	Leu	Lys	Gln	Arg	Vidmar et al., 2017
elongation factor G	P0A6M8	2-704	peptide-Glu476+Phe-peptide	N	MS	Met	Lys	Arg	Glu	Phe	Asn	Val	Glu	Timmer et al., 2009
elongation factor Tu	P0A6N1	2-394	peptide-Glu191+Leu-peptide	N	MS	Lys	Ile	Leu	Glu	Leu	Ala	Gly	Phe	Timmer et al., 2009
Elongin-B	Q15370		peptide-Glu32+Gly-peptide	N	MS	Arg	Ile	Val	Glu	Gly	Ile	Leu	Lys	Vidmar et al., 2017
Elongin-C	Q15369		peptide-Glu34+His-peptide	N	MS	Val	Lys	Arg	Glu	His	Ala	Leu	Thr	Vidmar et al., 2017
Emerin	P50402		peptide-Glu97+Ser-peptide	N	MS	Tyr	Tyr	Glu	Glu	Ser	Tyr	Phe	Thr	Vidmar et al., 2017
endophilin-A2	Q99961	1-368	peptide-Glu90+Gly-peptide	N	MS	Pro	Gln	Ser	Glu	Gly	Leu	Leu	Gly	Schilling & Overall, 2008
Endophilin-B1	Q9Y371		peptide-Glu134+Leu-peptide	N	MS	Ala	Asp	Arg	Glu	Leu	Ile	Gln	Thr	Vidmar et al., 2017
Endophilin-B1	Q9Y371		peptide-Glu123+Thr-peptide	N	MS	Lys	Cys	Gly	Glu	Thr	Gln	Lys	Arg	Vidmar et al., 2017
Endophilin-B1	Q9Y371		peptide-Glu64+Val-peptide	N	MS	Lys	Gln	Thr	Glu	Val	Leu	Leu	Gln	Vidmar et al., 2017
Endoplasmic reticulum resident protein 29	P30040		peptide-Glu175+Ala-peptide	N	MS	Ser	Gly	Val	Glu	Ala	Arg	Gln	Ala	Vidmar et al., 2017
Endoplasmic reticulum resident protein 29	P30040		peptide-Glu240+Leu-peptide	N	MS	Lys	Lys	Glu	Glu	Leu	Gln	Lys	Ser	Vidmar et al., 2017
Endoplasmic reticulum resident protein 29	P30040		peptide-Glu220+Met-peptide	N	MS	Pro	Ala	Ser	Glu	Met	Thr	Arg	Ile	Vidmar et al., 2017
Endoplasmic reticulum resident protein 29	P30040		peptide-Glu90+Val-peptide	N	MS	Leu	Val	Ala	Glu	Val	Gly	Ile	Ser	Vidmar et al., 2017
endoplasmin	P14625	22-803	peptide-Glu173+Phe-peptide	N	MS	Gly	Thr	Ser	Glu	Phe	Leu	Asn	Lys	Schilling & Overall, 2008
Endoplasmin	P14625		peptide-Glu686+Ile-peptide	N	MS	Lys	Thr	Phe	Glu	Ile	Asn	Pro	Arg	Vidmar et al., 2017
Endoplasmin	P14625		peptide-Glu719+Thr-peptide	N	MS	Val	Leu	Phe	Glu	Thr	Ala	Thr	Leu	Vidmar et al., 2017
Endoplasmin	P14625		peptide-Glu614+Phe-peptide	N	MS	Val	Glu	Lys	Glu	Phe	Glu	Pro	Leu	Vidmar et al., 2017
Endoplasmin	P14625		peptide-Glu659+Arg-peptide	N	MS	Gly	Asn	Met	Glu	Arg	Ile	Met	Lys	Vidmar et al., 2017
Endoplasmin	P14625		peptide-Glu582+Phe-peptide	N	MS	Ala	Leu	Pro	Glu	Phe	Asp	Gly	Lys	Vidmar et al., 2017
Endoplasmin	P14625		peptide-Glu103+Leu-peptide	N	MS	Phe	Leu	Arg	Glu	Leu	Ile	Ser	Asn	Vidmar et al., 2017
Endoplasmin	P14625		peptide-Glu33+Asp-peptide	N	MS	Thr	Val	Glu	Glu	Asp	Leu	Gly	Lys	Vidmar et al., 2017
Endoplasmin	P14625		peptide-Glu533+Lys-peptide	N	MS	Arg	Met	Lys	Glu	Lys	Gln	Asp	Lys	Vidmar et al., 2017
Endoplasmin	P14625		peptide-Glu24+Val-peptide	N	MS	Ala	Asp	Asp	Glu	Val	Asp	Val	Asp	Vidmar et al., 2017
Endoplasmin	P14625		peptide-Glu81+Val-peptide	N	MS	Phe	Gln	Ala	Glu	Val	Asn	Arg	Met	Vidmar et al., 2017
Endoplasmin	P14625		peptide-Glu297+Ala-peptide	N	MS	Glu	Glu	Glu	Glu	Ala	Ala	Lys	Glu	Vidmar et al., 2017
Endoplasmin	P14625		peptide-Ala21+Asp-peptide	N	MS	Ser	Val	Arg	Ala	Asp	Asp	Glu	Val	Vidmar et al., 2017
Endoplasmin	P14625		peptide-Asp59+Gly-peptide	N	MS	Ile	Gln	Leu	Asp	Gly	Leu	Asn	Ala	Vidmar et al., 2017
Endoplasmin	P14625		peptide-Glu556+Arg-peptide	N	MS	Pro	Phe	Val	Glu	Arg	Leu	Leu	Lys	Vidmar et al., 2017
Endoplasmin	P14625		peptide-Glu131+Leu-peptide	N	MS	Gly	Asn	Glu	Glu	Leu	Thr	Val	Lys	Vidmar et al., 2017
Endoplasmin	P14625		peptide-Glu40+Gly-peptide	N	MS	Lys	Ser	Arg	Glu	Gly	Ser	Arg	Thr	Vidmar et al., 2017
Endoplasmin	P14625		peptide-Glu632+Lys-peptide	N	MS	Asp	Lys	Ile	Glu	Lys	Ala	Val	Val	Vidmar et al., 2017
Endoplasmin	P14625		peptide-Glu158+Leu-peptide	N	MS	Thr	Arg	Glu	Glu	Leu	Val	Lys	Asn	Vidmar et al., 2017
Endoplasmin	P14625		peptide-Glu141+Lys-peptide	N	MS	Cys	Asp	Lys	Glu	Lys	Asn	Leu	Leu	Vidmar et al., 2017
Endoplasmin	P14625		peptide-Glu54+Ala-peptide	N	MS	Arg	Glu	Glu	Glu	Ala	Ile	Gln	Leu	Vidmar et al., 2017
Endothelial differentiation-related factor 1	O60869		peptide-Glu39+Thr-peptide	N	MS	Glu	Asp	Val	Glu	Thr	Ser	Lys	Lys	Vidmar et al., 2017
Endothelial differentiation-related factor 1	O60869		peptide-Glu76+Val-peptide	N	MS	Val	Thr	Leu	Glu	Val	Gly	Lys	Val	Vidmar et al., 2017
Endothelial differentiation-related factor 1	O60869		peptide-Glu110+Ser-peptide	N	MS	Ala	Asp	Tyr	Glu	Ser	Gly	Arg	Ala	Vidmar et al., 2017
enoyl-CoA hydratase, mitochondrial precursor	P30084	28-290	peptide-Glu221+Ala-peptide	N	MS	Leu	Val	Glu	Glu	Ala	Ile	Gln	Cys	Schilling & Overall, 2008
Epidermal growth factor receptor	P00533		peptide-Glu245+Ser-peptide	N	MS	Gly	Pro	Arg	Glu	Ser	Asp	Cys	Leu	Vidmar et al., 2017
Epidermal growth factor receptor	P00533		peptide-Glu734+Gly-peptide	N	MS	Trp	Ile	Pro	Glu	Gly	Glu	Lys	Val	Vidmar et al., 2017
Epidermal growth factor receptor	P00533		peptide-Glu551+Asn-peptide	N	MS	Glu	Phe	Val	Glu	Asn	Ser	Glu	Cys	Vidmar et al., 2017
Epidermal growth factor receptor	P00533		peptide-Glu736+Lys-peptide	N	MS	Pro	Glu	Gly	Glu	Lys	Val	Lys	Ile	Vidmar et al., 2017
Epidermal growth factor receptor	P00533		peptide-Glu1196+Tyr-peptide	N	MS	Glu	Asn	Ala	Glu	Tyr	Leu	Arg	Val	Vidmar et al., 2017
Epidermal growth factor receptor substrate 15	P42566		peptide-Glu360+Asp-peptide	N	MS	Lys	Glu	Lys	Glu	Asp	Thr	Ile	Lys	Vidmar et al., 2017
Epidermal growth factor receptor substrate 15	P42566		peptide-Glu369+Val-peptide	N	MS	Arg	Thr	Ser	Glu	Val	Gln	Asp	Leu	Vidmar et al., 2017
Epidermal growth factor receptor substrate 15-like 1	Q9UBC2		peptide-Glu488+Ser-peptide	N	MS	Gln	Ser	Gln	Glu	Ser	Asp	Leu	Lys	Vidmar et al., 2017
Epidermal growth factor receptor substrate 15-like 1	Q9UBC2		peptide-Glu439+Ala-peptide	N	MS	Gln	Glu	Leu	Glu	Ala	Gln	Lys	Gln	Vidmar et al., 2017
Epidermal growth factor receptor substrate 15-like 1	Q9UBC2		peptide-Glu527+Thr-peptide	N	MS	Val	Gln	Leu	Glu	Thr	Ile	Ile	Lys	Vidmar et al., 2017
Epidermal growth factor receptor substrate 15-like 1	Q9UBC2		peptide-Glu423+Leu-peptide	N	MS	Glu	Val	Gln	Glu	Leu	Gln	Asn	Asp	Vidmar et al., 2017
Epididymal secretory protein E1	P61916		peptide-Ala19+Glu-peptide	N	MS	Ala	Ala	Gln	Ala	Glu	Pro	Val	Gln	Vidmar et al., 2017
Epsin-1	Q9Y6I3		peptide-Glu425+Leu-peptide	N	MS	Gly	Glu	Leu	Glu	Leu	Leu	Ala	Gly	Vidmar et al., 2017
Equilibrative nucleoside transporter 1	Q99808		peptide-Glu247+Thr-peptide	N	MS	Gly	Glu	Gln	Glu	Thr	Lys	Leu	Asp	Vidmar et al., 2017
ERO1-like protein alpha	Q96HE7		peptide-Glu51+Thr-peptide	N	MS	Cys	Asp	Val	Glu	Thr	Ile	Asp	Arg	Vidmar et al., 2017
ERO1-like protein alpha	Q96HE7		peptide-Glu456+Leu-peptide	N	MS	Ser	Val	Lys	Glu	Leu	Glu	Asn	Phe	Vidmar et al., 2017
ES1 protein homolog, mitochondrial	P30042		peptide-Asp119+Leu-peptide	N	MS	Lys	Ile	Thr	Asp	Leu	Ala	Asn	Leu	Vidmar et al., 2017
ES1 protein homolog, mitochondrial	P30042		peptide-Glu245+Thr-peptide	N	MS	Phe	Met	Cys	Glu	Thr	Ala	Leu	His	Vidmar et al., 2017
Ethanolamine-phosphate cytidylyltransferase	Q99447		peptide-Glu372+Ala-peptide	N	MS	Ala	Phe	Leu	Glu	Ala	Ala	Arg	Gln	Vidmar et al., 2017
eukaryotic initiation factor 4A-I	P60842	146-161	LQME+APHIIVGTPGR	N	MS	Leu	Gln	Met	Glu	Ala	Pro	His	Ile	Schilling & Overall, 2008
eukaryotic initiation factor 4A-I	P60842	45-61	GIYAYG+FEKPSAIQQR	N	MS	Tyr	Ala	Tyr	Gly	Phe	Glu	Lys	Pro	Schilling & Overall, 2008
eukaryotic initiation factor 4A-III	P38919	51-67	GIYAYG+FEKPSAIQQR	N	MS	Tyr	Ala	Tyr	Gly	Phe	Glu	Lys	Pro	Schilling & Overall, 2008
eukaryotic initiation factor 4A-III	P38919	2-411	peptide-Glu315+Arg-peptide	N	MS	Pro	Gln	Lys	Glu	Arg	Glu	Ser	Ile	Schilling & Overall, 2008
eukaryotic peptide chain release factor GTP-binding subunit ERF3A	P15170	367-391	peptide-Glu373+Ile-peptide	N	MS	Glu	Glu	Glu	Glu	Ile	Leu	Pro	Gly	Schilling & Overall, 2008
eukaryotic peptide chain release factor GTP-binding subunit ERF3A	P15170	1-499	peptide-Glu73+His-peptide	N	MS	Pro	Lys	Lys	Glu	His	Val	Asn	Val	Schilling & Overall, 2008
eukaryotic translation elongation factor 1 alpha 2 variant	Q59GP5	1-340	peptide-Glu244+Thr-peptide	N	MS	Gly	Arg	Val	Glu	Thr	Gly	Ile	Leu	Schilling & Overall, 2008
eukaryotic translation elongation factor 1 gamma	Q53YD7	414-428	EYFSWE+GAFQHVGK	N	MS	Phe	Ser	Trp	Glu	Gly	Ala	Phe	Gln	Schilling & Overall, 2008
Eukaryotic translation initiation factor 1	P41567		peptide-Glu99+Ile-peptide	N	MS	Phe	Leu	Val	Glu	Ile	Gly	Leu	Ala	Vidmar et al., 2017
Eukaryotic translation initiation factor 1A, X-chromosomal	P47813		peptide-Glu34+Tyr-peptide	N	MS	Asp	Gly	Gln	Glu	Tyr	Ala	Gln	Val	Vidmar et al., 2017
Eukaryotic translation initiation factor 2 subunit 1	P05198		peptide-Glu264+Lys-peptide	N	MS	Lys	Ile	Glu	Glu	Lys	Arg	Gly	Val	Vidmar et al., 2017
Eukaryotic translation initiation factor 2 subunit 1	P05198		peptide-Glu196+Val-peptide	N	MS	Ala	Asp	Ile	Glu	Val	Ala	Cys	Tyr	Vidmar et al., 2017
Eukaryotic translation initiation factor 2 subunit 1	P05198		peptide-Glu210+Ala-peptide	N	MS	Ala	Val	Lys	Glu	Ala	Leu	Arg	Ala	Vidmar et al., 2017
Eukaryotic translation initiation factor 3 subunit A	Q14152		peptide-Glu874+Glu-peptide	N	MS	Arg	Arg	Glu	Glu	Glu	Arg	Arg	Leu	Vidmar et al., 2017
Eukaryotic translation initiation factor 3 subunit A	Q14152		peptide-Glu875+Arg-peptide	N	MS	Arg	Glu	Glu	Glu	Arg	Arg	Leu	Gly	Vidmar et al., 2017
Eukaryotic translation initiation factor 3 subunit A	Q14152		peptide-Glu896+Gly-peptide	N	MS	Arg	Asp	Ser	Glu	Gly	Thr	Trp	Arg	Vidmar et al., 2017
Eukaryotic translation initiation factor 3 subunit A	Q14152		peptide-Glu1285+Arg-peptide	N	MS	Asp	Leu	Arg	Glu	Arg	Arg	Asp	Leu	Vidmar et al., 2017
Eukaryotic translation initiation factor 3 subunit A	Q14152		peptide-Glu801+Arg-peptide	N	MS	Arg	Lys	Glu	Glu	Arg	Arg	Ile	Thr	Vidmar et al., 2017
Eukaryotic translation initiation factor 3 subunit A	Q14152		peptide-Glu627+His-peptide	N	MS	Ile	Leu	Gln	Glu	His	Glu	Gln	Ile	Vidmar et al., 2017
Eukaryotic translation initiation factor 3 subunit A	Q14152		peptide-Glu1306+Val-peptide	N	MS	Glu	Arg	Glu	Glu	Val	Ser	Ser	Trp	Vidmar et al., 2017
Eukaryotic translation initiation factor 3 subunit B	P55884		peptide-Glu32+Gly-peptide	N	MS	Pro	Pro	Ala	Glu	Gly	Leu	Leu	Arg	Vidmar et al., 2017
Eukaryotic translation initiation factor 3 subunit B	P55884		peptide-Glu15+Arg-peptide	N	MS	Ala	Ala	Glu	Glu	Arg	Ala	Glu	Pro	Vidmar et al., 2017
Eukaryotic translation initiation factor 3 subunit B	P55884		peptide-Glu65+Val-peptide	N	MS	Pro	Glu	Ser	Glu	Val	Arg	Thr	Glu	Vidmar et al., 2017
eukaryotic translation initiation factor 3 subunit C	Q99613	320-331	GTE+ITHAVVIK	N	MS	-	Gly	Thr	Glu	Ile	Thr	His	Ala	Schilling & Overall, 2008
eukaryotic translation initiation factor 3 subunit C	Q99613	1-913	peptide-Glu830+Leu-peptide	N	MS	Ile	Asn	Glu	Glu	Leu	Met	Ala	Ser	Schilling & Overall, 2008
Eukaryotic translation initiation factor 3 subunit G	O75821		peptide-Glu29+Leu-peptide	N	MS	Val	Thr	Ser	Glu	Leu	Leu	Lys	Gly	Vidmar et al., 2017
Eukaryotic translation initiation factor 3 subunit H	O15372		peptide-Glu217+Leu-peptide	N	MS	Leu	Met	Trp	Glu	Leu	Glu	Lys	Lys	Vidmar et al., 2017
Eukaryotic translation initiation factor 3 subunit H	O15372		peptide-Asp315+Ser-peptide	N	MS	Ala	Arg	Met	Asp	Ser	Leu	Leu	Ile	Vidmar et al., 2017
Eukaryotic translation initiation factor 3 subunit J	O75822		peptide-Glu73+Lys-peptide	N	MS	Lys	Ile	Ser	Glu	Lys	Lys	Lys	Ile	Vidmar et al., 2017
eukaryotic translation initiation factor 3 subunit K	Q9UBQ5	1-218	peptide-Glu24+Asn-peptide	N	MS	Tyr	Asn	Pro	Glu	Asn	Leu	Ala	Thr	Schilling & Overall, 2008
Eukaryotic translation initiation factor 3 subunit K	Q9UBQ5		peptide-Glu34+Thr-peptide	N	MS	Arg	Tyr	Val	Glu	Thr	Gln	Ala	Lys	Vidmar et al., 2017
Eukaryotic translation initiation factor 3 subunit K	Q9UBQ5		peptide-Glu5+Gln-peptide	N	MS	Ala	Met	Phe	Glu	Gln	Met	Arg	Ala	Vidmar et al., 2017
Eukaryotic translation initiation factor 3 subunit K	Q9UBQ5		peptide-Glu203+Lys-peptide	N	MS	Asn	Ile	Val	Glu	Lys	Ile	Asp	Phe	Vidmar et al., 2017
Eukaryotic translation initiation factor 4 gamma 1	Q04637		peptide-Glu1202+Gly-peptide	N	MS	Ser	Gln	Pro	Glu	Gly	Leu	Arg	Lys	Vidmar et al., 2017
Eukaryotic translation initiation factor 4 gamma 1	Q04637		peptide-Glu306+Thr-peptide	N	MS	Ile	Ser	Arg	Glu	Thr	Gly	Glu	Pro	Vidmar et al., 2017
Eukaryotic translation initiation factor 4 gamma 1	Q04637		peptide-Glu357+Ile-peptide	N	MS	His	Thr	Val	Glu	Ile	His	Glu	Pro	Vidmar et al., 2017
Eukaryotic translation initiation factor 4 gamma 1	Q04637		peptide-Glu1111+Ala-peptide	N	MS	Ala	Ala	Ser	Glu	Ala	Ala	Arg	Pro	Vidmar et al., 2017
Eukaryotic translation initiation factor 4 gamma 1	Q04637		peptide-Glu326+Val-peptide	N	MS	Pro	Ile	Leu	Glu	Val	Glu	Val	Thr	Vidmar et al., 2017
Eukaryotic translation initiation factor 4 gamma 1	Q04637		peptide-Glu1189+Val-peptide	N	MS	Phe	Ser	Lys	Glu	Val	Glu	Glu	Arg	Vidmar et al., 2017
Eukaryotic translation initiation factor 4 gamma 1	Q04637		peptide-Glu1192+Arg-peptide	N	MS	Glu	Val	Glu	Glu	Arg	Ser	Arg	Glu	Vidmar et al., 2017
Eukaryotic translation initiation factor 4 gamma 1	Q04637		peptide-Glu520+Leu-peptide	N	MS	Lys	Ile	Lys	Glu	Leu	Asn	Lys	Lys	Vidmar et al., 2017
Eukaryotic translation initiation factor 4 gamma 1	Q04637		peptide-Glu176+Arg-peptide	N	MS	Pro	Lys	Arg	Glu	Arg	Lys	Thr	Ile	Vidmar et al., 2017
Eukaryotic translation initiation factor 4 gamma 1	Q04637		peptide-Glu1241+Leu-peptide	N	MS	Ser	Glu	Glu	Glu	Leu	Glu	Lys	Lys	Vidmar et al., 2017
Eukaryotic translation initiation factor 4 gamma 1	Q04637		peptide-Glu525+Ala-peptide	N	MS	Asn	Lys	Lys	Glu	Ala	Val	Gly	Asp	Vidmar et al., 2017
Eukaryotic translation initiation factor 4 gamma 1	Q04637		peptide-Glu1224+Ala-peptide	N	MS	Val	Lys	Arg	Glu	Ala	Ala	Leu	Pro	Vidmar et al., 2017
Eukaryotic translation initiation factor 4 gamma 1	Q04637		peptide-Glu1149+Arg-peptide	N	MS	Leu	Ser	Arg	Glu	Arg	Gly	Glu	Lys	Vidmar et al., 2017
Eukaryotic translation initiation factor 4 gamma 1	Q04637		peptide-Glu339+Phe-peptide	N	MS	Pro	Glu	Ser	Glu	Phe	Ser	Ser	Ser	Vidmar et al., 2017
Eukaryotic translation initiation factor 4 gamma 1	Q04637		peptide-Glu337+Ser-peptide	N	MS	Pro	Val	Pro	Glu	Ser	Glu	Phe	Ser	Vidmar et al., 2017
Eukaryotic translation initiation factor 4B	P23588		peptide-Gly362+Gly-peptide	N	MS	Ser	Ile	Phe	Gly	Gly	Ala	Lys	Pro	Vidmar et al., 2017
Eukaryotic translation initiation factor 4B	P23588		peptide-Glu385+Lys-peptide	N	MS	Lys	Glu	Gln	Glu	Lys	Leu	Gln	Arg	Vidmar et al., 2017
Eukaryotic translation initiation factor 4E	P06730		peptide-Glu7+Thr-peptide	N	MS	Val	Glu	Pro	Glu	Thr	Thr	Pro	Thr	Vidmar et al., 2017
Eukaryotic translation initiation factor 4H	Q15056		peptide-Asp102+Gly-peptide	N	MS	Leu	Thr	Tyr	Asp	Gly	Ala	Leu	Leu	Vidmar et al., 2017
Eukaryotic translation initiation factor 5	P55010		peptide-Glu402+Val-peptide	N	MS	Glu	Asn	Ile	Glu	Val	Val	Tyr	Ser	Vidmar et al., 2017
Eukaryotic translation initiation factor 5	P55010		peptide-Glu218+Ile-peptide	N	MS	Arg	Met	Asp	Glu	Ile	Ser	Asp	His	Vidmar et al., 2017
Eukaryotic translation initiation factor 5	P55010		peptide-Glu238+Arg-peptide	N	MS	Thr	Ile	Glu	Glu	Arg	Val	Asn	Ile	Vidmar et al., 2017
Eukaryotic translation initiation factor 5A-1	P63241		peptide-Glu143+Glu-peptide	N	MS	Ala	Met	Thr	Glu	Glu	Ala	Ala	Val	Vidmar et al., 2017
Eukaryotic translation initiation factor 5A-1	P63241		peptide-Glu70+Asp-peptide	N	MS	Lys	Lys	Tyr	Glu	Asp	Ile	Cys	Pro	Vidmar et al., 2017
Eukaryotic translation initiation factor 5A-1	P63241		peptide-Glu110+Asp-peptide	N	MS	Glu	Val	Arg	Glu	Asp	Leu	Arg	Leu	Vidmar et al., 2017
Eukaryotic translation initiation factor 5A-1	P63241		peptide-Glu144+Ala-peptide	N	MS	Met	Thr	Glu	Glu	Ala	Ala	Val	Ala	Vidmar et al., 2017
Eukaryotic translation initiation factor 5A-1	P63241		peptide-Glu8+Thr-peptide	N	MS	Leu	Asp	Phe	Glu	Thr	Gly	Asp	Ala	Vidmar et al., 2017
Eukaryotic translation initiation factor 5A-1	P63241		peptide-Asp96+Gly-peptide	N	MS	Gly	Ile	Gln	Asp	Gly	Tyr	Leu	Ser	Vidmar et al., 2017
eukaryotic translation initiation factor 5A-2	Q9GZV4	68-85	YE+DICPSTHNMDVPNIK	N	MS	-	-	Tyr	Glu	Asp	Ile	Cys	Pro	Schilling & Overall, 2008
eukaryotic translation initiation factor 5B	Q8N5A0	284-314	peptide-Glu297+Lys-peptide	N	MS	Ala	Ser	Glu	Glu	Lys	Ala	Glu	Thr	Schilling & Overall, 2008
Eukaryotic translation initiation factor 5B	O60841	1-1220	peptide-Glu912+Leu-peptide	N	MS	Pro	Met	Lys	Glu	Leu	Arg	Val	Lys	Schilling & Overall, 2008
eukaryotic translation initiation factor 5B	Q8N5A0	1-1220	peptide-Glu912+Leu-peptide	N	MS	Pro	Met	Lys	Glu	Leu	Arg	Val	Lys	Schilling & Overall, 2008
Eukaryotic translation initiation factor 5B	O60841		peptide-Glu115+Leu-peptide	N	MS	Asp	Ser	Glu	Glu	Leu	Glu	Asp	Lys	Vidmar et al., 2017
Eukaryotic translation initiation factor 5B	O60841		peptide-Glu47+Lys-peptide	N	MS	Lys	Lys	Lys	Glu	Lys	Lys	Lys	Gln	Vidmar et al., 2017
Eukaryotic translation initiation factor 5B	O60841		peptide-Glu1142+Ile-peptide	N	MS	Thr	Ser	Ile	Glu	Ile	Asn	His	Lys	Vidmar et al., 2017
Eukaryotic translation initiation factor 5B	O60841		peptide-Glu77+Thr-peptide	N	MS	Ala	Asp	Arg	Glu	Thr	Val	Ala	Val	Vidmar et al., 2017
Eukaryotic translation initiation factor 5B	O60841		peptide-Glu331+Lys-peptide	N	MS	Lys	Glu	Lys	Glu	Lys	Lys	Lys	Gly	Vidmar et al., 2017
Eukaryotic translation initiation factor 5B	O60841		peptide-Glu603+Arg-peptide	N	MS	Thr	Lys	Glu	Glu	Arg	Ala	Tyr	Asp	Vidmar et al., 2017
Eukaryotic translation initiation factor 5B	O60841		peptide-Glu329+Lys-peptide	N	MS	Glu	Glu	Lys	Glu	Lys	Glu	Lys	Lys	Vidmar et al., 2017
Eukaryotic translation initiation factor 5B	O60841		peptide-Glu404+Gly-peptide	N	MS	Leu	Lys	Lys	Glu	Gly	Lys	Leu	Leu	Vidmar et al., 2017
eukaryotic translation initiation factor 6	P56537	164-188	peptide-Glu172+Leu-peptide	N	MS	Asp	Gln	Asp	Glu	Leu	Ser	Ser	Leu	Schilling & Overall, 2008
Eukaryotic translation initiation factor 6	P56537		peptide-Glu124+Thr-peptide	N	MS	Leu	Asp	Arg	Glu	Thr	Glu	Glu	Ile	Vidmar et al., 2017
Eukaryotic translation initiation factor 6	P56537		peptide-Glu80+Leu-peptide	N	MS	Thr	Asp	Gln	Glu	Leu	Gln	His	Ile	Vidmar et al., 2017
Eukaryotic translation initiation factor 6	P56537		peptide-Glu226+Ala-peptide	N	MS	Lys	Leu	Asn	Glu	Ala	Gln	Pro	Ser	Vidmar et al., 2017
Exosome complex component CSL4	Q9Y3B2		peptide-Glu150+Leu-peptide	N	MS	Ala	Glu	Asn	Glu	Leu	Gly	Val	Val	Vidmar et al., 2017
Exosome complex component CSL4	Q9Y3B2		peptide-Glu181+Phe-peptide	N	MS	His	Thr	Lys	Glu	Phe	Arg	Lys	Val	Vidmar et al., 2017
exosome complex exonuclease RRP42	Q15024	1-291	peptide-Glu278+Ser-peptide	N	MS	His	Lys	Glu	Glu	Ser	Leu	Gly	Pro	Schilling & Overall, 2008
Ezrin	P15311		peptide-Glu444+Trp-peptide	N	MS	Glu	Val	Glu	Glu	Trp	Gln	His	Arg	Vidmar et al., 2017
Ezrin	P15311		peptide-Glu17+Phe-peptide	N	MS	Ala	Glu	Leu	Glu	Phe	Ala	Ile	Gln	Vidmar et al., 2017
Ezrin	P15311		peptide-Glu402+Leu-peptide	N	MS	Ala	Lys	Glu	Glu	Leu	Glu	Arg	Gln	Vidmar et al., 2017
Ezrin	P15311		peptide-Glu502+Leu-peptide	N	MS	Tyr	Ser	Ala	Glu	Leu	Ser	Ser	Glu	Vidmar et al., 2017
Ezrin	P15311		peptide-Glu289+Leu-peptide	N	MS	Gly	Asn	His	Glu	Leu	Tyr	Met	Arg	Vidmar et al., 2017
Ezrin	P15311		peptide-Glu423+Tyr-peptide	N	MS	Glu	Leu	Ala	Glu	Tyr	Thr	Ala	Lys	Vidmar et al., 2017
Ezrin	P15311		peptide-Thr468+Ala-peptide	N	MS	Leu	Val	Met	Thr	Ala	Pro	Pro	Pro	Vidmar et al., 2017
Ezrin	P15311		peptide-Glu432+Glu-peptide	N	MS	Ala	Leu	Leu	Glu	Glu	Ala	Arg	Arg	Vidmar et al., 2017
Ezrin	P15311		peptide-Glu506+Gly-peptide	N	MS	Leu	Ser	Ser	Glu	Gly	Ile	Arg	Asp	Vidmar et al., 2017
Ezrin	P15311		peptide-Glu556+Asn-peptide	N	MS	Ile	His	Asn	Glu	Asn	Met	Arg	Gln	Vidmar et al., 2017
Ezrin	P15311		peptide-Glu462+Leu-peptide	N	MS	Thr	Lys	Glu	Glu	Leu	His	Leu	Val	Vidmar et al., 2017
Ezrin	P15311		peptide-Glu461+Glu-peptide	N	MS	Lys	Thr	Lys	Glu	Glu	Leu	His	Leu	Vidmar et al., 2017
Ezrin	P15311		peptide-Glu433+Ala-peptide	N	MS	Leu	Leu	Glu	Glu	Ala	Arg	Arg	Arg	Vidmar et al., 2017
Ezrin	P15311		peptide-Glu390+Ala-peptide	N	MS	Glu	Arg	Leu	Glu	Ala	Asp	Arg	Met	Vidmar et al., 2017
Ezrin	P15311		peptide-Glu190+Tyr-peptide	N	MS	Ala	Met	Leu	Glu	Tyr	Leu	Lys	Ile	Vidmar et al., 2017
Ezrin	P15311		peptide-Glu451+Ala-peptide	N	MS	Arg	Ala	Lys	Glu	Ala	Gln	Asp	Asp	Vidmar et al., 2017
Ezrin	P15311		peptide-Glu367+Gln-peptide	N	MS	Glu	Leu	Ser	Glu	Gln	Ile	Gln	Arg	Vidmar et al., 2017
Ezrin	P15311		peptide-Glu544+Asn-peptide	N	MS	Ala	Arg	Asp	Glu	Asn	Lys	Arg	Thr	Vidmar et al., 2017
Ezrin	P15311		peptide-Glu346+Leu-peptide	N	MS	Glu	Lys	Glu	Glu	Leu	Met	Leu	Arg	Vidmar et al., 2017
Ezrin	P15311		peptide-Glu404+Arg-peptide	N	MS	Glu	Glu	Leu	Glu	Arg	Gln	Ala	Val	Vidmar et al., 2017
Ezrin	P15311		peptide-Glu301+Val-peptide	N	MS	Asp	Thr	Ile	Glu	Val	Gln	Gln	Met	Vidmar et al., 2017
Ezrin	P15311		peptide-Glu364+Leu-peptide	N	MS	Ala	Glu	Arg	Glu	Leu	Ser	Glu	Gln	Vidmar et al., 2017
Ezrin	P15311		peptide-Glu345+Glu-peptide	N	MS	Arg	Glu	Lys	Glu	Glu	Leu	Met	Leu	Vidmar et al., 2017
Ezrin	P15311		peptide-Glu525+Arg-peptide	N	MS	Glu	Lys	Asn	Glu	Arg	Val	Gln	Arg	Vidmar et al., 2017
Ezrin	P15311		peptide-Glu336+Lys-peptide	N	MS	Val	Glu	Arg	Glu	Lys	Glu	Gln	Met	Vidmar et al., 2017
Ezrin	P15311		peptide-Glu338+Gln-peptide	N	MS	Arg	Glu	Lys	Glu	Gln	Met	Met	Arg	Vidmar et al., 2017
F-actin-capping protein subunit alpha-1	P52907		peptide-Glu104+Ala-peptide	N	MS	Leu	Arg	Lys	Glu	Ala	Ser	Asp	Pro	Vidmar et al., 2017
F-actin-capping protein subunit alpha-1	P52907		peptide-Glu48+Gly-peptide	N	MS	Leu	Leu	Arg	Glu	Gly	Ala	Ala	His	Vidmar et al., 2017
F-actin-capping protein subunit alpha-1	P52907		peptide-Glu12+Lys-peptide	N	MS	Ser	Asp	Glu	Glu	Lys	Val	Arg	Ile	Vidmar et al., 2017
F-actin-capping protein subunit alpha-1	P52907		peptide-Asp35+Val-peptide	N	MS	Val	Phe	Asn	Asp	Val	Arg	Leu	Leu	Vidmar et al., 2017
F-actin-capping protein subunit alpha-1	P52907		peptide-Glu31+Val-peptide	N	MS	Glu	Phe	Asn	Glu	Val	Phe	Asn	Asp	Vidmar et al., 2017
F-BAR domain only protein 2	Q0JRZ9		peptide-Arg152+Leu-peptide	N	MS	Glu	Gln	Glu	Arg	Leu	Lys	Lys	Glu	Vidmar et al., 2017
F-box protein FBW7 isoform 2 variant	Q53F40	542-554	HQSA+VTCLQFNK	N	MS	His	Gln	Ser	Ala	Val	Thr	Cys	Leu	Schilling & Overall, 2008
F-box protein FBW7 isoform 2 variant	Q59ET6	539-551	HQSA+VTCLQFNK	N	MS	His	Gln	Ser	Ala	Val	Thr	Cys	Leu	Schilling & Overall, 2008
FACT complex subunit SPT16	Q9Y5B9	2-1047	peptide-Glu914+Gly-peptide	N	MS	Asp	Asp	Pro	Glu	Gly	Phe	Phe	Glu	Schilling & Overall, 2008
FACT complex subunit SSRP1	Q08945		peptide-Glu638+Lys-peptide	N	MS	Val	Lys	Met	Glu	Lys	Lys	Ser	Thr	Vidmar et al., 2017
Far upstream element-binding protein 1	Q96AE4		peptide-Glu169+Lys-peptide	N	MS	Gln	Ile	Val	Glu	Lys	Gly	Arg	Pro	Vidmar et al., 2017
Far upstream element-binding protein 1	Q96AE4		peptide-Glu213+Arg-peptide	N	MS	Gln	Leu	Gln	Glu	Arg	Ala	Gly	Val	Vidmar et al., 2017
Far upstream element-binding protein 1	Q96AE4		peptide-Glu253+Leu-peptide	N	MS	Met	Val	Leu	Glu	Leu	Ile	Arg	Asp	Vidmar et al., 2017
Far upstream element-binding protein 1	Q96AE4		peptide-Glu155+Ser-peptide	N	MS	Gly	Thr	Pro	Glu	Ser	Val	Gln	Ser	Vidmar et al., 2017
Far upstream element-binding protein 2	Q92945		peptide-Glu624+Tyr-peptide	N	MS	Ala	Trp	Glu	Glu	Tyr	Tyr	Lys	Lys	Vidmar et al., 2017
Far upstream element-binding protein 2	Q92945		peptide-Asp173+Ser-peptide	N	MS	Ile	Gln	Gln	Asp	Ser	Gly	Cys	Lys	Vidmar et al., 2017
Far upstream element-binding protein 2	Q92945		peptide-Glu119+Ser-peptide	N	MS	Asp	Gln	Pro	Glu	Ser	Lys	Lys	Leu	Vidmar et al., 2017
Far upstream element-binding protein 2	Q92945		peptide-Glu189+Arg-peptide	N	MS	Gly	Leu	Pro	Glu	Arg	Ser	Val	Ser	Vidmar et al., 2017
Far upstream element-binding protein 2	Q92945		peptide-Glu680+Tyr-peptide	N	MS	Ala	Trp	Ala	Glu	Tyr	Tyr	Arg	Gln	Vidmar et al., 2017
Farnesyl pyrophosphate synthase	P14324		peptide-Glu290+His-peptide	N	MS	Gly	Glu	Lys	Glu	His	Ala	Asn	Ala	Vidmar et al., 2017
farnesyl pyrophosphate synthetase	P14324	1-419	peptide-Glu32+Met-peptide	N	MS	Thr	Glu	Asp	Glu	Met	Gly	His	Pro	Schilling & Overall, 2008
FAS-associated factor 1	Q9UNN5		peptide-Glu540+Gln-peptide	N	MS	Phe	Arg	Leu	Glu	Gln	Ile	Arg	Lys	Vidmar et al., 2017
fascin-3	Q9NQT6	1-498	peptide-Glu377+Glu-peptide	N	MS	Gly	Pro	Asn	Glu	Glu	Phe	Gly	Ile	Schilling & Overall, 2008
fatty acid synthase	P49327	1976-1995	DGLLENQTPE+FFQDVCKPK	N	MS	Gln	Thr	Pro	Glu	Phe	Phe	Gln	Asp	Schilling & Overall, 2008
fatty acid synthase	P49327	443-468	peptide-Asp456+Ile-peptide	N	MS	Met	Leu	Asn	Asp	Ile	Ala	Ala	Val	Schilling & Overall, 2008
fatty acid synthase	P49327	2482-2505	peptide-Glu2491+Ser-peptide	N	MS	Ser	Gly	Leu	Glu	Ser	Ile	Ile	Ser	Schilling & Overall, 2008
fatty acid synthase	P49327	1-2511	peptide-Glu543+Ser-peptide	N	MS	Ser	Thr	Asp	Glu	Ser	Thr	Phe	Asp	Schilling & Overall, 2008
fatty acid synthase	P49327	1-2511	peptide-Asp1229+Thr-peptide	N	MS	Ala	Cys	Leu	Asp	Thr	Ala	Val	Glu	Schilling & Overall, 2008
fatty acid synthase	P49327	1-2511	peptide-Glu1211+Asp-peptide	N	MS	Lys	Leu	Pro	Glu	Asp	Pro	Leu	Leu	Schilling & Overall, 2008
fatty acid synthase	P49327	1-2511	peptide-Glu1981+Asn-peptide	N	MS	Gly	Leu	Leu	Glu	Asn	Gln	Thr	Pro	Schilling & Overall, 2008
fatty acid synthase	P49327	1-2511	peptide-Glu1233+Asn-peptide	N	MS	Thr	Ala	Val	Glu	Asn	Met	Pro	Ser	Schilling & Overall, 2008
Fatty acid synthase	P49327		peptide-Glu719+Ala-peptide	N	MS	Ser	Ile	Pro	Glu	Ala	Gln	Trp	His	Vidmar et al., 2017
Fatty acid synthase	P49327		peptide-Glu270+Gln-peptide	N	MS	Asp	Ile	Gln	Glu	Gln	Leu	Ile	Arg	Vidmar et al., 2017
Fatty acid-binding protein, epidermal	Q01469		peptide-Glu75+Thr-peptide	N	MS	Lys	Phe	Glu	Glu	Thr	Thr	Ala	Asp	Vidmar et al., 2017
Fatty acid-binding protein, epidermal	Q01469		peptide-Glu8+Gly-peptide	N	MS	Gln	Gln	Leu	Glu	Gly	Arg	Trp	Arg	Vidmar et al., 2017
Fatty acid-binding protein, epidermal	Q01469		peptide-Glu119+Cys-peptide	N	MS	Leu	Val	Val	Glu	Cys	Val	Met	Asn	Vidmar et al., 2017
FEN1 protein	Q6FHX6	1-380	peptide-Glu178+Asp-peptide	N	MS	Ala	Ala	Thr	Glu	Asp	Met	Asp	Cys	Schilling & Overall, 2008
ferredoxin	P00202	1-59	peptide-Glu28+Glu-peptide	N		Thr	Leu	Asp	Glu	Glu	Lys	Gly	Ile	Hausinger et al., 1982
ferredoxin	P00202	1-59	peptide-Glu42+Cys-peptide	N		Glu	Cys	Val	Glu	Cys	Gly	Ala	Cys	Hausinger et al., 1982
ferredoxin	P00202	1-59	peptide-Glu48+Ala-peptide	N		Ala	Cys	Glu	Glu	Ala	Cys	Pro	Asn	Hausinger et al., 1982
ferredoxin	P00233	1-95	peptide-Asp26+Ala-peptide	N		Phe	Ile	Leu	Asp	Ala	Gly	Glu	Glu	Hase et al., 1982
ferredoxin	P00233	1-95	peptide-Glu30+Ala-peptide	N		Ala	Gly	Glu	Glu	Ala	Gly	Leu	Asp	Hase et al., 1982
ferredoxin	P00233	1-95	peptide-Arg40+Ala-peptide	N		Tyr	Ser	Cys	Arg	Ala	Gly	Ala	Cys	Hase et al., 1982
ferredoxin	P00243	1-97	peptide-Glu31+Ala-peptide	N		Ala	Ala	Glu	Glu	Ala	Gly	Leu	Asp	Hase et al., 1982
ferredoxin	P00243	1-97	peptide-Arg41+Ala-peptide	N		Tyr	Ser	Cys	Arg	Ala	Gly	Ala	Cys	Hase et al., 1982
ferredoxin	P00243	1-97	peptide-Glu71+Ala-peptide	N		Asp	Gln	Ile	Glu	Ala	Gly	Tyr	Val	Hase et al., 1982
ferredoxin	P00243	1-97	peptide-Glu89+Thr-peptide	N		Cys	Thr	Ile	Glu	Thr	His	Lys	Glu	Hase et al., 1982
ferredoxin-1	P00230	1-96	peptide-Asp26+Ala-peptide	N		Tyr	Val	Leu	Asp	Ala	Ala	Glu	Glu	Wakabayashi et al., 1980
ferredoxin-1	P00230	1-96	peptide-Glu30+Ala-peptide	N		Ala	Ala	Glu	Glu	Ala	Gly	Leu	Asp	Wakabayashi et al., 1980
ferredoxin-1	P00230	1-96	peptide-Glu59+Asp-peptide	N		Val	Asp	Gln	Glu	Asp	Gln	Ser	Phe	Wakabayashi et al., 1980
ferredoxin-1	P00230	1-96	peptide-Glu88+Thr-peptide	N		Val	Thr	Ile	Glu	Thr	His	Lys	Glu	Wakabayashi et al., 1980
ferredoxin-2	P00232	1-98	peptide-Asp27+Ala-peptide	N		Tyr	Val	Leu	Asp	Ala	Ala	Glu	Asp	Wakabayashi et al., 1980
ferredoxin-2	P00232	1-98	peptide-Glu30+Asp-peptide	N		Asp	Ala	Ala	Glu	Asp	Thr	Gly	Leu	Wakabayashi et al., 1980
ferredoxin-2	P00232	1-98	peptide-Glu71+Ala-peptide	N		Glu	Gln	Met	Glu	Ala	Gly	Trp	Val	Wakabayashi et al., 1980
ferredoxin-2	P00232	1-98	peptide-Glu89+Thr-peptide	N		Val	Thr	Ile	Glu	Thr	His	Lys	Glu	Wakabayashi et al., 1980
ferredoxin-2	P00232	1-98	peptide-Asp27+Ala-peptide	N		Tyr	Val	Leu	Asp	Ala	Ala	Glu	Asp	Wakabayashi et al., 1980
ferredoxin-2	P00232	1-98	peptide-Glu30+Asp-peptide	N		Asp	Ala	Ala	Glu	Asp	Thr	Gly	Leu	Wakabayashi et al., 1980
ferredoxin-2	P00232	1-98	peptide-Glu60+Asp-peptide	N		Val	Asn	Gln	Glu	Asp	Gly	Ser	Phe	Wakabayashi et al., 1980
Filamin A	A6NDY9	1-2315	peptide-Glu1011+Gly-peptide	N	MS	Pro	Arg	Glu	Glu	Gly	Pro	Tyr	Glu	Schilling & Overall, 2008
filamin B isoform 9	O75369-9	1044-1066	peptide-Glu1051+Gly-peptide	N	MS	Pro	Gly	Leu	Glu	Gly	Gly	Leu	Val	Schilling & Overall, 2008
filamin-A	P21333	2-2647	peptide-Glu1038+Gly-peptide	N	MS	Pro	Arg	Glu	Glu	Gly	Pro	Tyr	Glu	Schilling & Overall, 2008
Filamin-A	P21333		peptide-Glu990+Phe-peptide	N	MS	Lys	Asp	Gln	Glu	Phe	Thr	Val	Lys	Vidmar et al., 2017
Filamin-A	P21333		peptide-Glu2306+Val-peptide	N	MS	Gly	Asp	Tyr	Glu	Val	Ser	Val	Lys	Vidmar et al., 2017
Filamin-A	P21333		peptide-Glu2282+Ile-peptide	N	MS	Ser	Lys	Ala	Glu	Ile	Ser	Phe	Glu	Vidmar et al., 2017
Filamin-A	P21333		peptide-Glu600+Ala-peptide	N	MS	Phe	Val	Val	Glu	Ala	Ile	Gly	Asp	Vidmar et al., 2017
Filamin-A	P21333		peptide-Glu1306+Thr-peptide	N	MS	Asn	Leu	Thr	Glu	Thr	Tyr	Val	Gln	Vidmar et al., 2017
Filamin-A	P21333		peptide-Glu315+Val-peptide	N	MS	Gly	Gln	Gly	Glu	Val	Leu	Val	Tyr	Vidmar et al., 2017
Filamin-A	P21333		peptide-Glu587+Gly-peptide	N	MS	Pro	Gly	Leu	Glu	Gly	Gly	Val	Val	Vidmar et al., 2017
Filamin-A	P21333		peptide-Glu1379+Thr-peptide	N	MS	Phe	Thr	Val	Glu	Thr	Arg	Gly	Ala	Vidmar et al., 2017
Filamin-A	P21333		peptide-Glu2168+Ile-peptide	N	MS	Lys	Ile	Pro	Glu	Ile	Ser	Ile	Gln	Vidmar et al., 2017
Filamin-A	P21333		peptide-Glu417+Val-peptide	N	MS	Gly	Glu	Val	Glu	Val	Val	Ile	Gln	Vidmar et al., 2017
Filamin-A	P21333		peptide-Glu1326+Gly-peptide	N	MS	Pro	Tyr	Glu	Glu	Gly	Leu	His	Ser	Vidmar et al., 2017
Filamin-A	P21333		peptide-Met28+Pro-peptide	N	MS	Asp	Ala	Glu	Met	Pro	Ala	Thr	Glu	Vidmar et al., 2017
Filamin-A	P21333		peptide-Glu1277+Phe-peptide	N	MS	Ala	Thr	Thr	Glu	Phe	Ser	Val	Asp	Vidmar et al., 2017
Filamin-A	P21333		peptide-Glu2235+Gly-peptide	N	MS	Pro	Leu	Gly	Glu	Gly	Gly	Ala	His	Vidmar et al., 2017
Filamin-A	P21333		peptide-Glu2265+Ala-peptide	N	MS	Trp	Thr	Arg	Glu	Ala	Gly	Ala	Gly	Vidmar et al., 2017
Filamin-A	P21333		peptide-Glu652+Asp-peptide	N	MS	Cys	Asn	Ser	Glu	Asp	Ile	Arg	Leu	Vidmar et al., 2017
Filamin-B	O75369		peptide-Glu1051+Gly-peptide	N	MS	Pro	Gly	Leu	Glu	Gly	Gly	Leu	Val	Vidmar et al., 2017
Filamin-B	O75369		peptide-Glu448+Ala-peptide	N	MS	Gln	Val	Gly	Glu	Ala	Cys	Asn	Pro	Vidmar et al., 2017
Filamin-B	O75369		peptide-Glu1115+Val-peptide	N	MS	Leu	Phe	Glu	Glu	Val	His	Ile	Pro	Vidmar et al., 2017
Filamin-B	O75369		peptide-Glu1033+Ala-peptide	N	MS	Tyr	Thr	Val	Glu	Ala	Ser	Leu	Pro	Vidmar et al., 2017
Filamin-B	O75369		peptide-Glu2097+Ser-peptide	N	MS	Arg	Val	Lys	Glu	Ser	Ile	Thr	Arg	Vidmar et al., 2017
Filamin-B	O75369		peptide-Glu1775+Ile-peptide	N	MS	Ala	Thr	Pro	Glu	Ile	Val	Asp	Asn	Vidmar et al., 2017
Filamin-B	O75369		peptide-Glu1973+His-peptide	N	MS	Glu	Val	Gly	Glu	His	Leu	Val	Ser	Vidmar et al., 2017
Filamin-B	O75369		peptide-Glu2577+Arg-peptide	N	MS	Val	Val	Lys	Glu	Arg	Gly	Asp	Tyr	Vidmar et al., 2017
Filamin-B	O75369		peptide-Glu656+Lys-peptide	N	MS	Pro	Gly	Leu	Glu	Lys	Ser	Gly	Cys	Vidmar et al., 2017
Filamin-B	O75369		peptide-Asp1254+Ser-peptide	N	MS	Phe	Thr	Val	Asp	Ser	Arg	Pro	Leu	Vidmar et al., 2017
Filamin-B	O75369		peptide-Glu5+Lys-peptide	N	MS	Pro	Val	Thr	Glu	Lys	Asp	Leu	Ala	Vidmar et al., 2017
Filamin-B	O75369		peptide-Glu1305+Val-peptide	N	MS	His	Val	Val	Glu	Val	Thr	Tyr	Asp	Vidmar et al., 2017
Filamin-B	O75369		peptide-Glu2190+Gly-peptide	N	MS	Pro	Leu	Gly	Glu	Gly	Gly	Ala	His	Vidmar et al., 2017
Filamin-B	O75369		peptide-Glu1998+Ile-peptide	N	MS	Val	Gln	Ser	Glu	Ile	Gly	Asp	Ala	Vidmar et al., 2017
Filamin-B	O75369		peptide-Glu1169+Ala-peptide	N	MS	Leu	Gly	Leu	Glu	Ala	Val	Ser	Asp	Vidmar et al., 2017
Filamin-B	O75369		peptide-Glu499+Leu-peptide	N	MS	Gly	Leu	Glu	Glu	Leu	Val	Lys	Gln	Vidmar et al., 2017
Filamin-B	O75369		peptide-Glu546+Ala-peptide	N	MS	Val	Gly	Pro	Glu	Ala	Gly	Met	Gln	Vidmar et al., 2017
Filamin-B	O75369		peptide-Glu2237+Ile-peptide	N	MS	Ser	Lys	Ala	Glu	Ile	Thr	Phe	Asp	Vidmar et al., 2017
Filamin-B	O75369		peptide-Glu2273+Ser-peptide	N	MS	His	Ile	Pro	Glu	Ser	Pro	Tyr	Leu	Vidmar et al., 2017
Filamin-B	O75369		peptide-Gly1531+Val-peptide	N	MS	Ser	Ser	Tyr	Gly	Val	Pro	Ala	Ser	Vidmar et al., 2017
Filamin-B	O75369		peptide-Asp1021+Gly-peptide	N	MS	Val	Thr	Tyr	Asp	Gly	His	Pro	Val	Vidmar et al., 2017
Filamin-B	O75369		peptide-Glu2261+Val-peptide	N	MS	Gly	Asn	Tyr	Glu	Val	Ser	Ile	Lys	Vidmar et al., 2017
Filamin-B	O75369		peptide-Glu578+Val-peptide	N	MS	Ile	Gly	Ser	Glu	Val	Gly	Ser	Leu	Vidmar et al., 2017
Filamin-B	O75369		peptide-Glu1000+Asn-peptide	N	MS	Thr	Gly	Arg	Glu	Asn	Ser	Thr	Ala	Vidmar et al., 2017
Filamin-B	O75369		peptide-Glu2207+Ala-peptide	N	MS	Glu	Arg	Gly	Glu	Ala	Gly	Val	Pro	Vidmar et al., 2017
Filamin-B	O75369		peptide-Glu2123+Ile-peptide	N	MS	Lys	Ile	Pro	Glu	Ile	Asn	Ser	Ser	Vidmar et al., 2017
Filamin-B	O75369		peptide-Glu2220+Ala-peptide	N	MS	Trp	Thr	Arg	Glu	Ala	Gly	Ala	Gly	Vidmar et al., 2017
Filamin-B	O75369		peptide-Glu1160+Ala-peptide	N	MS	Asp	Cys	Ser	Glu	Ala	Gly	Pro	Gly	Vidmar et al., 2017
Filamin-B	O75369		peptide-Glu471+Thr-peptide	N	MS	Arg	Ile	Arg	Glu	Thr	Thr	Asp	Phe	Vidmar et al., 2017
Filamin-B	O75369		peptide-Glu1324+Gly-peptide	N	MS	Ala	Val	Thr	Glu	Gly	Cys	Gln	Pro	Vidmar et al., 2017
Filamin-C	Q14315		peptide-Glu493+Val-peptide	N	MS	Arg	Val	Lys	Glu	Val	Ala	Asp	Phe	Vidmar et al., 2017
Filamin-C	Q14315		peptide-Glu508+Leu-peptide	N	MS	Gly	Ser	Gly	Glu	Leu	Lys	Val	Thr	Vidmar et al., 2017
Filamin-C	Q14315		peptide-Glu309+Val-peptide	N	MS	Gly	Val	Gly	Glu	Val	Leu	Val	Tyr	Vidmar et al., 2017
Filamin-C	Q14315		peptide-Glu600+Val-peptide	N	MS	Ile	Gly	Thr	Glu	Val	Gly	Thr	Leu	Vidmar et al., 2017
FK506-binding protein 3	Q00688	1-224	peptide-Glu68+Thr-peptide	N	MS	His	Leu	Phe	Glu	Thr	Lys	Arg	Phe	Schilling & Overall, 2008
formate acetyltransferase 1	P09373	2-760	peptide-Glu701+Gly-peptide	N	MS	Ala	Ser	Ile	Glu	Gly	Gly	Gln	His	Timmer et al., 2009
Fragile X mental retardation syndrome-related protein 1	P51114		peptide-Glu531+Asn-peptide	N	MS	Ser	Val	Asn	Glu	Asn	Gly	Leu	Val	Vidmar et al., 2017
fructose-bisphosphate aldolase A	P04075	259-289	peptide-Glu279+Ala-peptide	N	MS	Ser	Glu	Glu	Glu	Ala	Ser	Ile	Asn	Schilling & Overall, 2008
fructose-bisphosphate aldolase A	P04075	246-258	EE+IAMATVTALR	N	MS	-	-	Glu	Glu	Ile	Ala	Met	Ala	Schilling & Overall, 2008
fructose-bisphosphate aldolase A	P04075	173-200	peptide-Glu190+Ile-peptide	N	MS	Val	Glu	Pro	Glu	Ile	Leu	Pro	Asp	Schilling & Overall, 2008
fructose-bisphosphate aldolase A	P04075	2-364	peptide-Glu122+Thr-peptide	N	MS	Thr	Asn	Gly	Glu	Thr	Thr	Thr	Gln	Schilling & Overall, 2008
Fructose-bisphosphate aldolase A	P04075		peptide-Gly303+Arg-peptide	N	MS	Phe	Ser	Tyr	Gly	Arg	Ala	Leu	Gln	Vidmar et al., 2017
Fructose-bisphosphate aldolase A	P04075		peptide-Asp18+Ile-peptide	N	MS	Glu	Leu	Ser	Asp	Ile	Ala	His	Arg	Vidmar et al., 2017
Fructose-bisphosphate aldolase A	P04075		peptide-Glu225+Gly-peptide	N	MS	Ile	Tyr	Leu	Glu	Gly	Thr	Leu	Leu	Vidmar et al., 2017
Fructose-bisphosphate aldolase A	P04075		peptide-Glu15+Leu-peptide	N	MS	Gln	Lys	Lys	Glu	Leu	Ser	Asp	Ile	Vidmar et al., 2017
Fructose-bisphosphate aldolase A	P04075		peptide-Glu156+His-peptide	N	MS	Lys	Ile	Gly	Glu	His	Thr	Pro	Ser	Vidmar et al., 2017
Fructose-bisphosphate aldolase A	P04075		peptide-Glu327+Tyr-peptide	N	MS	Ala	Gln	Glu	Glu	Tyr	Val	Lys	Arg	Vidmar et al., 2017
Fructose-bisphosphate aldolase A	P04075		peptide-Glu133+Arg-peptide	N	MS	Gly	Leu	Ser	Glu	Arg	Cys	Ala	Gln	Vidmar et al., 2017
Fructose-bisphosphate aldolase A	P04075		peptide-Glu54+Asn-peptide	N	MS	Asn	Thr	Glu	Glu	Asn	Arg	Arg	Phe	Vidmar et al., 2017
Fructose-bisphosphate aldolase A	P04075		peptide-Glu355+Ser-peptide	N	MS	Ala	Ala	Ser	Glu	Ser	Leu	Phe	Val	Vidmar et al., 2017
Fructose-bisphosphate aldolase A	P04075		peptide-Glu35+Ser-peptide	N	MS	Ala	Ala	Asp	Glu	Ser	Thr	Gly	Ser	Vidmar et al., 2017
Fructose-bisphosphate aldolase A	P04075		peptide-Glu207+Lys-peptide	N	MS	Tyr	Val	Thr	Glu	Lys	Val	Leu	Ala	Vidmar et al., 2017
Fructose-bisphosphate aldolase A	P04075		peptide-Glu319+Asn-peptide	N	MS	Gly	Lys	Lys	Glu	Asn	Leu	Lys	Ala	Vidmar et al., 2017
fructose-bisphosphate aldolase C	P09972	246-258	EE+IAMATVTALR	N	MS	-	-	Glu	Glu	Ile	Ala	Met	Ala	Schilling & Overall, 2008
fructose-bisphosphate aldolase C	P09972	173-200	peptide-Glu190+Ile-peptide	N	MS	Val	Glu	Pro	Glu	Ile	Leu	Pro	Asp	Schilling & Overall, 2008
fructose-bisphosphate aldolase C	P09972	2-364	peptide-Glu122+Thr-peptide	N	MS	Thr	Asp	Gly	Glu	Thr	Thr	Thr	Gln	Schilling & Overall, 2008
full-length cDNA 5-PRIME end of clone CS0DN005YI08 of Adult brain of Homo sapiens	Q86SX1	183-196	E+SLTDPSKLDSGK	N	MS	-	-	-	Glu	Ser	Leu	Thr	Asp	Schilling & Overall, 2008
full-length cDNA 5-PRIME end of clone CS0DN005YI08 of Adult brain of Homo sapiens	Q86SX1	1-262	peptide-Glu242+Ala-peptide	N	MS	Ala	Phe	Met	Glu	Ala	Leu	Gln	Ala	Schilling & Overall, 2008
full-length cDNA 5-PRIME end of clone CS0DN005YI08 of Adult brain of Homo sapiens	Q86SX1	1-262	peptide-Glu164+Ile-peptide	N	MS	Ser	Asn	Lys	Glu	Ile	Phe	Leu	Arg	Schilling & Overall, 2008
Fumarate hydratase, mitochondrial	P07954		peptide-Glu129+Gly-peptide	N	MS	Glu	Val	Ala	Glu	Gly	Lys	Leu	Asn	Vidmar et al., 2017
Fumarate hydratase, mitochondrial	P07954		peptide-Glu86+Arg-peptide	N	MS	Gly	Val	Thr	Glu	Arg	Met	Pro	Thr	Vidmar et al., 2017
Fumarate hydratase, mitochondrial	P07954		peptide-Glu205+Val-peptide	N	MS	Glu	Val	His	Glu	Val	Leu	Leu	Pro	Vidmar et al., 2017
Fumarate hydratase, mitochondrial	P07954		peptide-Glu488+Leu-peptide	N	MS	Thr	Ala	Ile	Glu	Leu	Gly	Tyr	Leu	Vidmar et al., 2017
Fumarylacetoacetate hydrolase domain-containing protein 2A	Q96GK7		peptide-Asp26+Met-peptide	N	MS	Pro	Ser	Arg	Asp	Met	Arg	Leu	Val	Vidmar et al., 2017
fusion	Q59H57	215-246	peptide-Glu217+Cys-peptide	N	MS	-	-	Asn	Glu	Cys	Asn	Gln	Cys	Schilling & Overall, 2008
fusion	Q59H57	1-300	peptide-Glu132+Phe-peptide	N	MS	Asp	Gly	Lys	Glu	Phe	Ser	Gly	Asn	Schilling & Overall, 2008
fusion	Q59H57	1-300	peptide-Asp116+Asp-peptide	N	MS	Val	Ser	Phe	Asp	Asp	Pro	Pro	Ser	Schilling & Overall, 2008
FYVE and coiled-coil domain-containing protein 1	Q9BQS8		peptide-Glu636+Gly-peptide	N	MS	Gln	Leu	Leu	Glu	Gly	Lys	Leu	Gln	Vidmar et al., 2017
FYVE and coiled-coil domain-containing protein 1	Q9BQS8		peptide-Glu303+Val-peptide	N	MS	Lys	Gln	Trp	Glu	Val	Thr	Gln	Ala	Vidmar et al., 2017
FYVE and coiled-coil domain-containing protein 1	Q9BQS8		peptide-Glu419+Val-peptide	N	MS	Lys	Val	Glu	Glu	Val	Asn	Arg	Gln	Vidmar et al., 2017
FYVE and coiled-coil domain-containing protein 1	Q9BQS8		peptide-Glu475+Leu-peptide	N	MS	Arg	Leu	Gln	Glu	Leu	Leu	Ala	His	Vidmar et al., 2017
FYVE and coiled-coil domain-containing protein 1	Q9BQS8		peptide-Glu624+Leu-peptide	N	MS	Leu	Glu	Lys	Glu	Leu	Gln	Asn	Val	Vidmar et al., 2017
galactitol-specific phosphotransferase enzyme IIB component	P37188	1-94	peptide-Glu25+Leu-peptide	N	MS	Glu	Ile	Lys	Glu	Leu	Cys	Gln	Asn	Timmer et al., 2009
galactitol-specific phosphotransferase enzyme IIB component	P37188	1-94	peptide-Glu22+Ile-peptide	N	MS	Ala	Ala	Glu	Glu	Ile	Lys	Glu	Leu	Timmer et al., 2009
Galectin-1	P09382		peptide-Glu116+Ala-peptide	N	MS	Leu	Asn	Leu	Glu	Ala	Ile	Asn	Tyr	Vidmar et al., 2017
Galectin-1	P09382		peptide-Glu106+Phe-peptide	N	MS	Asp	Gly	Tyr	Glu	Phe	Lys	Phe	Pro	Vidmar et al., 2017
Gamma-aminobutyric acid receptor-associated protein	O95166		peptide-Glu7+Glu-peptide	N	MS	Val	Tyr	Lys	Glu	Glu	His	Pro	Phe	Vidmar et al., 2017
gamma-enolase	P09104	372-394	peptide-Glu377+Asp-peptide	N	MS	Gly	Glu	Thr	Glu	Asp	Thr	Phe	Ile	Schilling & Overall, 2008
gamma-enolase	P09104	2-434	peptide-Glu402+Arg-peptide	N	MS	Cys	Arg	Ser	Glu	Arg	Leu	Ala	Lys	Schilling & Overall, 2008
gamma-enolase	P09104	2-434	peptide-Glu45+Ala-peptide	N	MS	Gly	Ile	Tyr	Glu	Ala	Leu	Glu	Leu	Schilling & Overall, 2008
gamma-enolase	P09104	2-434	peptide-Glu167+Phe-peptide	N	MS	Ala	Met	Gln	Glu	Phe	Met	Ile	Leu	Schilling & Overall, 2008
Gamma-glutamyl hydrolase	Q92820		peptide-Glu278+Ala-peptide	N	MS	Phe	Val	Asn	Glu	Ala	Arg	Lys	Asn	Vidmar et al., 2017
General transcription factor IIF subunit 2	P13984		peptide-Glu238+Tyr-peptide	N	MS	Leu	Lys	Pro	Glu	Tyr	Arg	His	Tyr	Vidmar et al., 2017
General vesicular transport factor p115	O60763		peptide-Glu793+Leu-peptide	N	MS	Leu	Lys	Gln	Glu	Leu	Ala	Thr	Leu	Vidmar et al., 2017
General vesicular transport factor p115 isoform 2	O60763-2	1-973	peptide-Glu19+Ala-peptide	N	MS	Gln	His	Thr	Glu	Ala	Glu	Thr	Ile	Schilling & Overall, 2008
Glia maturation factor beta	P60983		peptide-Glu122+Ile-peptide	N	MS	Lys	Val	Phe	Glu	Ile	Arg	Asn	Thr	Vidmar et al., 2017
glucose-6-phosphate isomerase	P06744	466-481	VFE+GNRPTNSIVFTK	N	MS	-	Val	Phe	Glu	Gly	Asn	Arg	Pro	Schilling & Overall, 2008
glucose-6-phosphate isomerase	P06744	524-550	peptide-Glu528+Leu-peptide	N	MS	Ile	Glu	Pro	Glu	Leu	Asp	Gly	Ser	Schilling & Overall, 2008
glucose-6-phosphate isomerase	P06744	2-558	peptide-Glu554+Ala-peptide	N	MS	Gln	Gln	Arg	Glu	Ala	Arg	Val	Gln	Schilling & Overall, 2008
glucose-6-phosphate isomerase	P06744	2-558	peptide-Glu255+Phe-peptide	N	MS	Lys	Val	Lys	Glu	Phe	Gly	Ile	Asp	Schilling & Overall, 2008
glucose-6-phosphate isomerase	P06744	2-558	peptide-Glu202+Ser-peptide	N	MS	Leu	Asn	Pro	Glu	Ser	Ser	Leu	Phe	Schilling & Overall, 2008
glucose-6-phosphate isomerase	P06744	2-558	peptide-Glu19+His-peptide	N	MS	Trp	Tyr	Arg	Glu	His	Arg	Ser	Glu	Schilling & Overall, 2008
Glucose-6-phosphate isomerase	P06744		peptide-Glu448+Leu-peptide	N	MS	Ala	Arg	Lys	Glu	Leu	Gln	Ala	Ala	Vidmar et al., 2017
Glucose-6-phosphate isomerase	P06744		peptide-Glu227+Trp-peptide	N	MS	Thr	Ala	Lys	Glu	Trp	Phe	Leu	Gln	Vidmar et al., 2017
Glucose-6-phosphate isomerase	P06744		peptide-Glu516+Leu-peptide	N	MS	Trp	Gly	Val	Glu	Leu	Gly	Lys	Gln	Vidmar et al., 2017
Glucose-6-phosphate isomerase	P06744		peptide-Glu460+Arg-peptide	N	MS	Glu	Asp	Leu	Glu	Arg	Leu	Leu	Pro	Vidmar et al., 2017
Glucosidase 2 subunit beta	P14314		peptide-Ala14+Val-peptide	N	MS	Met	Cys	Trp	Ala	Val	Glu	Val	Lys	Vidmar et al., 2017
Glucosidase 2 subunit beta	P14314		peptide-Glu381+Arg-peptide	N	MS	Glu	Glu	Ala	Glu	Arg	Ser	Leu	Lys	Vidmar et al., 2017
Glucosidase 2 subunit beta	P14314		peptide-Glu16+Val-peptide	N	MS	Trp	Ala	Val	Glu	Val	Lys	Arg	Pro	Vidmar et al., 2017
Glucosidase 2 subunit beta	P14314		peptide-Glu200+Gln-peptide	N	MS	Leu	Trp	Glu	Glu	Gln	Leu	Ala	Ala	Vidmar et al., 2017
Glucosidase 2 subunit beta	P14314		peptide-Glu136+Gly-peptide	N	MS	Val	Thr	Arg	Glu	Gly	Phe	Arg	Leu	Vidmar et al., 2017
Glucosidase 2 subunit beta	P14314		peptide-Glu372+Ala-peptide	N	MS	Ala	Ala	Gln	Glu	Ala	Arg	Asn	Lys	Vidmar et al., 2017
Glucosidase 2 subunit beta	P14314		peptide-Asp264+Ala-peptide	N	MS	Thr	Gln	Thr	Asp	Ala	Thr	Ser	Phe	Vidmar et al., 2017
Glucosidase 2 subunit beta	P14314		peptide-Glu161+Leu-peptide	N	MS	Lys	Leu	Ile	Glu	Leu	Gln	Ala	Gly	Vidmar et al., 2017
Glucosidase 2 subunit beta	P14314		peptide-Glu174+Met-peptide	N	MS	Asp	Gln	Val	Glu	Met	Leu	Arg	Thr	Vidmar et al., 2017
Glucosidase 2 subunit beta	P14314		peptide-Glu233+Leu-peptide	N	MS	Ser	Val	Thr	Glu	Leu	Gln	Thr	His	Vidmar et al., 2017
Glucosidase 2 subunit beta	P14314		peptide-Glu199+Glu-peptide	N	MS	Lys	Leu	Trp	Glu	Glu	Gln	Leu	Ala	Vidmar et al., 2017
Glucosidase 2 subunit beta	P14314		peptide-Glu488+Thr-peptide	N	MS	Cys	Gly	Lys	Glu	Thr	Met	Val	Thr	Vidmar et al., 2017
glutamate dehydrogenase 1 variant	Q59FQ4	1-299	peptide-Glu264+Gly-peptide	N	MS	Lys	Pro	Tyr	Glu	Gly	Ser	Ile	Leu	Schilling & Overall, 2008
Glutamate dehydrogenase 1, mitochondrial	P00367		peptide-Glu208+Leu-peptide	N	MS	Phe	Thr	Met	Glu	Leu	Ala	Lys	Lys	Vidmar et al., 2017
Glutamate dehydrogenase 1, mitochondrial	P00367		peptide-Glu349+Asp-peptide	N	MS	Lys	Glu	Leu	Glu	Asp	Phe	Lys	Leu	Vidmar et al., 2017
Glutamate dehydrogenase 1, mitochondrial	P00367		peptide-Glu197+Leu-peptide	N	MS	Thr	Asp	Asn	Glu	Leu	Glu	Lys	Ile	Vidmar et al., 2017
Glutamate dehydrogenase 1, mitochondrial	P00367		peptide-Glu71+Gly-peptide	N	MS	Lys	Met	Val	Glu	Gly	Phe	Phe	Asp	Vidmar et al., 2017
Glutamate dehydrogenase 1, mitochondrial	P00367		peptide-Glu82+Asp-peptide	N	MS	Ser	Ile	Val	Glu	Asp	Lys	Leu	Val	Vidmar et al., 2017
glutamate dehydrogenase 1, mitochondrial precursor	P00367	54-558	peptide-Glu368+Gly-peptide	N	MS	Lys	Pro	Tyr	Glu	Gly	Ser	Ile	Leu	Schilling & Overall, 2008
glutamate dehydrogenase 2, mitochondrial precursor	P49448	54-558	peptide-Glu368+Gly-peptide	N	MS	Lys	Pro	Tyr	Glu	Gly	Ser	Ile	Leu	Schilling & Overall, 2008
glutamine synthetase	P15104	299-319	LTGFHE+TSNINDFSAGVANR	N	MS	Gly	Phe	His	Glu	Thr	Ser	Asn	Ile	Schilling & Overall, 2008
glutamyl bond			peptide-Glu+peptide	N		-	-	NPe	Glu	CPe	-	-	-	Stennicke & Breddam, 2004
Glutaredoxin-3	O76003		peptide-Glu81+Ile-peptide	N	MS	Glu	Lys	Tyr	Glu	Ile	Ser	Ser	Val	Vidmar et al., 2017
Glutaredoxin-3	O76003		peptide-Glu326+Leu-peptide	N	MS	Glu	Asn	Gly	Glu	Leu	Leu	Pro	Ile	Vidmar et al., 2017
Glutaredoxin-3	O76003		peptide-Glu55+Leu-peptide	N	MS	Val	Met	Ala	Glu	Leu	Ala	Lys	Glu	Vidmar et al., 2017
Glutaredoxin-related protein 5, mitochondrial	Q86SX6		peptide-Glu137+Leu-peptide	N	MS	Leu	Val	Glu	Glu	Leu	Lys	Lys	Leu	Vidmar et al., 2017
Glutathione S-transferase omega-1	P78417		peptide-Glu118+Leu-peptide	N	MS	Met	Ile	Leu	Glu	Leu	Phe	Ser	Lys	Vidmar et al., 2017
Glutathione S-transferase P	P09211		peptide-Glu198+Tyr-peptide	N	MS	Ala	Ser	Pro	Glu	Tyr	Val	Asn	Leu	Vidmar et al., 2017
glutathione synthetase	P48637	1-474	peptide-Glu391+Arg-peptide	N	MS	Asp	Ser	Glu	Glu	Arg	Ala	Ser	Tyr	Schilling & Overall, 2008
Glutathione synthetase	P48637		peptide-Glu29+Gly-peptide	N	MS	Ala	Leu	Ala	Glu	Gly	Val	Leu	Leu	Vidmar et al., 2017
Glutathione synthetase	P48637		peptide-Glu353+Ala-peptide	N	MS	Ala	Ile	Ala	Glu	Ala	Leu	Ala	Ala	Vidmar et al., 2017
Glutathione synthetase	P48637		peptide-Glu17+Leu-peptide	N	MS	Gln	Leu	Glu	Glu	Leu	Ala	Arg	Gln	Vidmar et al., 2017
glyceraldehyde-3-phosphate dehydrogenase	P04406	271-309	peptide-Asp296+Ala-peptide	N	MS	Ser	Thr	Phe	Asp	Ala	Gly	Ala	Gly	Schilling & Overall, 2008
glyceraldehyde-3-phosphate dehydrogenase	P04406	162-186	peptide-Glu172+Gly-peptide	N	MS	Gly	Ile	Val	Glu	Gly	Leu	Met	Thr	Schilling & Overall, 2008
glyceraldehyde-3-phosphate dehydrogenase	P04406	118-145	peptide-Glu138+Lys-peptide	N	MS	Val	Asn	His	Glu	Lys	Tyr	Asp	Asn	Schilling & Overall, 2008
glyceraldehyde-3-phosphate dehydrogenase	P04406	323-334	VVD+LMAHMASK	N	MS	-	Val	Val	Asp	Leu	Met	Ala	His	Schilling & Overall, 2008
glyceraldehyde-3-phosphate dehydrogenase	P04406	86-107	peptide-Glu97+Ser-peptide	N	MS	Tyr	Val	Val	Glu	Ser	Thr	Gly	Val	Schilling & Overall, 2008
glyceraldehyde-3-phosphate dehydrogenase	P04406	2-335	peptide-Asp166+Asn-peptide	N	MS	Val	Ile	His	Asp	Asn	Phe	Gly	Ile	Schilling & Overall, 2008
glyceraldehyde-3-phosphate dehydrogenase	P04406	2-335	peptide-Asp198+Gly-peptide	N	MS	Leu	Trp	Arg	Asp	Gly	Arg	Gly	Ala	Schilling & Overall, 2008
glyceraldehyde-3-phosphate dehydrogenase	P04406	2-335	peptide-Glu223+Leu-peptide	N	MS	Val	Ile	Pro	Glu	Leu	Asn	Gly	Lys	Schilling & Overall, 2008
Glyceraldehyde-3-phosphate dehydrogenase	P04406		peptide-Glu63+Asn-peptide	N	MS	Val	Lys	Ala	Glu	Asn	Gly	Lys	Leu	Vidmar et al., 2017
Glyceraldehyde-3-phosphate dehydrogenase	P04406		peptide-Glu106+Lys-peptide	N	MS	Thr	Thr	Met	Glu	Lys	Ala	Gly	Ala	Vidmar et al., 2017
Glyceraldehyde-3-phosphate dehydrogenase	P04406		peptide-Asp81+Pro-peptide	N	MS	Gln	Glu	Arg	Asp	Pro	Ser	Lys	Ile	Vidmar et al., 2017
Glyceraldehyde-3-phosphate dehydrogenase	P04406		peptide-Gly212+Ala-peptide	N	MS	Ala	Ser	Thr	Gly	Ala	Ala	Lys	Ala	Vidmar et al., 2017
Glyceraldehyde-3-phosphate dehydrogenase	P04406		peptide-Ser321+Asn-peptide	N	MS	Phe	Gly	Tyr	Ser	Asn	Arg	Val	Val	Vidmar et al., 2017
Glyceraldehyde-3-phosphate dehydrogenase	P04406		peptide-Asp305+His-peptide	N	MS	Ala	Leu	Asn	Asp	His	Phe	Val	Lys	Vidmar et al., 2017
Glyceraldehyde-3-phosphate dehydrogenase	P04406		peptide-Asp50+Ser-peptide	N	MS	Phe	Gln	Tyr	Asp	Ser	Thr	His	Gly	Vidmar et al., 2017
Glyceraldehyde-3-phosphate dehydrogenase	P04406		peptide-Ser210+Thr-peptide	N	MS	Ile	Pro	Ala	Ser	Thr	Gly	Ala	Ala	Vidmar et al., 2017
Glyceraldehyde-3-phosphate dehydrogenase	P04406		peptide-Glu278+His-peptide	N	MS	Gly	Tyr	Thr	Glu	His	Gln	Val	Val	Vidmar et al., 2017
Glyceraldehyde-3-phosphate dehydrogenase	P04406		peptide-Glu79+Arg-peptide	N	MS	Ile	Phe	Gln	Glu	Arg	Asp	Pro	Ser	Vidmar et al., 2017
Glyceraldehyde-3-phosphate dehydrogenase	P04406		peptide-Glu317+Phe-peptide	N	MS	Tyr	Asp	Asn	Glu	Phe	Gly	Tyr	Ser	Vidmar et al., 2017
Glyceraldehyde-3-phosphate dehydrogenase	P04406		peptide-Ser122+Ala-peptide	N	MS	Val	Ile	Ile	Ser	Ala	Pro	Ser	Ala	Vidmar et al., 2017
Glycine cleavage system H protein, mitochondrial	P23434		peptide-Glu125+Ala-peptide	N	MS	Glu	Ile	Asn	Glu	Ala	Leu	Ala	Glu	Vidmar et al., 2017
Glycine--tRNA ligase	P41250		peptide-Glu177+Ile-peptide	N	MS	Gln	Ile	Leu	Glu	Ile	Asp	Cys	Thr	Vidmar et al., 2017
Glycine--tRNA ligase	P41250		peptide-Glu83+Asp-peptide	N	MS	Lys	Leu	Lys	Glu	Asp	Lys	Ala	Pro	Vidmar et al., 2017
Glycine--tRNA ligase	P41250		peptide-Glu730+Thr-peptide	N	MS	Glu	Gly	Gln	Glu	Thr	Gly	Lys	Lys	Vidmar et al., 2017
Glycine--tRNA ligase	P41250		peptide-Glu97+Leu-peptide	N	MS	Ala	Val	Ala	Glu	Leu	Lys	Ala	Arg	Vidmar et al., 2017
Glycine--tRNA ligase	P41250		peptide-Glu636+Ala-peptide	N	MS	Glu	Leu	Ser	Glu	Ala	Leu	Thr	Arg	Vidmar et al., 2017
glycogen phosphorylase, liver form	P06737	192-206	SRPE+FMLPVHFYGK	N	MS	Ser	Arg	Pro	Glu	Phe	Met	Leu	Pro	Schilling & Overall, 2008
glycyl-tRNA synthetase beta subunit	P00961	2-689	peptide-Glu404+Phe-peptide	N	MS	Met	Val	Phe	Glu	Phe	Thr	Asp	Thr	Timmer et al., 2009
Glycylpeptide N-tetradecanoyltransferase 1	P30419		peptide-Glu97+Leu-peptide	N	MS	Lys	Ala	Ile	Glu	Leu	Phe	Ser	Val	Vidmar et al., 2017
Glyoxalase domain-containing protein 4	Q9HC38		peptide-Glu267+Ile-peptide	N	MS	Asp	Gly	His	Glu	Ile	Cys	Phe	Val	Vidmar et al., 2017
Glyoxalase domain-containing protein 4	Q9HC38		peptide-Glu285+Gly-peptide	N	MS	Met	Asp	Pro	Glu	Gly	Ser	Lys	Leu	Vidmar et al., 2017
Glyoxalase domain-containing protein 4	Q9HC38		peptide-Glu301+Trp-peptide	N	MS	Lys	Ser	Asp	Glu	Trp	Phe	Ala	Lys	Vidmar et al., 2017
Glyoxylate reductase/hydroxypyruvate reductase	Q9UBQ7		peptide-Glu30+Val-peptide	N	MS	Ala	Asp	Cys	Glu	Val	Glu	Gln	Trp	Vidmar et al., 2017
GMP synthase [glutamine-hydrolyzing]	P49915	145-165	EE+VVLLTHGDSVDKVADGFK	N	MS	-	-	Glu	Glu	Val	Val	Leu	Leu	Schilling & Overall, 2008
Golgi integral membrane protein 4	O00461		peptide-Glu432+Ala-peptide	N	MS	Glu	His	Gln	Glu	Ala	Leu	His	Gln	Vidmar et al., 2017
Golgi integral membrane protein 4	O00461		peptide-Glu448+Gln-peptide	N	MS	Arg	Gln	Gln	Glu	Gln	Gln	Gln	Gln	Vidmar et al., 2017
Golgi reassembly-stacking protein 2	Q9H8Y8		peptide-Glu157+Ala-peptide	N	MS	Glu	Thr	His	Glu	Ala	Lys	Pro	Leu	Vidmar et al., 2017
Golgi to ER traffic protein 4 homolog	Q7L5D6		peptide-Glu11+Ser-peptide	N	MS	Ala	Glu	Gln	Glu	Ser	Ala	Arg	Asn	Vidmar et al., 2017
Golgin subfamily A member 4	Q13439		peptide-Glu695+Val-peptide	N	MS	Glu	Leu	Ser	Glu	Val	Leu	Lys	Ala	Vidmar et al., 2017
Golgin subfamily A member 4	Q13439		peptide-Glu706+Leu-peptide	N	MS	Leu	Glu	Glu	Glu	Leu	Ser	Val	Leu	Vidmar et al., 2017
golgin subfamily B member 1	Q14789	1-3259	peptide-Glu15+Leu-peptide	N	MS	Val	Leu	His	Glu	Leu	Ser	Gly	Asp	Schilling & Overall, 2008
Growth arrest and DNA damage-inducible proteins-interacting protein 1	Q8TAE8		peptide-Glu200+Ala-peptide	N	MS	Arg	Lys	Lys	Glu	Ala	Arg	Ala	Ala	Vidmar et al., 2017
Growth arrest and DNA damage-inducible proteins-interacting protein 1	Q8TAE8		peptide-Glu177+Leu-peptide	N	MS	Arg	Phe	Gln	Glu	Leu	Leu	Gln	Asp	Vidmar et al., 2017
GrpE protein homolog 1, mitochondrial	Q9HAV7		peptide-Glu148+Val-peptide	N	MS	Val	Met	Thr	Glu	Val	Gln	Ile	Gln	Vidmar et al., 2017
GrpE protein homolog 1, mitochondrial	Q9HAV7		peptide-Glu86+Asn-peptide	N	MS	Ala	Asp	Thr	Glu	Asn	Leu	Arg	Gln	Vidmar et al., 2017
GrpE protein homolog 1, mitochondrial	Q9HAV7		peptide-Glu76+Lys-peptide	N	MS	Glu	Thr	Val	Glu	Lys	Tyr	Lys	Arg	Vidmar et al., 2017
GTP-binding nuclear protein Ran	P62826	110-123	VCE+NIPIVLCGNK	N	MS	-	Val	Cys	Glu	Asn	Ile	Pro	Ile	Schilling & Overall, 2008
GTP-binding protein lepA	P60785	1-599	peptide-Glu125+Val-peptide	N	MS	Met	Asp	Leu	Glu	Val	Val	Pro	Val	Timmer et al., 2009
GTP-binding protein Rheb	Q15382		peptide-Glu152+Asn-peptide	N	MS	Ser	Ala	Lys	Glu	Asn	Gln	Thr	Ala	Vidmar et al., 2017
GTP-dependent nucleic acid-binding protein engD	P0ABU2	2-363	peptide-Glu161+Leu-peptide	N	MS	Ala	Lys	Ala	Glu	Leu	Ala	Val	Leu	Timmer et al., 2009
GTPase-activating protein and VPS9 domain-containing protein 1	Q14C86		peptide-Glu616+His-peptide	N	MS	Gln	Leu	Leu	Glu	His	Glu	Gln	Ala	Vidmar et al., 2017
GTPase-activating protein and VPS9 domain-containing protein 1	Q14C86		peptide-Glu822+Ser-peptide	N	MS	Ser	Gln	Ser	Glu	Ser	Leu	Leu	Ala	Vidmar et al., 2017
Guanidinoacetate N-methyltransferase	Q14353		peptide-Glu43+Arg-peptide	N	MS	Pro	Val	Met	Glu	Arg	Trp	Glu	Thr	Vidmar et al., 2017
Guanine nucleotide-binding protein subunit alpha-14	O95837		peptide-Phe268+Leu-peptide	N	MS	Val	Ile	Leu	Phe	Leu	Asn	Lys	Lys	Vidmar et al., 2017
H2A histone family, member J	Q9BTM1	100-119	VTIAQ+GGVLPNIQAVLLPK	N	MS	Thr	Ile	Ala	Gln	Gly	Gly	Val	Leu	Schilling & Overall, 2008
H2A histone family, member J	Q9BTM1	100-119	VTIA+QGGVLPNIQAVLLPK	N	MS	Val	Thr	Ile	Ala	Gln	Gly	Gly	Val	Schilling & Overall, 2008
H2A histone family, member Y isoform 2 variant	Q59FH0	71-91	NGPLE+VAGAAVSAGHGLPAK	N	MS	Gly	Pro	Leu	Glu	Val	Ala	Gly	Ala	Schilling & Overall, 2008
heat repeat-containing protein 1	Q9H583	1-2144	peptide-Glu78+Arg-peptide	N	MS	Lys	Thr	Leu	Glu	Arg	Ser	Val	Gln	Schilling & Overall, 2008
heat shock 70 kDa protein 1	P08107	361-384	peptide-Gly372+Ala-peptide	N	MS	Val	Ala	Tyr	Gly	Ala	Ala	Val	Gln	Schilling & Overall, 2008
heat shock 70 kDa protein 1	P08107	159-171	D+AGVIAGLNVLR	N	MS	-	-	-	Asp	Ala	Gly	Val	Ile	Schilling & Overall, 2008
heat shock 70 kDa protein 1	P08107	128-155	peptide-Glu132+Ala-peptide	N	MS	Glu	Ile	Ala	Glu	Ala	Tyr	Leu	Gly	Schilling & Overall, 2008
heat shock 70 kDa protein 1	P08107	597-628	peptide-Glu600+Gln-peptide	N	MS	-	Glu	Leu	Glu	Gln	Val	Cys	Asn	Schilling & Overall, 2008
heat shock 70 kDa protein 1	P08107	384-415	peptide-Glu404+Thr-peptide	N	MS	Leu	Gly	Leu	Glu	Thr	Ala	Gly	Gly	Schilling & Overall, 2008
heat shock 70 kDa protein 1	P08107	573-589	CQE+VISWLDANTLAEK	N	MS	-	Cys	Gln	Glu	Val	Ile	Ser	Trp	Schilling & Overall, 2008
heat shock 70 kDa protein 1	P08107	1-641	peptide-Glu27+Ile-peptide	N	MS	Gly	Lys	Val	Glu	Ile	Ile	Ala	Asn	Schilling & Overall, 2008
heat shock 70 kDa protein 1	P08107	1-641	peptide-Glu192+Arg-peptide	N	MS	Gly	Lys	Gly	Glu	Arg	Asn	Val	Leu	Schilling & Overall, 2008
heat shock 70 kDa protein 1	P08107	1-641	peptide-Glu556+Gly-peptide	N	MS	Val	Glu	Asp	Glu	Gly	Leu	Lys	Gly	Schilling & Overall, 2008
heat shock 70 kDa protein 1	P08107	1-641	peptide-Glu386+Asn-peptide	N	MS	Asp	Lys	Ser	Glu	Asn	Val	Gln	Asp	Schilling & Overall, 2008
heat shock 70 kDa protein 1	P08107	1-641	peptide-Asp506+Lys-peptide	N	MS	Ile	Thr	Asn	Asp	Lys	Gly	Arg	Leu	Schilling & Overall, 2008
heat shock 70 kDa protein 1	P08107	1-641	peptide-Glu591+Phe-peptide	N	MS	Glu	Lys	Asp	Glu	Phe	Glu	His	Lys	Schilling & Overall, 2008
heat shock 70 kDa protein 1	P08107	1-641	peptide-Asp69+Ala-peptide	N	MS	Thr	Val	Phe	Asp	Ala	Lys	Arg	Leu	Schilling & Overall, 2008
heat shock 70 kDa protein 1L	P34931	363-386	peptide-Gly374+Ala-peptide	N	MS	Val	Ala	Tyr	Gly	Ala	Ala	Val	Gln	Schilling & Overall, 2008
heat shock 70 kDa protein 1L	P34931	161-173	D+AGVIAGLNVLR	N	MS	-	-	-	Asp	Ala	Gly	Val	Ile	Schilling & Overall, 2008
heat shock 70 kDa protein 1L	P34931	389-417	peptide-Glu406+Thr-peptide	N	MS	Leu	Gly	Leu	Glu	Thr	Ala	Gly	Gly	Schilling & Overall, 2008
heat shock 70 kDa protein 1L	P34931	1-641	peptide-Glu29+Ile-peptide	N	MS	Gly	Lys	Val	Glu	Ile	Ile	Ala	Asn	Schilling & Overall, 2008
heat shock 70 kDa protein 1L	P34931	1-641	peptide-Glu388+Lys-peptide	N	MS	Asp	Lys	Ser	Glu	Lys	Val	Gln	Asp	Schilling & Overall, 2008
heat shock 70 kDa protein 4	P34932	84-102	SNLAYD+IVQLPTGLTGIK	N	MS	Leu	Ala	Tyr	Asp	Ile	Val	Gln	Leu	Schilling & Overall, 2008
heat shock 70 kDa protein 4	P34932	773-789	E+LTSTCSPIISKPKPK	N	MS	-	-	-	Glu	Leu	Thr	Ser	Thr	Schilling & Overall, 2008
heat shock 70 kDa protein 4	P34932	1-840	peptide-Glu796+Gln-peptide	N	MS	Pro	Lys	Glu	Glu	Gln	Lys	Asn	Ala	Schilling & Overall, 2008
heat shock 70 kDa protein 4	P34932	1-840	peptide-Glu767+Ile-peptide	N	MS	Lys	Ser	Lys	Glu	Ile	Glu	Ala	Lys	Schilling & Overall, 2008
heat shock 70 kDa protein 4	P34932	1-840	peptide-Glu412+Gly-peptide	N	MS	Pro	Ala	Glu	Glu	Gly	Ser	Ser	Asp	Schilling & Overall, 2008
heat shock 70 kDa protein 4L	O95757	1-839	peptide-Glu326+Gln-peptide	N	MS	Ala	Val	Met	Glu	Gln	Ala	Asn	Leu	Schilling & Overall, 2008
heat shock 70 kDa protein 4L	O95757	1-839	peptide-Glu770+Ile-peptide	N	MS	Lys	Val	Ser	Glu	Ile	Val	Ala	Lys	Schilling & Overall, 2008
heat shock 70kDa protein 4	Q9BUK9	84-102	SNLAYD+IVQLPTGLTGIK	N	MS	Leu	Ala	Tyr	Asp	Ile	Val	Gln	Leu	Schilling & Overall, 2008
heat shock 70kDa protein 8 isoform 1 variant	Q53GZ6	112-126	SFYPEE+VSSMVLTK	N	MS	Tyr	Pro	Glu	Glu	Val	Ser	Ser	Met	Schilling & Overall, 2008
heat shock 70kDa protein 8 isoform 1 variant	Q53GZ6	1-646	peptide-Glu27+Ile-peptide	N	MS	Gly	Lys	Val	Glu	Ile	Ile	Ala	Asn	Schilling & Overall, 2008
heat shock 70kDa protein 8 isoform 1 variant	Q53GZ6	1-646	peptide-Glu498+Asn-peptide	N	MS	Thr	Gly	Lys	Glu	Asn	Lys	Ile	Thr	Schilling & Overall, 2008
heat shock 70kDa protein 8 isoform 1 variant	Q53GZ6	1-646	peptide-Asp86+Met-peptide	N	MS	Val	Gln	Ser	Asp	Met	Lys	His	Trp	Schilling & Overall, 2008
heat shock 70kDa protein 8 isoform 2 variant	Q53HF2	112-126	SFYPEE+VSSMVLTK	N	MS	Tyr	Pro	Glu	Glu	Val	Ser	Ser	Met	Schilling & Overall, 2008
heat shock 70kDa protein 8 isoform 2 variant	Q53HF2	1-493	peptide-Glu27+Ile-peptide	N	MS	Gly	Lys	Val	Glu	Ile	Ile	Ala	Asn	Schilling & Overall, 2008
heat shock 70kDa protein 8 isoform 2 variant	Q53HF2	1-493	peptide-Asp86+Met-peptide	N	MS	Val	Gln	Ser	Asp	Met	Lys	His	Trp	Schilling & Overall, 2008
heat shock protein 90Bd	Q58FF6	1-505	peptide-Glu33+Ser-peptide	N	MS	Ile	Arg	Tyr	Glu	Ser	Leu	Thr	Asp	Schilling & Overall, 2008
heat shock protein 90Bd	Q58FF6	1-505	peptide-Glu13+Ile-peptide	N	MS	Ser	Asn	Lys	Glu	Ile	Phe	Leu	Gln	Schilling & Overall, 2008
heat shock protein beta	O14942	7-20	E+SLTDPSKLDSGK	N	MS	-	-	-	Glu	Ser	Leu	Thr	Asp	Schilling & Overall, 2008
heat shock protein beta	O14942	1-130	peptide-Glu66+Ala-peptide	N	MS	Ala	Phe	Met	Glu	Ala	Leu	Gln	Leu	Schilling & Overall, 2008
heat shock protein HSP 90-beta	P08238	56-69	E+SLTDPSKLDSGK	N	MS	-	-	-	Glu	Ser	Leu	Thr	Asp	Schilling & Overall, 2008
heat shock protein HSP 90-beta	P08238	2-724	peptide-Glu115+Ala-peptide	N	MS	Ala	Phe	Met	Glu	Ala	Leu	Gln	Ala	Schilling & Overall, 2008
heat shock protein HSP 90-beta	P08238	2-724	peptide-Glu37+Ile-peptide	N	MS	Ser	Asn	Lys	Glu	Ile	Phe	Leu	Arg	Schilling & Overall, 2008
heat shock protein HSP 90-beta	P08238	2-724	peptide-Glu187+Asp-peptide	N	MS	His	Leu	Lys	Glu	Asp	Gln	Thr	Glu	Schilling & Overall, 2008
heat shock-related 70 kDa protein 2	P54652	1-639	peptide-Glu28+Ile-peptide	N	MS	Gly	Lys	Val	Glu	Ile	Ile	Ala	Asn	Schilling & Overall, 2008
Heat shock 70 kDa protein 1B	P0DMV9		peptide-Glu576+Val-peptide	N	MS	Lys	Cys	Gln	Glu	Val	Ile	Ser	Trp	Vidmar et al., 2017
Heat shock 70 kDa protein 1B	P0DMV9		peptide-Gly623+Ala-peptide	N	MS	Gly	Gly	Phe	Gly	Ala	Gln	Gly	Pro	Vidmar et al., 2017
Heat shock 70 kDa protein 1B	P0DMV9		peptide-Glu543+Ser-peptide	N	MS	Asn	Ala	Leu	Glu	Ser	Tyr	Ala	Phe	Vidmar et al., 2017
Heat shock 70 kDa protein 1B	P0DMV9		peptide-Glu521+Ala-peptide	N	MS	Met	Val	Gln	Glu	Ala	Glu	Lys	Tyr	Vidmar et al., 2017
Heat shock 70 kDa protein 1B	P0DMV9		peptide-Glu444+Gly-peptide	N	MS	Gln	Val	Tyr	Glu	Gly	Glu	Arg	Ala	Vidmar et al., 2017
Heat shock 70 kDa protein 1B	P0DMV9		peptide-Glu564+Ala-peptide	N	MS	Lys	Ile	Ser	Glu	Ala	Asp	Lys	Lys	Vidmar et al., 2017
Heat shock 70 kDa protein 4	P34932		peptide-Glu499+Val-peptide	N	MS	Ser	Leu	Val	Glu	Val	His	Lys	Ser	Vidmar et al., 2017
Heat shock 70 kDa protein 4	P34932		peptide-Glu701+Leu-peptide	N	MS	Leu	Phe	Glu	Glu	Leu	Gly	Lys	Gln	Vidmar et al., 2017
Heat shock 70 kDa protein 4	P34932		peptide-Glu743+Trp-peptide	N	MS	Glu	Ala	Met	Glu	Trp	Met	Asn	Asn	Vidmar et al., 2017
Heat shock 70 kDa protein 4	P34932		peptide-Glu637+Lys-peptide	N	MS	Gly	Glu	Tyr	Glu	Lys	Phe	Val	Ser	Vidmar et al., 2017
Heat shock 70 kDa protein 4	P34932		peptide-Glu418+Val-peptide	N	MS	Ser	Asp	Cys	Glu	Val	Phe	Ser	Lys	Vidmar et al., 2017
Heat shock 70 kDa protein 4	P34932		peptide-Glu601+Gly-peptide	N	MS	Ile	Glu	Asn	Glu	Gly	Lys	Met	Ile	Vidmar et al., 2017
Heat shock 70 kDa protein 4	P34932		peptide-Glu740+Ala-peptide	N	MS	Ser	Thr	Asn	Glu	Ala	Met	Glu	Trp	Vidmar et al., 2017
Heat shock 70 kDa protein 4	P34932		peptide-Glu361+Leu-peptide	N	MS	Phe	Gly	Lys	Glu	Leu	Ser	Thr	Thr	Vidmar et al., 2017
Heat shock 70 kDa protein 4	P34932		peptide-Glu289+Cys-peptide	N	MS	Leu	Ser	Ile	Glu	Cys	Phe	Met	Asn	Vidmar et al., 2017
Heat shock 70 kDa protein 4	P34932		peptide-Glu613+Arg-peptide	N	MS	Leu	Glu	Lys	Glu	Arg	Asn	Asp	Ala	Vidmar et al., 2017
Heat shock 70 kDa protein 4	P34932		peptide-Glu352+Lys-peptide	N	MS	Ala	Val	Lys	Glu	Lys	Ile	Ser	Lys	Vidmar et al., 2017
Heat shock 70 kDa protein 4	P34932		peptide-Glu611+Lys-peptide	N	MS	Asp	Lys	Leu	Glu	Lys	Glu	Arg	Asn	Vidmar et al., 2017
Heat shock 70 kDa protein 4	P34932		peptide-Glu339+Ile-peptide	N	MS	Tyr	Ala	Val	Glu	Ile	Val	Gly	Gly	Vidmar et al., 2017
Heat shock 70 kDa protein 4	P34932		peptide-Glu677+Leu-peptide	N	MS	Lys	Leu	Ala	Glu	Leu	Lys	Asn	Leu	Vidmar et al., 2017
Heat shock 70 kDa protein 4	P34932		peptide-Glu627+Met-peptide	N	MS	Tyr	Val	Tyr	Glu	Met	Arg	Asp	Lys	Vidmar et al., 2017
Heat shock 70 kDa protein 4	P34932		peptide-Glu691+Ser-peptide	N	MS	Arg	Phe	Gln	Glu	Ser	Glu	Glu	Arg	Vidmar et al., 2017
Heat shock 70 kDa protein 4	P34932		peptide-Glu308+Met-peptide	N	MS	Lys	Phe	Leu	Glu	Met	Cys	Asn	Asp	Vidmar et al., 2017
Heat shock 70 kDa protein 4	P34932		peptide-Glu520+Lys-peptide	N	MS	Lys	Glu	Glu	Glu	Lys	Met	Gln	Val	Vidmar et al., 2017
Heat shock 70 kDa protein 4	P34932		peptide-Glu582+Asn-peptide	N	MS	Leu	Pro	Ile	Glu	Asn	Gln	Leu	Leu	Vidmar et al., 2017
Heat shock 70 kDa protein 4	P34932		peptide-Glu533+Gln-peptide	N	MS	His	Val	Glu	Glu	Gln	Gln	Gln	Gln	Vidmar et al., 2017
Heat shock 70 kDa protein 4L	O95757		peptide-Glu659+Asn-peptide	N	MS	Glu	Asp	Thr	Glu	Asn	Trp	Leu	Tyr	Vidmar et al., 2017
Heat shock 70 kDa protein 4L	O95757		peptide-Glu735+Lys-peptide	N	MS	Thr	Glu	Met	Glu	Lys	Val	Glu	Lys	Vidmar et al., 2017
Heat shock 70 kDa protein 4L	O95757		peptide-Glu626+Tyr-peptide	N	MS	Ala	Val	Glu	Glu	Tyr	Val	Tyr	Asp	Vidmar et al., 2017
Heat shock 70 kDa protein 4L	O95757		peptide-Glu504+Gly-peptide	N	MS	Gln	Asn	Leu	Glu	Gly	Asp	His	Ser	Vidmar et al., 2017
Heat shock 70 kDa protein 6	P17066		peptide-Ala500+Asn-peptide	N	MS	Thr	Gly	Lys	Ala	Asn	Lys	Ile	Thr	Vidmar et al., 2017
Heat shock cognate 71 kDa protein	P11142		peptide-Glu218+Val-peptide	N	MS	Gly	Ile	Phe	Glu	Val	Lys	Ser	Thr	Vidmar et al., 2017
Heat shock cognate 71 kDa protein	P11142		peptide-Glu110+Thr-peptide	N	MS	Tyr	Lys	Gly	Glu	Thr	Lys	Ser	Phe	Vidmar et al., 2017
Heat shock cognate 71 kDa protein	P11142		peptide-Glu498+Asn-peptide	N	MS	Thr	Gly	Lys	Glu	Asn	Lys	Ile	Thr	Vidmar et al., 2017
Heat shock cognate 71 kDa protein	P11142		peptide-Gly372+Ala-peptide	N	MS	Val	Ala	Tyr	Gly	Ala	Ala	Val	Gln	Vidmar et al., 2017
Heat shock cognate 71 kDa protein	P11142		peptide-Glu521+Ala-peptide	N	MS	Met	Val	Gln	Glu	Ala	Glu	Lys	Tyr	Vidmar et al., 2017
Heat shock cognate 71 kDa protein	P11142		peptide-Glu523+Lys-peptide	N	MS	Gln	Glu	Ala	Glu	Lys	Tyr	Lys	Ala	Vidmar et al., 2017
Heat shock cognate 71 kDa protein	P11142		peptide-Glu543+Ser-peptide	N	MS	Asn	Ser	Leu	Glu	Ser	Tyr	Ala	Phe	Vidmar et al., 2017
Heat shock cognate 71 kDa protein	P11142		peptide-Glu576+Ile-peptide	N	MS	Lys	Cys	Asn	Glu	Ile	Ile	Asn	Trp	Vidmar et al., 2017
Heat shock cognate 71 kDa protein	P11142		peptide-Glu244+Phe-peptide	N	MS	Phe	Ile	Ala	Glu	Phe	Lys	Arg	Lys	Vidmar et al., 2017
Heat shock cognate 71 kDa protein	P11142		peptide-Glu358+Leu-peptide	N	MS	Asn	Gly	Lys	Glu	Leu	Asn	Lys	Ser	Vidmar et al., 2017
Heat shock cognate 71 kDa protein	P11142		peptide-Glu528+Asp-peptide	N	MS	Tyr	Lys	Ala	Glu	Asp	Glu	Lys	Gln	Vidmar et al., 2017
Heat shock cognate 71 kDa protein	P11142		peptide-Glu446+Arg-peptide	N	MS	Tyr	Glu	Gly	Glu	Arg	Ala	Met	Thr	Vidmar et al., 2017
Heat shock cognate 71 kDa protein	P11142		peptide-Glu475+Val-peptide	N	MS	Pro	Gln	Ile	Glu	Val	Thr	Phe	Asp	Vidmar et al., 2017
Heat shock cognate 71 kDa protein	P11142		peptide-Glu530+Lys-peptide	N	MS	Ala	Glu	Asp	Glu	Lys	Gln	Arg	Asp	Vidmar et al., 2017
Heat shock cognate 71 kDa protein	P11142		peptide-Glu444+Gly-peptide	N	MS	Gln	Val	Tyr	Glu	Gly	Glu	Arg	Ala	Vidmar et al., 2017
Heat shock protein 105 kDa	Q92598		peptide-Glu515+Cys-peptide	N	MS	Ala	Asp	Met	Glu	Cys	Leu	Asn	Gln	Vidmar et al., 2017
Heat shock protein 105 kDa	Q92598		peptide-Glu370+Ala-peptide	N	MS	Asn	Ala	Asp	Glu	Ala	Val	Ala	Arg	Vidmar et al., 2017
Heat shock protein 105 kDa	Q92598		peptide-Glu718+Leu-peptide	N	MS	Met	Phe	Glu	Glu	Leu	Gly	Gln	Arg	Vidmar et al., 2017
Heat shock protein 105 kDa	Q92598		peptide-Glu391+Phe-peptide	N	MS	Lys	Val	Arg	Glu	Phe	Ser	Val	Thr	Vidmar et al., 2017
Heat shock protein 105 kDa	Q92598		peptide-Glu747+Met-peptide	N	MS	Asp	Glu	Ser	Glu	Met	Lys	Lys	Val	Vidmar et al., 2017
Heat shock protein 105 kDa	Q92598		peptide-Glu564+Asn-peptide	N	MS	Thr	Ser	Glu	Glu	Asn	Lys	Ile	Pro	Vidmar et al., 2017
Heat shock protein 105 kDa	Q92598		peptide-Glu312+Leu-peptide	N	MS	Leu	Cys	Ala	Glu	Leu	Leu	Gln	Lys	Vidmar et al., 2017
Heat shock protein 105 kDa	Q92598		peptide-Glu418+Val-peptide	N	MS	Gly	Val	His	Glu	Val	Phe	Ser	Arg	Vidmar et al., 2017
Heat shock protein 105 kDa	Q92598		peptide-Glu644+Phe-peptide	N	MS	Tyr	Val	Tyr	Glu	Phe	Arg	Asp	Lys	Vidmar et al., 2017
Heat shock protein 105 kDa	Q92598		peptide-Glu813+Arg-peptide	N	MS	Pro	Lys	Leu	Glu	Arg	Thr	Pro	Asn	Vidmar et al., 2017
Heat shock protein 105 kDa	Q92598		peptide-Glu708+Ala-peptide	N	MS	Arg	Phe	Gln	Glu	Ala	Glu	Glu	Arg	Vidmar et al., 2017
Heat shock protein 105 kDa	Q92598		peptide-Glu659+Gln-peptide	N	MS	Phe	Ile	Cys	Glu	Gln	Asp	His	Gln	Vidmar et al., 2017
Heat shock protein 105 kDa	Q92598		peptide-Glu694+Leu-peptide	N	MS	Lys	Leu	Glu	Glu	Leu	Met	Lys	Ile	Vidmar et al., 2017
Heat shock protein 105 kDa	Q92598		peptide-Glu760+Trp-peptide	N	MS	Glu	Val	Met	Glu	Trp	Met	Asn	Asn	Vidmar et al., 2017
Heat shock protein beta-1	P04792		peptide-Glu130+His-peptide	N	MS	Arg	Gln	Asp	Glu	His	Gly	Tyr	Ile	Vidmar et al., 2017
Heat shock protein beta-1	P04792		peptide-Glu87+Ile-peptide	N	MS	Gly	Val	Ser	Glu	Ile	Arg	His	Thr	Vidmar et al., 2017
Heat shock protein beta-1	P04792		peptide-Glu160+Gly-peptide	N	MS	Leu	Ser	Pro	Glu	Gly	Thr	Leu	Thr	Vidmar et al., 2017
Heat shock protein beta-1	P04792		peptide-Glu186+Ser-peptide	N	MS	Val	Thr	Phe	Glu	Ser	Arg	Ala	Gln	Vidmar et al., 2017
Heat shock protein beta-1	P04792		peptide-Glu178+Ile-peptide	N	MS	Gln	Ser	Asn	Glu	Ile	Thr	Ile	Pro	Vidmar et al., 2017
Heat shock protein HSP 90-alpha	P07900		peptide-Glu163+Ser-peptide	N	MS	Tyr	Ala	Trp	Glu	Ser	Ser	Ala	Gly	Vidmar et al., 2017
Heat shock protein HSP 90-alpha	P07900		peptide-Glu651+Ala-peptide	N	MS	Gln	Lys	Ala	Glu	Ala	Asp	Lys	Asn	Vidmar et al., 2017
Heat shock protein HSP 90-alpha	P07900		peptide-Glu497+Thr-peptide	N	MS	Ile	Thr	Gly	Glu	Thr	Lys	Asp	Gln	Vidmar et al., 2017
Heat shock protein HSP 90-alpha	P07900		peptide-Glu289+Leu-peptide	N	MS	Asp	Gln	Glu	Glu	Leu	Asn	Lys	Thr	Vidmar et al., 2017
Heat shock protein HSP 90-alpha	P07900		peptide-Glu547+Gly-peptide	N	MS	Val	Thr	Lys	Glu	Gly	Leu	Glu	Leu	Vidmar et al., 2017
Heat shock protein HSP 90-alpha	P07900		peptide-Glu42+Ile-peptide	N	MS	Ser	Asn	Lys	Glu	Ile	Phe	Leu	Arg	Vidmar et al., 2017
Heat shock protein HSP 90-alpha	P07900		peptide-Glu282+Lys-peptide	N	MS	Lys	Ile	Lys	Glu	Lys	Tyr	Ile	Asp	Vidmar et al., 2017
Heat shock protein HSP 90-alpha	P07900		peptide-Glu473+Met-peptide	N	MS	Ser	Gly	Asp	Glu	Met	Val	Ser	Leu	Vidmar et al., 2017
Heat shock protein HSP 90-alpha	P07900		peptide-Glu380+Tyr-peptide	N	MS	Leu	Ile	Pro	Glu	Tyr	Leu	Asn	Phe	Vidmar et al., 2017
Heat shock protein HSP 90-alpha	P07900		peptide-Glu644+Thr-peptide	N	MS	Ser	Ile	Ile	Glu	Thr	Leu	Arg	Gln	Vidmar et al., 2017
Heat shock protein HSP 90-alpha	P07900		peptide-Glu635+Ile-peptide	N	MS	Lys	His	Leu	Glu	Ile	Asn	Pro	Asp	Vidmar et al., 2017
Heat shock protein HSP 90-alpha	P07900		peptide-Glu714+Glu-peptide	N	MS	Ala	Val	Thr	Glu	Glu	Met	Pro	Pro	Vidmar et al., 2017
Heat shock protein HSP 90-alpha	P07900		peptide-Glu569+Asn-peptide	N	MS	Thr	Lys	Phe	Glu	Asn	Leu	Cys	Lys	Vidmar et al., 2017
Heat shock protein HSP 90-alpha	P07900		peptide-Glu527+Tyr-peptide	N	MS	Pro	Ile	Asp	Glu	Tyr	Cys	Val	Gln	Vidmar et al., 2017
Heat shock protein HSP 90-alpha	P07900		peptide-Glu62+Ser-peptide	N	MS	Ile	Arg	Tyr	Glu	Ser	Leu	Thr	Asp	Vidmar et al., 2017
Heat shock protein HSP 90-alpha	P07900		peptide-Glu715+Met-peptide	N	MS	Val	Thr	Glu	Glu	Met	Pro	Pro	Leu	Vidmar et al., 2017
Heat shock protein HSP 90-alpha	P07900		peptide-Glu611+Arg-peptide	N	MS	Ala	Asn	Met	Glu	Arg	Ile	Met	Lys	Vidmar et al., 2017
Heat shock protein HSP 90-alpha	P07900		peptide-Glu535+Phe-peptide	N	MS	Gln	Leu	Lys	Glu	Phe	Glu	Gly	Lys	Vidmar et al., 2017
Heat shock protein HSP 90-alpha	P07900		peptide-Glu461+Leu-peptide	N	MS	Lys	Leu	Ser	Glu	Leu	Leu	Arg	Tyr	Vidmar et al., 2017
Heat shock protein HSP 90-alpha	P07900		peptide-Glu47+Leu-peptide	N	MS	Phe	Leu	Arg	Glu	Leu	Ile	Ser	Asn	Vidmar et al., 2017
Heat shock protein HSP 90-alpha	P07900		peptide-Glu537+Gly-peptide	N	MS	Lys	Glu	Phe	Glu	Gly	Lys	Thr	Leu	Vidmar et al., 2017
Heat shock protein HSP 90-alpha	P07900		peptide-Glu25+Ile-peptide	N	MS	Phe	Gln	Ala	Glu	Ile	Ala	Gln	Leu	Vidmar et al., 2017
Heat shock protein HSP 90-beta	P08238		peptide-Glu274+Lys-peptide	N	MS	Lys	Ile	Lys	Glu	Lys	Tyr	Ile	Asp	Vidmar et al., 2017
Heat shock protein HSP 90-beta	P08238		peptide-Glu636+Thr-peptide	N	MS	Pro	Ile	Val	Glu	Thr	Leu	Arg	Gln	Vidmar et al., 2017
Heat shock protein HSP 90-beta	P08238		peptide-Glu200+Val-peptide	N	MS	Arg	Val	Lys	Glu	Val	Val	Lys	Lys	Vidmar et al., 2017
Heat shock protein HSP 90-beta	P08238		peptide-Glu603+Arg-peptide	N	MS	Ala	Asn	Met	Glu	Arg	Ile	Met	Lys	Vidmar et al., 2017
Heat shock protein HSP 90-beta	P08238		peptide-Glu431+Ala-peptide	N	MS	Lys	Phe	Tyr	Glu	Ala	Phe	Ser	Lys	Vidmar et al., 2017
Heat shock protein HSP 90-beta	P08238		peptide-Glu281+Leu-peptide	N	MS	Asp	Gln	Glu	Glu	Leu	Asn	Lys	Thr	Vidmar et al., 2017
Heat shock protein HSP 90-beta	P08238		peptide-Glu643+Ala-peptide	N	MS	Gln	Lys	Ala	Glu	Ala	Asp	Lys	Asn	Vidmar et al., 2017
Heat shock protein HSP 90-beta	P08238		peptide-Glu218+Lys-peptide	N	MS	Leu	Tyr	Leu	Glu	Lys	Glu	Arg	Glu	Vidmar et al., 2017
Heat shock protein HSP 90-beta	P08238		peptide-Glu478+Thr-peptide	N	MS	Arg	Met	Lys	Glu	Thr	Gln	Lys	Ser	Vidmar et al., 2017
Heat shock protein HSP 90-beta	P08238		peptide-Glu627+Ile-peptide	N	MS	Lys	His	Leu	Glu	Ile	Asn	Pro	Asp	Vidmar et al., 2017
Heat shock protein HSP 90-beta	P08238		peptide-Glu539+Gly-peptide	N	MS	Val	Thr	Lys	Glu	Gly	Leu	Glu	Leu	Vidmar et al., 2017
Heat shock protein HSP 90-beta	P08238		peptide-Glu489+Ser-peptide	N	MS	Ile	Thr	Gly	Glu	Ser	Lys	Glu	Gln	Vidmar et al., 2017
Heat shock protein HSP 90-beta	P08238		peptide-Glu453+Leu-peptide	N	MS	Arg	Leu	Ser	Glu	Leu	Leu	Arg	Tyr	Vidmar et al., 2017
Heat shock protein HSP 90-beta	P08238		peptide-Glu527+Phe-peptide	N	MS	Gln	Leu	Lys	Glu	Phe	Asp	Gly	Lys	Vidmar et al., 2017
Heat shock protein HSP 90-beta	P08238		peptide-Glu42+Leu-peptide	N	MS	Phe	Leu	Arg	Glu	Leu	Ile	Ser	Asn	Vidmar et al., 2017
heat shock protein HSP 90-beta 2, putative	Q58FF8	97-110	E+SLTDPSKLDSGK	N	MS	-	-	-	Glu	Ser	Leu	Thr	Asp	Schilling & Overall, 2008
heat shock protein HSP 90-beta 2, putative	Q58FF8	56-69	E+SLTDPSKLDSGK	N	MS	-	-	-	Glu	Ser	Leu	Thr	Asp	Schilling & Overall, 2008
heat shock protein HSP 90-beta 2, putative	Q58FF8	2-381	peptide-Glu37+Ile-peptide	N	MS	Ser	Asn	Lys	Glu	Ile	Phe	Leu	Trp	Schilling & Overall, 2008
Heme oxygenase 2	P30519		peptide-Glu236+Leu-peptide	N	MS	Ile	Phe	Asn	Glu	Leu	Asp	Gln	Ala	Vidmar et al., 2017
Heme oxygenase 2	P30519		peptide-Glu25+Asn-peptide	N	MS	Leu	Glu	Lys	Glu	Asn	Gln	Met	Arg	Vidmar et al., 2017
Heme oxygenase 2	P30519		peptide-Glu13+Ser-peptide	N	MS	Gly	Val	Asp	Glu	Ser	Glu	Lys	Lys	Vidmar et al., 2017
Heme-binding protein 2	Q9Y5Z4		peptide-Glu39+Ile-peptide	N	MS	Gly	Ser	Tyr	Glu	Ile	Arg	His	Tyr	Vidmar et al., 2017
Heme-binding protein 2	Q9Y5Z4		peptide-Glu191+Val-peptide	N	MS	Arg	Asn	Asn	Glu	Val	Trp	Leu	Ile	Vidmar et al., 2017
Hemojuvelin	Q6ZVN8		peptide-Cys317+Val-peptide	N	MS	Leu	Gln	Leu	Cys	Val	Gly	Gly	Cys	Vidmar et al., 2017
Hepatocyte growth factor-regulated tyrosine kinase substrate	O14964		peptide-Glu224+Gly-peptide	N	MS	Arg	Lys	Ala	Glu	Gly	Lys	Ala	Thr	Vidmar et al., 2017
hepatoma-derived growth factor	P51858	180-197	EAATLE+VERPLPMEVEK	N	MS	Ala	Thr	Leu	Glu	Val	Glu	Arg	Pro	Schilling & Overall, 2008
hepatoma-derived growth factor	P51858	126-148	peptide-Glu136+Gly-peptide	N	MS	Ser	Asp	Glu	Glu	Gly	Lys	Leu	Val	Schilling & Overall, 2008
hepatoma-derived growth factor	P51858	1-240	peptide-Glu117+Ala-peptide	N	MS	Pro	Glu	Pro	Glu	Ala	Ala	Glu	Gly	Schilling & Overall, 2008
Hepatoma-derived growth factor	P51858		peptide-Glu150+Lys-peptide	N	MS	Glu	Lys	Asn	Glu	Lys	Gly	Ala	Leu	Vidmar et al., 2017
Hepatoma-derived growth factor	P51858		peptide-Glu68+Ser-peptide	N	MS	Pro	Tyr	Glu	Glu	Ser	Lys	Glu	Lys	Vidmar et al., 2017
Hepatoma-derived growth factor	P51858		peptide-Glu54+Thr-peptide	N	MS	Gly	Thr	His	Glu	Thr	Ala	Phe	Leu	Vidmar et al., 2017
Hepatoma-derived growth factor	P51858		peptide-Glu163+Asp-peptide	N	MS	Asp	Leu	Leu	Glu	Asp	Ser	Pro	Lys	Vidmar et al., 2017
Hepatoma-derived growth factor	P51858		peptide-Glu71+Lys-peptide	N	MS	Glu	Ser	Lys	Glu	Lys	Phe	Gly	Lys	Vidmar et al., 2017
Hepatoma-derived growth factor	P51858		peptide-Glu227+Asp-peptide	N	MS	Ala	Thr	Lys	Glu	Asp	Ala	Glu	Ala	Vidmar et al., 2017
Hepatoma-derived growth factor-related protein 2	Q7Z4V5		peptide-Glu408+Ala-peptide	N	MS	Leu	Glu	Arg	Glu	Ala	Lys	Lys	Ser	Vidmar et al., 2017
Hepatoma-derived growth factor-related protein 2	Q7Z4V5		peptide-Glu556+Ala-peptide	N	MS	Pro	Lys	Ile	Glu	Ala	Val	Gln	Lys	Vidmar et al., 2017
Hepatoma-derived growth factor-related protein 2	Q7Z4V5		peptide-Glu326+Leu-peptide	N	MS	Arg	Arg	Arg	Glu	Leu	Glu	Ala	Arg	Vidmar et al., 2017
Hepatoma-derived growth factor-related protein 2	Q7Z4V5		peptide-Glu658+Arg-peptide	N	MS	Gln	Glu	Arg	Glu	Arg	Ala	Arg	Gly	Vidmar et al., 2017
Hepatoma-derived growth factor-related protein 2	Q7Z4V5		peptide-Glu431+Lys-peptide	N	MS	Gly	Gln	Lys	Glu	Lys	Arg	Val	Arg	Vidmar et al., 2017
hepatopoietin PCn127	Q1AHP8	116-132	SLDLFNCE+VTNLNDYR	N	MS	Phe	Asn	Cys	Glu	Val	Thr	Asn	Leu	Schilling & Overall, 2008
Heterogeneous nuclear ribonucleoprotein A/B	Q99729		peptide-Glu225+Ile-peptide	N	MS	Ser	Lys	Cys	Glu	Ile	Lys	Val	Ala	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein A1	P09651	31-52	peptide-Glu35+Gln-peptide	N	MS	Ser	His	Phe	Glu	Gln	Trp	Gly	Thr	Schilling & Overall, 2008
Heterogeneous nuclear ribonucleoprotein A1	P09651		peptide-Gly342+Gly-peptide	N	MS	Gly	Pro	Tyr	Gly	Gly	Gly	Gly	Gln	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein A1	P09651		peptide-Asp314+Phe-peptide	N	MS	Ser	Tyr	Asn	Asp	Phe	Gly	Asn	Tyr	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein A1	P09651		peptide-Glu11+Gln-peptide	N	MS	Lys	Glu	Pro	Glu	Gln	Leu	Arg	Lys	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein A1	P09651		peptide-Gly358+Gly-peptide	N	MS	Gly	Gly	Tyr	Gly	Gly	Ser	Ser	Ser	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein A1	P09651		peptide-Glu176+Val-peptide	N	MS	His	Asn	Cys	Glu	Val	Arg	Lys	Ala	Vidmar et al., 2017
heterogeneous nuclear ribonucleoprotein A1-like protein	Q32P51	261-277	D+FGNYNNQSSNFGPMK	N	MS	-	-	-	Asp	Phe	Gly	Asn	Tyr	Schilling & Overall, 2008
heterogeneous nuclear ribonucleoprotein A1-like protein	Q32P51	31-52	peptide-Glu35+Gln-peptide	N	MS	Ser	His	Phe	Glu	Gln	Trp	Gly	Thr	Schilling & Overall, 2008
heterogeneous nuclear ribonucleoprotein AB isoform a variant	Q53F64	1-71	peptide-Glu56+Gly-peptide	N	MS	Asn	Gly	Ala	Glu	Gly	Asp	Gln	Ile	Schilling & Overall, 2008
heterogeneous nuclear ribonucleoprotein AB isoform a variant	Q53F64	1-332	peptide-Glu95+Val-peptide	N	MS	Lys	Phe	Gly	Glu	Val	Val	Asp	Cys	Schilling & Overall, 2008
heterogeneous nuclear ribonucleoprotein AB isoform a variant	Q53F64	1-332	peptide-Glu164+Ala-peptide	N	MS	Leu	Asn	Pro	Glu	Ala	Thr	Glu	Glu	Schilling & Overall, 2008
heterogeneous nuclear ribonucleoprotein AB isoform a variant	Q53F64	1-332	peptide-Glu125+Lys-peptide	N	MS	Ala	Ser	Val	Glu	Lys	Val	Leu	Asp	Schilling & Overall, 2008
Heterogeneous nuclear ribonucleoprotein D-like	O14979		peptide-Glu272+Arg-peptide	N	MS	Lys	Thr	Asn	Glu	Arg	Arg	Gly	Phe	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein D-like	O14979		peptide-Glu260+Asn-peptide	N	MS	Gly	Glu	Ile	Glu	Asn	Ile	Glu	Leu	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein D-like	O14979		peptide-Glu292+Ser-peptide	N	MS	Lys	Leu	Leu	Glu	Ser	Arg	Tyr	His	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein D0	Q14103		peptide-Glu64+Gly-peptide	N	MS	Ala	Glu	Ser	Glu	Gly	Ala	Lys	Ile	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein D0	Q14103		peptide-Glu241+Lys-peptide	N	MS	Lys	Ile	Met	Glu	Lys	Lys	Tyr	His	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein D0	Q14103		peptide-Glu147+Ser-peptide	N	MS	Leu	Phe	Lys	Glu	Ser	Glu	Ser	Val	Vidmar et al., 2017
heterogeneous nuclear ribonucleoprotein F	P52597	299-316	ATE+NDIYNFFSPLNPVR	N	MS	-	Ala	Thr	Glu	Asn	Asp	Ile	Tyr	Schilling & Overall, 2008
heterogeneous nuclear ribonucleoprotein F	P52597	2-415	peptide-Glu320+Ile-peptide	N	MS	Val	His	Ile	Glu	Ile	Gly	Pro	Asp	Schilling & Overall, 2008
heterogeneous nuclear ribonucleoprotein F	P52597	2-415	peptide-Glu229+Arg-peptide	N	MS	Ala	Gly	Leu	Glu	Arg	Met	Arg	Pro	Schilling & Overall, 2008
Heterogeneous nuclear ribonucleoprotein F	P52597		peptide-Glu340+Ala-peptide	N	MS	Thr	His	Glu	Glu	Ala	Val	Ala	Ala	Vidmar et al., 2017
heterogeneous nuclear ribonucleoprotein H	P31943	299-316	ATE+NDIYNFFSPLNPVR	N	MS	-	Ala	Thr	Glu	Asn	Asp	Ile	Tyr	Schilling & Overall, 2008
heterogeneous nuclear ribonucleoprotein H	P31943	2-449	peptide-Glu320+Ile-peptide	N	MS	Val	His	Ile	Glu	Ile	Gly	Pro	Asp	Schilling & Overall, 2008
Heterogeneous nuclear ribonucleoprotein H	P31943		peptide-Glu26+Val-peptide	N	MS	Ser	Ala	Asp	Glu	Val	Gln	Arg	Phe	Vidmar et al., 2017
heterogeneous nuclear ribonucleoprotein H2	P55795	1-449	peptide-Glu320+Ile-peptide	N	MS	Val	His	Ile	Glu	Ile	Gly	Pro	Asp	Schilling & Overall, 2008
Heterogeneous nuclear ribonucleoprotein K	P61978		peptide-Glu30+Gln-peptide	N	MS	Met	Glu	Glu	Glu	Gln	Ala	Phe	Lys	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein K	P61978		peptide-Glu183+Cys-peptide	N	MS	Leu	Phe	Gln	Glu	Cys	Cys	Pro	His	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein K	P61978		peptide-Glu18+Phe-peptide	N	MS	Thr	Asn	Gly	Glu	Phe	Gly	Lys	Arg	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein K	P61978		peptide-Glu172+Asn-peptide	N	MS	Glu	Leu	Arg	Glu	Asn	Thr	Gln	Thr	Vidmar et al., 2017
heterogeneous nuclear ribonucleoprotein L	P14866	554-568	SDALE+TLGFLNHYQMK	N	MS	Asp	Ala	Leu	Glu	Thr	Leu	Gly	Phe	Schilling & Overall, 2008
heterogeneous nuclear ribonucleoprotein L	P14866	1-589	peptide-Glu509+Arg-peptide	N	MS	Gly	Lys	Ser	Glu	Arg	Ser	Ser	Ser	Schilling & Overall, 2008
heterogeneous nuclear ribonucleoprotein L	P14866	1-589	peptide-Glu480+Val-peptide	N	MS	Ala	Pro	Leu	Glu	Val	Thr	Glu	Glu	Schilling & Overall, 2008
heterogeneous nuclear ribonucleoprotein L	P14866	1-589	peptide-Glu483+Glu-peptide	N	MS	Glu	Val	Thr	Glu	Glu	Asn	Phe	Phe	Schilling & Overall, 2008
heterogeneous nuclear ribonucleoprotein L	P14866	1-589	peptide-Glu484+Asn-peptide	N	MS	Val	Thr	Glu	Glu	Asn	Phe	Phe	Glu	Schilling & Overall, 2008
heterogeneous nuclear ribonucleoprotein L	P14866	1-589	peptide-Glu84+Ala-peptide	N	MS	Gly	Val	Val	Glu	Ala	Asp	Leu	Val	Schilling & Overall, 2008
heterogeneous nuclear ribonucleoprotein L	P14866	1-589	peptide-Glu437+Asp-peptide	N	MS	Tyr	Gly	Leu	Glu	Asp	Gly	Ser	Cys	Schilling & Overall, 2008
Heterogeneous nuclear ribonucleoprotein M	P52272		peptide-Glu374+Ile-peptide	N	MS	Arg	Ile	Asn	Glu	Ile	Leu	Ser	Asn	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein M	P52272		peptide-Glu556+Arg-peptide	N	MS	Thr	Gly	Leu	Glu	Arg	Met	Gly	Ala	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein M	P52272		peptide-Glu530+Arg-peptide	N	MS	Leu	Ser	Met	Glu	Arg	Met	Val	Pro	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein Q	O60506		peptide-Glu106+Lys-peptide	N	MS	Arg	Gln	Arg	Glu	Lys	Gln	Gly	Thr	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein Q	O60506		peptide-Glu365+Arg-peptide	N	MS	Gly	Lys	Leu	Glu	Arg	Val	Lys	Lys	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein Q	O60506		peptide-Glu25+Asn-peptide	N	MS	Ile	His	Ser	Glu	Asn	Phe	Gln	Thr	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein Q	O60506		peptide-Glu402+Ile-peptide	N	MS	Glu	Asn	Ile	Glu	Ile	Val	Phe	Ala	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein Q	O60506		peptide-Glu129+Arg-peptide	N	MS	Ala	Leu	Leu	Glu	Arg	Thr	Gly	Tyr	Vidmar et al., 2017
heterogeneous nuclear ribonucleoprotein R	O43390	427-441	STAYE+DYYYHPPPR	N	MS	Thr	Ala	Tyr	Glu	Asp	Tyr	Tyr	Tyr	Schilling & Overall, 2008
heterogeneous nuclear ribonucleoprotein R	O43390	69-84	EFNEE+GALSVLQQFK	N	MS	Phe	Asn	Glu	Glu	Gly	Ala	Leu	Ser	Schilling & Overall, 2008
heterogeneous nuclear ribonucleoprotein R	O43390	269-285	TE+GLVDVILYHQPDDK	N	MS	-	-	Thr	Glu	Gly	Leu	Val	Asp	Schilling & Overall, 2008
Heterogeneous nuclear ribonucleoprotein R	O43390		peptide-Glu117+Ser-peptide	N	MS	Lys	Val	Gln	Glu	Ser	Thr	Lys	Gly	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein R	O43390		peptide-Glu622+Phe-peptide	N	MS	Asp	Asn	Gln	Glu	Phe	Tyr	Gln	Asp	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein U	Q00839		peptide-Glu630+His-peptide	N	MS	Asp	Leu	Pro	Glu	His	Ala	Val	Leu	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein U	Q00839		peptide-Glu46+Ala-peptide	N	MS	Asp	Asp	Glu	Glu	Ala	Gly	Gly	Arg	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein U	Q00839		peptide-Glu19+Leu-peptide	N	MS	Leu	Lys	Glu	Glu	Leu	Lys	Lys	Arg	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein U-like protein 1	Q9BUJ2		peptide-Glu586+Ala-peptide	N	MS	Gln	Arg	Glu	Glu	Ala	Asp	Lys	Leu	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein U-like protein 2	Q1KMD3		peptide-Glu14+Leu-peptide	N	MS	Leu	Arg	Ser	Glu	Leu	Gln	Arg	Arg	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein U-like protein 2	Q1KMD3		peptide-Glu427+Phe-peptide	N	MS	Pro	Pro	Glu	Glu	Phe	Val	Phe	Ile	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein U-like protein 2	Q1KMD3		peptide-Glu607+Val-peptide	N	MS	Tyr	Met	Asp	Glu	Val	Thr	Tyr	Gly	Vidmar et al., 2017
heterogeneous nuclear ribonucleoproteins A2/B1	P22626	62-89	peptide-Glu74+Val-peptide	N	MS	Ser	Met	Ala	Glu	Val	Asp	Ala	Ala	Schilling & Overall, 2008
heterogeneous nuclear ribonucleoproteins A2/B1	P22626	1-353	peptide-Glu121+Asp-peptide	N	MS	Gly	Ile	Lys	Glu	Asp	Thr	Glu	Glu	Schilling & Overall, 2008
Heterogeneous nuclear ribonucleoproteins A2/B1	P22626		peptide-Gly210+Asp-peptide	N	MS	Phe	Gly	Phe	Gly	Asp	Ser	Arg	Gly	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoproteins A2/B1	P22626		peptide-Glu101+Ser-peptide	N	MS	Ala	Arg	Glu	Glu	Ser	Gly	Lys	Pro	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoproteins A2/B1	P22626		peptide-Gly235+Ser-peptide	N	MS	Asp	Gly	Tyr	Gly	Ser	Gly	Arg	Gly	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoproteins A2/B1	P22626		peptide-Glu183+Val-peptide	N	MS	His	Asn	Ala	Glu	Val	Arg	Lys	Ala	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoproteins A2/B1	P22626		peptide-Glu6+Thr-peptide	N	MS	Lys	Thr	Leu	Glu	Thr	Val	Pro	Leu	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoproteins A2/B1	P22626		peptide-Glu195+Val-peptide	N	MS	Glu	Met	Gln	Glu	Val	Gln	Ser	Ser	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoproteins A2/B1	P22626		peptide-Glu125+His-peptide	N	MS	Asp	Thr	Glu	Glu	His	His	Leu	Arg	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoproteins A2/B1	P22626		peptide-Gly332+Gly-peptide	N	MS	Gly	Pro	Tyr	Gly	Gly	Gly	Asn	Tyr	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoproteins C1/C2	P07910		peptide-Glu263+Gly-peptide	N	MS	Ser	Ala	Glu	Glu	Gly	Asp	Leu	Leu	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoproteins C1/C2	P07910		peptide-Glu212+Asn-peptide	N	MS	Ser	Leu	Leu	Glu	Asn	Leu	Glu	Lys	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoproteins C1/C2	P07910		peptide-Glu199+Leu-peptide	N	MS	Ile	Lys	Lys	Glu	Leu	Thr	Gln	Ile	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoproteins C1/C2	P07910		peptide-Glu227+Met-peptide	N	MS	Gln	Ala	Val	Glu	Met	Lys	Asn	Asp	Vidmar et al., 2017
high mobility group protein 1-like 10	B2RPK0	128-146	LGE+MWNNTAADDKQPYEK	N	MS	-	Leu	Gly	Glu	Met	Trp	Asn	Asn	Schilling & Overall, 2008
high mobility group protein B1	P09429	128-146	LGE+MWNNTAADDKQPYEK	N	MS	-	Leu	Gly	Glu	Met	Trp	Asn	Asn	Schilling & Overall, 2008
High mobility group protein B1	P09429		peptide-Arg163+Ala-peptide	N	MS	Ala	Ala	Tyr	Arg	Ala	Lys	Gly	Lys	Vidmar et al., 2017
High mobility group protein B1	P09429		peptide-Glu84+Thr-peptide	N	MS	Pro	Lys	Gly	Glu	Thr	Lys	Lys	Lys	Vidmar et al., 2017
High mobility group protein B1	P09429		peptide-Glu56+Lys-peptide	N	MS	Ser	Ala	Lys	Glu	Lys	Gly	Lys	Phe	Vidmar et al., 2017
High mobility group protein B1	P09429		peptide-Glu25+Glu-peptide	N	MS	Thr	Cys	Arg	Glu	Glu	His	Lys	Lys	Vidmar et al., 2017
High mobility group protein B1	P09429		peptide-Glu145+Lys-peptide	N	MS	Gln	Pro	Tyr	Glu	Lys	Lys	Ala	Ala	Vidmar et al., 2017
High mobility group protein B1	P09429		peptide-Glu156+Lys-peptide	N	MS	Glu	Lys	Tyr	Glu	Lys	Asp	Ile	Ala	Vidmar et al., 2017
High mobility group protein B1	P09429		peptide-Asp62+Met-peptide	N	MS	Lys	Phe	Glu	Asp	Met	Ala	Lys	Ala	Vidmar et al., 2017
High mobility group protein B1	P09429		peptide-Glu61+Asp-peptide	N	MS	Gly	Lys	Phe	Glu	Asp	Met	Ala	Lys	Vidmar et al., 2017
High mobility group protein B1	P09429		peptide-Glu26+His-peptide	N	MS	Cys	Arg	Glu	Glu	His	Lys	Lys	Lys	Vidmar et al., 2017
High mobility group protein B1	P09429		peptide-Glu108+Tyr-peptide	N	MS	Phe	Cys	Ser	Glu	Tyr	Arg	Pro	Lys	Vidmar et al., 2017
High mobility group protein B1	P09429		peptide-Asp158+Ile-peptide	N	MS	Tyr	Glu	Lys	Asp	Ile	Ala	Ala	Tyr	Vidmar et al., 2017
High mobility group protein B1	P09429		peptide-Glu47+Arg-peptide	N	MS	Lys	Cys	Ser	Glu	Arg	Trp	Lys	Thr	Vidmar et al., 2017
High mobility group protein B2	P26583		peptide-Glu153+Lys-peptide	N	MS	Lys	Leu	Lys	Glu	Lys	Tyr	Glu	Lys	Vidmar et al., 2017
High mobility group protein B2	P26583		peptide-Glu135+Gln-peptide	N	MS	Met	Trp	Ser	Glu	Gln	Ser	Ala	Lys	Vidmar et al., 2017
High mobility group protein B2	P26583		peptide-Asp62+Met-peptide	N	MS	Lys	Phe	Glu	Asp	Met	Ala	Lys	Ser	Vidmar et al., 2017
High mobility group protein B2	P26583		peptide-Glu108+His-peptide	N	MS	Phe	Cys	Ser	Glu	His	Arg	Pro	Lys	Vidmar et al., 2017
High mobility group protein B2	P26583		peptide-Glu56+Lys-peptide	N	MS	Ser	Ala	Lys	Glu	Lys	Ser	Lys	Phe	Vidmar et al., 2017
High mobility group protein B2	P26583		peptide-Glu25+Glu-peptide	N	MS	Thr	Cys	Arg	Glu	Glu	His	Lys	Lys	Vidmar et al., 2017
High mobility group protein B2	P26583		peptide-Glu26+His-peptide	N	MS	Cys	Arg	Glu	Glu	His	Lys	Lys	Lys	Vidmar et al., 2017
High mobility group protein B2	P26583		peptide-Glu61+Asp-peptide	N	MS	Ser	Lys	Phe	Glu	Asp	Met	Ala	Lys	Vidmar et al., 2017
High mobility group protein B2	P26583		peptide-Glu156+Lys-peptide	N	MS	Glu	Lys	Tyr	Glu	Lys	Asp	Ile	Ala	Vidmar et al., 2017
High mobility group protein B2	P26583		peptide-Asp158+Ile-peptide	N	MS	Tyr	Glu	Lys	Asp	Ile	Ala	Ala	Tyr	Vidmar et al., 2017
High mobility group protein B3	O15347		peptide-Glu106+Phe-peptide	N	MS	Phe	Cys	Ser	Glu	Phe	Arg	Pro	Lys	Vidmar et al., 2017
High mobility group protein B3	O15347		peptide-Glu47+Arg-peptide	N	MS	Lys	Cys	Ser	Glu	Arg	Trp	Lys	Thr	Vidmar et al., 2017
High mobility group protein B3	O15347		peptide-Glu62+Met-peptide	N	MS	Lys	Phe	Asp	Glu	Met	Ala	Lys	Ala	Vidmar et al., 2017
hirudin HM2 precursor	P81492	21-84	peptide-Glu61+Gly-peptide	N		Val	His	Gly	Glu	Gly	Thr	Pro	Lys	Vindigni et al., 1994
hirudin HM2 precursor	P81492	21-84	peptide-Glu71+Gly-peptide	N		Ser	Gln	Thr	Glu	Gly	Asp	Phe	Glu	Vindigni et al., 1994
hirudin HM2 precursor	P81492	21-84	peptide-Glu28+Ser-peptide	N		Asp	Cys	Thr	Glu	Ser	Gly	Gln	Asn	Vindigni et al., 1994
histidine biosynthesis bifunctional protein hisB	P06987	1-355	peptide-Glu280+Tyr-peptide	N	MS	Pro	His	Leu	Glu	Tyr	Lys	Ala	Glu	Timmer et al., 2009
histidine triad nucleotide-binding protein 1	P49773	37-57	CLAFHD+ISPQAPTHFLVIPK	N	MS	Ala	Phe	His	Asp	Ile	Ser	Pro	Gln	Schilling & Overall, 2008
histidine triad nucleotide-binding protein 1	P49773	2-126	peptide-Glu26+Ile-peptide	N	MS	Ile	Arg	Lys	Glu	Ile	Pro	Ala	Lys	Schilling & Overall, 2008
Histidine--tRNA ligase, cytoplasmic	P12081		peptide-Glu439+Leu-peptide	N	MS	Ile	Lys	Ala	Glu	Leu	Leu	Tyr	Lys	Vidmar et al., 2017
Histidine--tRNA ligase, cytoplasmic	P12081		peptide-Glu470+Leu-peptide	N	MS	Gly	Glu	Gln	Glu	Leu	Lys	Asp	Gly	Vidmar et al., 2017
Histone deacetylase complex subunit SAP18	O00422		peptide-Glu23+Lys-peptide	N	MS	Ile	Asp	Arg	Glu	Lys	Thr	Cys	Pro	Vidmar et al., 2017
Histone deacetylase complex subunit SAP18	O00422		peptide-Glu45+Phe-peptide	N	MS	Arg	Met	Asp	Glu	Phe	Ser	Arg	Gly	Vidmar et al., 2017
histone H1.2	P16403	1-21	SE+TAPAAPAAAPPAEKAPVK	N	MS	-	-	Ser	Glu	Thr	Ala	Pro	Ala	Schilling & Overall, 2008
Histone H1.2	P16403		peptide-Gly100+Ala-peptide	N	MS	Lys	Gly	Thr	Gly	Ala	Ser	Gly	Ser	Vidmar et al., 2017
Histone H1.2	P16403		peptide-Glu53+Arg-peptide	N	MS	Ala	Ser	Lys	Glu	Arg	Ser	Gly	Val	Vidmar et al., 2017
Histone H1.2	P16403		peptide-Glu42+Leu-peptide	N	MS	Pro	Val	Ser	Glu	Leu	Ile	Thr	Lys	Vidmar et al., 2017
histone H1.4	P10412	1-21	SE+TAPAAPAAPAPAEKTPVK	N	MS	-	-	Ser	Glu	Thr	Ala	Pro	Ala	Schilling & Overall, 2008
histone H2A type 1	P0C0S8	100-119	VTIAQ+GGVLPNIQAVLLPK	N	MS	Thr	Ile	Ala	Gln	Gly	Gly	Val	Leu	Schilling & Overall, 2008
histone H2A type 1	P0C0S8	100-119	VTIA+QGGVLPNIQAVLLPK	N	MS	Val	Thr	Ile	Ala	Gln	Gly	Gly	Val	Schilling & Overall, 2008
histone H2A type 1	P0C0S8	2-130	peptide-Glu122+Ser-peptide	N	MS	Lys	Lys	Thr	Glu	Ser	His	His	Lys	Schilling & Overall, 2008
histone H2A type 1-A	Q96QV6	100-119	VTIAQ+GGVLPNIQAVLLPK	N	MS	Thr	Ile	Ala	Gln	Gly	Gly	Val	Leu	Schilling & Overall, 2008
histone H2A type 1-A	Q96QV6	100-119	VTIA+QGGVLPNIQAVLLPK	N	MS	Val	Thr	Ile	Ala	Gln	Gly	Gly	Val	Schilling & Overall, 2008
histone H2A type 1-A	Q96QV6	2-131	peptide-Glu122+Ser-peptide	N	MS	Lys	Lys	Thr	Glu	Ser	His	His	His	Schilling & Overall, 2008
histone H2A type 1-B	P04908	100-119	VTIAQ+GGVLPNIQAVLLPK	N	MS	Thr	Ile	Ala	Gln	Gly	Gly	Val	Leu	Schilling & Overall, 2008
histone H2A type 1-B	P04908	100-119	VTIA+QGGVLPNIQAVLLPK	N	MS	Val	Thr	Ile	Ala	Gln	Gly	Gly	Val	Schilling & Overall, 2008
histone H2A type 1-B	P04908	2-130	peptide-Glu122+Ser-peptide	N	MS	Lys	Lys	Thr	Glu	Ser	His	His	Lys	Schilling & Overall, 2008
histone H2A type 1-C	Q93077	100-119	VTIAQ+GGVLPNIQAVLLPK	N	MS	Thr	Ile	Ala	Gln	Gly	Gly	Val	Leu	Schilling & Overall, 2008
histone H2A type 1-C	Q93077	100-119	VTIA+QGGVLPNIQAVLLPK	N	MS	Val	Thr	Ile	Ala	Gln	Gly	Gly	Val	Schilling & Overall, 2008
histone H2A type 1-C	Q93077	2-130	peptide-Glu122+Ser-peptide	N	MS	Lys	Lys	Thr	Glu	Ser	His	His	Lys	Schilling & Overall, 2008
histone H2A type 1-D	P20671	100-119	VTIAQ+GGVLPNIQAVLLPK	N	MS	Thr	Ile	Ala	Gln	Gly	Gly	Val	Leu	Schilling & Overall, 2008
histone H2A type 1-D	P20671	100-119	VTIA+QGGVLPNIQAVLLPK	N	MS	Val	Thr	Ile	Ala	Gln	Gly	Gly	Val	Schilling & Overall, 2008
histone H2A type 1-D	P20671	2-130	peptide-Glu122+Ser-peptide	N	MS	Lys	Lys	Thr	Glu	Ser	His	His	Lys	Schilling & Overall, 2008
histone H2A type 1-E	P28001	100-119	VTIAQ+GGVLPNIQAVLLPK	N	MS	Thr	Ile	Ala	Gln	Gly	Gly	Val	Leu	Schilling & Overall, 2008
histone H2A type 1-E	P28001	100-119	VTIA+QGGVLPNIQAVLLPK	N	MS	Val	Thr	Ile	Ala	Gln	Gly	Gly	Val	Schilling & Overall, 2008
histone H2A type 1-E	P28001	2-130	peptide-Glu122+Ser-peptide	N	MS	Lys	Lys	Thr	Glu	Ser	His	His	Lys	Schilling & Overall, 2008
histone H2A type 1-H	Q96KK5	100-119	VTIAQ+GGVLPNIQAVLLPK	N	MS	Thr	Ile	Ala	Gln	Gly	Gly	Val	Leu	Schilling & Overall, 2008
histone H2A type 1-H	Q96KK5	100-119	VTIA+QGGVLPNIQAVLLPK	N	MS	Val	Thr	Ile	Ala	Gln	Gly	Gly	Val	Schilling & Overall, 2008
histone H2A type 1-H	Q96KK5	2-128	peptide-Glu122+Ser-peptide	N	MS	Lys	Lys	Thr	Glu	Ser	His	His	Lys	Schilling & Overall, 2008
histone H2A type 1-J	Q99878	100-119	VTIAQ+GGVLPNIQAVLLPK	N	MS	Thr	Ile	Ala	Gln	Gly	Gly	Val	Leu	Schilling & Overall, 2008
histone H2A type 1-J	Q99878	100-119	VTIA+QGGVLPNIQAVLLPK	N	MS	Val	Thr	Ile	Ala	Gln	Gly	Gly	Val	Schilling & Overall, 2008
histone H2A type 1-J	Q99878	2-128	peptide-Glu122+Ser-peptide	N	MS	Lys	Lys	Thr	Glu	Ser	His	His	Lys	Schilling & Overall, 2008
histone H2A type 2-A	Q6FI13	100-119	VTIAQ+GGVLPNIQAVLLPK	N	MS	Thr	Ile	Ala	Gln	Gly	Gly	Val	Leu	Schilling & Overall, 2008
histone H2A type 2-A	Q6FI13	100-119	VTIA+QGGVLPNIQAVLLPK	N	MS	Val	Thr	Ile	Ala	Gln	Gly	Gly	Val	Schilling & Overall, 2008
histone H2A type 2-A	Q6FI13	2-130	peptide-Glu122+Ser-peptide	N	MS	Lys	Lys	Thr	Glu	Ser	His	His	Lys	Schilling & Overall, 2008
histone H2A type 2-B	Q8IUE6	100-119	VTIAQ+GGVLPNIQAVLLPK	N	MS	Thr	Ile	Ala	Gln	Gly	Gly	Val	Leu	Schilling & Overall, 2008
histone H2A type 2-B	Q8IUE6	100-119	VTIA+QGGVLPNIQAVLLPK	N	MS	Val	Thr	Ile	Ala	Gln	Gly	Gly	Val	Schilling & Overall, 2008
histone H2A type 2-B	Q8IUE6	2-130	peptide-Glu122+Ser-peptide	N	MS	Lys	Lys	Thr	Glu	Ser	His	Lys	Pro	Schilling & Overall, 2008
histone H2A type 2-C	Q16777	100-119	VTIAQ+GGVLPNIQAVLLPK	N	MS	Thr	Ile	Ala	Gln	Gly	Gly	Val	Leu	Schilling & Overall, 2008
histone H2A type 2-C	Q16777	100-119	VTIA+QGGVLPNIQAVLLPK	N	MS	Val	Thr	Ile	Ala	Gln	Gly	Gly	Val	Schilling & Overall, 2008
histone H2A type 2-C	Q16777	2-129	peptide-Glu122+Ser-peptide	N	MS	Lys	Lys	Thr	Glu	Ser	His	Lys	Ala	Schilling & Overall, 2008
histone H2A type 3	Q7L7L0	100-119	VTIAQ+GGVLPNIQAVLLPK	N	MS	Thr	Ile	Ala	Gln	Gly	Gly	Val	Leu	Schilling & Overall, 2008
histone H2A type 3	Q7L7L0	100-119	VTIA+QGGVLPNIQAVLLPK	N	MS	Val	Thr	Ile	Ala	Gln	Gly	Gly	Val	Schilling & Overall, 2008
histone H2A type 3	Q7L7L0	2-130	peptide-Glu122+Ser-peptide	N	MS	Lys	Lys	Thr	Glu	Ser	His	His	Lys	Schilling & Overall, 2008
histone H2A.x	P16104	100-119	VTIAQ+GGVLPNIQAVLLPK	N	MS	Thr	Ile	Ala	Gln	Gly	Gly	Val	Leu	Schilling & Overall, 2008
histone H2A.x	P16104	100-119	VTIA+QGGVLPNIQAVLLPK	N	MS	Val	Thr	Ile	Ala	Gln	Gly	Gly	Val	Schilling & Overall, 2008
Histone H2B type 1-J	P06899		peptide-Glu77+Ala-peptide	N	MS	Ile	Ala	Gly	Glu	Ala	Ser	Arg	Leu	Vidmar et al., 2017
Histone H2B type 1-J	P06899		peptide-Glu94+Ile-peptide	N	MS	Thr	Ser	Arg	Glu	Ile	Gln	Thr	Ala	Vidmar et al., 2017
Histone H2B type 1-J	P06899		peptide-Glu114+Gly-peptide	N	MS	Ala	Val	Ser	Glu	Gly	Thr	Lys	Ala	Vidmar et al., 2017
Histone H2B type 1-L	Q99880		peptide-Glu114+Gly-peptide	N	MS	Ala	Val	Ser	Glu	Gly	Thr	Lys	Ala	Vidmar et al., 2017
histone H3	P08898	2-136	peptide-Glu51+Ile-peptide	N		Ala	Leu	Arg	Glu	Ile	Arg	Arg	Tyr	Vanfleteren et al., 1987
histone H3	P08898	2-136	peptide-Glu60+Leu-peptide	N		Lys	Ser	Thr	Glu	Leu	Leu	Ile	Arg	Vanfleteren et al., 1987
histone H3	P08898	2-136	peptide-Glu74+Ile-peptide	N		Leu	Val	Arg	Glu	Ile	Ala	Gln	Asp	Vanfleteren et al., 1987
histone H3	P08898	2-136	peptide-Glu95+Ala-peptide	N		Ala	Leu	Gln	Glu	Ala	Cys	Glu	Ala	Vanfleteren et al., 1987
histone H3	P08898	2-136	peptide-Glu98+Ala-peptide	N		Glu	Ala	Cys	Glu	Ala	Tyr	Leu	Val	Vanfleteren et al., 1987
histone H3	P08898	2-136	peptide-Glu106+Asp-peptide	N	NT	Gly	Leu	Phe	Glu	Asp	Thr	Asn	Leu	Vanfleteren et al., 1987
histone H4	P62805	24-36	D+NIQGITKPAIR	N	MS	-	-	-	Asp	Asn	Ile	Gln	Gly	Schilling & Overall, 2008
Histone H4	P62805		peptide-Glu75+His-peptide	N	MS	Thr	Tyr	Thr	Glu	His	Ala	Lys	Arg	Vidmar et al., 2017
HLA class I histocompatibility antigen, B-40 alpha chain	Q04826		peptide-Glu256+Thr-peptide	N	MS	Glu	Leu	Val	Glu	Thr	Arg	Pro	Ala	Vidmar et al., 2017
HLA class I histocompatibility antigen, B-40 alpha chain	Q04826		peptide-Glu152+Asp-peptide	N	MS	Ala	Leu	Asn	Glu	Asp	Leu	Arg	Ser	Vidmar et al., 2017
HLA class I histocompatibility antigen, B-40 alpha chain	Q04826		peptide-Glu87+Thr-peptide	N	MS	Trp	Asp	Arg	Glu	Thr	Gln	Ile	Ser	Vidmar et al., 2017
HLA class I histocompatibility antigen, B-73 alpha chain	Q31612		peptide-Glu256+Thr-peptide	N	MS	Glu	Leu	Val	Glu	Thr	Arg	Pro	Ala	Vidmar et al., 2017
HLA class II histocompatibility antigen gamma chain	P04233		peptide-Glu276+Leu-peptide	N	MS	Glu	Ser	Leu	Glu	Leu	Glu	Asp	Pro	Vidmar et al., 2017
Host cell factor 1	P51610		peptide-Glu2002+Thr-peptide	N	MS	Trp	Leu	Gln	Glu	Thr	Ser	Lys	Asp	Vidmar et al., 2017
Host cell factor 1	P51610		peptide-Glu1702+Ala-peptide	N	MS	Gln	Leu	Gln	Glu	Ala	Gln	Ala	Gln	Vidmar et al., 2017
Host cell factor 1	P51610		peptide-Glu1666+Leu-peptide	N	MS	Thr	Gln	Ala	Glu	Leu	Gly	His	Leu	Vidmar et al., 2017
hsc70-interacting protein	P50502	32-48	EWVE+SMGGKVPPATQK	N	MS	Glu	Trp	Val	Glu	Ser	Met	Gly	Gly	Schilling & Overall, 2008
hsc70-interacting protein	P50502	1-369	peptide-Glu27+Met-peptide	N	MS	His	Thr	Glu	Glu	Met	Arg	Phe	Leu	Schilling & Overall, 2008
Hsc70-interacting protein	P50502		peptide-Glu223+Val-peptide	N	MS	Met	Leu	Lys	Glu	Val	Gln	Pro	Arg	Vidmar et al., 2017
Hsc70-interacting protein	P50502		peptide-Glu249+Arg-peptide	N	MS	Glu	Ile	Lys	Glu	Arg	Ile	Glu	Arg	Vidmar et al., 2017
Hsc70-interacting protein	P50502		peptide-Glu8+Leu-peptide	N	MS	Lys	Val	Asn	Glu	Leu	Arg	Ala	Phe	Vidmar et al., 2017
Hsp90 co-chaperone Cdc37	Q16543		peptide-Glu350+Ala-peptide	N	MS	Lys	Ala	Ser	Glu	Ala	Lys	Glu	Gly	Vidmar et al., 2017
Hsp90 co-chaperone Cdc37	Q16543		peptide-Glu109+Lys-peptide	N	MS	Arg	Lys	Lys	Glu	Lys	Ser	Met	Pro	Vidmar et al., 2017
hspA8 protein	Q96IS6	53-67	SFYPEE+VSSMVLTK	N	MS	Tyr	Pro	Glu	Glu	Val	Ser	Ser	Met	Schilling & Overall, 2008
hspA8 protein	Q96H53	1-219	peptide-Glu71+Asn-peptide	N	MS	Thr	Gly	Lys	Glu	Asn	Lys	Ile	Thr	Schilling & Overall, 2008
hspA8 protein	Q96IS6	1-587	peptide-Glu439+Asn-peptide	N	MS	Thr	Gly	Lys	Glu	Asn	Lys	Ile	Thr	Schilling & Overall, 2008
hspA8 protein	Q96IS6	1-587	peptide-Asp27+Met-peptide	N	MS	Val	Gln	Ser	Asp	Met	Lys	His	Trp	Schilling & Overall, 2008
humer	Q14579	1-30	peptide-Glu23+Tyr-peptide	N	MS	Ala	Ser	Lys	Glu	Tyr	Phe	Gln	Lys	Schilling & Overall, 2008
Huntingtin	P42858		peptide-Glu728+Ser-peptide	N	MS	Leu	His	Pro	Glu	Ser	Phe	Phe	Ser	Vidmar et al., 2017
hydroxymethylbilane synthase	Q0G847	38-55	HLE+GGCSVPVAVHTAMK	N	MS	-	His	Leu	Glu	Gly	Gly	Cys	Ser	Schilling & Overall, 2008
Hydroxymethylglutaryl-CoA synthase, cytoplasmic	Q01581		peptide-Glu479+Gly-peptide	N	MS	Thr	Leu	Asp	Glu	Gly	Val	Gly	Leu	Vidmar et al., 2017
Hypoxanthine-guanine phosphoribosyltransferase	P00492		peptide-Glu33+Arg-peptide	N	MS	Glu	Asp	Leu	Glu	Arg	Val	Phe	Ile	Vidmar et al., 2017
Hypoxia up-regulated protein 1	Q9Y4L1		peptide-Glu312+Ala-peptide	N	MS	Leu	Leu	Arg	Glu	Ala	Asn	Arg	Leu	Vidmar et al., 2017
Hypoxia up-regulated protein 1	Q9Y4L1		peptide-Glu770+Ile-peptide	N	MS	Gln	Arg	Glu	Glu	Ile	Ser	Gly	Lys	Vidmar et al., 2017
Hypoxia up-regulated protein 1	Q9Y4L1		peptide-Glu874+Gln-peptide	N	MS	Thr	Leu	Ala	Glu	Gln	Ala	Lys	Leu	Vidmar et al., 2017
Hypoxia up-regulated protein 1	Q9Y4L1		peptide-Glu43+Ser-peptide	N	MS	Leu	Gly	Ser	Glu	Ser	Met	Lys	Val	Vidmar et al., 2017
Hypoxia up-regulated protein 1	Q9Y4L1		peptide-Glu682+Gly-peptide	N	MS	Pro	Ala	Pro	Glu	Gly	Glu	Lys	Lys	Vidmar et al., 2017
Hypoxia up-regulated protein 1	Q9Y4L1		peptide-Glu702+Leu-peptide	N	MS	Ile	Gly	Val	Glu	Leu	Val	Val	Leu	Vidmar et al., 2017
Hypoxia up-regulated protein 1	Q9Y4L1		peptide-Glu547+Ser-peptide	N	MS	Asn	Leu	Asp	Glu	Ser	Gly	Val	Leu	Vidmar et al., 2017
Hypoxia up-regulated protein 1	Q9Y4L1		peptide-Glu376+Ile-peptide	N	MS	Ser	Leu	Asp	Glu	Ile	Glu	Gln	Val	Vidmar et al., 2017
Hypoxia up-regulated protein 1	Q9Y4L1		peptide-Glu357+Arg-peptide	N	MS	Asp	Leu	Phe	Glu	Arg	Val	Pro	Gly	Vidmar et al., 2017
Hypoxia up-regulated protein 1	Q9Y4L1		peptide-Glu404+Leu-peptide	N	MS	Gly	Lys	Glu	Glu	Leu	Gly	Lys	Asn	Vidmar et al., 2017
Hypoxia up-regulated protein 1	Q9Y4L1		peptide-Glu331+Gly-peptide	N	MS	Ala	Gln	Ile	Glu	Gly	Leu	Met	Asp	Vidmar et al., 2017
Hypoxia up-regulated protein 1	Q9Y4L1		peptide-Glu656+Asn-peptide	N	MS	Thr	Glu	Lys	Glu	Asn	Gly	Asp	Lys	Vidmar et al., 2017
Hypoxia up-regulated protein 1	Q9Y4L1		peptide-Glu394+Val-peptide	N	MS	Arg	Val	Gln	Glu	Val	Leu	Leu	Lys	Vidmar et al., 2017
Hypoxia up-regulated protein 1	Q9Y4L1		peptide-Glu761+Val-peptide	N	MS	Glu	Tyr	Gln	Glu	Val	Ser	Thr	Glu	Vidmar et al., 2017
Hypoxia up-regulated protein 1	Q9Y4L1		peptide-Glu758+Tyr-peptide	N	MS	Tyr	Gln	Pro	Glu	Tyr	Gln	Glu	Val	Vidmar et al., 2017
IgG1 heavy chain (hinge region)	P01857	1-330	peptide-Glu15+Leu-peptide	P		Pro	Ala	Pro	Glu	Leu	Leu	Gly	Gly	Ryan et al., 2008	20263
import inner membrane translocase subunit TIM44, mitochondrial precursor	O43615	222-237	VFEPNEE+ALGVVLHK	N	MS	Pro	Asn	Glu	Glu	Ala	Leu	Gly	Val	Schilling & Overall, 2008
Importin subunit alpha-1	P52292		peptide-Glu482+Ser-peptide	N	MS	His	Glu	Asn	Glu	Ser	Val	Tyr	Lys	Vidmar et al., 2017
Importin subunit alpha-1	P52292		peptide-Glu91+Asn-peptide	N	MS	Ser	Asn	Val	Glu	Asn	Gln	Leu	Gln	Vidmar et al., 2017
Importin subunit alpha-1	P52292		peptide-Glu493+Lys-peptide	N	MS	Ser	Leu	Ile	Glu	Lys	Tyr	Phe	Ser	Vidmar et al., 2017
importin subunit beta-1	Q14974	594-613	VQHQD+ALQISDVVMASLLR	N	MS	Gln	His	Gln	Asp	Ala	Leu	Gln	Ile	Schilling & Overall, 2008
importin subunit beta-1	Q14974	105-147	peptide-Glu128+Leu-peptide	N	MS	Gln	Trp	Pro	Glu	Leu	Ile	Pro	Gln	Schilling & Overall, 2008
importin subunit beta-1	Q14974	509-525	LLE+TTDRPDGHQNNLR	N	MS	-	Leu	Leu	Glu	Thr	Thr	Asp	Arg	Schilling & Overall, 2008
importin subunit beta-1	Q14974	1-876	peptide-Glu203+Phe-peptide	N	MS	Asn	Ser	Leu	Glu	Phe	Thr	Lys	Ala	Schilling & Overall, 2008
importin subunit beta-1	Q14974	1-876	peptide-Glu184+Glu-peptide	N	MS	Met	Arg	Lys	Glu	Glu	Pro	Ser	Asn	Schilling & Overall, 2008
importin subunit beta-1	Q14974	1-876	peptide-Glu148+Ser-peptide	N	MS	His	Met	Lys	Glu	Ser	Thr	Leu	Glu	Schilling & Overall, 2008
Importin subunit beta-1	Q14974		peptide-Glu849+Gly-peptide	N	MS	Leu	Leu	Thr	Glu	Gly	Arg	Arg	Ser	Vidmar et al., 2017
Importin subunit beta-1	Q14974		peptide-Glu152+Ala-peptide	N	MS	Ser	Thr	Leu	Glu	Ala	Ile	Gly	Tyr	Vidmar et al., 2017
Importin subunit beta-1	Q14974		peptide-Glu845+Leu-peptide	N	MS	Met	Ile	His	Glu	Leu	Leu	Thr	Glu	Vidmar et al., 2017
Importin subunit beta-1	Q14974		peptide-Asp786+Val-peptide	N	MS	Val	His	Pro	Asp	Val	Met	Leu	Val	Vidmar et al., 2017
Importin subunit beta-1	Q14974		peptide-Glu90+Val-peptide	N	MS	Ala	Arg	Arg	Glu	Val	Lys	Asn	Tyr	Vidmar et al., 2017
importin subunit beta-3	O00410	2-1097	peptide-Glu31+Thr-peptide	N	MS	Gln	Ala	Glu	Glu	Thr	Tyr	Glu	Asn	Schilling & Overall, 2008
importin subunit beta-3	O00410	2-1097	peptide-Glu964+Asn-peptide	N	MS	Lys	Thr	Lys	Glu	Asn	Val	Asn	Ala	Schilling & Overall, 2008
importin subunit beta-3	O00410	2-1097	peptide-Glu991+Val-peptide	N	MS	Asn	Val	Glu	Glu	Val	Leu	Pro	His	Schilling & Overall, 2008
Importin-5	O00410		peptide-Glu809+Leu-peptide	N	MS	Lys	Asn	Gln	Glu	Leu	Arg	Gln	Val	Vidmar et al., 2017
Importin-5	O00410		peptide-Glu792+Leu-peptide	N	MS	His	Phe	Glu	Glu	Leu	Gly	Gly	Ile	Vidmar et al., 2017
Inactive tyrosine-protein kinase 7	Q13308		peptide-Glu1056+Ile-peptide	N	MS	Ser	Phe	Ser	Glu	Ile	Ala	Ser	Ala	Vidmar et al., 2017
inorganic pyrophosphatase	Q15181	57-70	ME+IATKDPLNPIK	N	MS	-	-	Met	Glu	Ile	Ala	Thr	Lys	Schilling & Overall, 2008
inorganic pyrophosphatase	Q15181	1-289	peptide-Asp42+Val-peptide	N	MS	Ala	Asp	Lys	Asp	Val	Phe	His	Met	Schilling & Overall, 2008
Inorganic pyrophosphatase	Q15181		peptide-Glu24+Lys-peptide	N	MS	Leu	Lys	Asn	Glu	Lys	Gly	Gln	Tyr	Vidmar et al., 2017
Inorganic pyrophosphatase	Q15181		peptide-Glu16+Tyr-peptide	N	MS	Phe	Ser	Leu	Glu	Tyr	Arg	Val	Phe	Vidmar et al., 2017
inosine triphosphate pyrophosphatase	Q9BY32	1-194	peptide-Glu44+Tyr-peptide	N	MS	Asp	Leu	Pro	Glu	Tyr	Gln	Gly	Glu	Schilling & Overall, 2008
inosine triphosphate pyrophosphatase	Q9BY32	1-194	peptide-Glu22+Val-peptide	N	MS	Lys	Leu	Glu	Glu	Val	Val	Gln	Ile	Schilling & Overall, 2008
Inosine triphosphate pyrophosphatase isoform 2	Q9BY32-2	1-177	peptide-Glu27+Tyr-peptide	N	MS	Asp	Leu	Pro	Glu	Tyr	Gln	Gly	Glu	Schilling & Overall, 2008
Inositol monophosphatase 1	P29218		peptide-Glu265+Ile-peptide	N	MS	Ile	Ala	Lys	Glu	Ile	Gln	Val	Ile	Vidmar et al., 2017
insulin receptor substrate 4	O14654	952-980	peptide-Glu963+Phe-peptide	N	MS	Val	Asn	Val	Glu	Phe	Gly	Val	Pro	Schilling & Overall, 2008
insulin receptor substrate 4	O14654	1-1257	peptide-Glu459+Val-peptide	N	MS	Leu	Ser	Ser	Glu	Val	Ser	Gly	Ser	Schilling & Overall, 2008
Insulin-degrading enzyme	P14735		peptide-Glu182+Val-peptide	N	MS	Lys	Asp	Arg	Glu	Val	Asn	Ala	Val	Vidmar et al., 2017
insulin-like growth factor 2 mRNA-binding protein 1	Q9NZI8	348-423	peptide-Glu406+Met-peptide	N	MS	Pro	Glu	Gln	Glu	Met	Val	Gln	Val	Schilling & Overall, 2008
insulin-like growth factor 2 mRNA-binding protein 1	Q9NZI8	1-577	peptide-Glu164+Asn-peptide	N	MS	Gln	Gly	Pro	Glu	Asn	Gly	Arg	Arg	Schilling & Overall, 2008
Insulin-like growth factor-binding protein 7	Q16270		peptide-Glu228+Val-peptide	N	MS	Glu	Lys	His	Glu	Val	Thr	Gly	Trp	Vidmar et al., 2017
integration host factor subunit alpha	P0A6X7	1-99	peptide-Glu7+Met-peptide	N	MS	Thr	Lys	Ala	Glu	Met	Ser	Glu	Tyr	Timmer et al., 2009
Integrin alpha-3	P26006		peptide-Glu44+Ala-peptide	N	MS	Val	Val	Lys	Glu	Ala	Gly	Asn	Pro	Vidmar et al., 2017
Integrin alpha-3	P26006		peptide-Asp36+Thr-peptide	N	MS	Phe	Asn	Leu	Asp	Thr	Arg	Phe	Leu	Vidmar et al., 2017
Integrin alpha-3	P26006		peptide-Glu170+Leu-peptide	N	MS	Asn	Asp	Leu	Glu	Leu	Asp	Ser	Ser	Vidmar et al., 2017
Integrin alpha-3	P26006		peptide-Glu535+Ser-peptide	N	MS	Ala	Gly	Ser	Glu	Ser	Ala	Val	Phe	Vidmar et al., 2017
Integrin alpha-3	P26006		peptide-Glu1036+Met-peptide	N	MS	Gln	Lys	Ala	Glu	Met	Lys	Ser	Gln	Vidmar et al., 2017
Integrin alpha-3	P26006		peptide-Glu622+Ser-peptide	N	MS	Asn	Lys	Cys	Glu	Ser	Asn	Leu	Gln	Vidmar et al., 2017
Integrin alpha-3	P26006		peptide-Glu782+Ser-peptide	N	MS	Val	Met	Gly	Glu	Ser	Gly	Met	Lys	Vidmar et al., 2017
Integrin alpha-5	P08648		peptide-Glu801+Ala-peptide	N	MS	Ser	Lys	Pro	Glu	Ala	Val	Leu	Phe	Vidmar et al., 2017
Integrin alpha-5	P08648		peptide-Arg894+Glu-peptide	N	MS	Gln	Gln	Lys	Arg	Glu	Ala	Pro	Ser	Vidmar et al., 2017
Integrin alpha-6	P23229		peptide-Glu714+Ile-peptide	N	MS	Ile	Ala	Leu	Glu	Ile	Thr	Val	Thr	Vidmar et al., 2017
Integrin alpha-6	P23229		peptide-Glu663+Gly-peptide	N	MS	Phe	Leu	Lys	Glu	Gly	Cys	Gly	Asp	Vidmar et al., 2017
Integrin alpha-6	P23229		peptide-Glu736+Ala-peptide	N	MS	Asp	Ala	His	Glu	Ala	Lys	Leu	Ile	Vidmar et al., 2017
integrin alpha-E precursor	P38570	19-1179	peptide-Glu602+Gly-peptide	N	MS	Ala	Pro	Leu	Glu	Gly	Phe	Gly	Ala	Schilling & Overall, 2008
Integrin beta-1	P05556		peptide-Glu463+Cys-peptide	N	MS	Tyr	Ile	Cys	Glu	Cys	Glu	Cys	Gln	Vidmar et al., 2017
Integrin beta-1	P05556		peptide-Glu530+Cys-peptide	N	MS	Asn	Asn	Gly	Glu	Cys	Val	Cys	Gly	Vidmar et al., 2017
Integrin beta-1	P05556		peptide-Glu769+Lys-peptide	N	MS	Phe	Glu	Lys	Glu	Lys	Met	Asn	Ala	Vidmar et al., 2017
Integrin beta-1	P05556		peptide-Glu631+Met-peptide	N	MS	Gln	Thr	Cys	Glu	Met	Cys	Gln	Thr	Vidmar et al., 2017
Integrin beta-1	P05556		peptide-Glu56+Gly-peptide	N	MS	Phe	Leu	Gln	Glu	Gly	Met	Pro	Thr	Vidmar et al., 2017
Integrin beta-1	P05556		peptide-Glu304+Asn-peptide	N	MS	Cys	His	Leu	Glu	Asn	Asn	Met	Tyr	Vidmar et al., 2017
Integrin beta-1	P05556		peptide-Glu523+Ile-peptide	N	MS	Asn	Ser	Ser	Glu	Ile	Cys	Ser	Asn	Vidmar et al., 2017
Integrin beta-1	P05556		peptide-Glu554+Cys-peptide	N	MS	Lys	Phe	Cys	Glu	Cys	Asp	Asn	Phe	Vidmar et al., 2017
Integrin beta-1	P05556		peptide-Glu614+Cys-peptide	N	MS	Gly	Ile	Cys	Glu	Cys	Gly	Val	Cys	Vidmar et al., 2017
Integrin beta-1	P05556		peptide-Glu493+Gly-peptide	N	MS	Arg	Cys	Asn	Glu	Gly	Arg	Val	Gly	Vidmar et al., 2017
Integrin beta-1	P05556		peptide-Glu600+Ala-peptide	N	MS	Ser	Thr	Cys	Glu	Ala	Ser	Asn	Gly	Vidmar et al., 2017
Integrin beta-1	P05556		peptide-Glu24+Asn-peptide	N	MS	Gln	Thr	Asp	Glu	Asn	Arg	Cys	Leu	Vidmar et al., 2017
Integrin beta-4	P16144		peptide-Ala27+Asn-peptide	N	MS	Gly	Thr	Leu	Ala	Asn	Arg	Cys	Lys	Vidmar et al., 2017
Integrin beta-4	P16144		peptide-Glu1708+Asn-peptide	N	MS	Gly	Leu	Ser	Glu	Asn	Val	Pro	Tyr	Vidmar et al., 2017
Integrin beta-4	P16144		peptide-Glu1045+Leu-peptide	N	MS	Val	Glu	Gly	Glu	Leu	Leu	Phe	Gln	Vidmar et al., 2017
Integrin beta-4	P16144		peptide-Glu1679+Met-peptide	N	MS	Val	Thr	Cys	Glu	Met	Ala	Gln	Gly	Vidmar et al., 2017
Integrin beta-4	P16144		peptide-Glu1787+Ala-peptide	N	MS	Gln	His	Leu	Glu	Ala	Gly	Gly	Ser	Vidmar et al., 2017
interleukin enhancer binding factor 3 isoform c variant	Q59GP7	26-49	peptide-Glu38+Ala-peptide	N	MS	Glu	Glu	Leu	Glu	Ala	Val	Gln	Asn	Schilling & Overall, 2008
interleukin enhancer binding factor 3 isoform c variant	Q59GP7	152-167	YE+ILQSVDDAAIVIK	N	MS	-	-	Tyr	Glu	Ile	Leu	Gln	Ser	Schilling & Overall, 2008
interleukin enhancer binding factor 3 isoform c variant	Q59GP7	26-49	peptide-Glu36+Leu-peptide	N	MS	Thr	Gln	Glu	Glu	Leu	Glu	Ala	Val	Schilling & Overall, 2008
interleukin enhancer binding factor 3 isoform c variant	Q59GP7	1-450	peptide-Glu187+Glu-peptide	N	MS	Val	Val	Arg	Glu	Glu	Met	Glu	Lys	Schilling & Overall, 2008
interleukin enhancer binding factor 3 isoform c variant	Q59GP7	1-450	peptide-Glu60+Gln-peptide	N	MS	Trp	Ile	Asp	Glu	Gln	Glu	Lys	Gly	Schilling & Overall, 2008
interleukin enhancer-binding factor 2	Q12905	328-356	peptide-Glu342+Ile-peptide	N	MS	Leu	Ala	Ser	Glu	Ile	Ser	Thr	Trp	Schilling & Overall, 2008
interleukin enhancer-binding factor 2	Q12905	60-80	NQDLAPNSAE+QASILSLVTK	N	MS	Asn	Ser	Ala	Glu	Gln	Ala	Ser	Ile	Schilling & Overall, 2008
interleukin enhancer-binding factor 2	Q12905	1-390	peptide-Glu55+Ala-peptide	N	MS	Ser	Phe	Ser	Glu	Ala	Leu	Leu	Lys	Schilling & Overall, 2008
Interleukin enhancer-binding factor 3	Q12906		peptide-Glu39+Arg-peptide	N	MS	Ser	His	Thr	Glu	Arg	Ala	Leu	Lys	Vidmar et al., 2017
Interleukin enhancer-binding factor 3	Q12906		peptide-Glu487+Ala-peptide	N	MS	Glu	Glu	Thr	Glu	Ala	Lys	Pro	Ala	Vidmar et al., 2017
Interleukin enhancer-binding factor 3	Q12906		peptide-Glu27+Leu-peptide	N	MS	Thr	Gln	Glu	Glu	Leu	Glu	Ala	Val	Vidmar et al., 2017
Interleukin enhancer-binding factor 3	Q12906		peptide-Glu29+Ala-peptide	N	MS	Glu	Glu	Leu	Glu	Ala	Val	Gln	Asn	Vidmar et al., 2017
Interleukin enhancer-binding factor 3 isoform 4	Q12906-4	1-698	peptide-Glu29+Ala-peptide	N	MS	Glu	Glu	Leu	Glu	Ala	Val	Gln	Asn	Schilling & Overall, 2008
Interleukin enhancer-binding factor 3 isoform 4	Q12906-4	1-698	YE+ILQSVDDAAIVIK	N	MS	-	-	Tyr	Glu	Ile	Leu	Gln	Ser	Schilling & Overall, 2008
Interleukin enhancer-binding factor 3 isoform 4	Q12906-4	1-698	peptide-Glu27+Leu-peptide	N	MS	Thr	Gln	Glu	Glu	Leu	Glu	Ala	Val	Schilling & Overall, 2008
Interleukin enhancer-binding factor 3 isoform 4	Q12906-4	1-698	peptide-Glu178+Glu-peptide	N	MS	Val	Val	Arg	Glu	Glu	Met	Glu	Lys	Schilling & Overall, 2008
Interleukin enhancer-binding factor 3 isoform 4	Q12906-4	1-698	peptide-Glu51+Gln-peptide	N	MS	Trp	Ile	Asp	Glu	Gln	Glu	Lys	Gly	Schilling & Overall, 2008
Interleukin-18	Q14116		peptide-Glu166+Arg-peptide	N	MS	Cys	Glu	Lys	Glu	Arg	Asp	Leu	Phe	Vidmar et al., 2017
Interleukin-18	Q14116		peptide-Asp168+Leu-peptide	N	MS	Lys	Glu	Arg	Asp	Leu	Phe	Lys	Leu	Vidmar et al., 2017
Interleukin-18	Q14116		peptide-Glu113+Asn-peptide	N	MS	Leu	Ser	Cys	Glu	Asn	Lys	Ile	Ile	Vidmar et al., 2017
Inverted formin-2	Q27J81		peptide-Lys407+Val-peptide	N	MS	Ser	Ile	Leu	Lys	Val	Ser	Gln	Pro	Vidmar et al., 2017
iron-sulfur cluster scaffold protein Nfu	Q7Z5B2	1-254	peptide-Glu82+Thr-peptide	N	MS	Pro	Val	Leu	Glu	Thr	Arg	Thr	Met	Schilling & Overall, 2008
Isoamyl acetate-hydrolyzing esterase 1 homolog	Q2TAA2		peptide-Glu239+Leu-peptide	N	MS	Ala	Lys	Pro	Glu	Leu	Ser	Leu	Leu	Vidmar et al., 2017
Isochorismatase domain-containing protein 2	Q96AB3		peptide-Glu179+Ile-peptide	N	MS	Gln	Phe	Lys	Glu	Ile	Gln	Lys	Leu	Vidmar et al., 2017
isocitrate dehydrogenase	Q13584	393-409	LNE+HFLNTTDFLDTIK	N	MS	-	Leu	Asn	Glu	His	Phe	Leu	Asn	Schilling & Overall, 2008
Isocitrate dehydrogenase [NADP] cytoplasmic	O75874	2-414	peptide-Glu396+Phe-peptide	N	MS	Asn	Thr	Phe	Glu	Phe	Met	Asp	Lys	Schilling & Overall, 2008
Isocitrate dehydrogenase [NADP] cytoplasmic	O75874		peptide-Glu403+Asn-peptide	N	MS	Lys	Leu	Gly	Glu	Asn	Leu	Lys	Ile	Vidmar et al., 2017
isocitrate dehydrogenase [NADP], mitochondrial precursor	P48735	426-442	LNE+HFLNTTDFLDTIK	N	MS	-	Leu	Asn	Glu	His	Phe	Leu	Asn	Schilling & Overall, 2008
Isoleucine--tRNA ligase, mitochondrial	Q9NSE4		peptide-Asp62+Thr-peptide	N	MS	Arg	Tyr	Arg	Asp	Thr	Val	Leu	Leu	Vidmar et al., 2017
Isoleucine--tRNA ligase, mitochondrial	Q9NSE4		peptide-Glu938+Ser-peptide	N	MS	Met	Ala	Ser	Glu	Ser	Thr	Leu	Leu	Vidmar et al., 2017
Isovaleryl-CoA dehydrogenase, mitochondrial	P26440		peptide-Glu59+His-peptide	N	MS	Phe	Leu	Gln	Glu	His	Leu	Ala	Pro	Vidmar et al., 2017
ITPase	Q5NT82	1-41	peptide-Glu22+Tyr-peptide	N	MS	Asp	Leu	Pro	Glu	Tyr	Gln	Gly	Glu	Schilling & Overall, 2008
Jab1/MPN domain metalloenzyme	Q92905	2-334	peptide-Asp325+Lys-peptide	N	MS	Val	Ile	Lys	Asp	Lys	Leu	Phe	Asn	Schilling & Overall, 2008
Junctional adhesion molecule A	Q9Y624		peptide-Gly27+Ser-peptide	N	MS	Leu	Ala	Leu	Gly	Ser	Val	Thr	Val	Vidmar et al., 2017
karatin, type I cytoskeletal 18	P05783	2-430	peptide-Glu200+Thr-peptide	N	MS	Leu	Gln	Leu	Glu	Thr	Glu	Ile	Glu	Schilling & Overall, 2008
karatin, type I cytoskeletal 18	P05783	2-430	peptide-Glu236+Val-peptide	N	MS	Leu	Thr	Val	Glu	Val	Asp	Ala	Pro	Schilling & Overall, 2008
katanin p80 subunit B 1 variant	Q59G59	1-370	peptide-Glu244+Leu-peptide	N	MS	Gln	Gln	Ala	Glu	Leu	Val	Asp	Glu	Schilling & Overall, 2008
katanin p80 WD40-containing subunit B1	Q9BVA0	1-655	peptide-Glu481+Leu-peptide	N	MS	Gln	Gln	Ala	Glu	Leu	Val	Asp	Glu	Schilling & Overall, 2008
Keratin, type I cytoskeletal 18	P05783		peptide-Glu220+Val-peptide	N	MS	His	Glu	Glu	Glu	Val	Lys	Gly	Leu	Vidmar et al., 2017
Kinectin	Q86UP2		peptide-Glu667+Leu-peptide	N	MS	Ala	Ala	His	Glu	Leu	Glu	Lys	Met	Vidmar et al., 2017
Kinectin	Q86UP2		peptide-Glu219+Asn-peptide	N	MS	Gln	Lys	Thr	Glu	Asn	Val	Phe	Val	Vidmar et al., 2017
Kinectin	Q86UP2		peptide-Glu367+Arg-peptide	N	MS	Thr	Glu	Lys	Glu	Arg	Ser	Asn	Val	Vidmar et al., 2017
Kinectin	Q86UP2		peptide-Glu499+Val-peptide	N	MS	Arg	Trp	Glu	Glu	Val	Gln	Ser	Tyr	Vidmar et al., 2017
Kinectin	Q86UP2		peptide-Glu528+Val-peptide	N	MS	Lys	Glu	Asn	Glu	Val	Gln	Ser	Leu	Vidmar et al., 2017
Kinectin	Q86UP2		peptide-Glu1275+Arg-peptide	N	MS	Glu	Gln	Asn	Glu	Arg	Gln	Lys	Val	Vidmar et al., 2017
Kinectin	Q86UP2		peptide-Glu699+Phe-peptide	N	MS	Lys	Met	Glu	Glu	Phe	Lys	Ile	Leu	Vidmar et al., 2017
Kinectin	Q86UP2		peptide-Glu425+Asn-peptide	N	MS	Leu	Lys	Gln	Glu	Asn	Gly	Ile	Leu	Vidmar et al., 2017
Kinectin	Q86UP2		peptide-Glu261+Gly-peptide	N	MS	Asp	Gln	Val	Glu	Gly	Ile	Gln	Lys	Vidmar et al., 2017
Kinectin	Q86UP2		peptide-Glu996+Leu-peptide	N	MS	Pro	His	Glu	Glu	Leu	Leu	Lys	Val	Vidmar et al., 2017
Kinectin	Q86UP2		peptide-Glu887+Lys-peptide	N	MS	Glu	Glu	Lys	Glu	Lys	Asp	Leu	Ala	Vidmar et al., 2017
Kinectin	Q86UP2		peptide-Glu874+Gln-peptide	N	MS	Gly	Lys	Glu	Glu	Gln	Met	Asn	Thr	Vidmar et al., 2017
Kinectin	Q86UP2		peptide-Glu386+His-peptide	N	MS	Leu	Glu	Lys	Glu	His	Asn	Val	Phe	Vidmar et al., 2017
Kinectin	Q86UP2		peptide-Glu626+Arg-peptide	N	MS	Leu	Ala	Ser	Glu	Arg	Asp	Arg	Leu	Vidmar et al., 2017
Kinectin	Q86UP2		peptide-Glu864+Leu-peptide	N	MS	Lys	Val	Gln	Glu	Leu	Gln	Asn	Leu	Vidmar et al., 2017
Kinectin	Q86UP2		peptide-Glu669+Lys-peptide	N	MS	His	Glu	Leu	Glu	Lys	Met	Gln	Gln	Vidmar et al., 2017
Kinectin	Q86UP2		peptide-Glu579+Ala-peptide	N	MS	Glu	Gln	Asn	Glu	Ala	Leu	Lys	Ala	Vidmar et al., 2017
Kinectin	Q86UP2		peptide-Glu336+Lys-peptide	N	MS	Gln	Leu	Gln	Glu	Lys	Asp	Lys	Leu	Vidmar et al., 2017
Kinectin	Q86UP2		peptide-Glu969+Asn-peptide	N	MS	Val	Gln	Asp	Glu	Asn	Lys	Leu	Phe	Vidmar et al., 2017
Kinectin	Q86UP2		peptide-Glu1291+Leu-peptide	N	MS	Gln	Ser	Leu	Glu	Leu	Ile	Gln	Ser	Vidmar et al., 2017
Kinectin	Q86UP2		peptide-Glu805+Lys-peptide	N	MS	Val	Ile	His	Glu	Lys	Asp	Gly	Lys	Vidmar et al., 2017
Kinectin	Q86UP2		peptide-Glu447+Leu-peptide	N	MS	Gln	Ser	Ala	Glu	Leu	Asn	Lys	Leu	Vidmar et al., 2017
Kinectin	Q86UP2		peptide-Glu953+Ser-peptide	N	MS	Lys	Glu	Arg	Glu	Ser	Asp	Leu	Ser	Vidmar et al., 2017
Kinectin	Q86UP2		peptide-Glu250+Val-peptide	N	MS	Asp	Lys	Arg	Glu	Val	Ile	Asp	Leu	Vidmar et al., 2017
Kinectin	Q86UP2		peptide-Glu1127+Met-peptide	N	MS	Glu	Ala	Asp	Glu	Met	His	Thr	Leu	Vidmar et al., 2017
Kinectin	Q86UP2		peptide-Glu905+Ser-peptide	N	MS	Glu	Glu	Asn	Glu	Ser	Leu	Lys	Ala	Vidmar et al., 2017
Kinectin	Q86UP2		peptide-Glu326+Leu-peptide	N	MS	Ser	Lys	Gly	Glu	Leu	Thr	Thr	Leu	Vidmar et al., 2017
Kinectin	Q86UP2		peptide-Glu828+Lys-peptide	N	MS	Ala	Asn	Lys	Glu	Lys	Thr	Val	Gln	Vidmar et al., 2017
Kinectin	Q86UP2		peptide-Glu1254+Leu-peptide	N	MS	Gln	Asn	Glu	Glu	Leu	Asn	Leu	Leu	Vidmar et al., 2017
kinesin-1 heavy chain	P33176	1-963	peptide-Glu417+Arg-peptide	N	MS	Thr	Asp	Ala	Glu	Arg	Arg	Lys	Cys	Schilling & Overall, 2008
Kinetochore protein Spc24	Q8NBT2		peptide-Glu9+Val-peptide	N	MS	Asp	Ile	Glu	Glu	Val	Ser	Gln	Gly	Vidmar et al., 2017
L-lactate dehydrogenase A chain	P00338		peptide-Glu312+Glu-peptide	N	MS	Thr	Ser	Glu	Glu	Glu	Ala	Arg	Leu	Vidmar et al., 2017
L-lactate dehydrogenase A chain	P00338		peptide-Glu313+Ala-peptide	N	MS	Ser	Glu	Glu	Glu	Ala	Arg	Leu	Lys	Vidmar et al., 2017
L-lactate dehydrogenase B chain	P07195	60-77	GE+MMDLQHGSLFLQTPK	N	MS	-	-	Gly	Glu	Met	Met	Asp	Leu	Schilling & Overall, 2008
L-lactate dehydrogenase B chain	P07195	279-299	GMYGIENE+VFLSLPCILNAR	N	MS	Ile	Glu	Asn	Glu	Val	Phe	Leu	Ser	Schilling & Overall, 2008
L-lactate dehydrogenase B chain	P07195	2-334	peptide-Glu48+Leu-peptide	N	MS	Leu	Ala	Asp	Glu	Leu	Ala	Leu	Val	Schilling & Overall, 2008
L-lactate dehydrogenase B chain	P07195	2-334	peptide-Asp83+Tyr-peptide	N	MS	Ala	Asp	Lys	Asp	Tyr	Ser	Val	Thr	Schilling & Overall, 2008
L-lactate dehydrogenase B chain	P07195	2-334	peptide-Asp330+Leu-peptide	N	MS	Ile	Gln	Lys	Asp	Leu	Lys	Asp	Leu	Schilling & Overall, 2008
L-lactate dehydrogenase B chain	P07195	2-334	peptide-Glu313+Val-peptide	N	MS	Lys	Asp	Asp	Glu	Val	Ala	Gln	Leu	Schilling & Overall, 2008
L-lactate dehydrogenase B chain	P07195	2-334	peptide-Glu103+Gly-peptide	N	MS	Arg	Gln	Gln	Glu	Gly	Glu	Ser	Arg	Schilling & Overall, 2008
L-lactate dehydrogenase B chain	P07195		peptide-Glu214+Leu-peptide	N	MS	Ser	Leu	Gln	Glu	Leu	Asn	Pro	Glu	Vidmar et al., 2017
L-lactate dehydrogenase B chain	P07195		peptide-Glu6+Lys-peptide	N	MS	Thr	Leu	Lys	Glu	Lys	Leu	Ile	Ala	Vidmar et al., 2017
L-lactate dehydrogenase B chain	P07195		peptide-Glu218+Met-peptide	N	MS	Leu	Asn	Pro	Glu	Met	Gly	Thr	Asp	Vidmar et al., 2017
La-related protein 4B	Q92615		peptide-Glu85+Val-peptide	N	MS	Ala	Trp	Glu	Glu	Val	Ala	Gly	His	Vidmar et al., 2017
La-related protein 4B	Q92615		peptide-Glu212+Val-peptide	N	MS	Leu	Ile	Val	Glu	Val	Leu	Arg	Ser	Vidmar et al., 2017
lactonizing lipase precursor	P26876	27-311	peptide-Asp64+Gly-peptide	N		Leu	Arg	Arg	Asp	Gly	Ala	Gln	Val	Jaeger et al., 1993
lactonizing lipase precursor	P26876	27-311	peptide-Glu72+Val-peptide	N		Tyr	Val	Thr	Glu	Val	Ser	Gln	Leu	Jaeger et al., 1993
lactoylglutathione lyase	Q04760	2-184	peptide-Asp134+Val-peptide	N	MS	Ala	Val	Pro	Asp	Val	Tyr	Ser	Ala	Schilling & Overall, 2008
Lactoylglutathione lyase	Q04760		peptide-Glu144+Leu-peptide	N	MS	Arg	Phe	Glu	Glu	Leu	Gly	Val	Lys	Vidmar et al., 2017
Lactoylglutathione lyase	Q04760		peptide-Glu111+Thr-peptide	N	MS	Glu	Asp	Asp	Glu	Thr	Gln	Ser	Tyr	Vidmar et al., 2017
Lactoylglutathione lyase	Q04760		peptide-Glu87+Lys-peptide	N	MS	Glu	Lys	Asp	Glu	Lys	Ile	Ala	Trp	Vidmar et al., 2017
Lactoylglutathione lyase	Q04760		peptide-Glu173+Ile-peptide	N	MS	Tyr	Trp	Ile	Glu	Ile	Leu	Asn	Pro	Vidmar et al., 2017
lamin-B1	P20700	547-577	peptide-Glu568+Leu-peptide	N	MS	Val	Glu	Glu	Glu	Leu	Phe	His	Gln	Schilling & Overall, 2008
lamin-B1	P20700	2-586	peptide-Glu187+Thr-peptide	N	MS	Leu	Ala	Asp	Glu	Thr	Leu	Leu	Lys	Schilling & Overall, 2008
lamin-B1	P20700	2-586	peptide-Glu160+Gly-peptide	N	MS	Lys	Ser	Leu	Glu	Gly	Asp	Leu	Glu	Schilling & Overall, 2008
lamina-associated polypeptide 2 isoform alpha	P42166	60-86	peptide-Glu70+Arg-peptide	N	MS	Ser	Asp	Glu	Glu	Arg	Glu	Pro	Thr	Schilling & Overall, 2008
lamina-associated polypeptide 2, isoform alpha	P42166	2-694	peptide-Glu143+Lys-peptide	N	MS	Lys	Leu	Tyr	Glu	Lys	Lys	Leu	Leu	Schilling & Overall, 2008
Lamina-associated polypeptide 2, isoforms beta/gamma	P42167		peptide-Glu218+His-peptide	N	MS	Arg	Arg	Val	Glu	His	Asn	Gln	Ser	Vidmar et al., 2017
Lamina-associated polypeptide 2, isoforms beta/gamma	P42167		peptide-Glu313+Phe-peptide	N	MS	Pro	Ile	Thr	Glu	Phe	Ser	Asp	Ile	Vidmar et al., 2017
Lamina-associated polypeptide 2, isoforms beta/gamma	P42167		peptide-Glu291+Ser-peptide	N	MS	Ser	Ser	Asn	Glu	Ser	Leu	Val	Val	Vidmar et al., 2017
Lamina-associated polypeptide 2, isoforms beta/gamma	P42167		peptide-Glu266+His-peptide	N	MS	Glu	Thr	Ser	Glu	His	Phe	Arg	Ile	Vidmar et al., 2017
Laminin subunit beta-1	P07942		peptide-Thr88+Leu-peptide	N	MS	Tyr	His	Glu	Thr	Leu	Asn	Pro	Asp	Vidmar et al., 2017
Large neutral amino acids transporter small subunit 1	Q01650		peptide-Glu24+Lys-peptide	N	MS	Glu	Ala	Arg	Glu	Lys	Met	Leu	Ala	Vidmar et al., 2017
Large proline-rich protein BAG6	P46379		peptide-Glu1096+Ser-peptide	N	MS	Glu	Val	Gln	Glu	Ser	Tyr	Arg	Gln	Vidmar et al., 2017
Large proline-rich protein BAG6	P46379		peptide-Glu982+Ala-peptide	N	MS	Thr	Ala	Glu	Glu	Ala	Met	Ser	Arg	Vidmar et al., 2017
Large proline-rich protein BAG6	P46379		peptide-Glu1083+Ser-peptide	N	MS	Thr	Ser	Pro	Glu	Ser	Leu	Ser	Arg	Vidmar et al., 2017
LARS protein	A7E266	350-370	ELMGEE+ILGASLSAPLTSYK	N	MS	Met	Gly	Glu	Glu	Ile	Leu	Gly	Ala	Schilling & Overall, 2008
LDLR chaperone MESD	Q14696		peptide-Glu186+Gly-peptide	N	MS	Val	Thr	Leu	Glu	Gly	Gln	Val	Tyr	Vidmar et al., 2017
LDLR chaperone MESD	Q14696		peptide-Glu224+Asn-peptide	N	MS	Ser	Lys	Glu	Glu	Asn	Arg	Ala	Gly	Vidmar et al., 2017
LDLR chaperone MESD	Q14696		peptide-Glu68+Gln-peptide	N	MS	Arg	Leu	Leu	Glu	Gln	Trp	Glu	Lys	Vidmar et al., 2017
Leucine-rich repeat flightless-interacting protein 1	Q32MZ4		peptide-Glu258+Ile-peptide	N	MS	Leu	Asn	Ser	Glu	Ile	Ala	Thr	Asn	Vidmar et al., 2017
Leucine-rich repeat flightless-interacting protein 1	Q32MZ4		peptide-Glu787+Ser-peptide	N	MS	Phe	Asn	Pro	Glu	Ser	Arg	Glu	Asp	Vidmar et al., 2017
Leucine-rich repeat flightless-interacting protein 1	Q32MZ4		peptide-Glu465+Thr-peptide	N	MS	Gln	Glu	Leu	Glu	Thr	Ser	Thr	Gly	Vidmar et al., 2017
Leucine-rich repeat flightless-interacting protein 1	Q32MZ4		peptide-Glu730+His-peptide	N	MS	Thr	Leu	Pro	Glu	His	Glu	Ser	Pro	Vidmar et al., 2017
Leucine-rich repeat flightless-interacting protein 1	Q32MZ4		peptide-Glu625+Val-peptide	N	MS	Ala	Gln	Asn	Glu	Val	Thr	Glu	Asn	Vidmar et al., 2017
Leucine-rich repeat flightless-interacting protein 1	Q32MZ4		peptide-Glu249+Lys-peptide	N	MS	Glu	Met	Leu	Glu	Lys	His	Gly	Ile	Vidmar et al., 2017
Leucine-rich repeat flightless-interacting protein 1	Q32MZ4		peptide-Glu607+Glu-peptide	N	MS	Glu	Ile	Lys	Glu	Glu	Glu	Gln	Val	Vidmar et al., 2017
Leucine-rich repeat flightless-interacting protein 1	Q32MZ4		peptide-Glu24+Ala-peptide	N	MS	Lys	Leu	Ala	Glu	Ala	Arg	Leu	Ala	Vidmar et al., 2017
Leucine-rich repeat flightless-interacting protein 1	Q32MZ4		peptide-Glu594+Leu-peptide	N	MS	Val	Lys	Lys	Glu	Leu	Thr	Tyr	Gln	Vidmar et al., 2017
Leucine-rich repeat flightless-interacting protein 1	Q32MZ4		peptide-Glu284+Leu-peptide	N	MS	Thr	Lys	Glu	Glu	Leu	Asn	Ala	Leu	Vidmar et al., 2017
Leucine-rich repeat flightless-interacting protein 1	Q32MZ4		peptide-Glu480+Ala-peptide	N	MS	Thr	Asn	Gln	Glu	Ala	Ala	Glu	Pro	Vidmar et al., 2017
Leucine-rich repeat flightless-interacting protein 1	Q32MZ4		peptide-Glu307+Ile-peptide	N	MS	Val	Lys	Asn	Glu	Ile	Val	Ala	Asn	Vidmar et al., 2017
leucine-rich repeat-containing protein 47	Q8N1G4	192-205	ELSPD+IAHLASLK	N	MS	Leu	Ser	Pro	Asp	Ile	Ala	His	Leu	Schilling & Overall, 2008
leucine-rich repeat-containing protein 59	Q96AG4	14-33	LDGNE+LDLSLSDLNEVPVK	N	MS	Asp	Gly	Asn	Glu	Leu	Asp	Leu	Ser	Schilling & Overall, 2008
leucine-rich repeat-containing protein 59	Q96AG4	1-307	peptide-Glu156+Arg-peptide	N	MS	Ala	Asp	Gln	Glu	Arg	Glu	Arg	Gln	Schilling & Overall, 2008
Leucine-rich repeat-containing protein 59	Q96AG4		peptide-Glu270+Leu-peptide	N	MS	Arg	Val	Thr	Glu	Leu	Gln	Gln	Gln	Vidmar et al., 2017
Leucine-rich repeat-containing protein 59	Q96AG4		peptide-Glu202+Tyr-peptide	N	MS	Arg	Arg	Lys	Glu	Tyr	Asp	Ala	Leu	Vidmar et al., 2017
Leukocyte cell-derived chemotaxin 1	O75829		peptide-Phe256+Asn-peptide	N	MS	Ser	Gln	Ala	Phe	Asn	Pro	Asp	Asn	Vidmar et al., 2017
Leukocyte elastase inhibitor	P30740		peptide-Asn270+Val-peptide	N	MS	Ile	Glu	Val	Asn	Val	Ser	Leu	Pro	Vidmar et al., 2017
Leukocyte elastase inhibitor	P30740		peptide-Glu257+Trp-peptide	N	MS	Lys	Leu	His	Glu	Trp	Thr	Lys	Pro	Vidmar et al., 2017
Leukocyte elastase inhibitor	P30740		peptide-Glu239+Ser-peptide	N	MS	Ile	Glu	Asp	Glu	Ser	Thr	Gly	Leu	Vidmar et al., 2017
Leukotriene A-4 hydrolase	P09960		peptide-Glu591+His-peptide	N	MS	Thr	Tyr	Gln	Glu	His	Lys	Ala	Ser	Vidmar et al., 2017
LIM and calponin homology domains-containing protein 1	Q9UPQ0		peptide-Glu901+Gly-peptide	N	MS	Ser	Leu	Thr	Glu	Gly	Ala	Leu	Ala	Vidmar et al., 2017
LIM and calponin homology domains-containing protein 1	Q9UPQ0		peptide-Glu631+Lys-peptide	N	MS	Ala	Thr	Thr	Glu	Lys	Thr	Glu	Pro	Vidmar et al., 2017
LIM and SH3 domain protein 1	Q14847		peptide-Glu106+Leu-peptide	N	MS	Asp	Thr	Pro	Glu	Leu	Gln	Arg	Ile	Vidmar et al., 2017
LIM and SH3 domain protein 1	Q14847		peptide-Glu127+Lys-peptide	N	MS	Glu	Glu	Phe	Glu	Lys	Ser	Arg	Met	Vidmar et al., 2017
LIM and SH3 domain protein 1	Q14847		peptide-Glu79+Leu-peptide	N	MS	Gln	Gln	Ser	Glu	Leu	Gln	Ser	Gln	Vidmar et al., 2017
LIM and SH3 domain protein 1	Q14847		peptide-Glu91+Lys-peptide	N	MS	Glu	Glu	Phe	Glu	Lys	Asn	Lys	Gly	Vidmar et al., 2017
LIM and SH3 domain protein 1	Q14847		peptide-Glu89+Phe-peptide	N	MS	Tyr	Lys	Glu	Glu	Phe	Glu	Lys	Asn	Vidmar et al., 2017
LIM and SH3 domain protein 1	Q14847		peptide-Glu70+Asn-peptide	N	MS	Asp	Thr	Pro	Glu	Asn	Leu	Arg	Leu	Vidmar et al., 2017
LIM domain and actin-binding protein 1	Q9UHB6		peptide-Glu351+Val-peptide	N	MS	Val	Lys	Ser	Glu	Val	Gln	Gln	Pro	Vidmar et al., 2017
LIM domain and actin-binding protein 1	Q9UHB6		peptide-Glu264+Thr-peptide	N	MS	Arg	Leu	Ser	Glu	Thr	Ser	Ile	Lys	Vidmar et al., 2017
LIM domain and actin-binding protein 1	Q9UHB6		peptide-Glu252+Ser-peptide	N	MS	Glu	Lys	Asn	Glu	Ser	Arg	Arg	Asn	Vidmar et al., 2017
LIM domain and actin-binding protein 1	Q9UHB6		peptide-Glu329+Asn-peptide	N	MS	Ser	Ala	Asn	Glu	Asn	Ser	Leu	Ala	Vidmar et al., 2017
LIM domain and actin-binding protein 1	Q9UHB6		peptide-Glu179+Asn-peptide	N	MS	Glu	Ile	Ser	Glu	Asn	Thr	Asp	Ala	Vidmar et al., 2017
LIM domain and actin-binding protein 1	Q9UHB6		peptide-Glu718+Phe-peptide	N	MS	Phe	Ala	Glu	Glu	Phe	Thr	Thr	Gln	Vidmar et al., 2017
LIM domain and actin-binding protein 1	Q9UHB6		peptide-Glu637+Asn-peptide	N	MS	Lys	Gln	Val	Glu	Asn	Ala	Lys	Ala	Vidmar et al., 2017
LIM domain and actin-binding protein 1	Q9UHB6		peptide-Glu235+Ile-peptide	N	MS	Asp	Asp	Leu	Glu	Ile	Gly	Pro	Gly	Vidmar et al., 2017
lin-7 homolog C variant	Q53FX5	1-197	peptide-Glu45+Phe-peptide	N	MS	Leu	Gln	Ser	Glu	Phe	Cys	Asn	Ala	Schilling & Overall, 2008
Long-chain-fatty-acid--CoA ligase 4	O60488		peptide-Glu663+Arg-peptide	N	MS	Met	Lys	Leu	Glu	Arg	Phe	Glu	Ile	Vidmar et al., 2017
Long-chain-fatty-acid--CoA ligase 4	O60488		peptide-Glu479+Val-peptide	N	MS	Thr	Val	Thr	Glu	Val	Thr	Asp	Tyr	Vidmar et al., 2017
Long-chain-fatty-acid--CoA ligase 4	O60488		peptide-Glu695+Leu-peptide	N	MS	Lys	Arg	Lys	Glu	Leu	Arg	Asn	His	Vidmar et al., 2017
Low molecular weight phosphotyrosine protein phosphatase	P24666		peptide-Glu24+Ala-peptide	N	MS	Pro	Ile	Ala	Glu	Ala	Val	Phe	Arg	Vidmar et al., 2017
lupus La protein	P05455	91-109	SPSKPLPE+VTDEYKNDVK	N	MS	Pro	Leu	Pro	Glu	Val	Thr	Asp	Glu	Schilling & Overall, 2008
lupus La protein	P05455	1-408	peptide-Glu247+Asp-peptide	N	MS	Thr	Cys	Arg	Glu	Asp	Leu	His	Ile	Schilling & Overall, 2008
lupus La protein	P05455	1-408	peptide-Glu129+Trp-peptide	N	MS	Asp	Ile	Lys	Glu	Trp	Leu	Glu	Asp	Schilling & Overall, 2008
Lupus La protein	P05455		peptide-Glu281+Ala-peptide	N	MS	Lys	Ala	Lys	Glu	Ala	Leu	Gly	Lys	Vidmar et al., 2017
Lupus La protein	P05455		peptide-Glu202+Ala-peptide	N	MS	Asn	Lys	Val	Glu	Ala	Lys	Leu	Arg	Vidmar et al., 2017
Lupus La protein	P05455		peptide-Glu212+Ala-peptide	N	MS	Gln	Glu	Gln	Glu	Ala	Lys	Gln	Lys	Vidmar et al., 2017
Lupus La protein	P05455		peptide-Glu313+Ala-peptide	N	MS	Val	Glu	Lys	Glu	Ala	Leu	Lys	Lys	Vidmar et al., 2017
Lupus La protein	P05455		peptide-Glu258+Ile-peptide	N	MS	Asn	His	Gly	Glu	Ile	Lys	Trp	Ile	Vidmar et al., 2017
Lysine--tRNA ligase	Q15046		peptide-Glu566+Val-peptide	N	MS	Asn	Ile	Lys	Glu	Val	Leu	Leu	Phe	Vidmar et al., 2017
Lysine--tRNA ligase	Q15046		peptide-Glu8+Val-peptide	N	MS	Gln	Ala	Ala	Glu	Val	Lys	Val	Asp	Vidmar et al., 2017
Lysosomal alpha-glucosidase	P10253		peptide-Ala791+Ala-peptide	N	MS	Pro	Pro	Pro	Ala	Ala	Pro	Arg	Glu	Vidmar et al., 2017
Lysosomal alpha-mannosidase	O00754		peptide-Glu953+Thr-peptide	N	MS	Arg	Leu	Gln	Glu	Thr	Thr	Leu	Val	Vidmar et al., 2017
Lysosome-associated membrane glycoprotein 2	P13473		peptide-Glu139+Leu-peptide	N	MS	Thr	Val	Asp	Glu	Leu	Leu	Ala	Ile	Vidmar et al., 2017
lysyl-tRNA synthetase	Q15046	164-175	SEEE+FIHINNK	N	MS	Ser	Glu	Glu	Glu	Phe	Ile	His	Ile	Schilling & Overall, 2008
m7GpppX diphosphatase	Q96C86		peptide-Glu55+Ser-peptide	N	MS	Val	Leu	Arg	Glu	Ser	Ala	Arg	Asp	Vidmar et al., 2017
macrophage migration inhibitory factor	P14174	2-115	peptide-Asp45+Gln-peptide	N	MS	Val	Val	Pro	Asp	Gln	Leu	Met	Ala	Schilling & Overall, 2008
macrophage migration inhibitory factor	P14174	2-115	peptide-Glu86+Arg-peptide	N	MS	Leu	Leu	Ala	Glu	Arg	Leu	Arg	Ile	Schilling & Overall, 2008
Macrophage-capping protein	P40121		peptide-Glu329+Ile-peptide	N	MS	Thr	Gln	Val	Glu	Ile	Leu	Pro	Gln	Vidmar et al., 2017
Macrophage-capping protein	P40121		peptide-Asp286+Asn-peptide	N	MS	Phe	Val	Leu	Asp	Asn	Gly	Leu	Cys	Vidmar et al., 2017
Macrophage-capping protein	P40121		peptide-Glu27+Lys-peptide	N	MS	Trp	Arg	Val	Glu	Lys	Leu	Lys	Pro	Vidmar et al., 2017
Macrophage-capping protein	P40121		peptide-Glu219+Met-peptide	N	MS	Glu	Pro	Ala	Glu	Met	Ile	Gln	Val	Vidmar et al., 2017
Macrophage-capping protein	P40121		peptide-Glu305+Arg-peptide	N	MS	Asn	Glu	Lys	Glu	Arg	Gln	Ala	Ala	Vidmar et al., 2017
Macrophage-capping protein	P40121		peptide-Glu314+Gly-peptide	N	MS	Gln	Val	Ala	Glu	Gly	Phe	Ile	Ser	Vidmar et al., 2017
Major vault protein	Q14764		peptide-Glu780+Val-peptide	N	MS	Leu	Glu	Leu	Glu	Val	Ser	Lys	Ala	Vidmar et al., 2017
Major vault protein	Q14764		peptide-Glu376+Arg-peptide	N	MS	Val	Val	Glu	Glu	Arg	Gln	Ala	Ile	Vidmar et al., 2017
Major vault protein	Q14764		peptide-Glu689+Arg-peptide	N	MS	Gly	Arg	Leu	Glu	Arg	Gln	Lys	Ile	Vidmar et al., 2017
malate dehydrogenase, cytoplasmic	P40925	79-92	DLD+VAILVGSMPR	N	MS	-	Asp	Leu	Asp	Val	Ala	Ile	Leu	Schilling & Overall, 2008
malate dehydrogenase, cytoplasmic	P40925	2-334	peptide-Glu74+Asp-peptide	N	MS	Thr	Asp	Lys	Glu	Asp	Val	Ala	Phe	Schilling & Overall, 2008
Malate dehydrogenase, cytoplasmic	P40925		peptide-Glu301+Gly-peptide	N	MS	Lys	Phe	Val	Glu	Gly	Leu	Pro	Ile	Vidmar et al., 2017
Malate dehydrogenase, mitochondrial	P40926		peptide-Glu322+Leu-peptide	N	MS	Ala	Ile	Pro	Glu	Leu	Lys	Ala	Ser	Vidmar et al., 2017
Malate dehydrogenase, mitochondrial	P40926		peptide-Glu274+Cys-peptide	N	MS	Gly	Val	Val	Glu	Cys	Ser	Phe	Val	Vidmar et al., 2017
malate dehydrogenase, mitochondrial precursor	P40926	91-104	GCD+VVVIPAGVPR	N	MS	-	Gly	Cys	Asp	Val	Val	Val	Ile	Schilling & Overall, 2008
malate dehydrogenase, mitochondrial precursor	P40926	25-338	peptide-Glu72+Thr-peptide	N	MS	Ser	His	Ile	Glu	Thr	Lys	Ala	Ala	Schilling & Overall, 2008
Male-enhanced antigen 1	Q16626		peptide-Thr23+Met-peptide	N	MS	Gly	Gly	Asp	Thr	Met	Gly	Pro	Glu	Vidmar et al., 2017
Male-enhanced antigen 1	Q16626		peptide-Glu161+Ile-peptide	N	MS	Trp	Ala	Arg	Glu	Ile	Ser	Asp	Ala	Vidmar et al., 2017
Maleylacetoacetate isomerase	O43708		peptide-Glu197+Ala-peptide	N	MS	Leu	Val	Leu	Glu	Ala	Phe	Gln	Val	Vidmar et al., 2017
matrin-3	P43243	132-146	ITPE+NLPQILLQLK	N	MS	Ile	Thr	Pro	Glu	Asn	Leu	Pro	Gln	Schilling & Overall, 2008
Melanoma inhibitory activity protein 3	Q5JRA6		peptide-Glu1703+Phe-peptide	N	MS	Pro	Arg	Ser	Glu	Phe	Gly	Ser	Val	Vidmar et al., 2017
Melanoma inhibitory activity protein 3	Q5JRA6		peptide-Glu1609+Arg-peptide	N	MS	Arg	Ala	Ala	Glu	Arg	Ala	Ile	Ala	Vidmar et al., 2017
Melanoma-associated antigen D2	Q9UNF1		peptide-Glu17+Ala-peptide	N	MS	Phe	Gln	Ala	Glu	Ala	Ser	Glu	Lys	Vidmar et al., 2017
Melanoma-associated antigen D2	Q9UNF1		peptide-Glu50+Val-peptide	N	MS	Lys	Ala	Leu	Glu	Val	Ser	Glu	Asp	Vidmar et al., 2017
Melanoma-associated antigen D2	Q9UNF1		peptide-Glu122+Thr-peptide	N	MS	Pro	Ala	Thr	Glu	Thr	Lys	Lys	Val	Vidmar et al., 2017
Mesencephalic astrocyte-derived neurotrophic factor	P55145	22-182	peptide-Glu104+Lys-peptide	N	MS	Lys	Ile	Cys	Glu	Lys	Leu	Lys	Lys	Schilling & Overall, 2008
Mesencephalic astrocyte-derived neurotrophic factor	P55145		peptide-Glu91+Val-peptide	N	MS	Ile	Ile	Asn	Glu	Val	Ser	Lys	Pro	Vidmar et al., 2017
Mesencephalic astrocyte-derived neurotrophic factor	P55145		peptide-Glu166+Leu-peptide	N	MS	Lys	Ile	Asn	Glu	Leu	Met	Pro	Lys	Vidmar et al., 2017
Mesencephalic astrocyte-derived neurotrophic factor	P55145		peptide-Asp126+Leu-peptide	N	MS	Lys	Gln	Ile	Asp	Leu	Ser	Thr	Val	Vidmar et al., 2017
Mesencephalic astrocyte-derived neurotrophic factor	P55145		peptide-Glu156+Lys-peptide	N	MS	Gly	Cys	Ala	Glu	Lys	Ser	Asp	Tyr	Vidmar et al., 2017
Metallothionein-1H	P80294		peptide-Gly40+Cys-peptide	N	MS	Cys	Pro	Leu	Gly	Cys	Ala	Lys	Cys	Vidmar et al., 2017
Metallothionein-2	P02795		peptide-Gly40+Cys-peptide	N	MS	Cys	Pro	Val	Gly	Cys	Ala	Lys	Cys	Vidmar et al., 2017
Metastasis-associated protein MTA2	O94776		peptide-Glu411+Gly-peptide	N	MS	Thr	Gln	Leu	Glu	Gly	Ala	Thr	Arg	Vidmar et al., 2017
Methionine adenosyltransferase 2 subunit beta	Q9NZL9		peptide-Glu301+Thr-peptide	N	MS	Ser	Lys	Leu	Glu	Thr	Leu	Gly	Ile	Vidmar et al., 2017
Methionine adenosyltransferase 2 subunit beta	Q9NZL9		peptide-Asp267+Ala-peptide	N	MS	Ala	Ile	Ala	Asp	Ala	Phe	Asn	Leu	Vidmar et al., 2017
Methionine aminopeptidase 2	P50579		peptide-Glu459+His-peptide	N	MS	Ala	Gln	Phe	Glu	His	Thr	Ile	Leu	Vidmar et al., 2017
Methionine aminopeptidase 2	P50579		peptide-Glu6+Val-peptide	N	MS	Gly	Val	Glu	Glu	Val	Ala	Ala	Ser	Vidmar et al., 2017
Methionine--tRNA ligase, cytoplasmic	P56192		peptide-Glu848+Val-peptide	N	MS	Leu	Met	Asp	Glu	Val	Thr	Lys	Gln	Vidmar et al., 2017
Methionine-R-sulfoxide reductase B2, mitochondrial	Q9Y3D2		peptide-Ala20+Val-peptide	N	MS	Pro	Arg	Arg	Ala	Val	Arg	Gly	Gln	Vidmar et al., 2017
methionyl-tRNA synthetase, cytoplasmic	P56192	242-264	peptide-Glu245+Ser-peptide	N	MS	-	Gly	Leu	Glu	Ser	Leu	Pro	Pro	Schilling & Overall, 2008
methionyl-tRNA synthetase, cytoplasmic	P56192	823-851	peptide-Glu832+Thr-peptide	N	MS	Ala	Val	Val	Glu	Thr	Val	Thr	Thr	Schilling & Overall, 2008
methylmalonyl-CoA mutase, mitochondrial precursor	P22033	33-750	peptide-Glu744+Lys-peptide	N	MS	Lys	Cys	Leu	Glu	Lys	Lys	Gln	Gln	Schilling & Overall, 2008
Methylosome subunit pICln	P54105		peptide-Glu155+Ala-peptide	N	MS	Tyr	Asp	Val	Glu	Ala	His	Glu	Gln	Vidmar et al., 2017
Methylosome subunit pICln	P54105		peptide-Glu24+Ala-peptide	N	MS	Pro	Asp	Thr	Glu	Ala	Val	Leu	Asn	Vidmar et al., 2017
Methylosome subunit pICln	P54105		peptide-Glu219+Val-peptide	N	MS	Asp	Gly	Met	Glu	Val	Asp	Thr	Thr	Vidmar et al., 2017
Methylosome subunit pICln	P54105		peptide-Glu14+Gly-peptide	N	MS	Gly	Pro	Ala	Glu	Gly	Leu	Leu	Arg	Vidmar et al., 2017
microtubule-associated protein	Q86Y04	371-396	peptide-Glu377+Glu-peptide	N	MS	Ala	Arg	Pro	Glu	Glu	Gly	Arg	Pro	Schilling & Overall, 2008
microtubule-associated protein	Q86Y04	1-857	peptide-Glu545+Gly-peptide	N	MS	Ile	Lys	Thr	Glu	Gly	Lys	Pro	Ala	Schilling & Overall, 2008
Microtubule-associated protein 1A	P78559		peptide-Glu935+Arg-peptide	N	MS	Leu	Ser	Gly	Glu	Arg	Ala	Val	Glu	Vidmar et al., 2017
microtubule-associated protein 1B	P46821	2094-2136	peptide-Glu2118+Ser-peptide	N	MS	Pro	Thr	Glu	Glu	Ser	Glu	Lys	Pro	Schilling & Overall, 2008
microtubule-associated protein 1B	P46821	1-2468	peptide-Glu1809+Lys-peptide	N	MS	Ala	Val	Lys	Glu	Lys	Thr	Ala	Thr	Schilling & Overall, 2008
Microtubule-associated protein 1B	P46821		peptide-Glu2026+Thr-peptide	N	MS	Tyr	Ser	Tyr	Glu	Thr	Ser	Thr	Lys	Vidmar et al., 2017
Microtubule-associated protein 1B	P46821		peptide-Glu1351+Val-peptide	N	MS	Leu	Pro	Thr	Glu	Val	Ile	Glu	Lys	Vidmar et al., 2017
Microtubule-associated protein 1B	P46821		peptide-Glu764+Ser-peptide	N	MS	Lys	Lys	Glu	Glu	Ser	Val	Lys	Lys	Vidmar et al., 2017
Microtubule-associated protein 1B	P46821		peptide-Glu622+Lys-peptide	N	MS	Glu	Val	Ala	Glu	Lys	Gln	Ala	Thr	Vidmar et al., 2017
Microtubule-associated protein 1B	P46821		peptide-Glu960+His-peptide	N	MS	Asp	Gly	Glu	Glu	His	Val	Cys	Val	Vidmar et al., 2017
Microtubule-associated protein 1B	P46821		peptide-Glu1523+Gly-peptide	N	MS	Ser	Ile	Ser	Glu	Gly	Thr	Val	Ser	Vidmar et al., 2017
Microtubule-associated protein 1B	P46821		peptide-Glu1961+Lys-peptide	N	MS	Asp	Ile	Ser	Glu	Lys	Thr	Thr	Ser	Vidmar et al., 2017
Microtubule-associated protein 1B	P46821		peptide-Glu567+Val-peptide	N	MS	Glu	Thr	Pro	Glu	Val	Thr	Lys	Val	Vidmar et al., 2017
Microtubule-associated protein 1B	P46821		peptide-Glu748+Ala-peptide	N	MS	Pro	Leu	Ser	Glu	Ala	Lys	Lys	Pro	Vidmar et al., 2017
Microtubule-associated protein 1B	P46821		peptide-Glu2223+Ala-peptide	N	MS	Val	Asp	Pro	Glu	Ala	Leu	Ala	Ile	Vidmar et al., 2017
Microtubule-associated protein 1B	P46821		peptide-Glu2297+Lys-peptide	N	MS	Glu	Ser	Val	Glu	Lys	Ala	Ala	Lys	Vidmar et al., 2017
Microtubule-associated protein 1B	P46821		peptide-Glu859+Leu-peptide	N	MS	Pro	Gln	Leu	Glu	Leu	Ile	Glu	Asp	Vidmar et al., 2017
Microtubule-associated protein 1B	P46821		peptide-Glu847+Val-peptide	N	MS	Lys	Ala	Glu	Glu	Val	Asp	Val	Thr	Vidmar et al., 2017
Microtubule-associated protein 1B	P46821		peptide-Glu1536+Gly-peptide	N	MS	Pro	Val	Asp	Glu	Gly	Val	Ala	Glu	Vidmar et al., 2017
Microtubule-associated protein 1B	P46821		peptide-Glu659+Val-peptide	N	MS	Pro	Lys	Lys	Glu	Val	Ala	Lys	Lys	Vidmar et al., 2017
Microtubule-associated protein 1B	P46821		peptide-Glu1727+Ala-peptide	N	MS	Ser	Gln	Val	Glu	Ala	Ser	Pro	Ser	Vidmar et al., 2017
Microtubule-associated protein 1B	P46821		peptide-Glu1447+Met-peptide	N	MS	Pro	Val	Ser	Glu	Met	Thr	Ser	Thr	Vidmar et al., 2017
Microtubule-associated protein 1B	P46821		peptide-Glu699+Val-peptide	N	MS	Pro	Lys	Lys	Glu	Val	Lys	Lys	Glu	Vidmar et al., 2017
Microtubule-associated protein 1B	P46821		peptide-Glu2279+Ser-peptide	N	MS	Gly	Leu	Lys	Glu	Ser	Ser	Asp	Lys	Vidmar et al., 2017
Microtubule-associated protein 4	P27816		peptide-Glu1115+Ala-peptide	N	MS	Ala	Ala	Pro	Glu	Ala	Gly	Ala	Pro	Vidmar et al., 2017
Microtubule-associated protein 4	P27816		peptide-Glu353+Thr-peptide	N	MS	Leu	Leu	Lys	Glu	Thr	Glu	Arg	Ala	Vidmar et al., 2017
Microtubule-associated protein 4	P27816		peptide-Glu1065+Lys-peptide	N	MS	Asn	Phe	Lys	Glu	Lys	Ala	Gln	Ala	Vidmar et al., 2017
Microtubule-associated protein 4	P27816		peptide-Ala759+Ser-peptide	N	MS	Pro	Ala	Val	Ala	Ser	Ala	Arg	Pro	Vidmar et al., 2017
Microtubule-associated protein 4	P27816		peptide-Glu626+Thr-peptide	N	MS	Ile	Ser	Pro	Glu	Thr	Val	Thr	Gly	Vidmar et al., 2017
Microtubule-associated protein 4	P27816		peptide-Glu471+Val-peptide	N	MS	Leu	Glu	Ala	Glu	Val	Ala	Pro	Val	Vidmar et al., 2017
Microtubule-associated protein 4	P27816		peptide-Glu646+Lys-peptide	N	MS	Ser	Val	Leu	Glu	Lys	Leu	Gly	Glu	Vidmar et al., 2017
Microtubule-associated protein 4	P27816		peptide-Glu20+Ile-peptide	N	MS	Ile	Glu	Gly	Glu	Ile	Lys	Arg	Asp	Vidmar et al., 2017
Microtubule-associated protein 4	P27816		peptide-Glu943+Asn-peptide	N	MS	Gly	Ser	Thr	Glu	Asn	Ile	Lys	His	Vidmar et al., 2017
Microtubule-associated protein 4	P27816		peptide-Glu271+Val-peptide	N	MS	Thr	Lys	Thr	Glu	Val	Ala	Leu	Ala	Vidmar et al., 2017
Microtubule-associated protein 4	P27816		peptide-Glu583+Ala-peptide	N	MS	Ser	Glu	Thr	Glu	Ala	Thr	Pro	Val	Vidmar et al., 2017
Microtubule-associated protein 4	P27816		peptide-Glu443+Val-peptide	N	MS	Ser	Glu	Thr	Glu	Val	Ala	Leu	Ala	Vidmar et al., 2017
Microtubule-associated protein 4	P27816		peptide-Glu40+Thr-peptide	N	MS	Val	Val	Gly	Glu	Thr	Val	Gly	Lys	Vidmar et al., 2017
Microtubule-associated protein 4	P27816		peptide-Asp369+Met-peptide	N	MS	Pro	Ser	Lys	Asp	Met	Gly	Pro	Pro	Vidmar et al., 2017
Microtubule-associated protein 4	P27816		peptide-Glu18+Gly-peptide	N	MS	Pro	Asp	Ile	Glu	Gly	Glu	Ile	Lys	Vidmar et al., 2017
Microtubule-associated protein 4	P27816		peptide-Ala487+Pro-peptide	N	MS	Thr	Glu	Ile	Ala	Pro	Ala	Lys	Asp	Vidmar et al., 2017
Microtubule-associated protein 4	P27816		peptide-Glu225+Ile-peptide	N	MS	Leu	Ala	Lys	Glu	Ile	Glu	Met	Ala	Vidmar et al., 2017
Microtubule-associated protein 4	P27816		peptide-Glu555+Ala-peptide	N	MS	Leu	Lys	Thr	Glu	Ala	Pro	Leu	Ala	Vidmar et al., 2017
Microtubule-associated protein 4	P27816		peptide-Glu511+Thr-peptide	N	MS	Pro	Leu	Ser	Glu	Thr	Glu	Met	Ala	Vidmar et al., 2017
Microtubule-associated protein 4	P27816		peptide-Glu207+Ala-peptide	N	MS	Val	Ser	Pro	Glu	Ala	Val	Ala	Glu	Vidmar et al., 2017
Microtubule-associated protein 4	P27816		peptide-Glu313+Val-peptide	N	MS	Thr	Glu	Lys	Glu	Val	Ala	Leu	Val	Vidmar et al., 2017
Microtubule-associated protein 4	P27816		peptide-Asp305+Met-peptide	N	MS	Leu	Val	Lys	Asp	Met	Glu	Leu	Pro	Vidmar et al., 2017
Microtubule-associated protein 4	P27816		peptide-Glu527+Val-peptide	N	MS	Pro	Glu	Thr	Glu	Val	Val	Leu	Ile	Vidmar et al., 2017
Microtubule-associated protein 4	P27816		peptide-Glu257+Met-peptide	N	MS	Lys	Glu	Thr	Glu	Met	Ala	Leu	Ala	Vidmar et al., 2017
Microtubule-associated protein 4	P27816		peptide-Glu581+Thr-peptide	N	MS	Pro	Leu	Ser	Glu	Thr	Glu	Ala	Thr	Vidmar et al., 2017
Microtubule-associated protein 4	P27816		peptide-Glu499+Val-peptide	N	MS	Thr	Val	Lys	Glu	Val	Gly	Leu	Leu	Vidmar et al., 2017
Microtubule-associated protein 4	P27816		peptide-Glu434+Lys-peptide	N	MS	Ser	Ser	Ala	Glu	Lys	Val	Ala	Leu	Vidmar et al., 2017
Microtubule-associated protein 4	P27816		peptide-Glu325+Thr-peptide	N	MS	Trp	Pro	Thr	Glu	Thr	Asp	Val	Ser	Vidmar et al., 2017
Microtubule-associated protein 4	P27816		peptide-Glu593+Ile-peptide	N	MS	Lys	Asp	Met	Glu	Ile	Ala	Gln	Thr	Vidmar et al., 2017
Microtubule-associated protein 4	P27816		peptide-Glu485+Ile-peptide	N	MS	Pro	Glu	Thr	Glu	Ile	Ala	Pro	Ala	Vidmar et al., 2017
Microtubule-associated protein 4	P27816		peptide-Glu541+Val-peptide	N	MS	Pro	Glu	Met	Glu	Val	Ala	Leu	Thr	Vidmar et al., 2017
Microtubule-associated protein 4	P27816		peptide-Glu513+Met-peptide	N	MS	Ser	Glu	Thr	Glu	Met	Ala	Leu	Gly	Vidmar et al., 2017
Microtubule-associated protein 4	P27816		peptide-Glu240+Ile-peptide	N	MS	Gln	Ala	Leu	Glu	Ile	Met	Met	Gly	Vidmar et al., 2017
Microtubule-associated protein 4	P27816		peptide-Glu297+Ser-peptide	N	MS	Pro	Ser	Met	Glu	Ser	Asp	Met	Ala	Vidmar et al., 2017
Microtubule-associated protein 4	P27816		peptide-Glu650+Arg-peptide	N	MS	Lys	Leu	Gly	Glu	Arg	Lys	Pro	Cys	Vidmar et al., 2017
microtubule-associated protein RP/EB family member 1	Q15691	182-204	peptide-Glu195+Leu-peptide	N	MS	Glu	Ala	Ala	Glu	Leu	Met	Gln	Gln	Schilling & Overall, 2008
microtubule-associated protein RP/EB family member 1	Q15691	130-150	QGQE+TAVAPSLVAPALNKPK	N	MS	Gln	Gly	Gln	Glu	Thr	Ala	Val	Ala	Schilling & Overall, 2008
Microtubule-associated protein RP/EB family member 1	Q15691		peptide-Glu213+Arg-peptide	N	MS	Leu	Glu	Lys	Glu	Arg	Asp	Phe	Tyr	Vidmar et al., 2017
Microtubule-associated protein RP/EB family member 2	Q15555		peptide-Glu264+Arg-peptide	N	MS	Val	Glu	Lys	Glu	Arg	Asp	Phe	Tyr	Vidmar et al., 2017
Microtubule-associated tumor suppressor candidate 2	Q5JR59		peptide-Glu1175+Leu-peptide	N	MS	Ser	Thr	His	Glu	Leu	Glu	Lys	Lys	Vidmar et al., 2017
Mimitin, mitochondrial	Q8N183		peptide-Glu21+His-peptide	N	MS	Glu	Val	Lys	Glu	His	Val	Gly	Thr	Vidmar et al., 2017
mimitin, mitochondrial precursor	Q8N183	114-130	ETSEE+LLPPPVQTQIK	N	MS	Thr	Ser	Glu	Glu	Leu	Leu	Pro	Pro	Schilling & Overall, 2008
mitochondrial carnitine/acylcarnitine carrier protein CACL	Q8N8R3	132-148	GSLDCL+AQIYGHEGLR	N	MS	Leu	Asp	Cys	Leu	Ala	Gln	Ile	Tyr	Schilling & Overall, 2008
Mitochondrial import inner membrane translocase subunit TIM44	O43615		peptide-Tyr51+Ser-peptide	N	MS	Ser	Lys	Ser	Tyr	Ser	Ser	Gly	Asn	Vidmar et al., 2017
Mitochondrial import receptor subunit TOM34	Q15785		peptide-Glu202+Leu-peptide	N	MS	Glu	Gly	Asn	Glu	Leu	Val	Lys	Lys	Vidmar et al., 2017
Mitochondrial intermembrane space import and assembly protein 40	Q8N4Q1		peptide-Glu96+Cys-peptide	N	MS	Ala	Met	Gln	Glu	Cys	Met	Gln	Lys	Vidmar et al., 2017
Mitochondrial intermembrane space import and assembly protein 40	Q8N4Q1		peptide-Glu126+Thr-peptide	N	MS	Gln	Ala	Glu	Glu	Thr	Ala	Pro	Ile	Vidmar et al., 2017
mitochondrial precursor proteins import receptor	O94826	1-608	peptide-Glu238+Lys-peptide	N	MS	Leu	Gly	Lys	Glu	Lys	Ala	Lys	Glu	Schilling & Overall, 2008
mitochondrial precursor proteins import receptor	O94826	1-608	peptide-Glu419+Ala-peptide	N	MS	Gln	Val	Glu	Glu	Ala	Val	Ala	Asp	Schilling & Overall, 2008
Mitochondrial proton/calcium exchanger protein	O95202		peptide-Glu121+Lys-peptide	N	MS	Ser	Val	Val	Glu	Lys	Ser	Leu	Lys	Vidmar et al., 2017
Mitochondrial proton/calcium exchanger protein	O95202		peptide-Glu568+Leu-peptide	N	MS	Glu	Lys	Glu	Glu	Leu	Glu	Leu	Leu	Vidmar et al., 2017
Mitochondrial proton/calcium exchanger protein	O95202		peptide-Glu589+Leu-peptide	N	MS	Ile	Lys	Lys	Glu	Leu	Ser	Lys	Thr	Vidmar et al., 2017
mitochondrial-processing peptidase subunit alpha, mitochondrial precursor	Q10713	34-525	peptide-Glu504+His-peptide	N	MS	Pro	Thr	Tyr	Glu	His	Ile	Gln	Thr	Schilling & Overall, 2008
Mitogen-activated protein kinase 1	P28482		peptide-Glu350+Thr-peptide	N	MS	Ile	Phe	Glu	Glu	Thr	Ala	Arg	Phe	Vidmar et al., 2017
MOB kinase activator 1A	Q9H8S9		peptide-Glu206+Leu-peptide	N	MS	Pro	Leu	Gln	Glu	Leu	Ile	Glu	Lys	Vidmar et al., 2017
moesin	P26038	2-577	peptide-Glu159+Gln-peptide	N	MS	Arg	Val	Leu	Glu	Gln	His	Lys	Leu	Schilling & Overall, 2008
Moesin	P26038		peptide-Glu462+Leu-peptide	N	MS	Thr	Arg	Ala	Glu	Leu	Lys	Thr	Ala	Vidmar et al., 2017
Moesin	P26038		peptide-Glu485+Asn-peptide	N	MS	Glu	Gln	Asp	Glu	Asn	Gly	Ala	Glu	Vidmar et al., 2017
Moesin	P26038		peptide-Glu489+Ala-peptide	N	MS	Asn	Gly	Ala	Glu	Ala	Ser	Ala	Asp	Vidmar et al., 2017
Moesin	P26038		peptide-Glu346+Leu-peptide	N	MS	Glu	Lys	Glu	Glu	Leu	Met	Glu	Arg	Vidmar et al., 2017
Moesin	P26038		peptide-Glu444+Trp-peptide	N	MS	Glu	Ala	Val	Glu	Trp	Gln	Gln	Lys	Vidmar et al., 2017
Moesin	P26038		peptide-Glu140+Val-peptide	N	MS	Phe	Asn	Lys	Glu	Val	His	Lys	Ser	Vidmar et al., 2017
Moesin	P26038		peptide-Glu364+Leu-peptide	N	MS	Ala	Gln	Gln	Glu	Leu	Glu	Glu	Gln	Vidmar et al., 2017
Moesin	P26038		peptide-Glu535+Ser-peptide	N	MS	Ala	Arg	Asp	Glu	Ser	Lys	Lys	Thr	Vidmar et al., 2017
Moesin	P26038		peptide-Glu423+Leu-peptide	N	MS	Glu	Met	Ala	Glu	Leu	Thr	Ala	Arg	Vidmar et al., 2017
Moesin	P26038		peptide-Glu516+Arg-peptide	N	MS	Glu	Lys	Asn	Glu	Arg	Val	Gln	Lys	Vidmar et al., 2017
Moesin	P26038		peptide-Glu336+Lys-peptide	N	MS	Ala	Glu	Lys	Glu	Lys	Glu	Lys	Ile	Vidmar et al., 2017
Moesin	P26038		peptide-Glu385+Ala-peptide	N	MS	Ala	Gln	Ser	Glu	Ala	Glu	Lys	Leu	Vidmar et al., 2017
Moesin	P26038		peptide-Glu401+Ala-peptide	N	MS	Glu	Ala	Lys	Glu	Ala	Leu	Leu	Gln	Vidmar et al., 2017
monocarboxylate transporter 1	P53985	462-479	EEE+TSIDVAGKPNEVTK	N	MS	-	Glu	Glu	Glu	Thr	Ser	Ile	Asp	Schilling & Overall, 2008
Monocarboxylate transporter 4	O15427		peptide-Glu427+Lys-peptide	N	MS	Ala	Glu	Glu	Glu	Lys	Leu	His	Lys	Vidmar et al., 2017
Multifunctional methyltransferase subunit TRM112-like protein	Q9UI30		peptide-Glu102+Ser-peptide	N	MS	Gln	Cys	Pro	Glu	Ser	Gly	Arg	Met	Vidmar et al., 2017
multifunctional protein ADE2	P22234	298-311	V+TSAHKGPDETLR	N	MS	-	-	-	Val	Thr	Ser	Ala	His	Schilling & Overall, 2008
Multifunctional protein ADE2	P22234		peptide-Glu5+Val-peptide	N	MS	Ala	Thr	Ala	Glu	Val	Leu	Asn	Ile	Vidmar et al., 2017
Multifunctional protein ADE2	P22234		peptide-Glu70+Ala-peptide	N	MS	Leu	Leu	Gln	Glu	Ala	Gly	Ile	Lys	Vidmar et al., 2017
Multifunctional protein ADE2	P22234		peptide-Glu23+Leu-peptide	N	MS	Glu	Val	Tyr	Glu	Leu	Leu	Asp	Ser	Vidmar et al., 2017
Multifunctional protein ADE2 isoform 2	P22234-2	305-318	V+TSAHKGPDETLR	N	MS	-	-	-	Val	Thr	Ser	Ala	His	Schilling & Overall, 2008
Myelin protein zero-like protein 1	O95297		peptide-Glu224+Gly-peptide	N	MS	Ser	Asp	Thr	Glu	Gly	Leu	Val	Lys	Vidmar et al., 2017
Myeloid-derived growth factor	Q969H8		peptide-Glu158+Leu-peptide	N	MS	Phe	Lys	Ala	Glu	Leu	Ser	Lys	Leu	Vidmar et al., 2017
myeloid/lymphoid or mixed-lineage leukemia/clathrin assembly protein fusion protein	Q8N6B4	1-599	peptide-Glu260+Arg-peptide	N	MS	Lys	Val	Asp	Glu	Arg	Glu	Lys	Gln	Schilling & Overall, 2008
Myoferlin	Q9NZM1		peptide-Glu1225+Phe-peptide	N	MS	Gly	Lys	Asp	Glu	Phe	Leu	Gly	Arg	Vidmar et al., 2017
Myosin light polypeptide 6	P60660		peptide-Glu14+Ala-peptide	N	MS	Glu	Phe	Lys	Glu	Ala	Phe	Gln	Leu	Vidmar et al., 2017
Myosin light polypeptide 6	P60660		peptide-Glu47+Val-peptide	N	MS	Thr	Asn	Ala	Glu	Val	Leu	Lys	Val	Vidmar et al., 2017
Myosin light polypeptide 6	P60660		peptide-Glu68+His-peptide	N	MS	Leu	Asp	Phe	Glu	His	Phe	Leu	Pro	Vidmar et al., 2017
Myosin light polypeptide 6	P60660		peptide-Glu108+Ile-peptide	N	MS	Met	Gly	Ala	Glu	Ile	Arg	His	Val	Vidmar et al., 2017
Myosin light polypeptide 6	P60660		peptide-Glu126+Met-peptide	N	MS	Glu	Glu	Val	Glu	Met	Leu	Val	Ala	Vidmar et al., 2017
Myosin light polypeptide 6	P60660		peptide-Glu91+Gly-peptide	N	MS	Asp	Tyr	Val	Glu	Gly	Leu	Arg	Val	Vidmar et al., 2017
Myosin light polypeptide 6	P60660		peptide-Glu59+Met-peptide	N	MS	Lys	Ser	Asp	Glu	Met	Asn	Val	Lys	Vidmar et al., 2017
Myosin regulatory light chain 12A	P19105		peptide-Glu140+Leu-peptide	N	MS	Glu	Val	Asp	Glu	Leu	Tyr	Arg	Glu	Vidmar et al., 2017
Myosin regulatory light chain 12A	P19105		peptide-Glu124+Leu-peptide	N	MS	Tyr	Leu	Arg	Glu	Leu	Leu	Thr	Thr	Vidmar et al., 2017
Myosin regulatory light chain 12A	P19105		peptide-Glu157+Phe-peptide	N	MS	Asn	Tyr	Ile	Glu	Phe	Thr	Arg	Ile	Vidmar et al., 2017
Myosin regulatory light polypeptide 9	P24844		peptide-Glu141+Met-peptide	N	MS	Glu	Val	Asp	Glu	Met	Tyr	Arg	Glu	Vidmar et al., 2017
myosin-9	P35579	2-1960	peptide-Asp1302+Phe-peptide	N	MS	Leu	Thr	Lys	Asp	Phe	Ser	Ala	Leu	Schilling & Overall, 2008
Myosin-9	P35579		peptide-Glu1593+Met-peptide	N	MS	Gln	Val	Arg	Glu	Met	Glu	Ala	Glu	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1281+Leu-peptide	N	MS	Leu	Gln	Val	Glu	Leu	Asp	Asn	Val	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu182+Asn-peptide	N	MS	Gly	Lys	Thr	Glu	Asn	Thr	Lys	Lys	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1453+Lys-peptide	N	MS	Leu	Ala	Glu	Glu	Lys	Thr	Ile	Ser	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1623+Ala-peptide	N	MS	Lys	Asp	Leu	Glu	Ala	His	Ile	Asp	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1854+Arg-peptide	N	MS	Val	Asp	Asp	Glu	Arg	Arg	Asn	Ala	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1073+Leu-peptide	N	MS	Gln	Ile	Ala	Glu	Leu	Lys	Met	Gln	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1570+Arg-peptide	N	MS	Ala	Gln	Phe	Glu	Arg	Asp	Leu	Gln	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1597+Leu-peptide	N	MS	Met	Glu	Ala	Glu	Leu	Glu	Asp	Glu	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1709+Ile-peptide	N	MS	Leu	Ala	Asp	Glu	Ile	Ala	Asn	Ser	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1356+Lys-peptide	N	MS	His	Asn	Leu	Glu	Lys	Gln	Ile	Ala	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu610+Leu-peptide	N	MS	Phe	Val	Ser	Glu	Leu	Trp	Lys	Asp	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1705+Leu-peptide	N	MS	Glu	Arg	Asp	Glu	Leu	Ala	Asp	Glu	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu921+Ala-peptide	N	MS	His	Asp	Leu	Glu	Ala	Arg	Val	Glu	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1599+Asp-peptide	N	MS	Ala	Glu	Leu	Glu	Asp	Glu	Arg	Lys	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1320+Asn-peptide	N	MS	Leu	Gln	Glu	Glu	Asn	Arg	Gln	Lys	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1452+Glu-peptide	N	MS	Leu	Leu	Ala	Glu	Glu	Lys	Thr	Ile	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1635+Ala-peptide	N	MS	Asn	Arg	Asp	Glu	Ala	Ile	Lys	Gln	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1728+Ala-peptide	N	MS	Arg	Arg	Leu	Glu	Ala	Arg	Ile	Ala	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1045+Leu-peptide	N	MS	Gln	Arg	Gln	Glu	Leu	Glu	Lys	Thr	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1232+Val-peptide	N	MS	Leu	Ala	Asn	Glu	Val	Lys	Val	Leu	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1672+Lys-peptide	N	MS	Lys	Glu	Asn	Glu	Lys	Lys	Leu	Lys	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1149+Asp-peptide	N	MS	Thr	Glu	Leu	Glu	Asp	Thr	Leu	Asp	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1421+Leu-peptide	N	MS	Leu	Gln	Gln	Glu	Leu	Asp	Asp	Leu	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1403+Lys-peptide	N	MS	Arg	His	Glu	Glu	Lys	Val	Ala	Ala	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1841+Lys-peptide	N	MS	Arg	Arg	Thr	Glu	Lys	Lys	Leu	Lys	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1475+Thr-peptide	N	MS	Arg	Glu	Lys	Glu	Thr	Lys	Ala	Leu	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1381+Thr-peptide	N	MS	Gly	Cys	Leu	Glu	Thr	Ala	Glu	Glu	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1095+Ala-peptide	N	MS	Val	Glu	Glu	Glu	Ala	Ala	Gln	Lys	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1026+Ala-peptide	N	MS	Asn	Lys	His	Glu	Ala	Met	Ile	Thr	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1189+Met-peptide	N	MS	Gln	Ile	Gln	Glu	Met	Arg	Gln	Lys	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1440+Lys-peptide	N	MS	Cys	Asn	Leu	Glu	Lys	Lys	Gln	Lys	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1702+Arg-peptide	N	MS	Ala	Gln	Gln	Glu	Arg	Asp	Glu	Leu	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu208+Arg-peptide	N	MS	Gly	Glu	Leu	Glu	Arg	Gln	Leu	Leu	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1789+Leu-peptide	N	MS	Gln	Asn	Lys	Glu	Leu	Lys	Val	Lys	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1168+Val-peptide	N	MS	Arg	Glu	Gln	Glu	Val	Asn	Ile	Leu	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1524+Lys-peptide	N	MS	His	Glu	Leu	Glu	Lys	Ser	Lys	Arg	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1522+Leu-peptide	N	MS	Ser	Val	His	Glu	Leu	Glu	Lys	Ser	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1798+Gly-peptide	N	MS	Gln	Glu	Met	Glu	Gly	Thr	Val	Lys	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1885+Ala-peptide	N	MS	Ala	Glu	Glu	Glu	Ala	Gln	Arg	Ala	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1385+Val-peptide	N	MS	Thr	Ala	Glu	Glu	Val	Lys	Arg	Lys	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu993+Lys-peptide	N	MS	Leu	Ala	Lys	Glu	Lys	Lys	Leu	Leu	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1536+Met-peptide	N	MS	Gln	Val	Glu	Glu	Met	Lys	Thr	Gln	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1084+Leu-peptide	N	MS	Lys	Glu	Glu	Glu	Leu	Gln	Ala	Ala	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu859+Lys-peptide	N	MS	Lys	Val	Arg	Glu	Lys	Gln	Leu	Ala	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu912+Leu-peptide	N	MS	Lys	Lys	Gln	Glu	Leu	Glu	Glu	Ile	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu970+Ala-peptide	N	MS	Val	Thr	Thr	Glu	Ala	Lys	Leu	Lys	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1601+Arg-peptide	N	MS	Leu	Glu	Asp	Glu	Arg	Lys	Gln	Arg	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1395+Gly-peptide	N	MS	Lys	Asp	Leu	Glu	Gly	Leu	Ser	Gln	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1131+Lys-peptide	N	MS	Asn	Lys	Ala	Glu	Lys	Gln	Lys	Arg	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1559+Val-peptide	N	MS	Leu	Arg	Leu	Glu	Val	Asn	Leu	Gln	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1663+Ile-peptide	N	MS	Ser	Arg	Glu	Glu	Ile	Leu	Ala	Gln	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1337+Lys-peptide	N	MS	Val	Glu	Asp	Glu	Lys	Asn	Ser	Phe	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1582+Lys-peptide	N	MS	Gln	Ser	Glu	Glu	Lys	Lys	Lys	Gln	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu881+Lys-peptide	N	MS	Leu	Met	Ala	Glu	Lys	Leu	Gln	Leu	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1013+Lys-peptide	N	MS	Glu	Glu	Glu	Glu	Lys	Ser	Lys	Ser	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1826+Thr-peptide	N	MS	Leu	Asp	Asn	Glu	Thr	Lys	Glu	Arg	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1746+Leu-peptide	N	MS	Gly	Asn	Thr	Glu	Leu	Ile	Asn	Asp	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu901+Leu-peptide	N	MS	Glu	Ala	Glu	Glu	Leu	Arg	Ala	Arg	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu937+Lys-peptide	N	MS	Leu	Gln	Ala	Glu	Lys	Lys	Lys	Met	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1905+Thr-peptide	N	MS	Asp	Ala	Thr	Glu	Thr	Ala	Asp	Ala	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1270+Leu-peptide	N	MS	Val	Arg	Thr	Glu	Leu	Ala	Asp	Lys	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu984+Asp-peptide	N	MS	Ile	Ile	Leu	Glu	Asp	Gln	Asn	Cys	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1829+Arg-peptide	N	MS	Glu	Thr	Lys	Glu	Arg	Gln	Ala	Ala	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu929+Arg-peptide	N	MS	Glu	Glu	Glu	Glu	Arg	Cys	Gln	His	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1206+Gln-peptide	N	MS	Glu	Gln	Leu	Glu	Gln	Thr	Lys	Arg	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1216+Lys-peptide	N	MS	Ala	Asn	Leu	Glu	Lys	Ala	Lys	Gln	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1653+Leu-peptide	N	MS	Cys	Met	Arg	Glu	Leu	Asp	Asp	Thr	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1496+Arg-peptide	N	MS	Ala	Glu	Leu	Glu	Arg	Leu	Asn	Lys	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1494+Leu-peptide	N	MS	Gln	Lys	Ala	Glu	Leu	Glu	Arg	Leu	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu60+Asn-peptide	N	MS	Glu	Leu	Val	Glu	Asn	Gly	Lys	Lys	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1899+Leu-peptide	N	MS	Leu	Gln	Arg	Glu	Leu	Glu	Asp	Ala	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1505+Met-peptide	N	MS	Phe	Arg	Thr	Glu	Met	Glu	Asp	Leu	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1813+Ala-peptide	N	MS	Thr	Ala	Leu	Glu	Ala	Lys	Ile	Ala	Vidmar et al., 2017
myristoylated alanine-rich C-kinase substrate	P29966	193-256	peptide-Glu241+Ala-peptide	N	MS	Lys	Pro	Gln	Glu	Ala	Ala	Val	Ala	Schilling & Overall, 2008
myristoylated alanine-rich C-kinase substrate	P29966	193-256	peptide-Glu227+Gly-peptide	N	MS	Ala	Gly	Glu	Glu	Gly	Ala	Ala	Gly	Schilling & Overall, 2008
Myristoylated alanine-rich C-kinase substrate	P29966		peptide-Glu35+Asn-peptide	N	MS	Asn	Gly	Gln	Glu	Asn	Gly	His	Val	Vidmar et al., 2017
Myristoylated alanine-rich C-kinase substrate	P29966		peptide-Glu190+Gly-peptide	N	MS	Pro	Ala	Ala	Glu	Gly	Gly	Lys	Asp	Vidmar et al., 2017
Myristoylated alanine-rich C-kinase substrate	P29966		peptide-Glu254+Thr-peptide	N	MS	Ala	Ser	Asp	Glu	Thr	Lys	Ala	Ala	Vidmar et al., 2017
Myristoylated alanine-rich C-kinase substrate	P29966		peptide-Glu86+Lys-peptide	N	MS	Ser	Ala	Ala	Glu	Lys	Gly	Glu	Pro	Vidmar et al., 2017
Myristoylated alanine-rich C-kinase substrate	P29966		peptide-Glu97+Ala-peptide	N	MS	Ala	Ala	Pro	Glu	Ala	Gly	Ala	Ser	Vidmar et al., 2017
N(G),N(G)-dimethylarginine dimethylaminohydrolase 1	O94760		peptide-Glu86+Thr-peptide	N	MS	Val	Cys	Glu	Glu	Thr	Ala	Leu	Ile	Vidmar et al., 2017
N(G),N(G)-dimethylarginine dimethylaminohydrolase 1	O94760		peptide-Glu264+Leu-peptide	N	MS	Ser	Met	Ser	Glu	Leu	Glu	Lys	Val	Vidmar et al., 2017
N(G),N(G)-dimethylarginine dimethylaminohydrolase 1	O94760		peptide-Gly11+Arg-peptide	N	MS	Ala	Ala	Phe	Gly	Arg	Ala	Thr	His	Vidmar et al., 2017
N(G),N(G)-dimethylarginine dimethylaminohydrolase 1	O94760		peptide-Glu110+Lys-peptide	N	MS	Glu	Ala	Leu	Glu	Lys	Leu	Gln	Leu	Vidmar et al., 2017
N(G),N(G)-dimethylarginine dimethylaminohydrolase 1	O94760		peptide-Glu23+Ser-peptide	N	MS	Ala	Leu	Pro	Glu	Ser	Leu	Gly	Gln	Vidmar et al., 2017
N(G),N(G)-dimethylarginine dimethylaminohydrolase 2	O95865		peptide-Glu21+Ser-peptide	N	MS	Gly	Val	Pro	Glu	Ser	Leu	Ala	Ser	Vidmar et al., 2017
N-alpha-acetyltransferase 10	P41227		peptide-Glu220+Ser-peptide	N	MS	Glu	Thr	Thr	Glu	Ser	Thr	Asp	Val	Vidmar et al., 2017
N-alpha-acetyltransferase 10	P41227		peptide-Glu181+Ser-peptide	N	MS	Asn	Lys	Val	Glu	Ser	Lys	Gly	Asn	Vidmar et al., 2017
N-alpha-acetyltransferase 15, NatA auxiliary subunit	Q9BXJ9		peptide-Glu752+Thr-peptide	N	MS	Asn	Phe	Asn	Glu	Thr	Phe	Leu	Lys	Vidmar et al., 2017
N-alpha-acetyltransferase 15, NatA auxiliary subunit	Q9BXJ9		peptide-Glu807+Ala-peptide	N	MS	Glu	Val	Leu	Glu	Ala	Leu	Tyr	Asp	Vidmar et al., 2017
N-alpha-acetyltransferase 20	P61599		peptide-Glu161+Lys-peptide	N	MS	Arg	Asp	Thr	Glu	Lys	Lys	Ser	Ile	Vidmar et al., 2017
N-myc-interactor	Q13287		peptide-Glu32+Ile-peptide	N	MS	Leu	Ile	Asp	Glu	Ile	Thr	Lys	Lys	Vidmar et al., 2017
Na(+)/H(+) exchange regulatory cofactor NHE-RF1	O14745		peptide-Glu109+Leu-peptide	N	MS	Val	Arg	Glu	Glu	Leu	Leu	Arg	Ala	Vidmar et al., 2017
Na(+)/H(+) exchange regulatory cofactor NHE-RF2	Q15599		peptide-Glu211+Val-peptide	N	MS	Arg	His	Ala	Glu	Val	Val	Ala	Ser	Vidmar et al., 2017
NAD(P) transhydrogenase, mitochondrial	Q13423	44-1086	peptide-Glu92+Ser-peptide	N	MS	Val	Val	Val	Glu	Ser	Gly	Ala	Gly	Schilling & Overall, 2008
NADPH--cytochrome P450 reductase	P16435		peptide-Glu304+Leu-peptide	N	MS	Met	His	Leu	Glu	Leu	Asp	Ile	Ser	Vidmar et al., 2017
NAG22 protein	Q9NYG1	1-481	peptide-Glu425+Gln-peptide	N	MS	Ser	Arg	Leu	Glu	Gln	Tyr	Thr	Ser	Schilling & Overall, 2008
nascent polypeptide-associated complex subunit alpha	Q13765	1-215	peptide-Glu212+Leu-peptide	N	MS	Ala	Ile	Met	Glu	Leu	Thr	Met	-	Schilling & Overall, 2008
Nascent polypeptide-associated complex subunit alpha	Q13765		peptide-Glu182+Leu-peptide	N	MS	Lys	Asp	Ile	Glu	Leu	Val	Met	Ser	Vidmar et al., 2017
Nascent polypeptide-associated complex subunit alpha	Q13765		peptide-Glu141+Lys-peptide	N	MS	Ala	Ala	Ala	Glu	Lys	Phe	Lys	Val	Vidmar et al., 2017
Nascent polypeptide-associated complex subunit alpha	Q13765		peptide-Glu125+Ala-peptide	N	MS	Val	Phe	Gly	Glu	Ala	Lys	Ile	Glu	Vidmar et al., 2017
nascent polypeptide-associated complex subunit alpha-2	Q9H009	1-215	peptide-Glu212+Leu-peptide	N	MS	Ala	Ile	Met	Glu	Leu	Thr	Val	-	Schilling & Overall, 2008
NCL protein	Q9BQ02	399-420	peptide-Glu406+Ile-peptide	N	MS	Glu	Asp	Gly	Glu	Ile	Asp	Gly	Asn	Schilling & Overall, 2008
NCL protein	Q9BQ02	1-482	peptide-Glu301+Phe-peptide	N	MS	Ala	Phe	Ile	Glu	Phe	Ala	Ser	Phe	Schilling & Overall, 2008
NCL protein	Q9BQ02	1-482	peptide-Glu353+Asp-peptide	N	MS	Gly	Leu	Ser	Glu	Asp	Thr	Thr	Glu	Schilling & Overall, 2008
NCL protein	Q9BQ02	1-482	peptide-Glu357+Glu-peptide	N	MS	Asp	Thr	Thr	Glu	Glu	Thr	Leu	Lys	Schilling & Overall, 2008
NCL protein	Q9BQ02	1-482	peptide-Glu358+Thr-peptide	N	MS	Thr	Thr	Glu	Glu	Thr	Leu	Lys	Glu	Schilling & Overall, 2008
NEDD8 precursor	Q15843	1-76	peptide-Glu53+Lys-peptide	N	MS	Met	Asn	Asp	Glu	Lys	Thr	Ala	Ala	Schilling & Overall, 2008
NEDD8-conjugating enzyme Ubc12	P61081		peptide-Glu96+Thr-peptide	N	MS	Val	Lys	Cys	Glu	Thr	Met	Val	Tyr	Vidmar et al., 2017
NEDD8-conjugating enzyme Ubc12	P61081		peptide-Glu151+Val-peptide	N	MS	Glu	Ala	Ala	Glu	Val	Leu	Gln	Asn	Vidmar et al., 2017
nestin	P48681	1-1621	peptide-Glu73+Lys-peptide	N	MS	Arg	Trp	Arg	Glu	Lys	His	Ala	Ala	Schilling & Overall, 2008
Neural cell adhesion molecule L1	P32004		peptide-Glu348+Thr-peptide	N	MS	Gly	Pro	Gly	Glu	Thr	Ala	Arg	Leu	Vidmar et al., 2017
Neural cell adhesion molecule L1	P32004		peptide-Glu894+Val-peptide	N	MS	Tyr	His	Leu	Glu	Val	Gln	Ala	Phe	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Glu9+Leu-peptide	N	MS	Thr	Thr	Arg	Glu	Leu	Leu	Leu	Pro	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Glu5094+Phe-peptide	N	MS	Pro	Asp	Val	Glu	Phe	Asp	Ile	Lys	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Glu335+Val-peptide	N	MS	Ser	Ala	Pro	Glu	Val	Ser	Val	Gly	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Glu798+Gly-peptide	N	MS	Glu	Glu	Pro	Glu	Gly	Lys	Leu	Lys	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Glu5650+Ser-peptide	N	MS	Gly	His	Leu	Glu	Ser	Gly	Ser	Gly	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Glu5123+Leu-peptide	N	MS	Pro	Asp	Leu	Glu	Leu	Ser	Leu	Pro	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Glu5585+Gly-peptide	N	MS	Ser	Leu	Gly	Glu	Gly	His	Leu	Ser	Vidmar et al., 2017
Neuron-specific calcium-binding protein hippocalcin	P84074		peptide-Glu168+Phe-peptide	N	MS	Ser	Leu	Glu	Glu	Phe	Ile	Arg	Gly	Vidmar et al., 2017
Neutral alpha-glucosidase AB	Q14697		peptide-Glu179+His-peptide	N	MS	Leu	Glu	Phe	Glu	His	Gln	Arg	Ala	Vidmar et al., 2017
Neutral alpha-glucosidase AB	Q14697		peptide-Asp65+Ser-peptide	N	MS	Ala	Leu	Leu	Asp	Ser	Leu	Gln	Leu	Vidmar et al., 2017
Neutral alpha-glucosidase AB	Q14697		peptide-Glu261+His-peptide	N	MS	Gly	Ile	Pro	Glu	His	Ala	Asp	Asn	Vidmar et al., 2017
Neutral alpha-glucosidase AB	Q14697		peptide-Glu272+Gly-peptide	N	MS	Lys	Val	Thr	Glu	Gly	Gly	Glu	Pro	Vidmar et al., 2017
Neutral alpha-glucosidase AB	Q14697		peptide-Ala32+Val-peptide	N	MS	Ile	Thr	Leu	Ala	Val	Asp	Arg	Ser	Vidmar et al., 2017
Neutral alpha-glucosidase AB	Q14697		peptide-Glu912+Ser-peptide	N	MS	Gly	Ser	Pro	Glu	Ser	Arg	Leu	Ser	Vidmar et al., 2017
Neutral alpha-glucosidase AB	Q14697		peptide-Glu922+Thr-peptide	N	MS	His	Asp	Pro	Glu	Thr	Ser	Val	Leu	Vidmar et al., 2017
neutral amino acid transporter B	Q15758	1-541	peptide-Glu538+Ser-peptide	N	MS	Ser	Glu	Lys	Glu	Ser	Val	Met	-	Schilling & Overall, 2008
Neutral amino acid transporter B(0)	Q15758	1-349	peptide-Glu538+Ser-peptide	N	MS	Ser	Glu	Lys	Glu	Ser	Val	Met	-	Schilling & Overall, 2008
Neutral amino acid transporter B(0)	Q15758		peptide-Glu516+Gly-peptide	N	MS	Pro	Thr	Glu	Glu	Gly	Asn	Pro	Leu	Vidmar et al., 2017
Neutral amino acid transporter B(0)	Q15758		peptide-Glu497+Leu-peptide	N	MS	Thr	Glu	Pro	Glu	Leu	Ile	Gln	Val	Vidmar et al., 2017
Neutral cholesterol ester hydrolase 1	Q6PIU2		peptide-Glu346+His-peptide	N	MS	Leu	Thr	Cys	Glu	His	Asp	Val	Leu	Vidmar et al., 2017
Nexilin	Q0ZGT2		peptide-Glu91+Lys-peptide	N	MS	Ser	Lys	Val	Glu	Lys	Ala	Tyr	Val	Vidmar et al., 2017
NFU1 iron-sulfur cluster scaffold homolog, mitochondrial	Q9UMS0	1-254	peptide-Glu82+Thr-peptide	N	MS	Pro	Val	Leu	Glu	Thr	Arg	Thr	Met	Schilling & Overall, 2008
NFU1 iron-sulfur cluster scaffold homolog, mitochondrial isoform 3	Q9UMS0-3	1-230	peptide-Glu58+Thr-peptide	N	MS	Pro	Val	Leu	Glu	Thr	Arg	Thr	Met	Schilling & Overall, 2008
NHP2-like protein 1	P55769		peptide-Glu108+Gly-peptide	N	MS	Thr	Ile	Lys	Glu	Gly	Ser	Gln	Leu	Vidmar et al., 2017
NHP2-like protein 1	P55769		peptide-Glu41+Ala-peptide	N	MS	Gly	Ala	Asn	Glu	Ala	Thr	Lys	Thr	Vidmar et al., 2017
Nicotinamide phosphoribosyltransferase	P43490		peptide-Glu106+Lys-peptide	N	MS	Tyr	Ile	Leu	Glu	Lys	Tyr	Asp	Gly	Vidmar et al., 2017
Nicotinamide phosphoribosyltransferase	P43490		peptide-Glu89+His-peptide	N	MS	Val	Tyr	Lys	Glu	His	Phe	Gln	Asp	Vidmar et al., 2017
nicotinate-nucleotide pyrophosphorylase [carboxylating]	Q15274	1-297	peptide-Glu246+Ala-peptide	N	MS	Val	Ala	Val	Glu	Ala	Ser	Gly	Gly	Schilling & Overall, 2008
nidogen-1	P10493	29-1245	peptide-Glu33+Leu-peptide	N		Asn	Arg	Gln	Glu	Leu	Phe	Pro	Phe	Walker et al., 1998	26804
nidogen-1	P10493	29-1245	peptide-Glu62+Leu-peptide	N		Leu	Ile	Gly	Glu	Leu	Ser	Phe	Tyr	Walker et al., 1998	26805
nidogen-1	P10493	29-1245	peptide-Glu264+Ile-peptide	N		Trp	Val	Phe	Glu	Ile	Gly	Ser	Pro	Walker et al., 1998
nidogen-1	P10493	29-1245	peptide-Glu373+Thr-peptide	N		Glu	Val	Glu	Glu	Thr	Gly	Val	Val	Walker et al., 1998	26806
nidogen-1	P10493	29-1245	peptide-Glu953+Arg-peptide	N		Gly	Lys	Ile	Glu	Arg	Leu	Pro	Leu	Walker et al., 1998	26807
nidogen-1	P10493	29-1245	peptide-Glu1089+Thr-peptide	N		Pro	Lys	Ile	Glu	Thr	Ser	His	Met	Walker et al., 1998	26809
nidogen-1	P10493	29-1245	peptide-Asp1115+Ala-peptide	N		Leu	Thr	Phe	Asp	Ala	Phe	Ser	Ser	Walker et al., 1998
nidogen-1	P10493	29-1245	peptide-Glu1132+Cys-peptide	N		His	Arg	Ala	Glu	Cys	Leu	Asn	Pro	Walker et al., 1998	26810
nidogen-1	P10493	29-1245	peptide-Glu1181+Met-peptide	N		Ile	Ser	Lys	Glu	Met	Asp	Thr	Phe	Walker et al., 1998	26811
nidogen-1	P10493	29-1245	peptide-Glu1044+Val-peptide	N		Asp	Arg	Ile	Glu	Val	Ala	Lys	Met	Walker et al., 1998	26808
nifU-like protein HIRIP5	Q6VNZ8	1-254	peptide-Glu82+Thr-peptide	N	MS	Pro	Val	Leu	Glu	Thr	Arg	Thr	Met	Schilling & Overall, 2008
nitrogenase iron protein 1	P00459	1-290	peptide-Glu29+Met-peptide	N		Ala	Leu	Ala	Glu	Met	Gly	Lys	Lys	Hausinger et al., 1982
nitrogenase iron protein 1	P00459	1-290	peptide-Asp44+Ser-peptide	N		Pro	Lys	Ala	Asp	Ser	Thr	Arg	Leu	Hausinger et al., 1982
nitrogenase iron protein 1	P00459	1-290	peptide-Glu60+Met-peptide	N		Thr	Ile	Met	Glu	Met	Ala	Ala	Glu	Hausinger et al., 1982
nitrogenase iron protein 1	P00459	1-290	peptide-Glu74+Asp-peptide	N		Leu	Glu	Leu	Glu	Asp	Val	Leu	Lys	Hausinger et al., 1982
nitrogenase iron protein 1	P00459	1-290	peptide-Glu88+Ser-peptide	N		Lys	Cys	Val	Glu	Ser	Gly	Gly	Pro	Hausinger et al., 1982
nitrogenase iron protein 1	P00459	1-290	peptide-Glu111+Glu-peptide	N		Asn	Phe	Leu	Glu	Glu	Glu	Gly	Ala	Hausinger et al., 1982
nitrogenase iron protein 1	P00459	1-290	peptide-Glu195+Leu-peptide	N		Arg	Glu	Asp	Glu	Leu	Ile	Ile	Ala	Hausinger et al., 1982
nitrogenase iron protein 1	P00459	1-290	peptide-Glu222+Ile-peptide	N		Gln	Arg	Ala	Glu	Ile	Arg	Arg	Met	Hausinger et al., 1982
nitrogenase iron protein 1	P00459	1-290	peptide-Glu230+Tyr-peptide	N		Thr	Val	Ile	Glu	Tyr	Asp	Pro	Lys	Hausinger et al., 1982
nitrogenase iron protein 1	P00459	1-290	peptide-Glu240+Tyr-peptide	N		Gln	Ala	Asp	Glu	Tyr	Arg	Ala	Leu	Hausinger et al., 1982
nitrogenase iron protein 1	P00459	1-290	peptide-Asp250+Asn-peptide	N		Lys	Val	Val	Asp	Asn	Lys	Leu	Leu	Hausinger et al., 1982
nitrogenase iron protein 1	P00459	1-290	peptide-Glu264+Leu-peptide	N		Thr	Met	Asp	Glu	Leu	Glu	Glu	Leu	Hausinger et al., 1982
nitrogenase iron protein 1	P00459	1-290	peptide-Glu280+Ser-peptide	N		Val	Glu	Asp	Glu	Ser	Ile	Val	Gly	Hausinger et al., 1982
Non-histone chromosomal protein HMG-14	P05114		peptide-Glu69+Thr-peptide	N	MS	Ala	Asn	Gln	Glu	Thr	Lys	Glu	Asp	Vidmar et al., 2017
Non-histone chromosomal protein HMG-14	P05114		peptide-Glu10+Gly-peptide	N	MS	Ser	Ser	Ala	Glu	Gly	Ala	Ala	Lys	Vidmar et al., 2017
Non-histone chromosomal protein HMG-17	P05204		peptide-Glu50+Lys-peptide	N	MS	Lys	Lys	Gly	Glu	Lys	Val	Pro	Lys	Vidmar et al., 2017
non-POU domain-containing octamer-binding protein	Q15233	434-456	peptide-Glu442+Gly-peptide	N	MS	Ala	Thr	Met	Glu	Gly	Ile	Gly	Ala	Schilling & Overall, 2008
non-POU domain-containing octamer-binding protein	Q15233	325-336	MEE+LHNQEVQK	N	MS	-	Met	Glu	Glu	Leu	His	Asn	Gln	Schilling & Overall, 2008
Non-specific lipid-transfer protein	P22307		peptide-Glu447+Gly-peptide	N	MS	Leu	Glu	Glu	Glu	Gly	Glu	Gln	Phe	Vidmar et al., 2017
Non-specific lipid-transfer protein	P22307		peptide-Thr424+Ser-peptide	N	MS	Ala	Val	Pro	Thr	Ser	Ser	Ala	Ser	Vidmar et al., 2017
non-structural protein NSP4	O12674		peptide-Glu147+Phe-peptide	N		Met	Ser	Lys	Glu	Phe	Asn	Gln	Lys	O'Brien et al., 2000
non-structural protein NSP4	O12674		peptide-Glu160+Ser-peptide	N		Asp	Glu	Trp	Glu	Ser	Arg	Lys	Asn	O'Brien et al., 2000
non-structural protein NSP4	O12674		peptide-Glu158+Trp-peptide	N		Thr	Leu	Asp	Glu	Trp	Glu	Ser	Arg	O'Brien et al., 2000
non-structural protein NSP4	O12674		peptide-Asp143+Met-peptide	N		Asp	Val	Ile	Asp	Met	Ser	Lys	Glu	O'Brien et al., 2000
NSFL1 cofactor p47	Q9UNZ2		peptide-Glu357+Ala-peptide	N	MS	Thr	Leu	Lys	Glu	Ala	Asn	Leu	Leu	Vidmar et al., 2017
Nuclear autoantigenic sperm protein	P49321		peptide-Glu42+Ala-peptide	N	MS	Val	Asp	Ser	Glu	Ala	Lys	Lys	Leu	Vidmar et al., 2017
Nuclear autoantigenic sperm protein	P49321		peptide-Glu14+Leu-peptide	N	MS	Val	Ala	Ala	Glu	Leu	Val	Ser	Ala	Vidmar et al., 2017
Nuclear autoantigenic sperm protein	P49321		peptide-Glu516+Leu-peptide	N	MS	Gly	Asn	Leu	Glu	Leu	Ala	Trp	Asp	Vidmar et al., 2017
Nuclear autoantigenic sperm protein	P49321		peptide-Glu161+Asp-peptide	N	MS	Lys	Lys	Thr	Glu	Asp	Lys	Ser	Leu	Vidmar et al., 2017
Nuclear autoantigenic sperm protein	P49321		peptide-Glu768+Ser-peptide	N	MS	Asn	Gln	Ala	Glu	Ser	Arg	Ala	Ala	Vidmar et al., 2017
Nuclear autoantigenic sperm protein	P49321		peptide-Glu602+Ala-peptide	N	MS	Gln	Tyr	Asp	Glu	Ala	Val	Ala	Gln	Vidmar et al., 2017
Nuclear autoantigenic sperm protein	P49321		peptide-Glu208+Thr-peptide	N	MS	Trp	Leu	Thr	Glu	Thr	Ser	Glu	Glu	Vidmar et al., 2017
Nuclear autoantigenic sperm protein	P49321		peptide-Glu212+Ala-peptide	N	MS	Thr	Ser	Glu	Glu	Ala	Lys	Gly	Gly	Vidmar et al., 2017
Nuclear autoantigenic sperm protein	P49321		peptide-Glu667+Leu-peptide	N	MS	Asn	Val	Ala	Glu	Leu	Ala	Leu	Lys	Vidmar et al., 2017
Nuclear autoantigenic sperm protein	P49321		peptide-Glu226+Val-peptide	N	MS	Asn	Glu	Ala	Glu	Val	Thr	Ser	Gly	Vidmar et al., 2017
Nuclear autoantigenic sperm protein	P49321		peptide-Glu500+Asn-peptide	N	MS	Ser	Val	Leu	Glu	Asn	Lys	Ser	Leu	Vidmar et al., 2017
Nuclear autoantigenic sperm protein	P49321		peptide-Glu648+Ile-peptide	N	MS	Leu	Leu	Pro	Glu	Ile	Arg	Glu	Lys	Vidmar et al., 2017
Nuclear autoantigenic sperm protein	P49321		peptide-Glu412+Lys-peptide	N	MS	Gly	Leu	Glu	Glu	Lys	Val	Arg	Ala	Vidmar et al., 2017
Nuclear migration protein nudC	Q9Y266		peptide-Glu288+Lys-peptide	N	MS	Ser	Met	Val	Glu	Lys	Met	Met	Tyr	Vidmar et al., 2017
Nuclear migration protein nudC	Q9Y266		peptide-Glu83+Lys-peptide	N	MS	Glu	Arg	Arg	Glu	Lys	Ala	Glu	Arg	Vidmar et al., 2017
Nuclear migration protein nudC	Q9Y266		peptide-Glu52+Lys-peptide	N	MS	Gly	Met	Ala	Glu	Lys	Leu	Ile	Thr	Vidmar et al., 2017
Nuclear migration protein nudC	Q9Y266		peptide-Glu118+Ile-peptide	N	MS	Leu	Gln	Leu	Glu	Ile	Asp	Gln	Lys	Vidmar et al., 2017
Nuclear migration protein nudC	Q9Y266		peptide-Glu263+Ile-peptide	N	MS	Ser	Asp	Pro	Glu	Ile	Asn	Thr	Lys	Vidmar et al., 2017
Nuclear migration protein nudC	Q9Y266		peptide-Glu272+Asn-peptide	N	MS	Ile	Asn	Pro	Glu	Asn	Ser	Lys	Leu	Vidmar et al., 2017
Nuclear migration protein nudC	Q9Y266		peptide-Glu322+Met-peptide	N	MS	Gln	His	Pro	Glu	Met	Asp	Phe	Ser	Vidmar et al., 2017
nuclear mitotic apparatus protein	Q9UPG3	146-163	VEFATLQE+ALAHALTEK	N	MS	Thr	Leu	Gln	Glu	Ala	Leu	Ala	His	Schilling & Overall, 2008
nuclear mitotic apparatus protein 1 variant	Q59HB8	526-543	VEFATLQE+ALAHALTEK	N	MS	Thr	Leu	Gln	Glu	Ala	Leu	Ala	His	Schilling & Overall, 2008
nuclear mitotic apparatus protein 1 variant	Q59HB8	1-1585	peptide-Glu374+Lys-peptide	N	MS	Gln	Val	Gln	Glu	Lys	Glu	Val	Arg	Schilling & Overall, 2008
nuclear protein Hcc-1	P82979	37-80	peptide-Glu64+Thr-peptide	N	MS	Glu	Glu	Glu	Glu	Thr	Lys	Pro	Ile	Schilling & Overall, 2008
nuclear protein Hcc-1	P82979	2-210	peptide-Glu152+Arg-peptide	N	MS	Lys	Leu	Lys	Glu	Arg	Ala	Gln	Arg	Schilling & Overall, 2008
Nuclear receptor-binding protein	Q9UHY1		peptide-Glu5+Ser-peptide	N	MS	Ser	Glu	Gly	Glu	Ser	Gln	Thr	Val	Vidmar et al., 2017
Nuclear receptor-binding protein	Q9UHY1		peptide-Glu302+Phe-peptide	N	MS	Leu	Gln	Arg	Glu	Phe	Ile	Gln	Lys	Vidmar et al., 2017
Nuclear receptor-binding protein	Q9UHY1		peptide-Gly408+Leu-peptide	N	MS	Thr	Ala	Phe	Gly	Leu	Pro	Arg	Pro	Vidmar et al., 2017
nuclease sensitive element binding protein-1	Q7KZ24	208-232	peptide-Glu217+Gly-peptide	N	MS	Glu	Val	Met	Glu	Gly	Ala	Asp	Asn	Schilling & Overall, 2008
nuclease-sensitive element-binding protein 1	P67809	210-234	peptide-Glu219+Gly-peptide	N	MS	Glu	Val	Met	Glu	Gly	Ala	Asp	Asn	Schilling & Overall, 2008
Nuclease-sensitive element-binding protein 1	P67809		peptide-Glu82+Asp-peptide	N	MS	Asp	Thr	Lys	Glu	Asp	Val	Phe	Val	Vidmar et al., 2017
Nuclease-sensitive element-binding protein 1	P67809		peptide-Glu302+Thr-peptide	N	MS	Asp	Gly	Lys	Glu	Thr	Lys	Ala	Ala	Vidmar et al., 2017
Nucleobindin-2	P80303		peptide-Ala24+Val-peptide	N	MS	Ala	Leu	Glu	Ala	Val	Pro	Ile	Asp	Vidmar et al., 2017
nucleolar complex protein 3 homolog	Q8WTT2	78-101	peptide-Glu85+Ala-peptide	N	MS	Glu	Glu	Glu	Glu	Ala	Leu	Pro	Leu	Schilling & Overall, 2008
Nucleolar RNA helicase 2	Q9NR30-2	1-715	peptide-Glu203+Leu-peptide	N	MS	Pro	Thr	Arg	Glu	Leu	Ala	Asn	Gln	Schilling & Overall, 2008
Nucleolar transcription factor 1	P17480		peptide-Glu490+Ile-peptide	N	MS	Arg	Ala	Glu	Glu	Ile	Trp	Gln	Gln	Vidmar et al., 2017
Nucleolar transcription factor 1	P17480		peptide-Glu460+Ala-peptide	N	MS	Lys	Ala	Arg	Glu	Ala	Ala	Leu	Lys	Vidmar et al., 2017
Nucleolin	P19338		peptide-Glu484+Ser-peptide	N	MS	Trp	Ser	Gly	Glu	Ser	Lys	Thr	Leu	Vidmar et al., 2017
Nucleolin	P19338		peptide-Glu507+Lys-peptide	N	MS	Glu	Val	Phe	Glu	Lys	Ala	Thr	Phe	Vidmar et al., 2017
Nucleolin	P19338		peptide-Glu605+Thr-peptide	N	MS	Thr	Asp	Arg	Glu	Thr	Gly	Ser	Ser	Vidmar et al., 2017
Nucleolin	P19338		peptide-Glu628+Ala-peptide	N	MS	Ala	Ala	Lys	Glu	Ala	Met	Glu	Asp	Vidmar et al., 2017
Nucleolin	P19338		peptide-Glu556+Leu-peptide	N	MS	Ile	Arg	Leu	Glu	Leu	Gln	Gly	Pro	Vidmar et al., 2017
Nucleolin	P19338		peptide-Glu453+Ile-peptide	N	MS	Gln	Gly	Thr	Glu	Ile	Asp	Gly	Arg	Vidmar et al., 2017
Nucleolin	P19338		peptide-Glu389+Arg-peptide	N	MS	Ser	Lys	Lys	Glu	Arg	Asp	Ala	Arg	Vidmar et al., 2017
Nucleolin	P19338		peptide-Glu631+Asp-peptide	N	MS	Glu	Ala	Met	Glu	Asp	Gly	Glu	Ile	Vidmar et al., 2017
Nucleolin	P19338		peptide-Glu529+Phe-peptide	N	MS	Ala	Phe	Ile	Glu	Phe	Ala	Ser	Phe	Vidmar et al., 2017
Nucleolin	P19338		peptide-Glu590+Ser-peptide	N	MS	Thr	Leu	Lys	Glu	Ser	Phe	Asp	Gly	Vidmar et al., 2017
Nucleolin	P19338		peptide-Glu418+Ile-peptide	N	MS	Asp	Ala	Ala	Glu	Ile	Arg	Leu	Val	Vidmar et al., 2017
Nucleolin	P19338		peptide-Glu375+Ile-peptide	N	MS	Phe	Gly	Asn	Glu	Ile	Lys	Leu	Glu	Vidmar et al., 2017
Nucleolin	P19338		peptide-Glu322+Leu-peptide	N	MS	Ser	Ala	Pro	Glu	Leu	Lys	Thr	Gly	Vidmar et al., 2017
Nucleolin	P19338		peptide-Glu283+Met-peptide	N	MS	Arg	Lys	Lys	Glu	Met	Ala	Lys	Gln	Vidmar et al., 2017
Nucleolin	P19338		peptide-Glu538+Ala-peptide	N	MS	Asp	Ala	Lys	Glu	Ala	Leu	Asn	Ser	Vidmar et al., 2017
Nucleolin	P19338		peptide-Glu355+Ser-peptide	N	MS	Val	Asp	Phe	Glu	Ser	Ala	Glu	Asp	Vidmar et al., 2017
Nucleolin	P19338		peptide-Glu365+Leu-peptide	N	MS	Lys	Ala	Leu	Glu	Leu	Thr	Gly	Leu	Vidmar et al., 2017
Nucleophosmin	P06748		peptide-Glu232+Lys-peptide	N	MS	Lys	Lys	Gln	Glu	Lys	Thr	Pro	Lys	Vidmar et al., 2017
Nucleophosmin	P06748		peptide-Glu265+Ala-peptide	N	MS	Pro	Lys	Val	Glu	Ala	Lys	Phe	Ile	Vidmar et al., 2017
Nucleophosmin	P06748		peptide-Glu22+Leu-peptide	N	MS	Phe	Gly	Cys	Glu	Leu	Lys	Ala	Asp	Vidmar et al., 2017
Nucleophosmin	P06748		peptide-Asp28+Tyr-peptide	N	MS	Ala	Asp	Lys	Asp	Tyr	His	Phe	Lys	Vidmar et al., 2017
Nucleophosmin	P06748		peptide-Glu188+Lys-peptide	N	MS	Glu	Ala	Glu	Glu	Lys	Ala	Pro	Val	Vidmar et al., 2017
Nucleophosmin	P06748		peptide-Glu39+His-peptide	N	MS	Asp	Glu	Asn	Glu	His	Gln	Leu	Ser	Vidmar et al., 2017
Nucleophosmin	P06748		peptide-Glu256+Lys-peptide	N	MS	Ala	Ser	Ile	Glu	Lys	Gly	Gly	Ser	Vidmar et al., 2017
Nucleophosmin	P06748		peptide-Glu282+Ala-peptide	N	MS	Thr	Asp	Gln	Glu	Ala	Ile	Gln	Asp	Vidmar et al., 2017
nucleophosmin/B23.2	Q9BYG9	1-259	peptide-Glu93+Ile-peptide	N	MS	Gly	Gly	Phe	Glu	Ile	Thr	Pro	Pro	Schilling & Overall, 2008
nucleophosmin/B23.2	Q9BYG9	1-259	peptide-Glu56+Leu-peptide	N	MS	Ala	Lys	Asp	Glu	Leu	His	Ile	Val	Schilling & Overall, 2008
Nucleoplasmin-3	O75607		peptide-Glu164+Leu-peptide	N	MS	Glu	Glu	Val	Glu	Leu	Cys	Pro	Ile	Vidmar et al., 2017
nucleoprotein TPR	P12270	2-2349	peptide-Glu1577+Asn-peptide	N	MS	Leu	Thr	Lys	Glu	Asn	Glu	Glu	Leu	Schilling & Overall, 2008
Nucleoprotein TPR	P12270		peptide-Glu374+Leu-peptide	N	MS	Ser	Glu	Glu	Glu	Leu	Ala	Ala	Met	Vidmar et al., 2017
nucleoside diphosphate kinase	P0A763	2-143	peptide-Glu28+Ala-peptide	N	MS	Ala	Arg	Phe	Glu	Ala	Ala	Gly	Phe	Timmer et al., 2009
Nucleoside diphosphate kinase A	P15531		peptide-Glu29+Gln-peptide	N	MS	Lys	Arg	Phe	Glu	Gln	Lys	Gly	Phe	Vidmar et al., 2017
Nucleoside diphosphate kinase A	P15531		peptide-Glu5+Arg-peptide	N	MS	Ala	Asn	Cys	Glu	Arg	Thr	Phe	Ile	Vidmar et al., 2017
nucleosome assembly protein 1-like 1	P55209	1-391	peptide-Glu119+Ile-peptide	N	MS	Lys	Arg	Phe	Glu	Ile	Ile	Asn	Ala	Schilling & Overall, 2008
Nucleosome assembly protein 1-like 1	P55209		peptide-Glu227+Val-peptide	N	MS	Phe	Thr	Asn	Glu	Val	Leu	Thr	Lys	Vidmar et al., 2017
Nucleosome assembly protein 1-like 1	P55209		peptide-Glu54+Arg-peptide	N	MS	Ala	Leu	Gln	Glu	Arg	Leu	Asp	Gly	Vidmar et al., 2017
Nucleosome assembly protein 1-like 1	P55209		peptide-Glu131+Cys-peptide	N	MS	Thr	Glu	Glu	Glu	Cys	Glu	Trp	Lys	Vidmar et al., 2017
Nucleosome assembly protein 1-like 1	P55209		peptide-Glu30+Thr-peptide	N	MS	Thr	Gly	Glu	Glu	Thr	Lys	Leu	Lys	Vidmar et al., 2017
Nucleosome assembly protein 1-like 1	P55209		peptide-Glu187+His-peptide	N	MS	Met	Val	Gln	Glu	His	Asp	Glu	Pro	Vidmar et al., 2017
Nucleosome assembly protein 1-like 1	P55209		peptide-Glu103+Arg-peptide	N	MS	His	Asp	Leu	Glu	Arg	Lys	Tyr	Ala	Vidmar et al., 2017
Nucleosome assembly protein 1-like 1	P55209		peptide-Glu215+Phe-peptide	N	MS	Phe	Val	Leu	Glu	Phe	His	Phe	Glu	Vidmar et al., 2017
Nucleosome assembly protein 1-like 1	P55209		peptide-Glu148+Lys-peptide	N	MS	Glu	Leu	Lys	Glu	Lys	Ala	Lys	Ile	Vidmar et al., 2017
Nucleosome assembly protein 1-like 4	Q99733		peptide-Glu92+Arg-peptide	N	MS	His	Asp	Leu	Glu	Arg	Lys	Tyr	Ala	Vidmar et al., 2017
nucleotide-binding protein 2	Q9Y5Y2	234-261	peptide-Glu245+Phe-peptide	N	MS	Phe	Ile	Gln	Glu	Phe	Pro	Gly	Ser	Schilling & Overall, 2008
NudC domain-containing protein 2	Q8WVJ2		peptide-Glu125+Arg-peptide	N	MS	Leu	Thr	Leu	Glu	Arg	Phe	Gln	Lys	Vidmar et al., 2017
NudC domain-containing protein 2	Q8WVJ2		peptide-Glu140+Ile-peptide	N	MS	Ser	Gly	Ala	Glu	Ile	Ser	Gly	Asn	Vidmar et al., 2017
nuMA1 protein	Q7Z757	134-151	VEFATLQE+ALAHALTEK	N	MS	Thr	Leu	Gln	Glu	Ala	Leu	Ala	His	Schilling & Overall, 2008
O-acetyl-ADP-ribose deacetylase 1	Q9Y530		peptide-Glu36+Asp-peptide	N	MS	Cys	Ile	Ser	Glu	Asp	Cys	Arg	Met	Vidmar et al., 2017
O-acetyl-ADP-ribose deacetylase 1	Q9Y530		peptide-Glu57+Leu-peptide	N	MS	Gly	Val	Gln	Glu	Leu	Leu	Asn	Gln	Vidmar et al., 2017
Obg-like ATPase 1	Q9NTK5		peptide-Glu359+Asn-peptide	N	MS	Glu	Gly	Ser	Glu	Asn	Ala	Val	Lys	Vidmar et al., 2017
Obg-like ATPase 1	Q9NTK5		peptide-Glu168+Lys-peptide	N	MS	Asp	Lys	Leu	Glu	Lys	Val	Ala	Val	Vidmar et al., 2017
Obg-like ATPase 1	Q9NTK5		peptide-Glu378+Asp-peptide	N	MS	Tyr	Ile	Val	Glu	Asp	Gly	Asp	Ile	Vidmar et al., 2017
OCIA domain-containing protein 1	Q9NX40		peptide-Glu154+Met-peptide	N	MS	Asp	Asn	Ile	Glu	Met	Leu	Pro	His	Vidmar et al., 2017
OCIA domain-containing protein 1	Q9NX40		peptide-Glu233+Val-peptide	N	MS	Pro	Lys	Lys	Glu	Val	Lys	Val	Asn	Vidmar et al., 2017
olfactory receptor 56A3	Q8NH54	1-315	peptide-Glu235+Gly-peptide	N	MS	Leu	Lys	Ala	Glu	Gly	Ala	Val	Ala	Schilling & Overall, 2008
Oligoribonuclease, mitochondrial	Q9Y3B8		peptide-Glu123+Phe-peptide	N	MS	Ala	Glu	Tyr	Glu	Phe	Leu	Ser	Phe	Vidmar et al., 2017
Oligoribonuclease, mitochondrial	Q9Y3B8		peptide-Glu206+Leu-peptide	N	MS	Ser	Ile	Lys	Glu	Leu	Gln	Phe	Tyr	Vidmar et al., 2017
Oligoribonuclease, mitochondrial	Q9Y3B8		peptide-Glu49+Met-peptide	N	MS	Val	Asp	Leu	Glu	Met	Thr	Gly	Leu	Vidmar et al., 2017
Oligoribonuclease, mitochondrial	Q9Y3B8		peptide-Glu37+Ser-peptide	N	MS	Ala	Ala	Gly	Glu	Ser	Met	Ala	Gln	Vidmar et al., 2017
Oligoribonuclease, mitochondrial	Q9Y3B8		peptide-Glu99+His-peptide	N	MS	Trp	Cys	Lys	Glu	His	His	Gly	Lys	Vidmar et al., 2017
Oligoribonuclease, mitochondrial	Q9Y3B8		peptide-Glu174+Leu-peptide	N	MS	Thr	Val	Lys	Glu	Leu	Cys	Arg	Arg	Vidmar et al., 2017
Opioid growth factor receptor	Q9NZT2		peptide-Glu388+Leu-peptide	N	MS	Arg	Lys	Leu	Glu	Leu	Ser	Arg	Arg	Vidmar et al., 2017
Opioid growth factor receptor	Q9NZT2		peptide-Glu415+Gly-peptide	N	MS	Leu	Asn	Leu	Glu	Gly	Cys	Ala	Leu	Vidmar et al., 2017
ornithine aminotransferase, mitochondrial	P04181	274-292	WLAVDYE+NVRPDIVLLGK	N	MS	Val	Asp	Tyr	Glu	Asn	Val	Arg	Pro	Schilling & Overall, 2008
Ornithine aminotransferase, mitochondrial	P04181		peptide-Ala25+Thr-peptide	N	MS	Val	Ala	Ser	Ala	Thr	Ser	Val	Ala	Vidmar et al., 2017
Ornithine aminotransferase, mitochondrial	P04181		peptide-Glu430+Ile-peptide	N	MS	Glu	Ser	Ile	Glu	Ile	Ile	Asn	Lys	Vidmar et al., 2017
Ornithine aminotransferase, mitochondrial	P04181		peptide-Glu216+Arg-peptide	N	MS	Pro	Ala	Leu	Glu	Arg	Ala	Leu	Gln	Vidmar et al., 2017
osmotically-inducible protein Y	P0AFH8	29-201	peptide-Glu126+Gly-peptide	N	MS	Asp	Ala	Lys	Glu	Gly	Ser	Val	Lys	Timmer et al., 2009
osmotically-inducible protein Y	P0AFH8	29-201	peptide-Glu37+Ser-peptide	N	MS	Thr	Thr	Asn	Glu	Ser	Ala	Gly	Gln	Timmer et al., 2009
OTU domain-containing protein 6B	Q8N6M0		peptide-Glu92+Asn-peptide	N	MS	Leu	Val	Leu	Glu	Asn	Gln	Pro	Pro	Vidmar et al., 2017
outer membrane protein A	P0A910	22-346	peptide-Glu333+Val-peptide	N	MS	Val	Glu	Ile	Glu	Val	Lys	Gly	Ile	Timmer et al., 2009
outer membrane protein C	P06996	22-367	peptide-Glu210+Gly-peptide	N	MS	Tyr	Asp	Tyr	Glu	Gly	Phe	Gly	Ile	Timmer et al., 2009
ovomucoid precursor	P01005	25-210	peptide-Glu88+Thr-peptide	P		Glu	Cys	Lys	Glu	Thr	Val	Pro	Met	Kato et al., 1987
ovomucoid precursor	P01005	25-210	peptide-Glu154+Leu-peptide	P		Cys	Arg	Lys	Glu	Leu	Ala	Ala	Val	Kato et al., 1987
ovomucoid precursor	P01005	25-210	peptide-Glu39+Gly-peptide	P		Thr	Asp	Lys	Glu	Gly	Lys	Asp	Val	Kato et al., 1987
ovomucoid precursor	P01005	25-210	peptide-Glu73+Phe-peptide	P		Tyr	Ser	Ile	Glu	Phe	Gly	Thr	Asn	Kato et al., 1987
ovomucoid precursor	P01005	25-210	peptide-Glu81+His-peptide	P		Ile	Ser	Lys	Glu	His	Asp	Gly	Glu	Kato et al., 1987
Oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial	P36551		peptide-Glu444+Val-peptide	N	MS	Glu	Ile	Leu	Glu	Val	Leu	Arg	His	Vidmar et al., 2017
P37 AUF1	Q12771	98-115	FGE+VVDCTLKLDPITGR	N	MS	-	Phe	Gly	Glu	Val	Val	Asp	Cys	Schilling & Overall, 2008
P37 AUF1	Q12771	1-286	peptide-Glu174+Glu-peptide	N	MS	Asp	Thr	Pro	Glu	Glu	Lys	Ile	Arg	Schilling & Overall, 2008
P37 AUF1	Q12771	1-286	peptide-Glu126+Ser-peptide	N	MS	Leu	Phe	Lys	Glu	Ser	Glu	Ser	Val	Schilling & Overall, 2008
P67	Q13041	1-591	peptide-Glu560+Arg-peptide	N	MS	Ala	His	Gly	Glu	Arg	Ala	Glu	Leu	Schilling & Overall, 2008
PA2G4 protein	Q05D08	202-221	VAHSFNCTPIE+GMLSHQLK	N	MS	Thr	Pro	Ile	Glu	Gly	Met	Leu	Ser	Schilling & Overall, 2008
PA2G4 protein	Q05D08	1-406	peptide-Glu132+Gly-peptide	N	MS	Ile	Leu	Lys	Glu	Gly	Asp	Leu	Val	Schilling & Overall, 2008
PA2G4 protein	Q05D08	1-406	peptide-Glu228+Lys-peptide	N	MS	Ile	Asp	Gly	Glu	Lys	Thr	Ile	Ile	Schilling & Overall, 2008
PAK2	Q9Y6B5	1-540	peptide-Glu110+Gln-peptide	N	MS	Thr	Lys	Leu	Glu	Gln	Lys	Lys	Asn	Schilling & Overall, 2008
PDZ and LIM domain protein 1	O00151	2-329	peptide-Glu65+Ala-peptide	N	MS	Thr	His	Leu	Glu	Ala	Gln	Asn	Arg	Schilling & Overall, 2008
PDZ and LIM domain protein 1	O00151		peptide-Glu164+Ser-peptide	N	MS	Asn	Ala	Leu	Glu	Ser	Lys	Thr	Ala	Vidmar et al., 2017
PDZ and LIM domain protein 1	O00151		peptide-Glu85+His-peptide	N	MS	Ala	Arg	Ser	Glu	His	Lys	Val	Trp	Vidmar et al., 2017
PDZ and LIM domain protein 1	O00151		peptide-Glu205+Leu-peptide	N	MS	Glu	Lys	Gln	Glu	Leu	Asn	Glu	Pro	Vidmar et al., 2017
Peptidyl-prolyl cis-trans isomerase A	P62937		peptide-Glu43+Lys-peptide	N	MS	Ser	Thr	Gly	Glu	Lys	Gly	Phe	Gly	Vidmar et al., 2017
Peptidyl-prolyl cis-trans isomerase A	P62937		peptide-Gly47+Tyr-peptide	N	MS	Lys	Gly	Phe	Gly	Tyr	Lys	Gly	Ser	Vidmar et al., 2017
Peptidyl-prolyl cis-trans isomerase A	P62937		peptide-Glu140+Ala-peptide	N	MS	Asn	Ile	Val	Glu	Ala	Met	Glu	Arg	Vidmar et al., 2017
Peptidyl-prolyl cis-trans isomerase A	P62937		peptide-Glu86+Asn-peptide	N	MS	Phe	Glu	Asp	Glu	Asn	Phe	Ile	Leu	Vidmar et al., 2017
Peptidyl-prolyl cis-trans isomerase A	P62937		peptide-Gly146+Ser-peptide	N	MS	Glu	Arg	Phe	Gly	Ser	Arg	Asn	Gly	Vidmar et al., 2017
Peptidyl-prolyl cis-trans isomerase A	P62937		peptide-Glu23+Leu-peptide	N	MS	Val	Ser	Phe	Glu	Leu	Phe	Ala	Asp	Vidmar et al., 2017
Peptidyl-prolyl cis-trans isomerase A	P62937		peptide-Glu143+Arg-peptide	N	MS	Glu	Ala	Met	Glu	Arg	Phe	Gly	Ser	Vidmar et al., 2017
Peptidyl-prolyl cis-trans isomerase A	P62937		peptide-Glu120+Trp-peptide	N	MS	Ala	Lys	Thr	Glu	Trp	Leu	Asp	Gly	Vidmar et al., 2017
Peptidyl-prolyl cis-trans isomerase A	P62937		peptide-Asp9+Ile-peptide	N	MS	Val	Phe	Phe	Asp	Ile	Ala	Val	Asp	Vidmar et al., 2017
Peptidyl-prolyl cis-trans isomerase A	P62937		peptide-Glu34+Asn-peptide	N	MS	Lys	Thr	Ala	Glu	Asn	Phe	Arg	Ala	Vidmar et al., 2017
Peptidyl-prolyl cis-trans isomerase B	P23284		peptide-Glu183+Ser-peptide	N	MS	Arg	Lys	Val	Glu	Ser	Thr	Lys	Thr	Vidmar et al., 2017
Peptidyl-prolyl cis-trans isomerase B	P23284		peptide-Glu206+Val-peptide	N	MS	Gly	Lys	Ile	Glu	Val	Glu	Lys	Pro	Vidmar et al., 2017
peptidyl-prolyl cis-trans isomerase B precursor	P23284	99-109	D+FMIQGGDFTR	N	MS	-	-	-	Asp	Phe	Met	Ile	Gln	Schilling & Overall, 2008
peptidyl-prolyl cis-trans isomerase B precursor	P23284	117-129	SIYGE+RFPDENFK	N	MS	Ile	Tyr	Gly	Glu	Arg	Phe	Pro	Asp	Schilling & Overall, 2008
Peptidyl-prolyl cis-trans isomerase FKBP1A	P62942		peptide-Gly84+Ala-peptide	N	MS	Tyr	Ala	Tyr	Gly	Ala	Thr	Gly	His	Vidmar et al., 2017
Peptidyl-prolyl cis-trans isomerase FKBP1A	P62942		peptide-Glu32+Asp-peptide	N	MS	Gly	Met	Leu	Glu	Asp	Gly	Lys	Lys	Vidmar et al., 2017
Peptidyl-prolyl cis-trans isomerase FKBP3	Q00688		peptide-Glu13+Gln-peptide	N	MS	Trp	Thr	Val	Glu	Gln	Leu	Arg	Ser	Vidmar et al., 2017
Peptidyl-prolyl cis-trans isomerase FKBP3	Q00688		peptide-Ser183+Lys-peptide	N	MS	Leu	Thr	Met	Ser	Lys	Gly	Glu	Lys	Vidmar et al., 2017
Peptidyl-prolyl cis-trans isomerase FKBP4	Q02790	7-28	peptide-Glu10+Ser-peptide	N	MS	-	Ala	Thr	Glu	Ser	Gly	Ala	Gln	Schilling & Overall, 2008
Peptidyl-prolyl cis-trans isomerase FKBP4	Q02790	213-232	GE+HSIVYLKPSYAFGSVGK	N	MS	-	-	Gly	Glu	His	Ser	Ile	Val	Schilling & Overall, 2008
Peptidyl-prolyl cis-trans isomerase FKBP4	Q02790		peptide-Glu407+Lys-peptide	N	MS	Leu	Ala	Arg	Glu	Lys	Lys	Leu	Tyr	Vidmar et al., 2017
Peptidyl-prolyl cis-trans isomerase FKBP4	Q02790		peptide-Glu175+Gly-peptide	N	MS	Val	Ala	Leu	Glu	Gly	Tyr	Tyr	Lys	Vidmar et al., 2017
Peptidyl-prolyl cis-trans isomerase FKBP4	Q02790		peptide-Glu136+Phe-peptide	N	MS	Glu	Leu	Phe	Glu	Phe	Lys	Gly	Glu	Vidmar et al., 2017
Peptidyl-prolyl cis-trans isomerase FKBP8	Q14318		peptide-Glu65+Ala-peptide	N	MS	Pro	Ala	Glu	Glu	Ala	Glu	Gln	Pro	Vidmar et al., 2017
peptidyl-prolyl cis-trans isomerase NIMA-interacting 1	Q13526	142-161	TGE+MSGPVFTDSGIHIILR	N	MS	-	Thr	Gly	Glu	Met	Ser	Gly	Pro	Schilling & Overall, 2008
peptidyl-prolyl cis-trans isomerase NIMA-interacting 1	Q13526	1-163	peptide-Asp121+Leu-peptide	N	MS	Ala	Arg	Gly	Asp	Leu	Gly	Ala	Phe	Schilling & Overall, 2008
Peptidyl-prolyl cis-trans isomerase-like 1	Q9Y3C6		peptide-Glu146+Thr-peptide	N	MS	Gly	Met	Val	Glu	Thr	Asn	Ser	Gln	Vidmar et al., 2017
Peptidyl-prolyl cis-trans isomerase-like 3	Q9H2H8		peptide-Glu138+Lys-peptide	N	MS	Pro	Val	Asn	Glu	Lys	Thr	Tyr	Arg	Vidmar et al., 2017
Peptidyl-tRNA hydrolase ICT1, mitochondrial	Q14197		peptide-Glu160+Ala-peptide	N	MS	Met	Ile	Thr	Glu	Ala	Ser	Gln	Thr	Vidmar et al., 2017
Perilipin-3	O60664		peptide-Glu64+Lys-peptide	N	MS	Asp	Ala	Ala	Glu	Lys	Gly	Val	Arg	Vidmar et al., 2017
Perilipin-3	O60664		peptide-Glu134+Met-peptide	N	MS	Gly	Ala	Gln	Glu	Met	Val	Ser	Ser	Vidmar et al., 2017
Perilipin-3	O60664		peptide-Glu94+Tyr-peptide	N	MS	Ser	Ala	Ser	Glu	Tyr	Ala	His	Arg	Vidmar et al., 2017
Perilipin-3	O60664		peptide-Glu123+Leu-peptide	N	MS	Asp	Thr	Lys	Glu	Leu	Val	Ser	Ser	Vidmar et al., 2017
Perilipin-3	O60664		peptide-Glu105+Asn-peptide	N	MS	Lys	Leu	Glu	Glu	Asn	Leu	Pro	Ile	Vidmar et al., 2017
period circadian protein homolog 1	O15534	1-1290	peptide-Glu1016+Ala-peptide	N	MS	Pro	Ser	Ala	Glu	Ala	Ala	Glu	Pro	Schilling & Overall, 2008
Periodic tryptophan protein 2 homolog	Q15269		peptide-Gly231+Trp-peptide	N	MS	Pro	Pro	Ala	Gly	Trp	Lys	Ala	Asp	Vidmar et al., 2017
peroxiredoxin-1	Q06830	168-190	peptide-Glu171+Val-peptide	N	MS	-	His	Gly	Glu	Val	Cys	Pro	Ala	Schilling & Overall, 2008
peroxiredoxin-1	Q06830	1-199	peptide-Glu193+Tyr-peptide	N	MS	Lys	Ser	Lys	Glu	Tyr	Phe	Ser	Lys	Schilling & Overall, 2008
Peroxiredoxin-1	Q06830		peptide-Glu155+Thr-peptide	N	MS	Ser	Val	Asp	Glu	Thr	Leu	Arg	Leu	Vidmar et al., 2017
peroxiredoxin-2	P32119	157-191	peptide-Glu170+Val-peptide	N	MS	Glu	His	Gly	Glu	Val	Cys	Pro	Ala	Schilling & Overall, 2008
peroxiredoxin-2	P32119	2-198	peptide-Glu167+His-peptide	N	MS	Tyr	Thr	Asp	Glu	His	Gly	Glu	Val	Schilling & Overall, 2008
peroxiredoxin-2	P32119	2-198	peptide-Glu192+Tyr-peptide	N	MS	Asp	Ser	Lys	Glu	Tyr	Phe	Ser	Lys	Schilling & Overall, 2008
Peroxiredoxin-2	P32119		peptide-Glu93+Gly-peptide	N	MS	Pro	Arg	Lys	Glu	Gly	Gly	Leu	Gly	Vidmar et al., 2017
Peroxiredoxin-2	P32119		peptide-Glu154+Ala-peptide	N	MS	Ser	Val	Asp	Glu	Ala	Leu	Arg	Leu	Vidmar et al., 2017
Peroxiredoxin-4	Q13162		peptide-Glu227+Thr-peptide	N	MS	Ser	Val	Asp	Glu	Thr	Leu	Arg	Leu	Vidmar et al., 2017
Peroxiredoxin-4	Q13162		peptide-Gly37+Trp-peptide	N	MS	Ala	Val	Gln	Gly	Trp	Glu	Thr	Glu	Vidmar et al., 2017
Peroxiredoxin-4	Q13162		peptide-Glu39+Thr-peptide	N	MS	Gln	Gly	Trp	Glu	Thr	Glu	Glu	Arg	Vidmar et al., 2017
Peroxiredoxin-5, mitochondrial	P30044		peptide-Met53+Ala-peptide	N	MS	Ala	Ala	Ala	Met	Ala	Pro	Ile	Lys	Vidmar et al., 2017
Peroxiredoxin-5, mitochondrial	P30044		peptide-Glu144+Gly-peptide	N	MS	His	Lys	Ala	Glu	Gly	Lys	Val	Arg	Vidmar et al., 2017
peroxiredoxin-6	P30041	84-106	peptide-Glu96+Lys-peptide	N	MS	Glu	Pro	Thr	Glu	Lys	Leu	Pro	Phe	Schilling & Overall, 2008
Peroxiredoxin-6	P30041		peptide-Ser38+His-peptide	N	MS	Ile	Leu	Phe	Ser	His	Pro	Arg	Asp	Vidmar et al., 2017
Peroxiredoxin-6	P30041		peptide-Glu210+Leu-peptide	N	MS	Phe	Thr	Lys	Glu	Leu	Pro	Ser	Gly	Vidmar et al., 2017
Peroxisomal biogenesis factor 19	P40855		peptide-Glu110+Ala-peptide	N	MS	Lys	Leu	Ser	Glu	Ala	Ala	Gly	Arg	Vidmar et al., 2017
PEST proteolytic signal-containing nuclear protein	Q8WW12		peptide-Glu12+Lys-peptide	N	MS	Glu	Lys	Pro	Glu	Lys	Ser	Gln	Arg	Vidmar et al., 2017
PEST proteolytic signal-containing nuclear protein	Q8WW12		peptide-Glu163+Arg-peptide	N	MS	Lys	Leu	Trp	Glu	Arg	Asn	Ile	Lys	Vidmar et al., 2017
PEST proteolytic signal-containing nuclear protein	Q8WW12		peptide-Glu26+Ala-peptide	N	MS	Pro	Glu	Glu	Glu	Ala	Glu	Lys	Pro	Vidmar et al., 2017
phage shock protein E	P23857	20-104	peptide-Glu89+Asn-peptide	N	MS	Thr	His	Val	Glu	Asn	Ala	Gly	Gly	Timmer et al., 2009
phenol sulfotransferase 1A5*1A possible alternative splicing form	Q1ET66	1-16	ME+LIQDTSRPPLEYVK	N	MS	-	-	Met	Glu	Leu	Ile	Gln	Asp	Schilling & Overall, 2008
phenol sulfotransferase 1A5*4	Q1ET63	1-16	ME+LIQDTSRPPLEYVK	N	MS	-	-	Met	Glu	Leu	Ile	Gln	Asp	Schilling & Overall, 2008
phenol sulfotransferase 1A5*5	Q1ET62	1-16	ME+LIQDTSRPPLEYVK	N	MS	-	-	Met	Glu	Leu	Ile	Gln	Asp	Schilling & Overall, 2008
phenylalanyl-tRNA synthetase alpha chain	Q9Y285	13-42	peptide-Glu33+His-peptide	N	MS	Leu	Gly	Met	Glu	His	Gln	Ala	Val	Schilling & Overall, 2008
phenylalanyl-tRNA synthetase alpha chain	Q9Y285	2-508	peptide-Glu52+Ala-peptide	N	MS	Glu	Val	Ile	Glu	Ala	Glu	Leu	Arg	Schilling & Overall, 2008
phenylalanyl-tRNA synthetase beta chain	Q9NSD9	1-589	peptide-Glu573+Leu-peptide	N	MS	Thr	Lys	Phe	Glu	Leu	Thr	Met	Pro	Schilling & Overall, 2008
Phosphate carrier protein, mitochondrial	Q00325		peptide-Glu352+Ser-peptide	N	MS	Glu	Met	Pro	Glu	Ser	Leu	Lys	Lys	Vidmar et al., 2017
Phosphatidylethanolamine-binding protein 1	P30086		peptide-Glu126+Gln-peptide	N	MS	Leu	Val	Tyr	Glu	Gln	Asp	Arg	Pro	Vidmar et al., 2017
Phosphatidylethanolamine-binding protein 1	P30086		peptide-Glu159+Leu-peptide	N	MS	Lys	Lys	Tyr	Glu	Leu	Arg	Ala	Pro	Vidmar et al., 2017
Phosphatidylethanolamine-binding protein 1	P30086		peptide-Glu16+Val-peptide	N	MS	Ser	Leu	Gln	Glu	Val	Asp	Glu	Gln	Vidmar et al., 2017
phosphatidylinositol binding clathrin assembly protein	Q6GMQ6	1-610	peptide-Glu321+Arg-peptide	N	MS	Lys	Val	Asp	Glu	Arg	Glu	Lys	Gln	Schilling & Overall, 2008
Phosphatidylinositol transfer protein alpha isoform	Q00169		peptide-Glu6+Tyr-peptide	N	MS	Leu	Leu	Lys	Glu	Tyr	Arg	Val	Ile	Vidmar et al., 2017
Phosphatidylinositol transfer protein beta isoform	P48739		peptide-Glu255+Thr-peptide	N	MS	Lys	Glu	Leu	Glu	Thr	Met	Arg	Lys	Vidmar et al., 2017
Phosphatidylinositol transfer protein beta isoform	P48739		peptide-Glu6+Phe-peptide	N	MS	Leu	Ile	Lys	Glu	Phe	Arg	Val	Val	Vidmar et al., 2017
phosphoenolpyruvate-protein phosphotransferase ptsP	P37177	1-748	peptide-Glu237+Thr-peptide	N	MS	Ala	Gln	Lys	Glu	Thr	Ala	Ala	Ile	Timmer et al., 2009
phosphoglucomutase-2	Q96G03	2-612	peptide-Glu33+Ala-peptide	N	MS	Leu	Thr	Leu	Glu	Ala	Val	Lys	Arg	Schilling & Overall, 2008
Phosphoglucomutase-2	Q96G03		peptide-Glu597+His-peptide	N	MS	Ala	Ile	Glu	Glu	His	Phe	Phe	Gln	Vidmar et al., 2017
Phosphoglycerate kinase 1	P00558		peptide-Glu274+Lys-peptide	N	MS	Ser	Lys	Ala	Glu	Lys	Asn	Gly	Val	Vidmar et al., 2017
Phosphoglycerate kinase 1	P00558		peptide-Glu84+Leu-peptide	N	MS	Val	Ala	Val	Glu	Leu	Lys	Ser	Leu	Vidmar et al., 2017
Phosphoglycerate kinase 1	P00558		peptide-Glu386+Asp-peptide	N	MS	Trp	Asn	Thr	Glu	Asp	Lys	Val	Ser	Vidmar et al., 2017
Phosphoglycerate kinase 1	P00558		peptide-Glu326+Ala-peptide	N	MS	Lys	Tyr	Ala	Glu	Ala	Val	Thr	Arg	Vidmar et al., 2017
Phosphoglycerate kinase 1	P00558		peptide-Glu128+Glu-peptide	N	MS	His	Val	Glu	Glu	Glu	Gly	Lys	Gly	Vidmar et al., 2017
Phosphoglycerate kinase 1	P00558		peptide-Asp92+Val-peptide	N	MS	Leu	Gly	Lys	Asp	Val	Leu	Phe	Leu	Vidmar et al., 2017
Phosphoglycerate kinase 1	P00558		peptide-Glu346+Ala-peptide	N	MS	Phe	Glu	Trp	Glu	Ala	Phe	Ala	Arg	Vidmar et al., 2017
Phosphoglycerate kinase 1	P00558		peptide-Glu404+Gly-peptide	N	MS	Glu	Leu	Leu	Glu	Gly	Lys	Val	Leu	Vidmar et al., 2017
Phosphoglycerate kinase 1	P00558		peptide-Glu129+Gly-peptide	N	MS	Val	Glu	Glu	Glu	Gly	Lys	Gly	Lys	Vidmar et al., 2017
Phosphoglycerate kinase 1	P00558		peptide-Glu105+Lys-peptide	N	MS	Pro	Glu	Val	Glu	Lys	Ala	Cys	Ala	Vidmar et al., 2017
Phosphoglycerate kinase 1	P00558		peptide-Glu120+Asn-peptide	N	MS	Ile	Leu	Leu	Glu	Asn	Leu	Arg	Phe	Vidmar et al., 2017
phosphoglycerate kinase 1 (EC 2.7.2.3)	P00558	199-216	ALE+SPERPFLAILGGAK	N	MS	-	Ala	Leu	Glu	Ser	Pro	Glu	Arg	Schilling & Overall, 2008
phosphoglycerate kinase 1 (EC 2.7.2.3)	P00558	2-417	peptide-Glu193+Leu-peptide	N	MS	Met	Lys	Lys	Glu	Leu	Asn	Tyr	Phe	Schilling & Overall, 2008
phosphoglycerate kinase 1 (EC 2.7.2.3)	P00558	2-417	peptide-Glu233+Met-peptide	N	MS	Lys	Val	Asn	Glu	Met	Ile	Ile	Gly	Schilling & Overall, 2008
phosphoglycerate kinase 1 (EC 2.7.2.3)	P00558	2-417	peptide-Asp98+Cys-peptide	N	MS	Phe	Leu	Lys	Asp	Cys	Val	Gly	Pro	Schilling & Overall, 2008
phosphoglycerate kinase 1 (EC 2.7.2.3)	P00558	2-417	peptide-Glu344+Trp-peptide	N	MS	Gly	Val	Phe	Glu	Trp	Glu	Ala	Phe	Schilling & Overall, 2008
phosphoglycerate kinase 1 (EC 2.7.2.3)	P00558	2-417	peptide-Asp164+Ala-peptide	N	MS	Tyr	Val	Asn	Asp	Ala	Phe	Gly	Thr	Schilling & Overall, 2008
phosphoglycerate kinase 2	P07205	2-417	peptide-Asp98+Cys-peptide	N	MS	Phe	Leu	Lys	Asp	Cys	Val	Gly	Ala	Schilling & Overall, 2008
phosphoglycerate kinase 2	P07205	2-417	peptide-Asp164+Ala-peptide	N	MS	Tyr	Val	Asn	Asp	Ala	Phe	Gly	Thr	Schilling & Overall, 2008
phosphoglycerate mutase 1	P18669	2-254	peptide-Glu13+Ser-peptide	N	MS	Arg	His	Gly	Glu	Ser	Ala	Trp	Asn	Schilling & Overall, 2008
phosphoglycerate mutase 1	P18669	2-254	peptide-Glu154+Ser-peptide	N	MS	Pro	Ser	Cys	Glu	Ser	Leu	Lys	Asp	Schilling & Overall, 2008
phosphoglycerate mutase 1	P18669	2-254	peptide-Glu102+Thr-peptide	N	MS	Asn	Lys	Ala	Glu	Thr	Ala	Ala	Lys	Schilling & Overall, 2008
Phosphoglycerate mutase 1	P18669		peptide-Glu207+Leu-peptide	N	MS	Ala	Ile	Met	Glu	Leu	Asn	Leu	Pro	Vidmar et al., 2017
Phosphoglycerate mutase 1	P18669		peptide-Glu219+Leu-peptide	N	MS	Ile	Val	Tyr	Glu	Leu	Asp	Lys	Asn	Vidmar et al., 2017
Phosphoglycerate mutase 1	P18669		peptide-Glu89+Arg-peptide	N	MS	Arg	Leu	Asn	Glu	Arg	His	Tyr	Gly	Vidmar et al., 2017
Phosphoglycerate mutase 1	P18669		peptide-Glu19+Asn-peptide	N	MS	Trp	Asn	Leu	Glu	Asn	Arg	Phe	Ser	Vidmar et al., 2017
phosphoglycerate mutase 2	P15259	2-253	peptide-Glu102+Thr-peptide	N	MS	Asn	Lys	Ala	Glu	Thr	Ala	Ala	Lys	Schilling & Overall, 2008
phosphoribosyl pyrophosphate synthase-associated protein 2	O60256	309-330	peptide-Glu317+Val-peptide	N	MS	Ala	Ile	Asp	Glu	Val	Val	Val	Thr	Schilling & Overall, 2008
Phosphoribosylformylglycinamidine synthase	O15067		peptide-Glu955+Val-peptide	N	MS	Leu	Val	Leu	Glu	Val	Gln	Glu	Pro	Vidmar et al., 2017
Phosphoribosylformylglycinamidine synthase	O15067		peptide-Glu561+Ser-peptide	N	MS	Glu	Tyr	Gln	Glu	Ser	Asn	Ala	Leu	Vidmar et al., 2017
phosphoribosylformylglycinamidine synthase (EC 6.3.5.3)	O15067	2-1338	peptide-Glu120+Thr-peptide	N	MS	Asp	Arg	Val	Glu	Thr	Thr	Arg	Arg	Schilling & Overall, 2008
phosphoribosylformylglycinamidine synthase (EC 6.3.5.3)	O15067	2-1338	peptide-Glu528+Leu-peptide	N	MS	Val	Leu	Lys	Glu	Leu	Ser	Asp	Pro	Schilling & Overall, 2008
Phosphoserine aminotransferase	Q9Y617		peptide-Glu28+Leu-peptide	N	MS	Ile	Gln	Lys	Glu	Leu	Leu	Asp	Tyr	Vidmar et al., 2017
Phostensin	Q6NYC8		peptide-Glu161+Leu-peptide	N	MS	Gly	Ala	Gln	Glu	Leu	Ser	Leu	Arg	Vidmar et al., 2017
Phostensin	Q6NYC8		peptide-Glu31+Arg-peptide	N	MS	Ala	Glu	Arg	Glu	Arg	Leu	Ser	Gln	Vidmar et al., 2017
Phostensin	Q6NYC8		peptide-Glu111+Arg-peptide	N	MS	Leu	Leu	Ala	Glu	Arg	Lys	Pro	Gly	Vidmar et al., 2017
Phostensin	Q6NYC8		peptide-Glu142+Arg-peptide	N	MS	Ser	Arg	Glu	Glu	Arg	Leu	Ser	Pro	Vidmar et al., 2017
PIH1 domain-containing protein 1	Q9NWS0		peptide-Glu34+Leu-peptide	N	MS	Ala	Ser	Lys	Glu	Leu	Gln	Gln	Ala	Vidmar et al., 2017
PIM1 peptidase precursor	P36776	726-755	peptide-Glu740+Asn-peptide	N	MS	Val	Thr	Pro	Glu	Asn	Leu	Gln	Asp	Schilling & Overall, 2008
PIN1 protein	Q49AR7	13-32	TGE+MSGPVFTDSGIHIILR	N	MS	-	Thr	Gly	Glu	Met	Ser	Gly	Pro	Schilling & Overall, 2008
Pituitary tumor-transforming gene 1 protein-interacting protein	P53801		peptide-Arg138+Glu-peptide	N	MS	Lys	Ala	Met	Arg	Glu	Arg	Glu	Glu	Vidmar et al., 2017
Pituitary tumor-transforming gene 1 protein-interacting protein	P53801		peptide-Glu160+Ile-peptide	N	MS	Arg	His	Asp	Glu	Ile	Arg	Lys	Lys	Vidmar et al., 2017
Pituitary tumor-transforming gene 1 protein-interacting protein	P53801		peptide-Glu139+Arg-peptide	N	MS	Ala	Met	Arg	Glu	Arg	Glu	Glu	Arg	Vidmar et al., 2017
Plasma membrane calcium-transporting ATPase 1	P20020		peptide-Glu39+Leu-peptide	N	MS	Ala	Leu	Met	Glu	Leu	Arg	Ser	Thr	Vidmar et al., 2017
Plasminogen activator inhibitor 1 RNA-binding protein	Q8NC51		peptide-Glu332+Ala-peptide	N	MS	Lys	Ser	Glu	Glu	Ala	His	Ala	Glu	Vidmar et al., 2017
Plasminogen activator inhibitor 1 RNA-binding protein	Q8NC51		peptide-Glu73+Ser-peptide	N	MS	Leu	Arg	Lys	Glu	Ser	Gln	Lys	Asp	Vidmar et al., 2017
Plasminogen activator inhibitor 1 RNA-binding protein	Q8NC51		peptide-Glu279+Val-peptide	N	MS	Glu	Val	Glu	Glu	Val	Lys	Glu	Glu	Vidmar et al., 2017
Plasminogen activator inhibitor 1 RNA-binding protein	Q8NC51		peptide-Glu213+Asp-peptide	N	MS	Leu	Lys	His	Glu	Asp	Lys	Arg	Gly	Vidmar et al., 2017
Plasminogen activator inhibitor 1 RNA-binding protein	Q8NC51		peptide-Glu263+His-peptide	N	MS	Glu	Gly	Glu	Glu	His	His	Pro	Val	Vidmar et al., 2017
Plasminogen activator inhibitor 1 RNA-binding protein	Q8NC51		peptide-Glu192+Phe-peptide	N	MS	Gly	Lys	Arg	Glu	Phe	Asp	Arg	His	Vidmar et al., 2017
Plasminogen activator inhibitor 1 RNA-binding protein	Q8NC51		peptide-Glu104+Gly-peptide	N	MS	Leu	Lys	Lys	Glu	Gly	Ile	Arg	Arg	Vidmar et al., 2017
Plasminogen activator inhibitor 1 RNA-binding protein	Q8NC51		peptide-Glu129+Arg-peptide	N	MS	Arg	Arg	Pro	Glu	Arg	Arg	Pro	Pro	Vidmar et al., 2017
Plasminogen activator inhibitor 1 RNA-binding protein	Q8NC51		peptide-Glu120+Gly-peptide	N	MS	Leu	Gln	Gly	Glu	Gly	Lys	Ile	Ile	Vidmar et al., 2017
Plasminogen activator inhibitor 1 RNA-binding protein	Q8NC51		peptide-Glu292+Trp-peptide	N	MS	Thr	Leu	Asp	Glu	Trp	Lys	Ala	Ile	Vidmar et al., 2017
Plasminogen activator inhibitor 1 RNA-binding protein	Q8NC51		peptide-Glu40+Ala-peptide	N	MS	Lys	Lys	Lys	Glu	Ala	Gly	Gly	Gly	Vidmar et al., 2017
Plasminogen activator inhibitor 1 RNA-binding protein	Q8NC51		peptide-Glu336+Asp-peptide	N	MS	Ala	His	Ala	Glu	Asp	Ser	Val	Met	Vidmar et al., 2017
Plasminogen activator inhibitor 1 RNA-binding protein	Q8NC51		peptide-Glu305+Phe-peptide	N	MS	Ala	Lys	Val	Glu	Phe	Asn	Ile	Arg	Vidmar et al., 2017
plastin-1	Q14651	99-125	peptide-Thr110+Ile-peptide	N	MS	Gly	Thr	Ser	Thr	Ile	Ser	Ser	Glu	Schilling & Overall, 2008
plastin-2	P13796	97-132	peptide-Glu122+Lys-peptide	N	MS	Ser	Glu	Glu	Glu	Lys	Tyr	Ala	Phe	Schilling & Overall, 2008
plastin-2	P13796	184-217	peptide-Glu192+Asn-peptide	N	MS	Thr	Ile	Gln	Glu	Asn	Leu	Asn	Leu	Schilling & Overall, 2008
plastin-3	P13797	337-350	AE+SMLQQADKLGCR	N	MS	-	-	Ala	Glu	Ser	Met	Leu	Gln	Schilling & Overall, 2008
plastin-3	P13797	101-135	peptide-Glu122+Lys-peptide	N	MS	Ser	Glu	Glu	Glu	Lys	Tyr	Ala	Phe	Schilling & Overall, 2008
plastin-3	P13797	1-630	peptide-Glu381+Asn-peptide	N	MS	Thr	Lys	Pro	Glu	Asn	Gln	Asp	Ile	Schilling & Overall, 2008
plastin-3	P13797	1-630	peptide-Glu260+Leu-peptide	N	MS	Thr	Leu	Glu	Glu	Leu	Met	Lys	Leu	Schilling & Overall, 2008
Plastin-3	P13797		peptide-Glu55+Ile-peptide	N	MS	Lys	Val	Arg	Glu	Ile	Ile	Gln	Lys	Vidmar et al., 2017
Plastin-3	P13797		peptide-Glu111+Leu-peptide	N	MS	Gly	Thr	Ser	Glu	Leu	Ser	Ser	Glu	Vidmar et al., 2017
Plastin-3	P13797		peptide-Glu316+Gly-peptide	N	MS	Gly	Gln	Lys	Glu	Gly	Glu	Pro	Arg	Vidmar et al., 2017
Plastin-3	P13797		peptide-Glu83+Val-peptide	N	MS	Ile	Phe	Gln	Glu	Val	Lys	Ser	Ser	Vidmar et al., 2017
Plastin-3	P13797		peptide-Glu43+Ala-peptide	N	MS	Leu	Phe	Lys	Glu	Ala	Asn	Met	Pro	Vidmar et al., 2017
Plastin-3	P13797		peptide-Glu330+Thr-peptide	N	MS	Gly	Phe	Asn	Glu	Thr	Asp	Asp	Leu	Vidmar et al., 2017
Plastin-3	P13797		peptide-Glu19+Ala-peptide	N	MS	Glu	Leu	Lys	Glu	Ala	Phe	Ala	Lys	Vidmar et al., 2017
Platelet-activating factor acetylhydrolase IB subunit gamma	Q15102		peptide-Glu60+Leu-peptide	N	MS	Ile	Trp	Arg	Glu	Leu	Phe	Ser	Pro	Vidmar et al., 2017
Podocalyxin	O00592		peptide-Glu412+Ile-peptide	N	MS	Val	Val	Lys	Glu	Ile	Thr	Ile	His	Vidmar et al., 2017
Podocalyxin	O00592		peptide-Glu426+Arg-peptide	N	MS	Asp	Val	Tyr	Glu	Arg	Leu	Lys	Asp	Vidmar et al., 2017
Podocalyxin	O00592		peptide-Glu504+Asn-peptide	N	MS	Gln	Thr	Val	Glu	Asn	Gly	Tyr	His	Vidmar et al., 2017
Podocalyxin	O00592		peptide-Glu524+Lys-peptide	N	MS	Glu	Met	Gln	Glu	Lys	Lys	Val	Val	Vidmar et al., 2017
poly	Q9NX46	1-363	peptide-Glu93+Ala-peptide	N	MS	Leu	Ala	Lys	Glu	Ala	Phe	Asp	Glu	Schilling & Overall, 2008
poly [ADP-ribose] polymerase 1	P09874	452-467	VVSE+DFLQDVSASTK	N	MS	Val	Val	Ser	Glu	Asp	Phe	Leu	Gln	Schilling & Overall, 2008
poly [ADP-ribose] polymerase 1	P09874	2-1014	peptide-Glu190+Asp-peptide	N	MS	Leu	Ala	Thr	Glu	Asp	Lys	Glu	Ala	Schilling & Overall, 2008
poly [ADP-ribose] polymerase 1	P09874	2-1014	peptide-Glu193+Ala-peptide	N	MS	Glu	Asp	Lys	Glu	Ala	Leu	Lys	Lys	Schilling & Overall, 2008
poly [ADP-ribose] polymerase 1	P09874	2-1014	peptide-Glu795+Lys-peptide	N	MS	Val	Asn	Tyr	Glu	Lys	Leu	Lys	Thr	Schilling & Overall, 2008
poly [ADP-ribose] polymerase 1	P09874	2-1014	peptide-Glu715+Val-peptide	N	MS	Ile	Leu	Ser	Glu	Val	Gln	Gln	Ala	Schilling & Overall, 2008
Poly(ADP-ribose) glycohydrolase ARH3	Q9NX46		peptide-Glu348+Thr-peptide	N	MS	Gly	Tyr	Glu	Glu	Thr	Asp	Ile	Leu	Vidmar et al., 2017
Poly(ADP-ribose) glycohydrolase ARH3	Q9NX46		peptide-Glu251+Leu-peptide	N	MS	Lys	Ile	Gly	Glu	Leu	Leu	Asp	Gln	Vidmar et al., 2017
poly(rC)-binding protein 1	Q15365	268-297	peptide-Glu283+Leu-peptide	N	MS	Thr	Thr	His	Glu	Leu	Thr	Ile	Pro	Schilling & Overall, 2008
Poly(rC)-binding protein 1	Q15365		peptide-Glu7+Ser-peptide	N	MS	Gly	Val	Thr	Glu	Ser	Gly	Leu	Asn	Vidmar et al., 2017
Poly(rC)-binding protein 1	Q15365		peptide-Glu266+Val-peptide	N	MS	Ser	Ser	Pro	Glu	Val	Lys	Gly	Tyr	Vidmar et al., 2017
Poly(rC)-binding protein 1	Q15365		peptide-Glu24+Val-peptide	N	MS	His	Gly	Lys	Glu	Val	Gly	Ser	Ile	Vidmar et al., 2017
Poly(rC)-binding protein 2	Q15366	1-365	peptide-Glu312+Ile-peptide	N	MS	Lys	Ile	Asn	Glu	Ile	Arg	Gln	Met	Schilling & Overall, 2008
Poly(rC)-binding protein 2	Q15366	1-365	peptide-Glu269+Ser-peptide	N	MS	Ser	Gly	Ile	Glu	Ser	Ser	Ser	Pro	Schilling & Overall, 2008
polyadenylate-binding protein 1	P11940	607-620	VDE+AVAVLQAHQAK	N	MS	-	Val	Asp	Glu	Ala	Val	Ala	Val	Schilling & Overall, 2008
Polyadenylate-binding protein 1	P11940		peptide-Glu313+Phe-peptide	N	MS	Leu	Arg	Lys	Glu	Phe	Ser	Pro	Phe	Vidmar et al., 2017
Polyadenylate-binding protein 1	P11940		peptide-Glu281+Gln-peptide	N	MS	Arg	Lys	Phe	Glu	Gln	Met	Lys	Gln	Vidmar et al., 2017
Polyadenylate-binding protein 1	P11940		peptide-Glu352+Met-peptide	N	MS	Ala	Val	Thr	Glu	Met	Asn	Gly	Arg	Vidmar et al., 2017
Polyadenylate-binding protein 1	P11940		peptide-Glu255+Leu-peptide	N	MS	Asn	Gly	Lys	Glu	Leu	Asn	Gly	Lys	Vidmar et al., 2017
Polyadenylate-binding protein 1	P11940		peptide-Glu601+Ser-peptide	N	MS	Glu	Ser	Pro	Glu	Ser	Leu	Arg	Ser	Vidmar et al., 2017
Polyadenylate-binding protein 1	P11940		peptide-Glu239+Arg-peptide	N	MS	Val	Ser	Phe	Glu	Arg	His	Glu	Asp	Vidmar et al., 2017
polyadenylate-binding protein 3	Q9H361	601-615	VDE+AVAVLQAHQAK	N	MS	-	Val	Asp	Glu	Ala	Val	Ala	Val	Schilling & Overall, 2008
polyadenylate-binding protein 3	Q9H361	67-78	ALD+TMNFDVIK	N	MS	-	Ala	Leu	Asp	Thr	Met	Asn	Phe	Schilling & Overall, 2008
Polyadenylate-binding protein 4	Q13310		peptide-Glu618+Ala-peptide	N	MS	Lys	Val	Asp	Glu	Ala	Val	Ala	Val	Vidmar et al., 2017
Polyadenylate-binding protein-interacting protein 2	Q9BPZ3		peptide-Glu16+Asp-peptide	N	MS	Ile	Ile	Asn	Glu	Asp	Val	Ile	Ile	Vidmar et al., 2017
Polyadenylate-binding protein-interacting protein 2	Q9BPZ3		peptide-Glu63+Met-peptide	N	MS	Cys	Phe	Gln	Glu	Met	Leu	Glu	Glu	Vidmar et al., 2017
polypyrimidine tract-binding protein 1 isoform c variant	Q59H49	82-101	LPIDVTEGE+VISLGLPFGK	N	MS	Thr	Glu	Gly	Glu	Val	Ile	Ser	Leu	Schilling & Overall, 2008
polypyrimidine tract-binding protein 1 isoform c variant	Q59H49	1-329	peptide-Glu89+Gly-peptide	N	MS	Asp	Val	Thr	Glu	Gly	Glu	Val	Ile	Schilling & Overall, 2008
porphobilinogen deaminase	Q68Y91	51-68	HLE+GGCSVPVAVHTAMK	N	MS	-	His	Leu	Glu	Gly	Gly	Cys	Ser	Schilling & Overall, 2008
Pre-B-cell leukemia transcription factor-interacting protein 1	Q96AQ6		peptide-Glu251+Gln-peptide	N	MS	Gly	Leu	Arg	Glu	Gln	Leu	Gln	Ala	Vidmar et al., 2017
pre-mRNA-processing factor 19	Q9UMS4	1-504	peptide-Asp228+Leu-peptide	N	MS	Leu	Ala	Leu	Asp	Leu	Cys	Pro	Ser	Schilling & Overall, 2008
pre-mRNA-processing-splicing factor 8	Q6P2Q9	1866-1885	GMLDPLE+VHLLDFPNIVIK	N	MS	Asp	Pro	Leu	Glu	Val	His	Leu	Leu	Schilling & Overall, 2008
Pre-mRNA-splicing factor SPF27	O75934		peptide-Asp14+Ala-peptide	N	MS	Val	Val	Val	Asp	Ala	Leu	Pro	Tyr	Vidmar et al., 2017
prefoldin subunit 1	O60925	1-122	peptide-Glu74+Ala-peptide	N	MS	Gln	Ser	Lys	Glu	Ala	Ile	His	Ser	Schilling & Overall, 2008
Prefoldin subunit 1	O60925		peptide-Glu102+Arg-peptide	N	MS	Ser	Tyr	Leu	Glu	Arg	Ser	Val	Lys	Vidmar et al., 2017
Prefoldin subunit 1	O60925		peptide-Glu35+Gln-peptide	N	MS	Ile	Gln	Ile	Glu	Gln	Leu	Asn	Arg	Vidmar et al., 2017
Prefoldin subunit 1	O60925		peptide-Glu62+Gly-peptide	N	MS	Asn	Met	Tyr	Glu	Gly	Val	Gly	Arg	Vidmar et al., 2017
Prefoldin subunit 1	O60925		peptide-Glu82+Lys-peptide	N	MS	Gln	Leu	Leu	Glu	Lys	Gln	Lys	Ile	Vidmar et al., 2017
Prefoldin subunit 2	Q9UHV9		peptide-Glu137+Asn-peptide	N	MS	Ala	Ala	Lys	Glu	Asn	Ser	Glu	Gly	Vidmar et al., 2017
Prefoldin subunit 2	Q9UHV9		peptide-Glu24+Gln-peptide	N	MS	Val	Ser	Ala	Glu	Gln	Val	Ile	Ala	Vidmar et al., 2017
Prefoldin subunit 2	Q9UHV9		peptide-Glu53+His-peptide	N	MS	Glu	Leu	Asn	Glu	His	Ser	Leu	Val	Vidmar et al., 2017
Prefoldin subunit 2	Q9UHV9		peptide-Glu102+Thr-peptide	N	MS	Lys	Ile	Ile	Glu	Thr	Leu	Thr	Gln	Vidmar et al., 2017
Prefoldin subunit 3	P61758		peptide-Glu12+Met-peptide	N	MS	Gly	Lys	Gly	Glu	Met	Ala	Thr	Gly	Vidmar et al., 2017
Prefoldin subunit 3	P61758		peptide-Glu86+Ile-peptide	N	MS	Gln	Thr	Leu	Glu	Ile	Leu	Lys	Tyr	Vidmar et al., 2017
Prefoldin subunit 3	P61758		peptide-Glu44+Thr-peptide	N	MS	Pro	Gly	Asn	Glu	Thr	Ala	Asp	Thr	Vidmar et al., 2017
Prefoldin subunit 3	P61758		peptide-Glu27+Ala-peptide	N	MS	Gly	Ile	Pro	Glu	Ala	Val	Phe	Val	Vidmar et al., 2017
Prefoldin subunit 4	Q9NQP4		peptide-Glu18+Asp-peptide	N	MS	Val	Thr	Phe	Glu	Asp	Gln	Gln	Lys	Vidmar et al., 2017
Prefoldin subunit 5	Q99471		peptide-Glu133+Met-peptide	N	MS	Ala	Val	Met	Glu	Met	Met	Ser	Gln	Vidmar et al., 2017
Prefoldin subunit 5	Q99471		peptide-Glu61+Leu-peptide	N	MS	Glu	Gly	Lys	Glu	Leu	Leu	Val	Pro	Vidmar et al., 2017
Prefoldin subunit 5	Q99471		peptide-Glu16+Met-peptide	N	MS	Pro	Gln	Leu	Glu	Met	Leu	Lys	Asn	Vidmar et al., 2017
prefoldin subunit 6	O15212	45-58	E+LALLDGSNVVFK	N	MS	-	-	-	Glu	Leu	Ala	Leu	Leu	Schilling & Overall, 2008
prefoldin subunit 6	O15212	1-129	peptide-Glu68+Leu-peptide	N	MS	Val	Lys	Gln	Glu	Leu	Gly	Glu	Ala	Schilling & Overall, 2008
Prefoldin subunit 6	O15212		peptide-Glu14+Lys-peptide	N	MS	Gly	Glu	Val	Glu	Lys	Tyr	Gln	Gln	Vidmar et al., 2017
Prefoldin subunit 6	O15212		peptide-Glu114+Phe-peptide	N	MS	Leu	Gln	Gln	Glu	Phe	Gln	Arg	Ala	Vidmar et al., 2017
Presequence protease, mitochondrial	Q5JRX3		peptide-Glu527+Ala-peptide	N	MS	Gln	Lys	Val	Glu	Ala	Leu	Ser	Pro	Vidmar et al., 2017
PRKC apoptosis WT1 regulator protein	Q96IZ0		peptide-Glu327+Asn-peptide	N	MS	Leu	Lys	Gln	Glu	Asn	Lys	Thr	Leu	Vidmar et al., 2017
PRKC apoptosis WT1 regulator protein	Q96IZ0		peptide-Glu306+Ile-peptide	N	MS	Leu	Lys	Glu	Glu	Ile	Asp	Leu	Leu	Vidmar et al., 2017
probable ATP-dependent RNA helicase DDX47	Q9H0S4	1-455	peptide-Glu69+Thr-peptide	N	MS	Gly	Leu	Ala	Glu	Thr	Gly	Ser	Gly	Schilling & Overall, 2008
probable ATP-dependent RNA helicase DDX5	P17844	1-614	peptide-Glu98+Ala-peptide	N	MS	Asn	Phe	Tyr	Glu	Ala	Asn	Phe	Pro	Schilling & Overall, 2008
Probable E3 ubiquitin-protein ligase TRIML2	Q8N7C3		peptide-Phe105+Gln-peptide	N	MS	Glu	Glu	Met	Phe	Gln	Glu	Met	Leu	Vidmar et al., 2017
probable phosphoglycerate mutase 4	Q8N0Y7	1-254	peptide-Glu13+Ser-peptide	N	MS	Arg	His	Gly	Glu	Ser	Thr	Trp	Asn	Schilling & Overall, 2008
probable phosphoglycerate mutase 4	Q8N0Y7	1-254	peptide-Glu102+Thr-peptide	N	MS	Asn	Lys	Ala	Glu	Thr	Ala	Ala	Lys	Schilling & Overall, 2008
probable rRNA-processing protein EBP2	Q99848	1-306	peptide-Glu41+Gly-peptide	N	MS	Val	Val	Leu	Glu	Gly	Pro	Lys	Lys	Schilling & Overall, 2008
Procollagen galactosyltransferase 1	Q8NBJ5		peptide-Glu603+Ala-peptide	N	MS	Leu	Ser	Arg	Glu	Ala	Lys	Asn	Ser	Vidmar et al., 2017
profilin-1	P07737	2-140	peptide-Glu47+Val-peptide	N	MS	Thr	Pro	Ala	Glu	Val	Gly	Val	Leu	Schilling & Overall, 2008
Profilin-1	P07737		peptide-Glu83+Phe-peptide	N	MS	Gln	Asp	Gly	Glu	Phe	Ser	Met	Asp	Vidmar et al., 2017
Profilin-1	P07737		peptide-Glu130+Met-peptide	N	MS	Lys	Cys	Tyr	Glu	Met	Ala	Ser	His	Vidmar et al., 2017
Profilin-1	P07737		peptide-Glu117+Gly-peptide	N	MS	Met	Gly	Lys	Glu	Gly	Val	His	Gly	Vidmar et al., 2017
progesterone receptor	P06401	1-933	peptide-Glu231+Ser-peptide	N		Glu	Ser	Glu	Glu	Ser	Ala	Gly	Pro	Bain et al., 2000
progesterone receptor	P06401	1-933	peptide-Glu459+Cys-peptide	N		Ser	Thr	Leu	Glu	Cys	Ile	Leu	Tyr	Bain et al., 2000
progesterone receptor	P06401	1-933	peptide-Glu532+Gly-peptide	N		Val	Leu	Lys	Glu	Gly	Leu	Pro	Gln	Bain et al., 2000
progesterone receptor	P06401	1-933	peptide-Glu560+Ser-peptide	N		Tyr	Ser	Phe	Glu	Ser	Leu	Pro	Gln	Bain et al., 2000
programmed cell death 6-interacting protein	Q8WUM4	2-868	peptide-Glu426+Gln-peptide	N	MS	Ser	Val	Ile	Glu	Gln	Gly	Gly	Ile	Schilling & Overall, 2008
programmed cell death 6-interacting protein	Q8WUM4	2-868	peptide-Glu35+Gln-peptide	N	MS	Gly	Gly	Glu	Glu	Gln	Ala	Gln	Tyr	Schilling & Overall, 2008
Programmed cell death 6-interacting protein	Q8WUM4		peptide-Glu453+Ser-peptide	N	MS	Ile	Leu	Asp	Glu	Ser	Leu	Arg	Leu	Vidmar et al., 2017
programmed cell death protein 5	O14737	68-79	AVE+NYLIQMAR	N	MS	-	Ala	Val	Glu	Asn	Tyr	Leu	Ile	Schilling & Overall, 2008
programmed cell death protein 5	O14737	2-125	peptide-Glu65+Lys-peptide	N	MS	Val	Lys	Pro	Glu	Lys	Thr	Lys	Ala	Schilling & Overall, 2008
Programmed cell death protein 5	O14737		peptide-Glu16+Leu-peptide	N	MS	Arg	Leu	Ala	Glu	Leu	Gln	Ala	Lys	Vidmar et al., 2017
Programmed cell death protein 5	O14737		peptide-Glu94+Ile-peptide	N	MS	Gly	Leu	Ile	Glu	Ile	Leu	Lys	Lys	Vidmar et al., 2017
Proliferating cell nuclear antigen	P12004		peptide-Glu238+Tyr-peptide	N	MS	Leu	Val	Val	Glu	Tyr	Lys	Ile	Ala	Vidmar et al., 2017
Proliferating cell nuclear antigen	P12004		peptide-Glu132+Tyr-peptide	N	MS	Pro	Glu	Gln	Glu	Tyr	Ser	Cys	Val	Vidmar et al., 2017
Proliferating cell nuclear antigen	P12004		peptide-Glu174+Leu-peptide	N	MS	Ala	Ser	Gly	Glu	Leu	Gly	Asn	Gly	Vidmar et al., 2017
Proliferating cell nuclear antigen	P12004		peptide-Glu115+Met-peptide	N	MS	Ser	Asp	Tyr	Glu	Met	Lys	Leu	Met	Vidmar et al., 2017
proliferation-associated protein 2G4	Q9UQ80	172-191	VAHSFNCTPIE+GMLSHQLK	N	MS	Thr	Pro	Ile	Glu	Gly	Met	Leu	Ser	Schilling & Overall, 2008
proliferation-associated protein 2G4	Q9UQ80	2-394	peptide-Glu102+Gly-peptide	N	MS	Ile	Leu	Lys	Glu	Gly	Asp	Leu	Val	Schilling & Overall, 2008
proliferation-associated protein 2G4	Q9UQ80	2-394	peptide-Glu198+Lys-peptide	N	MS	Ile	Asp	Gly	Glu	Lys	Thr	Ile	Ile	Schilling & Overall, 2008
Proliferation-associated protein 2G4	Q9UQ80		peptide-Glu14+Asp-peptide	N	MS	Thr	Ile	Ala	Glu	Asp	Leu	Val	Val	Vidmar et al., 2017
Proliferation-associated protein 2G4	Q9UQ80		peptide-Glu59+Thr-peptide	N	MS	Ile	Met	Glu	Glu	Thr	Gly	Lys	Ile	Vidmar et al., 2017
Proliferation-associated protein 2G4	Q9UQ80		peptide-Glu151+Ala-peptide	N	MS	Leu	Cys	Ala	Glu	Ala	Ala	Leu	Arg	Vidmar et al., 2017
prostaglandin E synthase 3	Q15185	48-65	HLNE+IDLFHCIDPNDSK	N	MS	His	Leu	Asn	Glu	Ile	Asp	Leu	Phe	Schilling & Overall, 2008
Prostaglandin E synthase 3	Q15185		peptide-Glu32+Lys-peptide	N	MS	Val	Asn	Phe	Glu	Lys	Ser	Lys	Leu	Vidmar et al., 2017
Prostaglandin E synthase 3	Q15185		peptide-Glu18+Phe-peptide	N	MS	Val	Phe	Ile	Glu	Phe	Cys	Val	Glu	Vidmar et al., 2017
Prostaglandin E synthase 3	Q15185		peptide-Glu81+Ser-peptide	N	MS	Arg	Lys	Gly	Glu	Ser	Gly	Gln	Ser	Vidmar et al., 2017
Proteasomal ubiquitin receptor ADRM1	Q16186		peptide-Glu126+Tyr-peptide	N	MS	Lys	Val	Asn	Glu	Tyr	Leu	Asn	Asn	Vidmar et al., 2017
proteasome activator complex subunit 1	Q06323	1-249	peptide-Glu71+Lys-peptide	N	MS	Pro	Val	Lys	Glu	Lys	Glu	Lys	Glu	Schilling & Overall, 2008
Proteasome activator complex subunit 1	Q06323		peptide-Glu51+Ala-peptide	N	MS	Ala	Leu	Asn	Glu	Ala	Asn	Leu	Ser	Vidmar et al., 2017
Proteasome activator complex subunit 1	Q06323		peptide-Glu9+Ala-peptide	N	MS	Val	Gln	Pro	Glu	Ala	Gln	Ala	Lys	Vidmar et al., 2017
Proteasome activator complex subunit 1	Q06323		peptide-Glu26+Asn-peptide	N	MS	Thr	Lys	Thr	Glu	Asn	Leu	Leu	Gly	Vidmar et al., 2017
Proteasome activator complex subunit 1	Q06323		peptide-Glu39+Leu-peptide	N	MS	Lys	Ile	Ser	Glu	Leu	Asp	Ala	Phe	Vidmar et al., 2017
Proteasome activator complex subunit 2	Q9UL46		peptide-Glu215+Leu-peptide	N	MS	Phe	Tyr	Ala	Glu	Leu	Tyr	His	Ile	Vidmar et al., 2017
Proteasome activator complex subunit 2	Q9UL46		peptide-Glu148+Arg-peptide	N	MS	Lys	Val	Leu	Glu	Arg	Val	Asn	Ala	Vidmar et al., 2017
Proteasome activator complex subunit 2	Q9UL46		peptide-Glu18+Val-peptide	N	MS	Lys	Gln	Val	Glu	Val	Phe	Arg	Gln	Vidmar et al., 2017
Proteasome subunit alpha type-1	P25786		peptide-Glu234+Gly-peptide	N	MS	Pro	Phe	Leu	Glu	Gly	Leu	Glu	Glu	Vidmar et al., 2017
Proteasome subunit alpha type-2	P25787		peptide-Glu215+Ala-peptide	N	MS	Ile	Cys	Asn	Glu	Ala	Gly	Phe	Arg	Vidmar et al., 2017
Proteasome subunit alpha type-2	P25787		peptide-Glu185+Asp-peptide	N	MS	Leu	Glu	Leu	Glu	Asp	Ala	Ile	His	Vidmar et al., 2017
Proteasome subunit alpha type-3	P25788		peptide-Glu226+Ile-peptide	N	MS	Gly	Arg	His	Glu	Ile	Val	Pro	Lys	Vidmar et al., 2017
Proteasome subunit alpha type-3	P25788		peptide-Glu176+Ile-peptide	N	MS	Ala	Lys	Thr	Glu	Ile	Glu	Lys	Leu	Vidmar et al., 2017
Proteasome subunit alpha type-4	P25789		peptide-Glu232+Val-peptide	N	MS	Lys	Gln	Lys	Glu	Val	Glu	Gln	Leu	Vidmar et al., 2017
proteasome subunit alpha type-5	P28066	1-241	peptide-Glu208+Lys-peptide	N	MS	Val	Met	Glu	Glu	Lys	Leu	Asn	Ala	Schilling & Overall, 2008
Proteasome subunit alpha type-5	P28066		peptide-Glu193+Ala-peptide	N	MS	Thr	Leu	Lys	Glu	Ala	Ile	Lys	Ser	Vidmar et al., 2017
Proteasome subunit alpha type-5	P28066		peptide-Glu95+Thr-peptide	N	MS	Ala	Arg	Val	Glu	Thr	Gln	Asn	His	Vidmar et al., 2017
Proteasome subunit alpha type-5	P28066		peptide-Glu216+Leu-peptide	N	MS	Thr	Asn	Ile	Glu	Leu	Ala	Thr	Val	Vidmar et al., 2017
Proteasome subunit alpha type-5	P28066		peptide-Glu207+Glu-peptide	N	MS	Gln	Val	Met	Glu	Glu	Lys	Leu	Asn	Vidmar et al., 2017
Proteasome subunit alpha type-5	P28066		peptide-Glu69+Ile-peptide	N	MS	Lys	Ile	Val	Glu	Ile	Asp	Ala	His	Vidmar et al., 2017
Proteasome subunit alpha type-6	P60900		peptide-Glu216+Val-peptide	N	MS	Ser	Glu	Ile	Glu	Val	Gly	Val	Val	Vidmar et al., 2017
Proteasome subunit alpha type-6	P60900		peptide-Glu234+Ile-peptide	N	MS	Thr	Glu	Ala	Glu	Ile	Asp	Ala	His	Vidmar et al., 2017
Proteasome subunit alpha type-6	P60900		peptide-Glu74+Asn-peptide	N	MS	Lys	Ile	Thr	Glu	Asn	Ile	Gly	Cys	Vidmar et al., 2017
Proteasome subunit alpha type-7	O14818		peptide-Glu207+Leu-peptide	N	MS	Lys	Asn	Ile	Glu	Leu	Ala	Val	Met	Vidmar et al., 2017
Proteasome subunit alpha type-7	O14818		peptide-Glu170+Phe-peptide	N	MS	Ser	Val	Arg	Glu	Phe	Leu	Glu	Lys	Vidmar et al., 2017
Proteasome subunit beta type-4	P28070		peptide-Glu200+Lys-peptide	N	MS	Glu	Val	Leu	Glu	Lys	Gln	Pro	Val	Vidmar et al., 2017
Proteasome subunit beta type-4	P28070		peptide-Arg45+Thr-peptide	N	MS	Pro	Ile	Thr	Arg	Thr	Gln	Asn	Pro	Vidmar et al., 2017
Proteasome subunit beta type-4	P28070		peptide-Glu251+Thr-peptide	N	MS	Leu	Ser	Thr	Glu	Thr	Asn	Trp	Asp	Vidmar et al., 2017
Proteasome subunit beta type-5	P28074		peptide-Glu207+Val-peptide	N	MS	Tyr	Asp	Leu	Glu	Val	Glu	Gln	Ala	Vidmar et al., 2017
Proteasome subunit beta type-7	Q99436		peptide-Glu182+Asp-peptide	N	MS	Ala	Val	Phe	Glu	Asp	Lys	Phe	Arg	Vidmar et al., 2017
Proteasome subunit beta type-7	Q99436		peptide-Gly43+Thr-peptide	N	MS	Arg	Lys	Thr	Gly	Thr	Thr	Ile	Ala	Vidmar et al., 2017
Protein arginine N-methyltransferase 1	Q99873		peptide-Glu351+Leu-peptide	N	MS	Gln	Leu	Cys	Glu	Leu	Ser	Cys	Ser	Vidmar et al., 2017
Protein canopy homolog 2	Q9Y2B0		peptide-Ala20+Arg-peptide	N	MS	Thr	Ala	Trp	Ala	Arg	Arg	Ser	Gln	Vidmar et al., 2017
Protein canopy homolog 3	Q9BT09		peptide-Glu262+Gly-peptide	N	MS	Glu	Glu	Asp	Glu	Gly	Ile	Gln	Lys	Vidmar et al., 2017
protein ccdA	P62552	1-72	peptide-Glu35+Ala-peptide	P		Met	Gln	Asn	Glu	Ala	Arg	Arg	Leu	Van Melderen et al., 1996
protein ccdA	P62552	1-72	peptide-Glu54+Val-peptide	P		Gly	Met	Ala	Glu	Val	Ala	Arg	Phe	Van Melderen et al., 1996
protein ccdA	P62552	1-72	peptide-Glu60+Met-peptide	P		Arg	Phe	Ile	Glu	Met	Asn	Gly	Ser	Van Melderen et al., 1996
Protein CutA	O60888		peptide-Glu108+Trp-peptide	N	MS	Ser	Ile	Tyr	Glu	Trp	Lys	Gly	Lys	Vidmar et al., 2017
Protein DEK	P35659		peptide-Glu64+Arg-peptide	N	MS	Lys	Lys	Val	Glu	Arg	Leu	Thr	Met	Vidmar et al., 2017
Protein DEK	P35659		peptide-Glu361+Arg-peptide	N	MS	Asp	Leu	Thr	Glu	Arg	Lys	Asp	Phe	Vidmar et al., 2017
protein diaphanous homolog 1 isoform 2	O60610-2	1-1248	peptide-Glu878+Gln-peptide	N	MS	Pro	Glu	Pro	Glu	Gln	Leu	Lys	Met	Schilling & Overall, 2008
Protein disulfide-isomerase	P07237		peptide-Glu348+Gly-peptide	N	MS	Arg	Phe	Leu	Glu	Gly	Lys	Ile	Lys	Vidmar et al., 2017
Protein disulfide-isomerase	P07237		peptide-Glu36+Ala-peptide	N	MS	Asn	Phe	Ala	Glu	Ala	Leu	Ala	Ala	Vidmar et al., 2017
Protein disulfide-isomerase	P07237		peptide-Glu62+Tyr-peptide	N	MS	Leu	Ala	Pro	Glu	Tyr	Ala	Lys	Ala	Vidmar et al., 2017
Protein disulfide-isomerase	P07237		peptide-Glu23+Asp-peptide	N	MS	Pro	Glu	Glu	Glu	Asp	His	Val	Leu	Vidmar et al., 2017
Protein disulfide-isomerase	P07237		peptide-Glu418+Asn-peptide	N	MS	Lys	Asp	His	Glu	Asn	Ile	Val	Ile	Vidmar et al., 2017
Protein disulfide-isomerase	P07237		peptide-Glu303+Phe-peptide	N	MS	Arg	Ile	Leu	Glu	Phe	Phe	Gly	Leu	Vidmar et al., 2017
Protein disulfide-isomerase	P07237		peptide-Glu433+Ala-peptide	N	MS	Asn	Glu	Val	Glu	Ala	Val	Lys	Val	Vidmar et al., 2017
Protein disulfide-isomerase	P07237		peptide-Glu460+Arg-peptide	N	MS	Tyr	Asn	Gly	Glu	Arg	Thr	Leu	Asp	Vidmar et al., 2017
Protein disulfide-isomerase	P07237		peptide-Glu333+Leu-peptide	N	MS	Glu	Ser	Glu	Glu	Leu	Thr	Ala	Glu	Vidmar et al., 2017
Protein disulfide-isomerase	P07237		peptide-Glu330+Ser-peptide	N	MS	Tyr	Lys	Pro	Glu	Ser	Glu	Glu	Leu	Vidmar et al., 2017
Protein disulfide-isomerase	P07237		peptide-Glu76+Ile-peptide	N	MS	Glu	Gly	Ser	Glu	Ile	Arg	Leu	Ala	Vidmar et al., 2017
Protein disulfide-isomerase A3	P30101		peptide-Glu372+Ser-peptide	N	MS	Pro	Ile	Pro	Glu	Ser	Asn	Asp	Gly	Vidmar et al., 2017
Protein disulfide-isomerase A3	P30101		peptide-Glu421+Lys-peptide	N	MS	Glu	Leu	Gly	Glu	Lys	Leu	Ser	Lys	Vidmar et al., 2017
Protein disulfide-isomerase A3	P30101		peptide-Glu317+Ser-peptide	N	MS	Phe	Gly	Leu	Glu	Ser	Thr	Ala	Gly	Vidmar et al., 2017
Protein disulfide-isomerase A3	P30101		peptide-Glu446+Val-peptide	N	MS	Ser	Pro	Tyr	Glu	Val	Arg	Gly	Phe	Vidmar et al., 2017
Protein disulfide-isomerase A3	P30101		peptide-Glu418+Leu-peptide	N	MS	Lys	Tyr	Lys	Glu	Leu	Gly	Glu	Lys	Vidmar et al., 2017
Protein disulfide-isomerase A3	P30101		peptide-Glu36+Ser-peptide	N	MS	Asp	Asn	Phe	Glu	Ser	Arg	Ile	Ser	Vidmar et al., 2017
Protein disulfide-isomerase A3	P30101		peptide-Glu111+Ala-peptide	N	MS	Asp	Gly	Glu	Glu	Ala	Gly	Ala	Tyr	Vidmar et al., 2017
Protein disulfide-isomerase A3	P30101		peptide-Glu483+Ala-peptide	N	MS	Leu	Gln	Arg	Glu	Ala	Thr	Asn	Pro	Vidmar et al., 2017
Protein disulfide-isomerase A3	P30101		peptide-Glu472+Leu-peptide	N	MS	Gly	Gly	Arg	Glu	Leu	Ser	Asp	Phe	Vidmar et al., 2017
protein disulfide-isomerase A3 precursor	P30101	25-505	peptide-Glu144+Phe-peptide	N		Thr	Glu	Glu	Glu	Phe	Lys	Lys	Phe	Silvennoinen et al., 2004
protein disulfide-isomerase A3 precursor	P30101	25-505	peptide-Glu170+Phe-peptide	N		Ala	His	Ser	Glu	Phe	Leu	Lys	Ala	Silvennoinen et al., 2004
protein disulfide-isomerase A3 precursor	P30101	25-505	peptide-Glu224+Gln-peptide	N		Ala	Tyr	Thr	Glu	Gln	Lys	Met	Thr	Silvennoinen et al., 2004
protein disulfide-isomerase A3 precursor	P30101	25-505	peptide-Glu238+Asn-peptide	N		Phe	Ile	Gln	Glu	Asn	Ile	Phe	Gly	Silvennoinen et al., 2004
protein disulfide-isomerase A3 precursor	P30101	25-505	peptide-Glu350+Arg-peptide	N		Lys	Ala	Leu	Glu	Arg	Phe	Leu	Gln	Silvennoinen et al., 2004
protein disulfide-isomerase A3 precursor	P30101	25-505	peptide-Glu142+Glu-peptide	N	MS	Leu	Arg	Thr	Glu	Glu	Glu	Phe	Lys	Schilling & Overall, 2008
protein disulfide-isomerase A3 precursor	P30101	25-505	peptide-Glu143+Glu-peptide	N	MS	Arg	Thr	Glu	Glu	Glu	Phe	Lys	Lys	Schilling & Overall, 2008
Protein disulfide-isomerase A4	P13667		peptide-Glu598+Gly-peptide	N	MS	Tyr	Lys	Val	Glu	Gly	Phe	Pro	Thr	Vidmar et al., 2017
Protein disulfide-isomerase A4	P13667		peptide-Glu222+Leu-peptide	N	MS	Ala	Ala	Lys	Glu	Leu	Ser	Lys	Arg	Vidmar et al., 2017
Protein disulfide-isomerase A4	P13667		peptide-Glu633+His-peptide	N	MS	Phe	Ile	Glu	Glu	His	Ala	Thr	Lys	Vidmar et al., 2017
Protein disulfide-isomerase A4	P13667		peptide-Glu481+Ser-peptide	N	MS	Ile	Leu	Asp	Glu	Ser	Gly	Lys	Lys	Vidmar et al., 2017
Protein disulfide-isomerase A4	P13667		peptide-Glu289+Ile-peptide	N	MS	Pro	Ser	Lys	Glu	Ile	Leu	Thr	Leu	Vidmar et al., 2017
Protein disulfide-isomerase A4	P13667		peptide-Glu61+Asn-peptide	N	MS	Val	Lys	Glu	Glu	Asn	Gly	Val	Leu	Vidmar et al., 2017
protein disulfide-isomerase A4 precursor	P13667	21-645	peptide-Glu240+Thr-peptide	N	MS	Ala	Thr	Ala	Glu	Thr	Asp	Leu	Ala	Schilling & Overall, 2008
protein disulfide-isomerase A4 precursor	P13667	21-645	peptide-Glu549+Phe-peptide	N	MS	Val	Leu	Ile	Glu	Phe	Tyr	Ala	Pro	Schilling & Overall, 2008
Protein disulfide-isomerase A6	Q15084		peptide-Gly391+Arg-peptide	N	MS	Leu	Ser	Phe	Gly	Arg	Gly	Ser	Thr	Vidmar et al., 2017
Protein disulfide-isomerase A6	Q15084		peptide-Glu387+Leu-peptide	N	MS	Phe	Leu	Arg	Glu	Leu	Ser	Phe	Gly	Vidmar et al., 2017
Protein disulfide-isomerase A6	Q15084		peptide-Glu408+Arg-peptide	N	MS	Thr	Ile	Val	Glu	Arg	Glu	Pro	Trp	Vidmar et al., 2017
Protein disulfide-isomerase A6	Q15084		peptide-Glu431+Leu-peptide	N	MS	Ser	Asp	Val	Glu	Leu	Asp	Asp	Leu	Vidmar et al., 2017
protein disulfide-isomerase precursor	P07237	18-508	peptide-Glu147+Ser-peptide	N	MS	Ala	Ala	Ala	Glu	Ser	Leu	Val	Glu	Schilling & Overall, 2008
Protein DJ-1	Q99497		peptide-Glu94+Gln-peptide	N	MS	Ile	Leu	Lys	Glu	Gln	Glu	Asn	Arg	Vidmar et al., 2017
Protein DJ-1	Q99497		peptide-Glu96+Asn-peptide	N	MS	Lys	Glu	Gln	Glu	Asn	Arg	Lys	Gly	Vidmar et al., 2017
Protein DJ-1	Q99497		peptide-Glu143+Asn-peptide	N	MS	Thr	Tyr	Ser	Glu	Asn	Arg	Val	Glu	Vidmar et al., 2017
Protein DJ-1	Q99497		peptide-Glu176+Val-peptide	N	MS	Asn	Gly	Lys	Glu	Val	Ala	Ala	Gln	Vidmar et al., 2017
Protein DJ-1	Q99497		peptide-Asp149+Gly-peptide	N	MS	Val	Glu	Lys	Asp	Gly	Leu	Ile	Leu	Vidmar et al., 2017
Protein DJ-1	Q99497		peptide-Glu147+Lys-peptide	N	MS	Asn	Arg	Val	Glu	Lys	Asp	Gly	Leu	Vidmar et al., 2017
Protein dpy-30 homolog	Q9C005		peptide-Glu20+Tyr-peptide	N	MS	Pro	His	Ser	Glu	Tyr	Gly	Leu	Thr	Vidmar et al., 2017
Protein dpy-30 homolog	Q9C005		peptide-Glu8+Gly-peptide	N	MS	Gln	Met	Leu	Glu	Gly	Gln	Thr	Gln	Vidmar et al., 2017
protein Dr1	Q01658	1-176	peptide-Glu24+Thr-peptide	N	MS	Met	Ile	Lys	Glu	Thr	Leu	Pro	Asn	Schilling & Overall, 2008
Protein Dr1	Q01658		peptide-Glu45+Phe-peptide	N	MS	Cys	Cys	Thr	Glu	Phe	Ile	His	Leu	Vidmar et al., 2017
Protein Dr1	Q01658		peptide-Glu124+Leu-peptide	N	MS	Gln	Gln	Gln	Glu	Leu	Phe	Ala	Lys	Vidmar et al., 2017
protein FAM10A5	Q8NFI4	32-48	EWVE+SMGGKVPPATQK	N	MS	Glu	Trp	Val	Glu	Ser	Met	Gly	Gly	Schilling & Overall, 2008
protein FAM10A5	Q8NFI4	1-369	peptide-Glu27+Met-peptide	N	MS	His	Thr	Glu	Glu	Met	Arg	Phe	Leu	Schilling & Overall, 2008
Protein FAM136A	Q96C01		peptide-Glu71+Leu-peptide	N	MS	Val	Thr	Ser	Glu	Leu	Glu	Lys	Phe	Vidmar et al., 2017
Protein FAM47E	Q6ZV65		peptide-Glu202+Glu-peptide	N	MS	Trp	Leu	Tyr	Glu	Glu	Lys	Pro	His	Vidmar et al., 2017
Protein FAM49B	Q9NUQ9		peptide-Glu51+Asp-peptide	N	MS	Gly	Ile	Leu	Glu	Asp	Leu	Gln	Ser	Vidmar et al., 2017
Protein FAM49B	Q9NUQ9		peptide-Glu24+Asn-peptide	N	MS	Leu	Asp	Phe	Glu	Asn	Ala	Gln	Pro	Vidmar et al., 2017
Protein FAM50A	Q14320		peptide-Glu10+Ala-peptide	N	MS	Ala	Ala	Ser	Glu	Ala	Gly	Arg	Ala	Vidmar et al., 2017
protein grpE	P09372	1-197	peptide-Glu24+Ile-peptide	N	MS	Gln	His	Glu	Glu	Ile	Glu	Ala	Val	Timmer et al., 2009
Protein HEXIM1	O94992		peptide-Glu116+Leu-peptide	N	MS	Pro	Glu	Ala	Glu	Leu	Leu	Ala	Gln	Vidmar et al., 2017
Protein HEXIM1	O94992		peptide-Glu311+Ser-peptide	N	MS	Leu	Arg	Leu	Glu	Ser	Lys	Arg	Leu	Vidmar et al., 2017
Protein HEXIM1	O94992		peptide-Glu126+Ala-peptide	N	MS	His	Asp	Ser	Glu	Ala	Ser	Lys	Leu	Vidmar et al., 2017
Protein HEXIM1	O94992		peptide-Glu350+Arg-peptide	N	MS	Arg	Gln	Gln	Glu	Arg	Ala	Pro	Leu	Vidmar et al., 2017
Protein Hook homolog 3	Q86VS8		peptide-Glu225+Arg-peptide	N	MS	Val	Leu	Met	Glu	Arg	Leu	Asn	Gln	Vidmar et al., 2017
Protein LYRIC	Q86UE4		peptide-Glu471+Asp-peptide	N	MS	Glu	Ile	Arg	Glu	Asp	Leu	Pro	Val	Vidmar et al., 2017
Protein LYRIC	Q86UE4		peptide-Glu91+Ala-peptide	N	MS	Lys	Arg	Glu	Glu	Ala	Ala	Ala	Val	Vidmar et al., 2017
Protein LYRIC	Q86UE4		peptide-Glu542+Thr-peptide	N	MS	Ile	Leu	Gln	Glu	Thr	Asp	Lys	Ser	Vidmar et al., 2017
Protein mago nashi homolog	P61326		peptide-Glu59+Leu-peptide	N	MS	Val	Met	Glu	Glu	Leu	Lys	Arg	Ile	Vidmar et al., 2017
Protein Mdm4	O15151	127-137	M+DIPSQDQLK	N	MS	-	-	-	Met	Asp	Ile	Pro	Ser	Schilling & Overall, 2008
protein NDRG1	Q92597	363-388	peptide-Asp373+Ile-peptide	N	MS	Ala	His	Leu	Asp	Ile	Thr	Pro	Asn	Schilling & Overall, 2008
protein NDRG1	Q92597	363-388	peptide-Glu368+Gly-peptide	N	MS	His	Thr	Ser	Glu	Gly	Ala	His	Leu	Schilling & Overall, 2008
Protein NDRG1	Q92597		peptide-Glu18+Lys-peptide	N	MS	Pro	Leu	Val	Glu	Lys	Gly	Glu	Thr	Vidmar et al., 2017
Protein PBDC1	Q9BVG4		peptide-Glu203+Gly-peptide	N	MS	Glu	Lys	Glu	Glu	Gly	Ile	Asn	Arg	Vidmar et al., 2017
Protein phosphatase 1 regulatory subunit 12A	O14974		peptide-Glu1000+Leu-peptide	N	MS	Met	Glu	Glu	Glu	Leu	Lys	Met	Leu	Vidmar et al., 2017
Protein phosphatase 1 regulatory subunit 12A	O14974		peptide-Glu1017+Asn-peptide	N	MS	Leu	Lys	Asp	Glu	Asn	Gly	Ala	Leu	Vidmar et al., 2017
protein phosphatase 1 regulatory subunit 14B	Q96C90	114-134	ELLVDCYKPTE+AFISGLLDK	N	MS	Lys	Pro	Thr	Glu	Ala	Phe	Ile	Ser	Schilling & Overall, 2008
protein phosphatase 1 regulatory subunit 14B	Q96C90	114-134	E+LLVDCYKPTEAFISGLLDK	N	MS	-	-	-	Glu	Leu	Leu	Val	Asp	Schilling & Overall, 2008
Protein phosphatase 1 regulatory subunit 14B	Q96C90		peptide-Glu104+Ser-peptide	N	MS	Leu	Asp	Met	Glu	Ser	Asp	Asp	Ala	Vidmar et al., 2017
protein phosphatase 1G	O15355	1-546	peptide-Glu355+Ala-peptide	N	MS	Val	Val	Ser	Glu	Ala	Gly	Lys	Ala	Schilling & Overall, 2008
Protein phosphatase 1G	O15355		peptide-Glu66+Val-peptide	N	MS	Gly	Gly	Glu	Glu	Val	Ala	Leu	Tyr	Vidmar et al., 2017
Protein phosphatase 1G	O15355		peptide-Glu52+Thr-peptide	N	MS	Leu	Asp	Ser	Glu	Thr	Ala	Met	Phe	Vidmar et al., 2017
protein phosphatase 1G variant	Q59GB2	1-347	peptide-Glu156+Ala-peptide	N	MS	Val	Val	Ser	Glu	Ala	Gly	Lys	Ala	Schilling & Overall, 2008
protein phosphatase 2	Q8NHV8	1-667	peptide-Glu422+Leu-peptide	N	MS	Ala	Ile	Val	Glu	Leu	Ala	Glu	Asp	Schilling & Overall, 2008
Protein regulator of cytokinesis 1	O43663	1-620	peptide-Glu280+Met-peptide	N	MS	Arg	Gln	Leu	Glu	Met	Gln	Lys	Ser	Schilling & Overall, 2008
protein S100-A11	P31949	1-105	peptide-Glu38+Phe-peptide	N	MS	Ser	Lys	Thr	Glu	Phe	Leu	Ser	Phe	Schilling & Overall, 2008
Protein SET	Q01105		peptide-Asp178+Leu-peptide	N	MS	Ser	Gly	Lys	Asp	Leu	Thr	Lys	Arg	Vidmar et al., 2017
Protein SET	Q01105		peptide-Glu43+Ala-peptide	N	MS	Glu	Gln	Gln	Glu	Ala	Ile	Glu	His	Vidmar et al., 2017
Protein SET	Q01105		peptide-Glu65+Ile-peptide	N	MS	Ala	Ser	Glu	Glu	Ile	Leu	Lys	Val	Vidmar et al., 2017
Protein SET	Q01105		peptide-Glu26+Thr-peptide	N	MS	Gly	Pro	Glu	Glu	Thr	Ser	Ala	Ser	Vidmar et al., 2017
Protein SET	Q01105		peptide-Glu170+Ile-peptide	N	MS	Lys	Ser	Thr	Glu	Ile	Lys	Trp	Lys	Vidmar et al., 2017
Protein SET	Q01105		peptide-Glu115+Ala-peptide	N	MS	Glu	Asp	Glu	Glu	Ala	Leu	His	Tyr	Vidmar et al., 2017
Protein SET	Q01105		peptide-Glu70+Gln-peptide	N	MS	Leu	Lys	Val	Glu	Gln	Lys	Tyr	Asn	Vidmar et al., 2017
Protein SET	Q01105		peptide-Glu54+Ile-peptide	N	MS	Val	Gln	Asn	Glu	Ile	Asp	Arg	Leu	Vidmar et al., 2017
Protein SGT1 homolog	Q9Y2Z0		peptide-Glu89+Tyr-peptide	N	MS	Gly	Ile	Cys	Glu	Tyr	His	Glu	Lys	Vidmar et al., 2017
Protein SGT1 homolog	Q9Y2Z0		peptide-Glu334+Ser-peptide	N	MS	Ser	Phe	Met	Glu	Ser	Gly	Gly	Thr	Vidmar et al., 2017
protein sufB	P77522	1-495	peptide-Glu23+Gly-peptide	N	MS	Asn	Tyr	Lys	Glu	Gly	Phe	Phe	Thr	Timmer et al., 2009
protein TFG	Q92734	1-400	peptide-Glu176+Ile-peptide	N	MS	Asn	Gln	Asp	Glu	Ile	Asn	Lys	Asn	Schilling & Overall, 2008
Protein TFG	Q92734		peptide-Gly389+Gln-peptide	N	MS	Pro	Pro	Phe	Gly	Gln	Gly	Tyr	Thr	Vidmar et al., 2017
Protein-glutamine gamma-glutamyltransferase 2	P21980		peptide-Glu454+Ala-peptide	N	MS	Glu	Glu	Arg	Glu	Ala	Phe	Thr	Arg	Vidmar et al., 2017
Protein-glutamine gamma-glutamyltransferase 2	P21980		peptide-Glu669+Ser-peptide	N	MS	Val	Asn	Phe	Glu	Ser	Asp	Lys	Leu	Vidmar et al., 2017
Protein-glutamine gamma-glutamyltransferase 2	P21980		peptide-Glu352+Gly-peptide	N	MS	Pro	Gly	Tyr	Glu	Gly	Trp	Gln	Ala	Vidmar et al., 2017
Protein-glutamine gamma-glutamyltransferase 2	P21980		peptide-Glu70+Ala-peptide	N	MS	Pro	Ser	Gln	Glu	Ala	Gly	Thr	Lys	Vidmar et al., 2017
Protein-glutamine gamma-glutamyltransferase 2	P21980		peptide-Glu647+Val-peptide	N	MS	Ala	Gly	Glu	Glu	Val	Lys	Val	Arg	Vidmar et al., 2017
Protein-glutamine gamma-glutamyltransferase 2	P21980		peptide-Glu29+Lys-peptide	N	MS	Leu	Cys	Arg	Glu	Lys	Leu	Val	Val	Vidmar et al., 2017
Protein-glutamine gamma-glutamyltransferase 2	P21980		peptide-Glu15+Thr-peptide	N	MS	Leu	Glu	Leu	Glu	Thr	Asn	Gly	Arg	Vidmar et al., 2017
Protein-glutamine gamma-glutamyltransferase 2	P21980		peptide-Glu13+Leu-peptide	N	MS	Cys	Asp	Leu	Glu	Leu	Glu	Thr	Asn	Vidmar et al., 2017
Protein-glutamine gamma-glutamyltransferase 2	P21980		peptide-Glu339+Ser-peptide	N	MS	Cys	Trp	Val	Glu	Ser	Trp	Met	Thr	Vidmar et al., 2017
Protein-glutamine gamma-glutamyltransferase 2	P21980		peptide-Glu366+Gly-peptide	N	MS	Glu	Lys	Ser	Glu	Gly	Thr	Tyr	Cys	Vidmar et al., 2017
Protein-glutamine gamma-glutamyltransferase 2	P21980		peptide-Glu632+Gln-peptide	N	MS	Leu	Thr	Glu	Glu	Gln	Lys	Thr	Val	Vidmar et al., 2017
Protein-glutamine gamma-glutamyltransferase 2	P21980		peptide-Glu435+Arg-peptide	N	MS	Gly	Arg	Asp	Glu	Arg	Glu	Asp	Ile	Vidmar et al., 2017
Protein-L-isoaspartate(D-aspartate) O-methyltransferase	P22061		peptide-Glu70+Leu-peptide	N	MS	Tyr	Ala	Leu	Glu	Leu	Leu	Phe	Asp	Vidmar et al., 2017
Prothymosin alpha	P06454		peptide-Glu84+Ser-peptide	N	MS	Glu	Glu	Ala	Glu	Ser	Ala	Thr	Gly	Vidmar et al., 2017
PRPF40A protein	Q05C41	1-414	peptide-Glu202+Ser-peptide	N	MS	Lys	Ala	Glu	Glu	Ser	Ser	Lys	Gln	Schilling & Overall, 2008
PSAP protein	Q5BJH1	1-240	peptide-Glu140+Lys-peptide	N	MS	Arg	Asn	Leu	Glu	Lys	Asn	Ser	Thr	Schilling & Overall, 2008
Purine nucleoside phosphorylase	P00491		peptide-Glu259+Val-peptide	N	MS	Asn	His	Glu	Glu	Val	Leu	Ala	Ala	Vidmar et al., 2017
Putative elongation factor 1-alpha-like 3	Q5VTE0	1-462	peptide-Glu388+Asp-peptide	N	MS	Lys	Lys	Leu	Glu	Asp	Gly	Pro	Lys	Schilling & Overall, 2008
Putative elongation factor 1-alpha-like 3	Q5VTE0	1-462	peptide-Asp403+Met-peptide	N	MS	Ala	Ile	Val	Asp	Met	Val	Pro	Gly	Schilling & Overall, 2008
Putative elongation factor 1-alpha-like 3	Q5VTE0	1-462	peptide-Glu268+Thr-peptide	N	MS	Gly	Arg	Val	Glu	Thr	Gly	Val	Leu	Schilling & Overall, 2008
Putative elongation factor 1-alpha-like 3	Q5VTE0	1-462	peptide-Glu413+Ser-peptide	N	MS	Met	Cys	Val	Glu	Ser	Phe	Ser	Asp	Schilling & Overall, 2008
Putative elongation factor 1-alpha-like 3	Q5VTE0	1-462	peptide-Glu168+Glu-peptide	N	MS	Lys	Arg	Tyr	Glu	Glu	Ile	Val	Lys	Schilling & Overall, 2008
Putative elongation factor 1-alpha-like 3	Q5VTE0	1-462	peptide-Glu169+Ile-peptide	N	MS	Arg	Tyr	Glu	Glu	Ile	Val	Lys	Glu	Schilling & Overall, 2008
Putative elongation factor 1-alpha-like 3	Q5VTE0		peptide-Asp428+Met-peptide	N	MS	Ala	Val	Arg	Asp	Met	Arg	Gln	Thr	Vidmar et al., 2017
Putative elongation factor 1-alpha-like 3	Q5VTE0		peptide-Glu122+Phe-peptide	N	MS	Gly	Val	Gly	Glu	Phe	Glu	Ala	Gly	Vidmar et al., 2017
Putative elongation factor 1-alpha-like 3	Q5VTE0		peptide-Glu377+Lys-peptide	N	MS	Glu	Leu	Lys	Glu	Lys	Ile	Asp	Arg	Vidmar et al., 2017
Putative elongation factor 1-alpha-like 3	Q5VTE0		peptide-Glu288+Val-peptide	N	MS	Val	Thr	Thr	Glu	Val	Lys	Ser	Val	Vidmar et al., 2017
Putative elongation factor 1-alpha-like 3	Q5VTE0		peptide-Glu230+Ala-peptide	N	MS	Thr	Leu	Leu	Glu	Ala	Leu	Asp	Cys	Vidmar et al., 2017
Putative elongation factor 1-alpha-like 3	Q5VTE0		peptide-Asp252+Val-peptide	N	MS	Pro	Leu	Gln	Asp	Val	Tyr	Lys	Ile	Vidmar et al., 2017
Putative elongation factor 1-alpha-like 3	Q5VTE0		peptide-Glu124+Ala-peptide	N	MS	Gly	Glu	Phe	Glu	Ala	Gly	Ile	Ser	Vidmar et al., 2017
putative heat shock protein HSP 90-alpha A2	Q14568	61-74	E+SLTDPSKLDSGK	N	MS	-	-	-	Glu	Ser	Leu	Thr	Asp	Schilling & Overall, 2008
putative heat shock protein HSP 90-alpha A2	Q14568	1-343	peptide-Glu120+Ala-peptide	N	MS	Ala	Phe	Met	Glu	Ala	Leu	Gln	Ala	Schilling & Overall, 2008
putative heat shock protein HSP 90-alpha A2	Q14568	1-343	peptide-Glu42+Ile-peptide	N	MS	Ser	Asn	Lys	Glu	Ile	Phe	Leu	Arg	Schilling & Overall, 2008
putative heat shock protein HSP 90-alpha A2	Q14568	1-343	peptide-Glu192+Asp-peptide	N	MS	His	Leu	Lys	Glu	Asp	Gln	Thr	Glu	Schilling & Overall, 2008
Putative heat shock protein HSP 90-alpha A4	Q58FG1	2-14	E+SLTDPSKLDSGK	N	MS	-	-	-	Glu	Ser	Leu	Thr	Asp	Schilling & Overall, 2008
putative heat shock protein HSP 90-beta-3	Q58FF7	56-69	E+SLTDPSKLDSGK	N	MS	-	-	-	Glu	Ser	Leu	Thr	Asp	Schilling & Overall, 2008
putative heat shock protein HSP 90-beta-3	Q58FF7	1-597	peptide-Glu166+Asp-peptide	N	MS	His	Leu	Lys	Glu	Asp	Gln	Thr	Glu	Schilling & Overall, 2008
putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	O43143	452-463	VE+SLLVTAISK	N	MS	-	-	Val	Glu	Ser	Leu	Leu	Val	Schilling & Overall, 2008
Putative RNA-binding protein Luc7-like 1	Q9NQ29		peptide-Glu118+Val-peptide	N	MS	Ile	Ser	Ala	Glu	Val	Ser	Ala	Lys	Vidmar et al., 2017
Putative RNA-binding protein Luc7-like 2	Q9Y383		peptide-Glu83+Leu-peptide	N	MS	Phe	Phe	Phe	Glu	Leu	Asp	Ala	Met	Vidmar et al., 2017
Putative RNA-binding protein Luc7-like 2	Q9Y383		peptide-Asp64+Leu-peptide	N	MS	Lys	Val	His	Asp	Leu	Ala	Leu	Arg	Vidmar et al., 2017
Putative RNA-binding protein Luc7-like 2	Q9Y383		peptide-Glu118+Val-peptide	N	MS	Ile	Ser	Ala	Glu	Val	Ala	Ala	Lys	Vidmar et al., 2017
putative rRNA methyltransferase 3	Q8IY81	661-678	ILDPE+GLALGAVIASSK	N	MS	Leu	Asp	Pro	Glu	Gly	Leu	Ala	Leu	Schilling & Overall, 2008
putative tubulin beta chain-like protein ENSP00000290377	A6NKZ8	151-169	D+LNHLVSATMSGVTTCLR	N	MS	-	-	-	Asp	Leu	Asn	His	Leu	Schilling & Overall, 2008
putative uncharacterized protein	Q9BR23	14-40	peptide-Glu30+Phe-peptide	N	MS	Ala	Leu	Ala	Glu	Phe	Ala	Ala	Leu	Schilling & Overall, 2008
putative uncharacterized protein	Q2NKY6	1-192	peptide-Asp171+Ile-peptide	N	MS	Lys	Asn	Lys	Asp	Ile	Arg	Lys	Phe	Schilling & Overall, 2008
putative uncharacterized protein	Q96BE0	1-269	peptide-Glu121+Asn-peptide	N	MS	Thr	Gly	Lys	Glu	Asn	Lys	Ile	Thr	Schilling & Overall, 2008
putative uncharacterized protein	Q86Z22	1-226	peptide-Glu149+Ile-peptide	N	MS	Gly	Ser	Arg	Glu	Ile	Lys	Ser	Gln	Schilling & Overall, 2008
putative uncharacterized protein DKFZp434B0914	Q9NSY3	1-55	peptide-Glu30+Met-peptide	N	MS	Cys	Thr	Val	Glu	Met	Pro	Ile	Leu	Schilling & Overall, 2008
putative uncharacterized protein DKFZp434G0719	Q9NSU9	1-375	peptide-Glu196+Lys-peptide	N	MS	Gly	Arg	Gln	Glu	Lys	Met	Ser	Ile	Schilling & Overall, 2008
putative uncharacterized protein DKFZp566L241	Q5JWW0	46-62	GIYAYG+FEKPSAIQQR	N	MS	Tyr	Ala	Tyr	Gly	Phe	Glu	Lys	Pro	Schilling & Overall, 2008
putative uncharacterized protein DKFZp586B1621	Q9UFX5	1-165	peptide-Glu118+Ala-peptide	N	MS	Lys	Ser	Ala	Glu	Ala	Ala	Ala	Glu	Schilling & Overall, 2008
putative uncharacterized protein DKFZp686A1668	Q68CT4	875-897	peptide-Glu882+Gly-peptide	N	MS	Pro	Gly	Leu	Glu	Gly	Gly	Leu	Val	Schilling & Overall, 2008
putative uncharacterized protein DKFZp686M09245	Q6MZV5	476-489	NTLE+WCLPVIDAK	N	MS	Asn	Thr	Leu	Glu	Trp	Cys	Leu	Pro	Schilling & Overall, 2008
putative uncharacterized protein DKFZp686M09245	Q6MZV5	274-284	E+VDNFVDKLK	N	MS	-	-	-	Glu	Val	Asp	Asn	Phe	Schilling & Overall, 2008
putative uncharacterized protein DKFZp781C0425	Q68DU7	1-127	peptide-Glu52+Ile-peptide	N	MS	Leu	Ser	Ile	Glu	Ile	Gly	His	Glu	Schilling & Overall, 2008
putative uncharacterized protein GORASP2	Q53TE3	1-452	peptide-Glu233+Val-peptide	N	MS	Gly	Phe	Thr	Glu	Val	Gln	Leu	Ser	Schilling & Overall, 2008
putative uncharacterized protein HSPD1	Q53SE2	180-191	E+IGNIISDAMK	N	MS	-	-	-	Glu	Ile	Gly	Asn	Ile	Schilling & Overall, 2008
putative uncharacterized protein HSPD1	Q53QD5	2-15	CEFQD+AYVLLSEK	N	MS	Glu	Phe	Gln	Asp	Ala	Tyr	Val	Leu	Schilling & Overall, 2008
putative uncharacterized protein IF2	Q53RV7	284-314	peptide-Glu297+Lys-peptide	N	MS	Ala	Ser	Glu	Glu	Lys	Ala	Glu	Thr	Schilling & Overall, 2008
putative uncharacterized protein SNCA	Q4W5L2	80-96	TVE+GAGSIAAATGFVK	N	MS	-	Thr	Val	Glu	Gly	Ala	Gly	Ser	Schilling & Overall, 2008
PYGL protein	Q6P1L4	214-228	SRPE+FMLPVHFYGK	N	MS	Ser	Arg	Pro	Glu	Phe	Met	Leu	Pro	Schilling & Overall, 2008
Pyridoxal kinase	O00764		peptide-Glu290+Leu-peptide	N	MS	Met	Gln	Leu	Glu	Leu	Arg	Met	Val	Vidmar et al., 2017
pyridoxine/pyridoxamine 5-phosphate oxidase	P0AFI7	2-218	peptide-Glu162+Leu-peptide	N	MS	Lys	Phe	Leu	Glu	Leu	Lys	Gln	Lys	Timmer et al., 2009
Pyruvate carboxylase, mitochondrial	P11498		peptide-Arg18+Thr-peptide	N	MS	Gly	Ile	Arg	Arg	Thr	Ser	Thr	Ala	Vidmar et al., 2017
Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial	P08559		peptide-Glu363+Leu-peptide	N	MS	Pro	Leu	Glu	Glu	Leu	Gly	Tyr	His	Vidmar et al., 2017
Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial	P08559		peptide-Glu309+Val-peptide	N	MS	Glu	Ile	Gln	Glu	Val	Arg	Ser	Lys	Vidmar et al., 2017
pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial precursor	P08559	30-390	peptide-Glu362+Glu-peptide	N	MS	Pro	Pro	Leu	Glu	Glu	Leu	Gly	Tyr	Schilling & Overall, 2008
Pyruvate dehydrogenase E1 component subunit beta, mitochondrial	P11177		peptide-Glu231+Arg-peptide	N	MS	Ala	Lys	Ile	Glu	Arg	Gln	Gly	Thr	Vidmar et al., 2017
Pyruvate dehydrogenase E1 component subunit beta, mitochondrial	P11177		peptide-Glu339+Asp-peptide	N	MS	Lys	Ile	Leu	Glu	Asp	Asn	Ser	Ile	Vidmar et al., 2017
Pyruvate dehydrogenase protein X component, mitochondrial	O00330		peptide-Glu174+His-peptide	N	MS	Val	Lys	Lys	Glu	His	Ile	Pro	Gly	Vidmar et al., 2017
pyruvate dehydrogenase [cytochrome]	P07003	1-572	peptide-Glu469+Met-peptide	N	MS	Val	Ala	Met	Glu	Met	Lys	Ala	Gly	Timmer et al., 2009
pyruvate kinase	Q504U3	177-211	peptide-Glu199+Thr-peptide	N	MS	Leu	Ser	Gly	Glu	Thr	Ala	Lys	Gly	Schilling & Overall, 2008
pyruvate kinase	Q504U3	1-366	peptide-Glu28+His-peptide	N	MS	Thr	Phe	Leu	Glu	His	Met	Cys	Arg	Schilling & Overall, 2008
pyruvate kinase	Q504U3	1-366	peptide-Glu167+Ser-peptide	N	MS	Gln	Met	Leu	Glu	Ser	Met	Ile	Lys	Schilling & Overall, 2008
Pyruvate kinase PKM	P14618		peptide-Glu304+Lys-peptide	N	MS	Ile	Pro	Ala	Glu	Lys	Val	Phe	Leu	Vidmar et al., 2017
Pyruvate kinase PKM	P14618		peptide-Glu7+Ala-peptide	N	MS	Pro	His	Ser	Glu	Ala	Gly	Thr	Ala	Vidmar et al., 2017
Pyruvate kinase PKM	P14618		peptide-Glu131+Val-peptide	N	MS	Gly	Thr	Ala	Glu	Val	Glu	Leu	Lys	Vidmar et al., 2017
Pyruvate kinase PKM	P14618		peptide-Glu285+Ala-peptide	N	MS	Glu	Ile	Leu	Glu	Ala	Ser	Asp	Gly	Vidmar et al., 2017
Pyruvate kinase PKM	P14618		peptide-Glu332+Ser-peptide	N	MS	Gln	Met	Leu	Glu	Ser	Met	Ile	Lys	Vidmar et al., 2017
Pyruvate kinase PKM	P14618		peptide-Glu133+Leu-peptide	N	MS	Ala	Glu	Val	Glu	Leu	Lys	Lys	Gly	Vidmar et al., 2017
Pyruvate kinase PKM	P14618		peptide-Glu118+Ile-peptide	N	MS	Lys	Gly	Pro	Glu	Ile	Arg	Thr	Gly	Vidmar et al., 2017
Pyruvate kinase PKM	P14618		peptide-Glu96+Ser-peptide	N	MS	Thr	Ala	Thr	Glu	Ser	Phe	Ala	Ser	Vidmar et al., 2017
Pyruvate kinase PKM	P14618		peptide-Glu169+Val-peptide	N	MS	Lys	Val	Val	Glu	Val	Gly	Ser	Lys	Vidmar et al., 2017
Pyruvate kinase PKM	P14618		peptide-Glu154+Asn-peptide	N	MS	Lys	Cys	Asp	Glu	Asn	Ile	Leu	Trp	Vidmar et al., 2017
Pyruvate kinase PKM	P14618		peptide-Glu397+Leu-peptide	N	MS	Leu	Phe	Glu	Glu	Leu	Arg	Arg	Leu	Vidmar et al., 2017
Pyruvate kinase PKM	P14618		peptide-Glu386+Ala-peptide	N	MS	Arg	Glu	Ala	Glu	Ala	Ala	Ile	Tyr	Vidmar et al., 2017
Pyruvate kinase PKM	P14618		peptide-Glu272+Asn-peptide	N	MS	Ser	Lys	Ile	Glu	Asn	His	Glu	Gly	Vidmar et al., 2017
Pyruvate kinase PKM	P14618		peptide-Glu223+Lys-peptide	N	MS	Ala	Val	Ser	Glu	Lys	Asp	Ile	Gln	Vidmar et al., 2017
Pyruvate kinase PKM	P14618		peptide-Glu28+His-peptide	N	MS	Thr	Phe	Leu	Glu	His	Met	Cys	Arg	Vidmar et al., 2017
Pyruvate kinase PKM	P14618		peptide-Glu373+Ala-peptide	N	MS	Tyr	Pro	Leu	Glu	Ala	Val	Arg	Met	Vidmar et al., 2017
Pyruvate kinase PKM	P14618		peptide-Glu86+Thr-peptide	N	MS	Tyr	His	Ala	Glu	Thr	Ile	Lys	Asn	Vidmar et al., 2017
Pyruvate kinase PKM	P14618		peptide-Glu196+Val-peptide	N	MS	Leu	Val	Thr	Glu	Val	Glu	Asn	Gly	Vidmar et al., 2017
Pyruvate kinase PKM	P14618		peptide-Glu63+Met-peptide	N	MS	Thr	Leu	Lys	Glu	Met	Ile	Lys	Ser	Vidmar et al., 2017
Pyruvate kinase PKM	P14618		peptide-Glu260+Lys-peptide	N	MS	Val	Leu	Gly	Glu	Lys	Gly	Lys	Asn	Vidmar et al., 2017
Quinone oxidoreductase PIG3	Q53FA7		peptide-Glu19+Val-peptide	N	MS	Tyr	Val	Lys	Glu	Val	Ala	Lys	Pro	Vidmar et al., 2017
rab GDP dissociation inhibitor beta	P50395	118-137	VPSTEAE+ALASSLMGLFEK	N	MS	Thr	Glu	Ala	Glu	Ala	Leu	Ala	Ser	Schilling & Overall, 2008
rab GDP dissociation inhibitor beta	P50395	364-379	EIRPALE+LLEPIEQK	N	MS	Pro	Ala	Leu	Glu	Leu	Leu	Glu	Pro	Schilling & Overall, 2008
Rab GDP dissociation inhibitor beta	P50395		peptide-Glu433+Met-peptide	N	MS	Asp	Phe	Glu	Glu	Met	Lys	Arg	Lys	Vidmar et al., 2017
Radixin	P35241		peptide-Glu444+Trp-peptide	N	MS	Glu	Ala	Thr	Glu	Trp	Gln	His	Lys	Vidmar et al., 2017
Radixin	P35241		peptide-Glu398+Ala-peptide	N	MS	Ala	Ala	Glu	Glu	Ala	Lys	Ser	Ala	Vidmar et al., 2017
Radixin	P35241		peptide-Glu522+Arg-peptide	N	MS	Gln	Lys	Asn	Glu	Arg	Val	Lys	Lys	Vidmar et al., 2017
Radixin	P35241		peptide-Glu503+Gly-peptide	N	MS	Leu	Ser	Asn	Glu	Gly	Val	Met	Asn	Vidmar et al., 2017
Radixin	P35241		peptide-Glu541+Thr-peptide	N	MS	Ala	Arg	Asp	Glu	Thr	Lys	Lys	Thr	Vidmar et al., 2017
Ragulator complex protein LAMTOR1	Q6IAA8		peptide-Glu18+Arg-peptide	N	MS	Asp	Arg	Glu	Glu	Arg	Lys	Leu	Leu	Vidmar et al., 2017
Ran-binding protein 3	Q9H6Z4		peptide-Glu247+Ala-peptide	N	MS	Ser	Glu	Glu	Glu	Ala	Cys	Glu	Lys	Vidmar et al., 2017
Ran-specific GTPase-activating protein	P43487		peptide-Glu82+Lys-peptide	N	MS	Lys	His	Lys	Glu	Lys	Gly	Ala	Ile	Vidmar et al., 2017
Ran-specific GTPase-activating protein	P43487		peptide-Glu146+Asn-peptide	N	MS	Leu	Asn	Ala	Glu	Asn	Ala	Gln	Lys	Vidmar et al., 2017
Ran-specific GTPase-activating protein	P43487		peptide-Glu69+Arg-peptide	N	MS	Glu	Trp	Lys	Glu	Arg	Gly	Thr	Gly	Vidmar et al., 2017
Ran-specific GTPase-activating protein	P43487		peptide-Glu164+Arg-peptide	N	MS	Glu	Ile	Glu	Glu	Arg	Glu	Lys	Lys	Vidmar et al., 2017
Ran-specific GTPase-activating protein	P43487		peptide-Glu20+Ser-peptide	N	MS	Asn	Thr	Asp	Glu	Ser	Asn	His	Asp	Vidmar et al., 2017
Ran-specific GTPase-activating protein	P43487		peptide-Glu136+Leu-peptide	N	MS	Pro	Lys	Pro	Glu	Leu	Leu	Ala	Ile	Vidmar et al., 2017
Ran-specific GTPase-activating protein	P43487		peptide-Glu185+Ala-peptide	N	MS	Glu	Lys	Leu	Glu	Ala	Leu	Ser	Val	Vidmar et al., 2017
Ras GTPase-activating protein-binding protein 1	Q13283		peptide-Glu209+Ile-peptide	N	MS	Pro	Val	Ser	Glu	Ile	Gln	Glu	Glu	Vidmar et al., 2017
Ras GTPase-activating protein-binding protein 1	Q13283		peptide-Glu305+Gln-peptide	N	MS	Arg	Val	Arg	Glu	Gln	Arg	Ile	Asn	Vidmar et al., 2017
ras GTPase-activating-like protein IQGAP1	P46940	1-1657	peptide-Glu405+Lys-peptide	N	MS	Gly	Val	Ala	Glu	Lys	Thr	Val	Leu	Schilling & Overall, 2008
Ras GTPase-activating-like protein IQGAP1	P46940		peptide-Glu547+Ala-peptide	N	MS	Leu	Ile	Asn	Glu	Ala	Leu	Asp	Glu	Vidmar et al., 2017
Ras GTPase-activating-like protein IQGAP1	P46940		peptide-Glu415+Ala-peptide	N	MS	Met	Asn	Pro	Glu	Ala	Gln	Leu	Pro	Vidmar et al., 2017
Ras GTPase-activating-like protein IQGAP1	P46940		peptide-Glu537+Arg-peptide	N	MS	Glu	Glu	His	Glu	Arg	Ile	Leu	Ala	Vidmar et al., 2017
Ras-related protein Rab-10	P61026		peptide-Glu168+Asp-peptide	N	MS	Thr	Leu	Ala	Glu	Asp	Ile	Leu	Arg	Vidmar et al., 2017
Ras-related protein Rab-10	P61026		peptide-Glu150+Thr-peptide	N	MS	Arg	Phe	Phe	Glu	Thr	Ser	Ala	Lys	Vidmar et al., 2017
Ras-related protein Rab-10	P61026		peptide-Glu160+Lys-peptide	N	MS	Ile	Asn	Ile	Glu	Lys	Ala	Phe	Leu	Vidmar et al., 2017
Ras-related protein Rab-11A	P62491		peptide-Glu171+Ile-peptide	N	MS	Ile	Leu	Thr	Glu	Ile	Tyr	Arg	Ile	Vidmar et al., 2017
ras-related protein Rab-14	P61106	171-201	peptide-Glu187+Ser-peptide	N	MS	Asn	Ala	Ala	Glu	Ser	Gly	Val	Gln	Schilling & Overall, 2008
Ras-related protein Rab-1B	Q9H0U4		peptide-Glu112+Asn-peptide	N	MS	Tyr	Ala	Ser	Glu	Asn	Val	Asn	Lys	Vidmar et al., 2017
Ras-related protein Rab-1B	Q9H0U4		peptide-Glu138+Phe-peptide	N	MS	Thr	Ala	Lys	Glu	Phe	Ala	Asp	Ser	Vidmar et al., 2017
Ras-related protein Rab-1B	Q9H0U4		peptide-Glu149+Thr-peptide	N	MS	Pro	Phe	Leu	Glu	Thr	Ser	Ala	Lys	Vidmar et al., 2017
Ras-related protein Rab-2A	P61019		peptide-Glu147+Thr-peptide	N	MS	Ile	Phe	Met	Glu	Thr	Ser	Ala	Lys	Vidmar et al., 2017
Ras-related protein Rab-35	Q15286		peptide-Glu148+Thr-peptide	N	MS	Gln	Leu	Phe	Glu	Thr	Ser	Ala	Lys	Vidmar et al., 2017
Ras-related protein Rab-5A	P20339		peptide-Glu117+Leu-peptide	N	MS	Trp	Val	Lys	Glu	Leu	Gln	Arg	Gln	Vidmar et al., 2017
Ras-related protein Rab-5A	P20339		peptide-Glu161+Thr-peptide	N	MS	Leu	Phe	Met	Glu	Thr	Ser	Ala	Lys	Vidmar et al., 2017
Ras-related protein Rab-5C	P51148		peptide-Glu162+Thr-peptide	N	MS	Leu	Phe	Met	Glu	Thr	Ser	Ala	Lys	Vidmar et al., 2017
ras-related protein Rab-7a	P51149	157-171	EAINVE+QAFQTIAR	N	MS	Ile	Asn	Val	Glu	Gln	Ala	Phe	Gln	Schilling & Overall, 2008
ras-related protein Rab-7a	P51149	113-126	DPE+NFPFVVLGNK	N	MS	-	Asp	Pro	Glu	Asn	Phe	Pro	Phe	Schilling & Overall, 2008
Ras-related protein Rab-8A	P61006		peptide-Glu159+Asn-peptide	N	MS	Ile	Asn	Val	Glu	Asn	Ala	Phe	Phe	Vidmar et al., 2017
Ras-related protein Rab-8A	P61006		peptide-Glu149+Thr-peptide	N	MS	Lys	Phe	Met	Glu	Thr	Ser	Ala	Lys	Vidmar et al., 2017
Ras-related protein Rap-1A	P62834		peptide-Glu30+Lys-peptide	N	MS	Ile	Phe	Val	Glu	Lys	Tyr	Asp	Pro	Vidmar et al., 2017
Ras-related protein Rap-1A	P62834		peptide-Glu145+Ser-peptide	N	MS	Ala	Phe	Leu	Glu	Ser	Ser	Ala	Lys	Vidmar et al., 2017
RcDNAJ9	Q2VIL4	1-252	peptide-Glu173+Ser-peptide	N	MS	Phe	Val	Lys	Glu	Ser	Thr	Gln	Lys	Schilling & Overall, 2008
RcDNAJ9	Q2VIL4	1-252	peptide-Glu147+Glu-peptide	N	MS	Gln	Tyr	Thr	Glu	Glu	Pro	Arg	Ile	Schilling & Overall, 2008
RcNSEP1	Q2VIK8	206-230	peptide-Glu215+Gly-peptide	N	MS	Glu	Val	Met	Glu	Gly	Ala	Asp	Asn	Schilling & Overall, 2008
Receptor expression-enhancing protein 5	Q00765		peptide-Glu173+Ala-peptide	N	MS	Ile	Thr	Lys	Glu	Ala	Lys	Lys	Ala	Vidmar et al., 2017
Regulation of nuclear pre-mRNA domain-containing protein 1B	Q9NQG5		peptide-Glu278+Tyr-peptide	N	MS	Lys	Leu	Glu	Glu	Tyr	Lys	Gln	Lys	Vidmar et al., 2017
Regulator of nonsense transcripts 1	Q92900		peptide-Glu767+Ile-peptide	N	MS	Gly	Gln	Glu	Glu	Ile	Ala	Ser	Ser	Vidmar et al., 2017
Replication factor C subunit 2	P35250		peptide-Glu49+Ile-peptide	N	MS	Lys	Leu	Asn	Glu	Ile	Val	Gly	Asn	Vidmar et al., 2017
Replication protein A 14 kDa subunit	P35244		peptide-Glu101+Ala-peptide	N	MS	Leu	Tyr	Asn	Glu	Ala	Val	Lys	Ile	Vidmar et al., 2017
Replication protein A 32 kDa subunit	P15927		peptide-Glu190+Ala-peptide	N	MS	Gly	Met	Ser	Glu	Ala	Gly	Asn	Phe	Vidmar et al., 2017
Reticulocalbin-1	Q15293		peptide-Glu254+Phe-peptide	N	MS	Gln	Phe	Asn	Glu	Phe	Arg	Asp	Leu	Vidmar et al., 2017
Reticulocalbin-1	Q15293		peptide-Glu172+Arg-peptide	N	MS	Pro	Arg	Asp	Glu	Arg	Arg	Phe	Lys	Vidmar et al., 2017
Reticulocalbin-1	Q15293		peptide-Glu237+Asn-peptide	N	MS	Ser	His	Glu	Glu	Asn	Gly	Pro	Glu	Vidmar et al., 2017
Reticulocalbin-1	Q15293		peptide-Glu44+Leu-peptide	N	MS	Pro	Asp	Ser	Glu	Leu	Gly	Glu	Arg	Vidmar et al., 2017
Reticulocalbin-1	Q15293		peptide-Glu298+Lys-peptide	N	MS	Asn	Lys	Asp	Glu	Lys	Leu	Thr	Lys	Vidmar et al., 2017
Reticulocalbin-1	Q15293		peptide-Glu268+Ile-peptide	N	MS	Asp	Lys	Asp	Glu	Ile	Arg	His	Trp	Vidmar et al., 2017
Reticulocalbin-1	Q15293		peptide-Glu190+Phe-peptide	N	MS	Thr	Arg	Glu	Glu	Phe	Thr	Ala	Phe	Vidmar et al., 2017
Reticulocalbin-1	Q15293		peptide-Glu307+Asn-peptide	N	MS	Glu	Ile	Leu	Glu	Asn	Trp	Asn	Met	Vidmar et al., 2017
Reticulocalbin-1	Q15293		peptide-Glu291+Ser-peptide	N	MS	Leu	Val	Tyr	Glu	Ser	Asp	Lys	Asn	Vidmar et al., 2017
Reticulocalbin-2	Q14257		peptide-Glu159+Lys-peptide	N	MS	Lys	Arg	Phe	Glu	Lys	Ala	Asn	Gln	Vidmar et al., 2017
Reticulocalbin-2	Q14257		peptide-Glu145+Ser-peptide	N	MS	Ala	Glu	Glu	Glu	Ser	Phe	Arg	Lys	Vidmar et al., 2017
Reticulocalbin-2	Q14257		peptide-Glu173+Phe-peptide	N	MS	Ser	Leu	Glu	Glu	Phe	Ile	Ala	Phe	Vidmar et al., 2017
reticulocalbin-2 precursor	Q14257	23-317	peptide-Glu83+Ser-peptide	N	MS	Phe	Leu	Thr	Glu	Ser	Glu	Leu	Ser	Schilling & Overall, 2008
Retinoic acid-induced protein 3	Q8NFJ5		peptide-Glu311+Thr-peptide	N	MS	Gly	Phe	Glu	Glu	Thr	Gly	Asp	Thr	Vidmar et al., 2017
rhabdomyosarcoma antigen MU-RMS-4012.	Q3BDU5	1-487	peptide-Glu317+Ala-peptide	N	MS	Ala	Ala	Lys	Glu	Ala	Lys	Leu	Arg	Schilling & Overall, 2008
rho GDP-dissociation inhibitor 1	P52565	153-167	EEYE+FLTPVEEAPK	N	MS	Glu	Glu	Tyr	Glu	Phe	Leu	Thr	Pro	Schilling & Overall, 2008
rho GDP-dissociation inhibitor 1	P52565	1-33	peptide-Glu22+His-peptide	N	MS	Glu	Glu	Asp	Glu	His	Ser	Val	Asn	Schilling & Overall, 2008
rho GDP-dissociation inhibitor 1	P52565	1-33	peptide-Glu9+Gln-peptide	N	MS	Pro	Thr	Ala	Glu	Gln	Leu	Ala	Gln	Schilling & Overall, 2008
Rho GDP-dissociation inhibitor 1	P52565		peptide-Glu37+Ile-peptide	N	MS	Ser	Ile	Gln	Glu	Ile	Gln	Glu	Leu	Vidmar et al., 2017
Rho GDP-dissociation inhibitor 1	P52565		peptide-Glu155+Tyr-peptide	N	MS	Arg	Ala	Glu	Glu	Tyr	Glu	Phe	Leu	Vidmar et al., 2017
Rho GDP-dissociation inhibitor 1	P52565		peptide-Glu19+Glu-peptide	N	MS	Ala	Glu	Asn	Glu	Glu	Asp	Glu	His	Vidmar et al., 2017
Rho GDP-dissociation inhibitor 1	P52565		peptide-Glu109+Tyr-peptide	N	MS	Glu	Gly	Val	Glu	Tyr	Arg	Ile	Lys	Vidmar et al., 2017
Rho GDP-dissociation inhibitor 1	P52565		peptide-Glu95+Ser-peptide	N	MS	Gly	Asp	Leu	Glu	Ser	Phe	Lys	Lys	Vidmar et al., 2017
Rho GDP-dissociation inhibitor 1	P52565		peptide-Glu193+Trp-peptide	N	MS	Leu	Ser	Trp	Glu	Trp	Asn	Leu	Thr	Vidmar et al., 2017
rho GDP-dissociation inhibitor 2	P52566	150-164	EEYE+FLTPVEEAPK	N	MS	Glu	Glu	Tyr	Glu	Phe	Leu	Thr	Pro	Schilling & Overall, 2008
Rho GDP-dissociation inhibitor 2	P52566		peptide-Glu34+Leu-peptide	N	MS	Ser	Leu	Lys	Glu	Leu	Gln	Glu	Met	Vidmar et al., 2017
Rho-associated protein kinase 2	O75116		peptide-Glu1027+Arg-peptide	N	MS	Leu	Leu	Thr	Glu	Arg	Thr	Leu	Lys	Vidmar et al., 2017
Rho-associated protein kinase 2	O75116		peptide-Glu743+Arg-peptide	N	MS	Leu	Leu	Glu	Glu	Arg	Thr	Leu	Lys	Vidmar et al., 2017
Rho-related GTP-binding protein RhoC	P08134		peptide-Glu40+Asn-peptide	N	MS	Thr	Val	Phe	Glu	Asn	Tyr	Ile	Ala	Vidmar et al., 2017
Rho-related GTP-binding protein RhoC	P08134		peptide-Glu143+Gly-peptide	N	MS	Arg	Ser	Glu	Glu	Gly	Arg	Asp	Met	Vidmar et al., 2017
Rho-related GTP-binding protein RhoC	P08134		peptide-Glu102+Val-peptide	N	MS	Trp	Thr	Pro	Glu	Val	Lys	His	Phe	Vidmar et al., 2017
Rho-related GTP-binding protein RhoC	P08134		peptide-Glu158+Cys-peptide	N	MS	Gly	Tyr	Leu	Glu	Cys	Ser	Ala	Lys	Vidmar et al., 2017
Rho-related GTP-binding protein RhoC	P08134		peptide-Glu130+Leu-peptide	N	MS	Thr	Arg	Arg	Glu	Leu	Ala	Lys	Met	Vidmar et al., 2017
Rho-related GTP-binding protein RhoG	P84095		peptide-Glu131+Gln-peptide	N	MS	Arg	Leu	Lys	Glu	Gln	Gly	Gln	Ala	Vidmar et al., 2017
ribonuclease inhibitor	P13489	19-34	WAE+LLPLLQQCQVVR	N	MS	-	Trp	Ala	Glu	Leu	Leu	Pro	Leu	Schilling & Overall, 2008
ribonuclease inhibitor	P13489	2-461	peptide-Glu231+Leu-peptide	N	MS	Ser	Leu	Arg	Glu	Leu	Ala	Leu	Gly	Schilling & Overall, 2008
ribonuclease inhibitor	P13489	2-461	peptide-Glu135+Gly-peptide	N	MS	Leu	Leu	Cys	Glu	Gly	Leu	Leu	Asp	Schilling & Overall, 2008
Ribonuclease inhibitor	P13489		peptide-Glu150+Tyr-peptide	N	MS	Leu	Gln	Leu	Glu	Tyr	Cys	Ser	Leu	Vidmar et al., 2017
Ribonuclease inhibitor	P13489		peptide-Glu207+Ser-peptide	N	MS	Leu	Lys	Leu	Glu	Ser	Cys	Gly	Val	Vidmar et al., 2017
Ribonuclease inhibitor	P13489		peptide-Glu451+Lys-peptide	N	MS	Gln	Ala	Leu	Glu	Lys	Asp	Lys	Pro	Vidmar et al., 2017
Ribonuclease inhibitor	P13489		peptide-Glu184+Ala-peptide	N	MS	Asp	Ile	Asn	Glu	Ala	Gly	Val	Arg	Vidmar et al., 2017
Ribonuclease inhibitor	P13489		peptide-Glu42+Ala-peptide	N	MS	Gly	Leu	Thr	Glu	Ala	Arg	Cys	Lys	Vidmar et al., 2017
ribonuclease/angiogenin inhibitor	Q8IZK8	19-34	WAE+LLPLLQQCQVVR	N	MS	-	Trp	Ala	Glu	Leu	Leu	Pro	Leu	Schilling & Overall, 2008
ribonuclease/angiogenin inhibitor	Q8IZK8	1-461	peptide-Glu231+Leu-peptide	N	MS	Ser	Leu	Arg	Glu	Leu	Ala	Leu	Gly	Schilling & Overall, 2008
ribonuclease/angiogenin inhibitor	Q8IZK8	1-461	peptide-Glu135+Gly-peptide	N	MS	Leu	Leu	Cys	Glu	Gly	Leu	Leu	Asp	Schilling & Overall, 2008
ribonucleoside-diphosphate reductase large subunit	P23921	628-643	VLSGE+FQIVNPHLLK	N	MS	Leu	Ser	Gly	Glu	Phe	Gln	Ile	Val	Schilling & Overall, 2008
ribonucleoside-diphosphate reductase subunit M2	P31350	1-389	peptide-Glu31+Asn-peptide	N	MS	Val	Asp	Lys	Glu	Asn	Thr	Pro	Pro	Schilling & Overall, 2008
ribosomal L1 domain-containing protein 1	O76021	1-490	peptide-Glu34+Gln-peptide	N	MS	Leu	Asp	Lys	Glu	Gln	Val	Arg	Lys	Schilling & Overall, 2008
Ribosome maturation protein SBDS	Q9Y3A5		peptide-Glu188+Lys-peptide	N	MS	Lys	Leu	Lys	Glu	Lys	Leu	Lys	Pro	Vidmar et al., 2017
Ribosome maturation protein SBDS	Q9Y3A5		peptide-Glu207+Ile-peptide	N	MS	Gln	Gln	Leu	Glu	Ile	Val	Cys	Leu	Vidmar et al., 2017
Ribosome maturation protein SBDS	Q9Y3A5		peptide-Glu235+Val-peptide	N	MS	Gly	Ser	Leu	Glu	Val	Leu	Asn	Leu	Vidmar et al., 2017
Ribosome-binding protein 1	Q9P2E9		peptide-Glu303+Gly-peptide	N	MS	Lys	Lys	Val	Glu	Gly	Ala	Gln	Asn	Vidmar et al., 2017
Ribosome-binding protein 1	Q9P2E9		peptide-Glu890+Leu-peptide	N	MS	Val	Ser	Arg	Glu	Leu	Cys	His	Thr	Vidmar et al., 2017
Ribosome-binding protein 1	Q9P2E9		peptide-Glu541+Gly-peptide	N	MS	Lys	Lys	Gly	Glu	Gly	Ala	Pro	Ile	Vidmar et al., 2017
Ribosome-binding protein 1	Q9P2E9		peptide-Glu171+Thr-peptide	N	MS	Ala	Ile	Leu	Glu	Thr	Ala	Pro	Lys	Vidmar et al., 2017
Ribosome-binding protein 1	Q9P2E9		peptide-Glu712+Gln-peptide	N	MS	Leu	Ala	Thr	Glu	Gln	Glu	Asp	Ala	Vidmar et al., 2017
Ribosome-binding protein 1	Q9P2E9		peptide-Thr245+Pro-peptide	N	MS	Ala	Glu	Gly	Thr	Pro	Asn	Gln	Gly	Vidmar et al., 2017
Ribosome-binding protein 1	Q9P2E9		peptide-Gln1326+Glu-peptide	N	MS	Cys	Arg	Leu	Gln	Glu	Glu	Leu	Glu	Vidmar et al., 2017
Ribosome-binding protein 1	Q9P2E9		peptide-Glu1166+Leu-peptide	N	MS	Ala	Glu	Glu	Glu	Leu	Gln	Lys	Ser	Vidmar et al., 2017
Ribosome-binding protein 1	Q9P2E9		peptide-Glu1356+Lys-peptide	N	MS	Leu	Glu	Lys	Glu	Lys	Lys	Leu	Thr	Vidmar et al., 2017
Ribosome-binding protein 1	Q9P2E9		peptide-Glu706+Lys-peptide	N	MS	Glu	Glu	Lys	Glu	Lys	Leu	Leu	Ala	Vidmar et al., 2017
Ribosome-binding protein 1	Q9P2E9		peptide-Glu1091+Lys-peptide	N	MS	Asp	Leu	Lys	Glu	Lys	Gly	Pro	Thr	Vidmar et al., 2017
Ribosome-binding protein 1	Q9P2E9		peptide-Asp683+Thr-peptide	N	MS	Ile	Ile	Gln	Asp	Thr	Trp	His	Lys	Vidmar et al., 2017
Ribosome-binding protein 1	Q9P2E9		peptide-Glu213+Gly-peptide	N	MS	Lys	Lys	Ala	Glu	Gly	Ala	Pro	Asn	Vidmar et al., 2017
Ribosome-binding protein 1	Q9P2E9		peptide-Glu313+Gly-peptide	N	MS	Lys	Lys	Ala	Glu	Gly	Ala	Gln	Asn	Vidmar et al., 2017
Ribosome-binding protein 1	Q9P2E9		peptide-Glu991+Leu-peptide	N	MS	Arg	Leu	Lys	Glu	Leu	Glu	Ser	Gln	Vidmar et al., 2017
Ribosome-binding protein 1	Q9P2E9		peptide-Thr235+Pro-peptide	N	MS	Thr	Glu	Gly	Thr	Pro	Asn	Gln	Gly	Vidmar et al., 2017
Ribosome-binding protein 1	Q9P2E9		peptide-Glu203+Gly-peptide	N	MS	Lys	Lys	Ala	Glu	Gly	Thr	Gln	Asn	Vidmar et al., 2017
Ribosome-binding protein 1	Q9P2E9		peptide-Glu1011+Gln-peptide	N	MS	Glu	Ala	Val	Glu	Gln	Gln	Lys	Val	Vidmar et al., 2017
Ribosome-binding protein 1	Q9P2E9		peptide-Glu1317+Ala-peptide	N	MS	Glu	Phe	Glu	Glu	Ala	Gln	Thr	Ser	Vidmar et al., 2017
Ribosome-binding protein 1	Q9P2E9		peptide-Glu772+Val-peptide	N	MS	His	Val	Lys	Glu	Val	Gln	Gln	Leu	Vidmar et al., 2017
Ribosome-binding protein 1	Q9P2E9		peptide-Glu1139+Gly-peptide	N	MS	Ala	Glu	Thr	Glu	Gly	Met	Leu	Arg	Vidmar et al., 2017
Ribosome-binding protein 1	Q9P2E9		peptide-Glu493+Gly-peptide	N	MS	Lys	Lys	Ala	Glu	Gly	Ala	Gln	Asn	Vidmar et al., 2017
Ribosome-binding protein 1	Q9P2E9		peptide-Glu561+Gly-peptide	N	MS	Thr	Lys	Val	Glu	Gly	Ile	Thr	Asn	Vidmar et al., 2017
Ribosome-binding protein 1	Q9P2E9		peptide-Glu571+Gly-peptide	N	MS	Lys	Lys	Ala	Glu	Gly	Ser	Pro	Ser	Vidmar et al., 2017
Ribosome-binding protein 1	Q9P2E9		peptide-Glu878+Ala-peptide	N	MS	Glu	Ser	Glu	Glu	Ala	Leu	Gln	Lys	Vidmar et al., 2017
Ribosome-binding protein 1	Q9P2E9		peptide-Glu1127+Cys-peptide	N	MS	Leu	Gln	Ala	Glu	Cys	Asp	Gln	Tyr	Vidmar et al., 2017
Ribosome-binding protein 1	Q9P2E9		peptide-Glu1051+Ser-peptide	N	MS	Ala	Lys	Glu	Glu	Ser	Glu	Lys	Gln	Vidmar et al., 2017
Ribosome-binding protein 1	Q9P2E9		peptide-Glu1384+Lys-peptide	N	MS	Leu	Ala	Arg	Glu	Lys	Asp	Thr	Val	Vidmar et al., 2017
Ribosome-binding protein 1	Q9P2E9		peptide-Glu233+Gly-peptide	N	MS	Lys	Lys	Thr	Glu	Gly	Thr	Pro	Asn	Vidmar et al., 2017
Ribosome-binding protein 1	Q9P2E9		peptide-Glu1008+Ala-peptide	N	MS	Glu	Leu	Arg	Glu	Ala	Val	Glu	Gln	Vidmar et al., 2017
Ribosome-binding protein 1	Q9P2E9		peptide-Glu323+Gly-peptide	N	MS	Lys	Lys	Gly	Glu	Gly	Ala	Gln	Asn	Vidmar et al., 2017
Ribosome-binding protein 1	Q9P2E9		peptide-Glu1232+Ser-peptide	N	MS	Leu	Leu	Leu	Glu	Ser	Gln	Ser	Gln	Vidmar et al., 2017
Ribosome-binding protein 1	Q9P2E9		peptide-Glu1328+Leu-peptide	N	MS	Leu	Gln	Glu	Glu	Leu	Glu	Lys	Leu	Vidmar et al., 2017
Ribosome-binding protein 1	Q9P2E9		peptide-Glu581+Gly-peptide	N	MS	Lys	Lys	Ala	Glu	Gly	Ser	Pro	Asn	Vidmar et al., 2017
Ribosome-binding protein 1	Q9P2E9		peptide-Glu714+Asp-peptide	N	MS	Thr	Glu	Gln	Glu	Asp	Ala	Ala	Val	Vidmar et al., 2017
Ribosome-binding protein 1	Q9P2E9		peptide-Glu503+Gly-peptide	N	MS	Lys	Lys	Ala	Glu	Gly	Ala	Gln	Asn	Vidmar et al., 2017
Ribosome-binding protein 1	Q9P2E9		peptide-Glu1179+Ile-peptide	N	MS	His	Leu	Glu	Glu	Ile	Val	Glu	Lys	Vidmar et al., 2017
Ribosome-binding protein 1	Q9P2E9		peptide-Glu1354+Lys-peptide	N	MS	Glu	Arg	Leu	Glu	Lys	Glu	Lys	Lys	Vidmar et al., 2017
Ribosome-binding protein 1	Q9P2E9		peptide-Glu863+Lys-peptide	N	MS	Ala	Ala	Phe	Glu	Lys	Gln	Val	Leu	Vidmar et al., 2017
Ribosome-binding protein 1	Q9P2E9		peptide-Glu293+Gly-peptide	N	MS	Arg	Lys	Ala	Glu	Gly	Ala	Gln	Asn	Vidmar et al., 2017
Ribosome-binding protein 1	Q9P2E9		peptide-Glu1222+Val-peptide	N	MS	Tyr	Ala	Lys	Glu	Val	Ala	Gly	Leu	Vidmar et al., 2017
Ribosome-binding protein 1	Q9P2E9		peptide-Glu1330+Lys-peptide	N	MS	Glu	Glu	Leu	Glu	Lys	Leu	Arg	Thr	Vidmar et al., 2017
Ribosome-binding protein 1	Q9P2E9		peptide-Gly186+Ala-peptide	N	MS	Pro	Pro	Val	Gly	Ala	Lys	Gly	Asn	Vidmar et al., 2017
Ribosome-binding protein 1	Q9P2E9		peptide-Glu965+Ala-peptide	N	MS	Ala	Leu	Leu	Glu	Ala	Gly	Gln	Ala	Vidmar et al., 2017
Ribosome-binding protein 1	Q9P2E9		peptide-Glu1153+Gln-peptide	N	MS	Glu	Glu	Glu	Glu	Gln	Val	Trp	Arg	Vidmar et al., 2017
Ribosome-binding protein 1	Q9P2E9		peptide-Glu1302+Asp-peptide	N	MS	Ala	Ile	Leu	Glu	Asp	Glu	Gln	Thr	Vidmar et al., 2017
Ribosome-binding protein 1	Q9P2E9		peptide-Glu981+Ala-peptide	N	MS	Ser	Gln	Ala	Glu	Ala	Asp	Gln	Gln	Vidmar et al., 2017
Ribosome-binding protein 1	Q9P2E9		peptide-Glu917+Leu-peptide	N	MS	Gln	Met	Ala	Glu	Leu	His	Ser	Lys	Vidmar et al., 2017
Ribosome-binding protein 1	Q9P2E9		peptide-Glu1316+Glu-peptide	N	MS	Ala	Glu	Phe	Glu	Glu	Ala	Gln	Thr	Vidmar et al., 2017
Ribosome-binding protein 1	Q9P2E9		peptide-Glu741+Ala-peptide	N	MS	Ala	Ala	Gly	Glu	Ala	Lys	Val	Lys	Vidmar et al., 2017
Ribosome-binding protein 1	Q9P2E9		peptide-Glu801+Asn-peptide	N	MS	Leu	Gln	Gln	Glu	Asn	Ser	Ile	Leu	Vidmar et al., 2017
Ribosome-binding protein 1	Q9P2E9		peptide-Glu1250+Leu-peptide	N	MS	Gln	Ser	Asp	Glu	Leu	Ala	Leu	Val	Vidmar et al., 2017
Ribosome-binding protein 1	Q9P2E9		peptide-Glu263+Gly-peptide	N	MS	Lys	Lys	Ala	Glu	Gly	Ala	Gln	Asn	Vidmar et al., 2017
Ribosome-binding protein 1	Q9P2E9		peptide-Glu1314+Phe-peptide	N	MS	Leu	Thr	Ala	Glu	Phe	Glu	Glu	Ala	Vidmar et al., 2017
Ribosome-binding protein 1	Q9P2E9		peptide-Glu788+Asn-peptide	N	MS	Glu	Gln	Leu	Glu	Asn	Gly	Pro	Asn	Vidmar et al., 2017
Ribulose-phosphate 3-epimerase	Q96AT9		peptide-Glu96+Ala-peptide	N	MS	Phe	His	Leu	Glu	Ala	Thr	Glu	Asn	Vidmar et al., 2017
rNA polymerase sigma factor rpoS	P13445	1-330	peptide-Glu197+Ile-peptide	N	MS	Ser	Ala	Glu	Glu	Ile	Ala	Glu	Gln	Timmer et al., 2009
RNA polymerase-associated protein LEO1	Q8WVC0		peptide-Glu583+Ser-peptide	N	MS	Glu	Gly	Glu	Glu	Ser	Ile	Ser	Leu	Vidmar et al., 2017
RNA-binding protein 12	Q9NTZ6	1-932	peptide-Glu565+Gly-peptide	N	MS	Gln	Phe	Leu	Glu	Gly	Ile	Pro	Val	Schilling & Overall, 2008
RNA-binding protein 12	Q9NTZ6		peptide-Glu571+Asn-peptide	N	MS	Pro	Val	Asp	Glu	Asn	Ala	Val	His	Vidmar et al., 2017
RNA-binding protein 25	P49756	1-843	peptide-Glu95+Lys-peptide	N	MS	Gln	Ile	Gly	Glu	Lys	Lys	Leu	Leu	Schilling & Overall, 2008
RNA-binding protein 3	P98179		peptide-Glu42+Thr-peptide	N	MS	Lys	Asp	Arg	Glu	Thr	Gln	Arg	Ser	Vidmar et al., 2017
RNA-binding protein 3	P98179		peptide-Glu23+Asp-peptide	N	MS	Gln	Ala	Leu	Glu	Asp	His	Phe	Ser	Vidmar et al., 2017
RNA-binding protein 3	P98179		peptide-Glu5+Gly-peptide	N	MS	Ser	Ser	Glu	Glu	Gly	Lys	Leu	Phe	Vidmar et al., 2017
RNA-binding protein EWS	Q01844		peptide-Glu539+Cys-peptide	N	MS	Trp	Arg	Thr	Glu	Cys	Asn	Gln	Cys	Vidmar et al., 2017
RNA-binding protein EWS isoform 5	Q01844-5	340-387	peptide-Asp375+Ser-peptide	N	MS	Gly	Leu	Asn	Asp	Ser	Val	Thr	Leu	Schilling & Overall, 2008
RNA-binding protein EWS isoform 5	Q01844-5	409-429	E+TGKPKGDATVSYEDPPTAK	N	MS	-	-	-	Glu	Thr	Gly	Lys	Pro	Schilling & Overall, 2008
RPS27A protein	Q49A90	11-27	TITLE+VEPSDTIENVK	N	MS	Ile	Thr	Leu	Glu	Val	Glu	Pro	Ser	Schilling & Overall, 2008
RPS27A protein	Q49A90	1-95	peptide-Glu51+Asp-peptide	N	MS	Lys	Gln	Leu	Glu	Asp	Gly	Arg	Thr	Schilling & Overall, 2008
RuvB-like 1	Q9Y265		peptide-Glu435+Leu-peptide	N	MS	Glu	Ile	Ser	Glu	Leu	Phe	Tyr	Asp	Vidmar et al., 2017
S-adenosylhomocysteine hydrolase-like protein 1	O43865		peptide-Glu26+Lys-peptide	N	MS	Glu	Asp	Ala	Glu	Lys	Tyr	Ser	Phe	Vidmar et al., 2017
S-adenosylmethionine synthase isoform type-2	P31153		peptide-Glu70+Ile-peptide	N	MS	Leu	Ala	Gly	Glu	Ile	Thr	Ser	Arg	Vidmar et al., 2017
S-adenosylmethionine synthase isoform type-2	P31153		peptide-Glu347+Ile-peptide	N	MS	Glu	Leu	Leu	Glu	Ile	Val	Lys	Lys	Vidmar et al., 2017
S-adenosylmethionine synthetase isoform type-2	P31153	1-395	peptide-Glu85+Ala-peptide	N	MS	Val	Val	Arg	Glu	Ala	Val	Lys	His	Schilling & Overall, 2008
S-formylglutathione hydrolase	P10768	119-142	peptide-Glu126+Glu-peptide	N	MS	Tyr	Val	Thr	Glu	Glu	Leu	Pro	Gln	Schilling & Overall, 2008
S-phase kinase-associated protein 1	P63208		peptide-Glu91+Phe-peptide	N	MS	Trp	Asp	Gln	Glu	Phe	Leu	Lys	Val	Vidmar et al., 2017
SAP domain-containing ribonucleoprotein	P82979		peptide-Glu26+Thr-peptide	N	MS	Arg	Gly	Leu	Glu	Thr	Lys	Gly	Ile	Vidmar et al., 2017
SAP domain-containing ribonucleoprotein	P82979		peptide-Glu179+Arg-peptide	N	MS	Lys	Arg	Lys	Glu	Arg	Phe	Gly	Ile	Vidmar et al., 2017
SAP domain-containing ribonucleoprotein	P82979		peptide-Glu87+Lys-peptide	N	MS	Val	Ala	Ala	Glu	Lys	Lys	Val	Val	Vidmar et al., 2017
Sarcoplasmic/endoplasmic reticulum calcium ATPase 2	P16615		peptide-Glu11+Val-peptide	N	MS	Thr	Val	Glu	Glu	Val	Leu	Gly	His	Vidmar et al., 2017
SCAMP1 protein	Q6FG23	1-338	peptide-Glu79+His-peptide	N	MS	Ile	Ala	Lys	Glu	His	Ala	Leu	Ala	Schilling & Overall, 2008
secernin 2	Q96FV2	1-425	peptide-Glu420+Ser-peptide	N	MS	Val	Lys	Arg	Glu	Ser	Gln	Ala	Tyr	Schilling & Overall, 2008
SELE	P16581	22-610	peptide-Glu119+Lys-peptide	N		Ile	Lys	Arg	Glu	Lys	Asp	Val	Gly	Anostario & Huang, 1995	19038
SELE	P16581	22-610	peptide-Glu113+Ile-peptide	N		Asp	Cys	Val	Glu	Ile	Tyr	Ile	Lys	Anostario & Huang, 1995	19039
SELE	P16581	22-610	peptide-Glu128+Arg-peptide	N		Trp	Asn	Asp	Glu	Arg	Cys	Ser	Lys	Anostario & Huang, 1995	19040
Sepiapterin reductase	P35270		peptide-Glu211+Thr-peptide	N	MS	Leu	Ala	Arg	Glu	Thr	Ser	Val	Asp	Vidmar et al., 2017
SEPT9 protein	Q1WWK5	1-341	peptide-Glu194+Ala-peptide	N	MS	Pro	Val	Ala	Glu	Ala	Thr	Pro	Arg	Schilling & Overall, 2008
septin-2	Q15019	1-361	peptide-Glu289+Val-peptide	N	MS	Asp	Leu	Gln	Glu	Val	Thr	Gln	Asp	Schilling & Overall, 2008
Sequestosome-1	Q13501		peptide-Glu360+Ser-peptide	N	MS	Gln	Met	Pro	Glu	Ser	Glu	Gly	Pro	Vidmar et al., 2017
Serine hydroxymethyltransferase, mitochondrial	P34897		peptide-Glu114+Ile-peptide	N	MS	Val	Val	Asp	Glu	Ile	Glu	Leu	Leu	Vidmar et al., 2017
Serine hydroxymethyltransferase, mitochondrial	P34897		peptide-Glu86+Ala-peptide	N	MS	Ala	Ala	Leu	Glu	Ala	Leu	Gly	Ser	Vidmar et al., 2017
Serine hydroxymethyltransferase, mitochondrial	P34897		peptide-Glu77+Asn-peptide	N	MS	Ile	Ala	Ser	Glu	Asn	Phe	Cys	Ser	Vidmar et al., 2017
Serine hydroxymethyltransferase, mitochondrial	P34897		peptide-Glu477+Thr-peptide	N	MS	Lys	Asp	Ser	Glu	Thr	Ser	Gln	Arg	Vidmar et al., 2017
Serine--tRNA ligase, cytoplasmic	P49591		peptide-Glu489+Gly-peptide	N	MS	Lys	Gln	His	Glu	Gly	Ser	Lys	Lys	Vidmar et al., 2017
Serine--tRNA ligase, cytoplasmic	P49591		peptide-Glu447+Lys-peptide	N	MS	Tyr	Gln	Thr	Glu	Lys	Gly	Ile	Thr	Vidmar et al., 2017
Serine--tRNA ligase, cytoplasmic	P49591		peptide-Asp6+Leu-peptide	N	MS	Leu	Asp	Leu	Asp	Leu	Phe	Arg	Val	Vidmar et al., 2017
Serine--tRNA ligase, cytoplasmic	P49591		peptide-Glu125+Ala-peptide	N	MS	Ile	Lys	Leu	Glu	Ala	Glu	Arg	Phe	Vidmar et al., 2017
Serine-threonine kinase receptor-associated protein	Q9Y3F4		peptide-Glu332+Ile-peptide	N	MS	Glu	Leu	Glu	Glu	Ile	Ala	Ser	Glu	Vidmar et al., 2017
Serine/arginine-rich splicing factor 1	Q07955		peptide-Asp176+Asn-peptide	N	MS	Arg	Lys	Leu	Asp	Asn	Thr	Lys	Phe	Vidmar et al., 2017
Serine/arginine-rich splicing factor 1	Q07955		peptide-Glu166+Asp-peptide	N	MS	Val	Arg	Lys	Glu	Asp	Met	Thr	Tyr	Vidmar et al., 2017
Serine/arginine-rich splicing factor 1	Q07955		peptide-Glu143+Ala-peptide	N	MS	His	Met	Arg	Glu	Ala	Gly	Asp	Val	Vidmar et al., 2017
Serine/arginine-rich splicing factor 2	Q01130		peptide-Glu35+Lys-peptide	N	MS	Arg	Val	Phe	Glu	Lys	Tyr	Gly	Arg	Vidmar et al., 2017
Serine/arginine-rich splicing factor 2	Q01130		peptide-Glu53+Ser-peptide	N	MS	Tyr	Thr	Lys	Glu	Ser	Arg	Gly	Phe	Vidmar et al., 2017
Serine/arginine-rich splicing factor 2	Q01130		peptide-Gly93+Arg-peptide	N	MS	Ala	Arg	Tyr	Gly	Arg	Pro	Pro	Asp	Vidmar et al., 2017
Serine/arginine-rich splicing factor 2	Q01130		peptide-Glu84+Leu-peptide	N	MS	Asp	Gly	Arg	Glu	Leu	Arg	Val	Gln	Vidmar et al., 2017
Serine/arginine-rich splicing factor 3	P84103		peptide-Glu52+Phe-peptide	N	MS	Ala	Phe	Val	Glu	Phe	Glu	Asp	Pro	Vidmar et al., 2017
Serine/arginine-rich splicing factor 3	P84103		peptide-Glu65+Leu-peptide	N	MS	Ala	Val	Arg	Glu	Leu	Asp	Gly	Arg	Vidmar et al., 2017
Serine/arginine-rich splicing factor 4	Q08170		peptide-Glu146+Phe-peptide	N	MS	Gly	Val	Ile	Glu	Phe	Val	Ser	Tyr	Vidmar et al., 2017
Serine/arginine-rich splicing factor 4	Q08170		peptide-Glu19+Arg-peptide	N	MS	Arg	Asp	Val	Glu	Arg	Phe	Phe	Lys	Vidmar et al., 2017
Serine/arginine-rich splicing factor 5	Q13243		peptide-Glu113+Asn-peptide	N	MS	Leu	Ile	Val	Glu	Asn	Leu	Ser	Ser	Vidmar et al., 2017
Serine/arginine-rich splicing factor 5	Q13243		peptide-Glu150+Phe-peptide	N	MS	Gly	Val	Val	Glu	Phe	Ala	Ser	Tyr	Vidmar et al., 2017
Serine/arginine-rich splicing factor 5	Q13243		peptide-Ser90+Ser-peptide	N	MS	Asp	Arg	Phe	Ser	Ser	Arg	Arg	Pro	Vidmar et al., 2017
Serine/arginine-rich splicing factor 6	Q13247		peptide-Glu152+Phe-peptide	N	MS	Gly	Val	Ile	Glu	Phe	Arg	Ser	Tyr	Vidmar et al., 2017
Serine/arginine-rich splicing factor 7	Q16629		peptide-Glu53+Phe-peptide	N	MS	Ala	Phe	Val	Glu	Phe	Glu	Asp	Pro	Vidmar et al., 2017
Serine/arginine-rich splicing factor 9	Q13242		peptide-Glu31+Asp-peptide	N	MS	Lys	Asp	Leu	Glu	Asp	Leu	Phe	Tyr	Vidmar et al., 2017
Serine/arginine-rich splicing factor 9	Q13242		peptide-Glu159+Tyr-peptide	N	MS	Glu	Asp	Met	Glu	Tyr	Ala	Leu	Arg	Vidmar et al., 2017
Serine/threonine-protein kinase OSR1	O95747		peptide-Glu349+Gly-peptide	N	MS	Glu	Ser	Glu	Glu	Gly	Lys	Ala	Ala	Vidmar et al., 2017
Serine/threonine-protein kinase OSR1	O95747		peptide-Glu21+Val-peptide	N	MS	Glu	Leu	Gln	Glu	Val	Ile	Gly	Ser	Vidmar et al., 2017
Serine/threonine-protein kinase OSR1	O95747		peptide-Glu302+Lys-peptide	N	MS	Phe	Leu	Gln	Glu	Lys	Thr	Leu	Gln	Vidmar et al., 2017
serine/threonine-protein kinase PAK 2	Q13177	1-524	peptide-Glu115+Gln-peptide	N	MS	Thr	Lys	Leu	Glu	Gln	Lys	Lys	Asn	Schilling & Overall, 2008
serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	P30153	202-221	SE+IIPMFSNLASDEQDSVR	N	MS	-	-	Ser	Glu	Ile	Ile	Pro	Met	Schilling & Overall, 2008
serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	P30153	2-589	peptide-Glu410+Leu-peptide	N	MS	Ala	Ile	Val	Glu	Leu	Ala	Glu	Asp	Schilling & Overall, 2008
Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	P30153		peptide-Glu241+Ala-peptide	N	MS	Glu	Asp	Leu	Glu	Ala	Leu	Val	Met	Vidmar et al., 2017
Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	P30153		peptide-Glu295+Ala-peptide	N	MS	Lys	Asp	Cys	Glu	Ala	Glu	Val	Arg	Vidmar et al., 2017
Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	P30153		peptide-Glu165+Leu-peptide	N	MS	Val	Lys	Ala	Glu	Leu	Arg	Gln	Tyr	Vidmar et al., 2017
Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	P30153		peptide-Glu308+Phe-peptide	N	MS	Lys	Val	Lys	Glu	Phe	Cys	Glu	Asn	Vidmar et al., 2017
serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform variant 2	B0YJ69	1-601	peptide-Glu422+Leu-peptide	N	MS	Ala	Ile	Val	Glu	Leu	Ala	Glu	Asp	Schilling & Overall, 2008
Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform	P67775		peptide-Glu47+Val-peptide	N	MS	Asn	Val	Gln	Glu	Val	Arg	Cys	Pro	Vidmar et al., 2017
Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform	P67775		peptide-Glu277+Leu-peptide	N	MS	Ala	Ile	Met	Glu	Leu	Asp	Asp	Thr	Vidmar et al., 2017
Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform	P67775		peptide-Glu25+Ser-peptide	N	MS	Gln	Leu	Ser	Glu	Ser	Gln	Val	Lys	Vidmar et al., 2017
Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform	Q08209		peptide-Glu33+Val-peptide	N	MS	Thr	Ala	Lys	Glu	Val	Phe	Asp	Asn	Vidmar et al., 2017
Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform	Q08209		peptide-Glu472+Ala-peptide	N	MS	Ser	Phe	Glu	Glu	Ala	Lys	Gly	Leu	Vidmar et al., 2017
Serine/threonine-protein phosphatase 4 catalytic subunit	P60510		peptide-Glu24+Val-peptide	N	MS	Lys	Glu	Ser	Glu	Val	Lys	Ala	Leu	Vidmar et al., 2017
Serine/threonine-protein phosphatase 4 regulatory subunit 1	Q8TF05		peptide-Glu451+Leu-peptide	N	MS	Leu	Asp	Gln	Glu	Leu	Tyr	Asn	Ser	Vidmar et al., 2017
Serine/threonine-protein phosphatase 4 regulatory subunit 1	Q8TF05		peptide-Glu179+Leu-peptide	N	MS	Val	Leu	Ile	Glu	Leu	Thr	Ala	Pro	Vidmar et al., 2017
Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	P62136		peptide-Glu18+Val-peptide	N	MS	Arg	Leu	Leu	Glu	Val	Gln	Gly	Ser	Vidmar et al., 2017
Serine/threonine-protein phosphatase PP1-gamma catalytic subunit	P36873		peptide-Glu18+Val-peptide	N	MS	Arg	Leu	Leu	Glu	Val	Arg	Gly	Ser	Vidmar et al., 2017
Serpin H1	P50454		peptide-Glu157+His-peptide	N	MS	Tyr	Asn	Cys	Glu	His	Ser	Lys	Ile	Vidmar et al., 2017
Serrate RNA effector molecule homolog	Q9BXP5		peptide-Glu746+Val-peptide	N	MS	Val	Lys	Lys	Glu	Val	Ala	Phe	Phe	Vidmar et al., 2017
Serrate RNA effector molecule homolog	Q9BXP5		peptide-Glu863+Tyr-peptide	N	MS	Ala	Ile	Val	Glu	Tyr	Arg	Asp	Leu	Vidmar et al., 2017
Serum albumin	P02768	25-609	peptide-Glu251+Phe-peptide	N	MS	Pro	Lys	Ala	Glu	Phe	Ala	Glu	Val	Schilling & Overall, 2008
serum albumin	Q56G89	1-609	peptide-Glu251+Phe-peptide	N	MS	Pro	Lys	Ala	Glu	Phe	Ala	Glu	Val	Schilling & Overall, 2008
seryl-tRNA synthetase, cytoplasmic	P49591	71-99	peptide-Glu82+Asn-peptide	N	MS	Ser	Val	Pro	Glu	Asn	Val	Leu	Ser	Schilling & Overall, 2008
SFRS2 protein	Q6NXQ0	1-24	peptide-Glu11+Gly-peptide	N	MS	Pro	Asp	Val	Glu	Gly	Met	Thr	Ser	Schilling & Overall, 2008
SH3 domain-binding glutamic acid-rich-like protein	O75368		peptide-Glu72+Ser-peptide	N	MS	Ile	Phe	Asn	Glu	Ser	Gln	Tyr	Arg	Vidmar et al., 2017
SH3 domain-binding glutamic acid-rich-like protein	O75368		peptide-Glu55+Asn-peptide	N	MS	Asn	Val	Pro	Glu	Asn	Ser	Arg	Pro	Vidmar et al., 2017
SH3 domain-binding glutamic acid-rich-like protein	O75368		peptide-Glu28+Ala-peptide	N	MS	Gly	Phe	Leu	Glu	Ala	Asn	Lys	Ile	Vidmar et al., 2017
SH3 domain-binding glutamic acid-rich-like protein 3	Q9H299	1-93	peptide-Glu16+Ile-peptide	N	MS	Gly	Ser	Arg	Glu	Ile	Lys	Ser	Gln	Schilling & Overall, 2008
Shootin-1	A0MZ66		peptide-Glu527+Ala-peptide	N	MS	Lys	Thr	Leu	Glu	Ala	Glu	Phe	Asn	Vidmar et al., 2017
short/branched chain specific acyl-CoA dehydrogenase, mitochondrial precursor	P45954	269-284	VPE+ANILGQIGHGYK	N	MS	-	Val	Pro	Glu	Ala	Asn	Ile	Leu	Schilling & Overall, 2008
Sialic acid synthase	Q9NR45		peptide-Glu24+Ile-peptide	N	MS	Ile	Ile	Ala	Glu	Ile	Gly	Gln	Asn	Vidmar et al., 2017
Sialic acid synthase	Q9NR45		peptide-Glu202+Tyr-peptide	N	MS	Val	Ile	Ser	Glu	Tyr	Gln	Lys	Leu	Vidmar et al., 2017
Sialic acid synthase	Q9NR45		peptide-Glu348+Leu-peptide	N	MS	Ile	Met	Glu	Glu	Leu	Val	Asp	Asn	Vidmar et al., 2017
Signal recognition particle 14 kDa protein	P37108		peptide-Glu47+Gly-peptide	N	MS	Gly	Thr	Val	Glu	Gly	Phe	Glu	Pro	Vidmar et al., 2017
similar to ribosomal protein L18; 60S ribosomal protein L18	A4D0W6	156-168	LTFD+QLALDSPK	N	MS	Leu	Thr	Phe	Asp	Gln	Leu	Ala	Leu	Schilling & Overall, 2008
similar to ribosomal protein S14	A4D1M5	27-37	E+LGITALHIK	N	MS	-	-	-	Glu	Leu	Gly	Ile	Thr	Schilling & Overall, 2008
Single-stranded DNA-binding protein, mitochondrial	Q04837		peptide-Glu111+Gly-peptide	N	MS	Ile	Tyr	Leu	Glu	Gly	Lys	Ile	Asp	Vidmar et al., 2017
Single-stranded DNA-binding protein, mitochondrial	Q04837		peptide-Glu49+Gly-peptide	N	MS	Arg	Gln	Val	Glu	Gly	Lys	Asn	Pro	Vidmar et al., 2017
single-stranded DNA-binding protein, mitochondrial precursor	Q04837	15-28	HESE+TTTSLVLER	N	MS	His	Glu	Ser	Glu	Thr	Thr	Thr	Ser	Schilling & Overall, 2008
single-stranded DNA-binding protein, mitochondrial precursor	Q04837	66-81	SGDSE+VYQLGDVSQK	N	MS	Gly	Asp	Ser	Glu	Val	Tyr	Gln	Leu	Schilling & Overall, 2008
single-stranded DNA-binding protein, mitochondrial precursor	Q04837	17-148	peptide-Glu146+Lys-peptide	N	MS	Gln	Thr	Lys	Glu	Lys	Glu	-	-	Schilling & Overall, 2008
SLC25A29 protein	A3KMR5	66-82	GSLDCL+AQIYGHEGLR	N	MS	Leu	Asp	Cys	Leu	Ala	Gln	Ile	Tyr	Schilling & Overall, 2008
Small cell adhesion glycoprotein	Q0VAQ4		peptide-Glu83+Ser-peptide	N	MS	Val	Gln	Met	Glu	Ser	Asp	Leu	Ala	Vidmar et al., 2017
Small glutamine-rich tetratricopeptide repeat-containing protein alpha	O43765		peptide-Glu293+Gln-peptide	N	MS	Glu	Leu	Ile	Glu	Gln	Leu	Arg	Ser	Vidmar et al., 2017
Small glutamine-rich tetratricopeptide repeat-containing protein alpha	O43765		peptide-Glu63+Ala-peptide	N	MS	Glu	Ile	Phe	Glu	Ala	Ala	Ala	Thr	Vidmar et al., 2017
small nuclear ribonucleoprotein Sm D1	P62314	71-86	D+SLPLDTLLVDVEPK	N	MS	-	-	-	Asp	Ser	Leu	Pro	Leu	Schilling & Overall, 2008
small nuclear ribonucleoprotein Sm D2	P62316	19-37	EEE+EFNTGPLSVLTQSVK	N	MS	-	Glu	Glu	Glu	Glu	Phe	Asn	Thr	Schilling & Overall, 2008
small nuclear ribonucleoprotein Sm D2	P62316	19-37	EEEE+FNTGPLSVLTQSVK	N	MS	Glu	Glu	Glu	Glu	Phe	Asn	Thr	Gly	Schilling & Overall, 2008
Small nuclear ribonucleoprotein Sm D2	P62316		peptide-Glu10+Met-peptide	N	MS	Pro	Lys	Ser	Glu	Met	Thr	Pro	Glu	Vidmar et al., 2017
Small ubiquitin-related modifier 1	P63165		peptide-Glu67+Gly-peptide	N	MS	Phe	Leu	Phe	Glu	Gly	Gln	Arg	Ile	Vidmar et al., 2017
Small ubiquitin-related modifier 3	P55854		peptide-Glu48+Arg-peptide	N	MS	Ala	Tyr	Cys	Glu	Arg	Gln	Gly	Leu	Vidmar et al., 2017
SNARE-associated protein Snapin	O95295		peptide-Glu31+Phe-peptide	N	MS	Gly	Leu	Leu	Glu	Phe	Leu	Arg	Pro	Vidmar et al., 2017
SNARE-associated protein Snapin	O95295		peptide-Glu53+Leu-peptide	N	MS	Ser	Gln	Val	Glu	Leu	Arg	Glu	Gln	Vidmar et al., 2017
Sodium/potassium-transporting ATPase subunit alpha-1	P05023		peptide-Glu365+Thr-peptide	N	MS	Glu	Ala	Val	Glu	Thr	Leu	Gly	Ser	Vidmar et al., 2017
Sodium/potassium-transporting ATPase subunit alpha-1	P05023		peptide-Glu38+Val-peptide	N	MS	Leu	Lys	Lys	Glu	Val	Ser	Met	Asp	Vidmar et al., 2017
Sodium/potassium-transporting ATPase subunit alpha-1	P05023		peptide-Glu17+Gln-peptide	N	MS	Ala	Val	Ser	Glu	Gln	Gly	Asp	Lys	Vidmar et al., 2017
Sodium/potassium-transporting ATPase subunit alpha-1	P05023		peptide-Val5+Gly-peptide	N	MS	Gly	Lys	Gly	Val	Gly	Arg	Asp	Lys	Vidmar et al., 2017
Sodium/potassium-transporting ATPase subunit alpha-1	P05023		peptide-Glu533+Leu-peptide	N	MS	Leu	Asp	Glu	Glu	Leu	Lys	Asp	Ala	Vidmar et al., 2017
Sodium/potassium-transporting ATPase subunit alpha-1	P05023		peptide-Glu50+Leu-peptide	N	MS	Ser	Leu	Asp	Glu	Leu	His	Arg	Lys	Vidmar et al., 2017
Sodium/potassium-transporting ATPase subunit beta-1	P05026		peptide-Glu124+Asp-peptide	N	MS	Met	Ile	Phe	Glu	Asp	Cys	Gly	Asp	Vidmar et al., 2017
Sodium/potassium-transporting ATPase subunit beta-1	P05026		peptide-Glu99+Ala-peptide	N	MS	Lys	Ser	Tyr	Glu	Ala	Tyr	Val	Leu	Vidmar et al., 2017
soluble pyridine nucleotide transhydrogenase	P27306	2-466	peptide-Glu355+Ile-peptide	N	MS	Thr	Ile	Pro	Glu	Ile	Ser	Ser	Val	Timmer et al., 2009
Solute carrier family 2, facilitated glucose transporter member 1	P11166		peptide-Glu480+Glu-peptide	N	MS	Lys	Thr	Pro	Glu	Glu	Leu	Phe	His	Vidmar et al., 2017
somatotropin-1	P08899	21-120	peptide-Glu45+Ile-peptide	N		Leu	Ala	Ala	Glu	Ile	Tyr	Lys	Glu	Yamaguchi et al., 1987
somatotropin-1	P08899	21-120	peptide-Glu49+Phe-peptide	N		Ile	Tyr	Lys	Glu	Phe	Glu	Arg	Ser	Yamaguchi et al., 1987
somatotropin-1	P08899	21-120	peptide-Glu51+Arg-peptide	N		Lys	Glu	Phe	Glu	Arg	Ser	Ile	Pro	Yamaguchi et al., 1987
somatotropin-1	P08899	21-120	peptide-Glu57+Ala-peptide	N		Ile	Pro	Pro	Glu	Ala	His	Arg	Gln	Yamaguchi et al., 1987
somatotropin-1	P08899	21-120	peptide-Asp74+Ser-peptide	N		Cys	Tyr	Ser	Asp	Ser	Ile	Pro	Thr	Yamaguchi et al., 1987
somatotropin-1	P08899	21-120	peptide-Glu87+Lys-peptide	N		Glu	Thr	Gln	Glu	Lys	Ser	Asp	Gly	Yamaguchi et al., 1987
somatotropin-1	P08899	21-209	peptide-Glu132+Asp-peptide	N		Asp	Lys	Leu	Glu	Asp	Leu	Asn	Lys	Yamaguchi et al., 1987
somatotropin-1	P08899	21-209	peptide-Glu140+Leu-peptide	N		Gly	Ile	Asn	Glu	Leu	Met	Lys	Val	Yamaguchi et al., 1987
somatotropin-1	P08899	21-209	peptide-Asp170+Ala-peptide	N	NT	Leu	Arg	Asn	Asp	Ala	Gly	Leu	Met	Yamaguchi et al., 1987
somatotropin-1	P08899	21-209	peptide-Asp186+Met-peptide	N	NT	Phe	Lys	Lys	Asp	Met	His	Lys	Val	Yamaguchi et al., 1987
sorbitol dehydrogenase	Q00796	2-357	peptide-Glu23+Asn-peptide	N	MS	Leu	Arg	Leu	Glu	Asn	Tyr	Pro	Ile	Schilling & Overall, 2008
Sorting nexin-12	Q9UMY4		peptide-Glu139+Arg-peptide	N	MS	Ala	Gln	Asn	Glu	Arg	Cys	Leu	His	Vidmar et al., 2017
Sorting nexin-12	Q9UMY4		peptide-Glu31+Ile-peptide	N	MS	Asn	Phe	Leu	Glu	Ile	Asp	Ile	Phe	Vidmar et al., 2017
Sorting nexin-12	Q9UMY4		peptide-Glu118+Arg-peptide	N	MS	Phe	Ile	Glu	Glu	Arg	Arg	Gln	Gly	Vidmar et al., 2017
Sorting nexin-3	O60493		peptide-Glu50+Ile-peptide	N	MS	Thr	Thr	Tyr	Glu	Ile	Arg	Val	Lys	Vidmar et al., 2017
Sorting nexin-3	O60493		peptide-Glu30+Ile-peptide	N	MS	Asn	Phe	Leu	Glu	Ile	Asp	Val	Ser	Vidmar et al., 2017
SP-A receptor subunit SP-R210 alphaS	Q5QD01	1-1581	peptide-Glu534+Gly-peptide	N	MS	Ala	Gly	Leu	Glu	Gly	Gly	Ser	Gln	Schilling & Overall, 2008
Spectrin alpha chain, non-erythrocytic 1	Q13813		peptide-Glu2284+His-peptide	N	MS	Lys	Tyr	Thr	Glu	His	Ser	Thr	Val	Vidmar et al., 2017
Spectrin alpha chain, non-erythrocytic 1	Q13813		peptide-Glu698+Gly-peptide	N	MS	Tyr	Glu	Val	Glu	Gly	His	Leu	Ala	Vidmar et al., 2017
Spectrin alpha chain, non-erythrocytic 1	Q13813		peptide-Glu1127+Val-peptide	N	MS	Glu	Gln	Val	Glu	Val	Leu	Gln	Lys	Vidmar et al., 2017
Spectrin alpha chain, non-erythrocytic 1	Q13813		peptide-Glu405+His-peptide	N	MS	Arg	His	Gln	Glu	His	Lys	Gly	Glu	Vidmar et al., 2017
Spectrin alpha chain, non-erythrocytic 1	Q13813		peptide-Glu1854+Leu-peptide	N	MS	His	Trp	Lys	Glu	Leu	Lys	Gln	Leu	Vidmar et al., 2017
Spectrin alpha chain, non-erythrocytic 1	Q13813		peptide-Glu1144+Ser-peptide	N	MS	Lys	Ala	Asn	Glu	Ser	Arg	Leu	Lys	Vidmar et al., 2017
Spectrin alpha chain, non-erythrocytic 1	Q13813		peptide-Glu1234+Val-peptide	N	MS	Ser	Ala	His	Glu	Val	Gln	Arg	Phe	Vidmar et al., 2017
Spectrin alpha chain, non-erythrocytic 1	Q13813		peptide-Glu1183+Thr-peptide	N	MS	Pro	Arg	Asp	Glu	Thr	Asp	Ser	Lys	Vidmar et al., 2017
Spectrin alpha chain, non-erythrocytic 1	Q13813		peptide-Glu1499+Lys-peptide	N	MS	Val	Gln	Glu	Glu	Lys	Ile	Ala	Ala	Vidmar et al., 2017
Spectrin alpha chain, non-erythrocytic 1	Q13813		peptide-Asp1281+Leu-peptide	N	MS	Phe	Glu	Arg	Asp	Leu	Ala	Ala	Leu	Vidmar et al., 2017
Spectrin alpha chain, non-erythrocytic 1	Q13813		peptide-Glu1888+Lys-peptide	N	MS	Trp	Ile	Asn	Glu	Lys	Met	Thr	Leu	Vidmar et al., 2017
Spectrin alpha chain, non-erythrocytic 1	Q13813		peptide-Glu2309+Gln-peptide	N	MS	His	Asn	Leu	Glu	Gln	Gln	Ile	Gln	Vidmar et al., 2017
Spectrin alpha chain, non-erythrocytic 1	Q13813		peptide-Glu2274+Ala-peptide	N	MS	Ala	Met	Glu	Glu	Ala	Leu	Ile	Leu	Vidmar et al., 2017
Spectrin alpha chain, non-erythrocytic 1	Q13813		peptide-Glu1305+Ser-peptide	N	MS	Ser	His	Pro	Glu	Ser	Ala	Glu	Asp	Vidmar et al., 2017
Spectrin alpha chain, non-erythrocytic 1	Q13813		peptide-Glu1465+Ala-peptide	N	MS	Ala	Ala	Arg	Glu	Ala	Phe	Leu	Asn	Vidmar et al., 2017
Spectrin alpha chain, non-erythrocytic 1	Q13813		peptide-Glu933+Ala-peptide	N	MS	Lys	Lys	His	Glu	Ala	Leu	Met	Ser	Vidmar et al., 2017
Spectrin beta chain, non-erythrocytic 1	Q01082		peptide-Glu942+Leu-peptide	N	MS	Gln	Phe	Arg	Glu	Leu	Val	Asp	Arg	Vidmar et al., 2017
Spectrin beta chain, non-erythrocytic 1	Q01082		peptide-Glu1383+Leu-peptide	N	MS	Asn	Lys	Ala	Glu	Leu	Phe	Thr	Gln	Vidmar et al., 2017
Spectrin beta chain, non-erythrocytic 1	Q01082		peptide-Glu2051+Val-peptide	N	MS	Ser	Val	Asp	Glu	Val	Glu	Lys	Leu	Vidmar et al., 2017
Spectrin beta chain, non-erythrocytic 1	Q01082		peptide-Glu1248+Lys-peptide	N	MS	Arg	Ile	Gln	Glu	Lys	Val	Asp	Ser	Vidmar et al., 2017
Spectrin beta chain, non-erythrocytic 1	Q01082		peptide-Glu708+His-peptide	N	MS	Ile	Ala	Glu	Glu	His	Phe	Gly	Ser	Vidmar et al., 2017
Spectrin beta chain, non-erythrocytic 1	Q01082		peptide-Glu1476+Arg-peptide	N	MS	Pro	Leu	Asn	Glu	Arg	Lys	His	Asn	Vidmar et al., 2017
Spectrin beta chain, non-erythrocytic 1	Q01082		peptide-Glu1230+Thr-peptide	N	MS	Ala	Val	Val	Glu	Thr	Gly	Arg	Arg	Vidmar et al., 2017
Spectrin beta chain, non-erythrocytic 1	Q01082		peptide-Glu1189+Tyr-peptide	N	MS	Asn	Asn	Gln	Glu	Tyr	Val	Leu	Ala	Vidmar et al., 2017
Spectrin beta chain, non-erythrocytic 1	Q01082		peptide-Glu1096+Ala-peptide	N	MS	Thr	Leu	Thr	Glu	Ala	Glu	Lys	Leu	Vidmar et al., 2017
Spermidine synthase	P19623		peptide-Glu292+Phe-peptide	N	MS	Val	Leu	Pro	Glu	Phe	Ala	Arg	Lys	Vidmar et al., 2017
Spermidine synthase	P19623		peptide-Glu110+Val-peptide	N	MS	Val	Leu	Arg	Glu	Val	Val	Lys	His	Vidmar et al., 2017
Spermine synthase	P52788		peptide-Asp72+Leu-peptide	N	MS	Val	Leu	Leu	Asp	Leu	Gln	Ser	Tyr	Vidmar et al., 2017
Splicing factor 1	Q15637		peptide-Glu149+Ile-peptide	N	MS	Glu	Tyr	Pro	Glu	Ile	Asn	Phe	Val	Vidmar et al., 2017
Splicing factor 1	Q15637		peptide-Glu98+Phe-peptide	N	MS	Asn	Thr	Arg	Glu	Phe	Arg	Thr	Arg	Vidmar et al., 2017
Splicing factor 1	Q15637		peptide-Glu28+Gln-peptide	N	MS	Asp	Thr	Met	Glu	Gln	Lys	Thr	Val	Vidmar et al., 2017
splicing factor 3 subunit 1	Q15459	144-168	peptide-Glu151+Phe-peptide	N	MS	Pro	Glu	Phe	Glu	Phe	Ile	Ala	Asp	Schilling & Overall, 2008
splicing factor 3 subunit 1	Q15459	1-793	peptide-Glu68+Ala-peptide	N	MS	Pro	Glu	Phe	Glu	Ala	Arg	Ile	Arg	Schilling & Overall, 2008
Splicing factor 3A subunit 1	Q15459		peptide-Glu527+Ala-peptide	N	MS	Glu	Gln	Ile	Glu	Ala	Ile	His	Lys	Vidmar et al., 2017
Splicing factor 3A subunit 1	Q15459		peptide-Glu463+Ser-peptide	N	MS	Leu	Asp	Ile	Glu	Ser	Ser	Leu	Lys	Vidmar et al., 2017
Splicing factor 3A subunit 1	Q15459		peptide-Glu481+Thr-peptide	N	MS	Gly	Val	Glu	Glu	Thr	Ala	Ile	Gly	Vidmar et al., 2017
Splicing factor 3A subunit 1	Q15459		peptide-Glu427+His-peptide	N	MS	Lys	Met	Gln	Glu	His	Met	Arg	Ile	Vidmar et al., 2017
Splicing factor 3A subunit 1	Q15459		peptide-Glu303+Leu-peptide	N	MS	Thr	Pro	Glu	Glu	Leu	Gly	Ala	Arg	Vidmar et al., 2017
Splicing factor 3A subunit 1	Q15459		peptide-Glu440+Gln-peptide	N	MS	Arg	Trp	Leu	Glu	Gln	Arg	Asp	Arg	Vidmar et al., 2017
splicing factor 3A subunit 2	Q15428	31-48	QLALE+TIDINKDPYFMK	N	MS	Leu	Ala	Leu	Glu	Thr	Ile	Asp	Ile	Schilling & Overall, 2008
splicing factor 3A subunit 3	Q12874	291-303	SLE+SLDTSLFAK	N	MS	-	Ser	Leu	Glu	Ser	Leu	Asp	Thr	Schilling & Overall, 2008
Splicing factor 3A subunit 3	Q12874		peptide-Glu52+Val-peptide	N	MS	Arg	Tyr	Met	Glu	Val	Ser	Gly	Asn	Vidmar et al., 2017
Splicing factor 3B subunit 2	Q13435		peptide-Glu145+Arg-peptide	N	MS	Ser	Glu	Glu	Glu	Arg	Leu	Lys	Leu	Vidmar et al., 2017
Splicing factor 3B subunit 2	Q13435		peptide-Glu677+Thr-peptide	N	MS	Pro	Val	Asp	Glu	Thr	Gly	Lys	Pro	Vidmar et al., 2017
Splicing factor 3B subunit 2	Q13435		peptide-Glu377+Ile-peptide	N	MS	Glu	Glu	Pro	Glu	Ile	Tyr	Glu	Pro	Vidmar et al., 2017
Splicing factor 3B subunit 2	Q13435		peptide-Glu12+Leu-peptide	N	MS	Pro	Lys	Ala	Glu	Leu	Gln	Leu	Pro	Vidmar et al., 2017
Splicing factor 3B subunit 2	Q13435		peptide-Glu38+Ile-peptide	N	MS	Lys	Leu	Ala	Glu	Ile	Gly	Ala	Pro	Vidmar et al., 2017
Splicing factor 3B subunit 2	Q13435		peptide-Glu162+Arg-peptide	N	MS	Gln	Gln	Glu	Glu	Arg	Ala	Lys	Gln	Vidmar et al., 2017
Splicing factor 3B subunit 2	Q13435		peptide-Gly240+Ala-peptide	N	MS	Leu	Pro	Met	Gly	Ala	Pro	Val	Pro	Vidmar et al., 2017
splicing factor arginine/serine-rich 11	Q05519	1-484	peptide-Glu61+Leu-peptide	N	MS	Lys	Ile	Asp	Glu	Leu	Arg	Leu	Phe	Schilling & Overall, 2008
splicing factor arginine/serine-rich 11	Q05519	1-484	peptide-Glu244+Lys-peptide	N	MS	Lys	Lys	Glu	Glu	Lys	Arg	Arg	His	Schilling & Overall, 2008
splicing factor U2AF 65 kDa subunit	P26368	90-108	YWDVPPPGFE+HITPMQYK	N	MS	Pro	Gly	Phe	Glu	His	Ile	Thr	Pro	Schilling & Overall, 2008
splicing factor U2AF 65 kDa subunit	P26368	203-225	peptide-Glu207+Thr-peptide	N	MS	Ser	Val	Asp	Glu	Thr	Thr	Gln	Ala	Schilling & Overall, 2008
splicing factor, arginine/serine-rich 1	Q59FA2	1-233	peptide-Glu175+Ala-peptide	N	MS	His	Met	Arg	Glu	Ala	Gly	Asp	Val	Schilling & Overall, 2008
splicing factor, arginine/serine-rich 2	Q01130	1-24	peptide-Glu11+Gly-peptide	N	MS	Pro	Asp	Val	Glu	Gly	Met	Thr	Ser	Schilling & Overall, 2008
Squamous cell carcinoma antigen recognized by T-cells 3	Q15020		peptide-Glu868+Asn-peptide	N	MS	Thr	Ile	Lys	Glu	Asn	Ile	Ile	Lys	Vidmar et al., 2017
Squamous cell carcinoma antigen recognized by T-cells 3	Q15020		peptide-Glu570+Thr-peptide	N	MS	Gln	Lys	Thr	Glu	Thr	Arg	Leu	Ala	Vidmar et al., 2017
src substrate cortactin	Q14247	1-550	peptide-Glu413+Arg-peptide	N	MS	Pro	Thr	Glu	Glu	Arg	Leu	Pro	Ser	Schilling & Overall, 2008
Src substrate cortactin	Q14247		peptide-Glu393+Gln-peptide	N	MS	Lys	Leu	Glu	Glu	Gln	Ala	Arg	Ala	Vidmar et al., 2017
Src substrate cortactin	Q14247		peptide-Glu36+Gln-peptide	N	MS	Ser	Glu	Lys	Glu	Gln	Arg	Trp	Gly	Vidmar et al., 2017
Src substrate cortactin	Q14247		peptide-Glu65+His-peptide	N	MS	Val	Phe	Gln	Glu	His	Gln	Thr	Leu	Vidmar et al., 2017
Src substrate cortactin	Q14247		peptide-Glu355+Asn-peptide	N	MS	Ala	Asn	Phe	Glu	Asn	Leu	Ala	Lys	Vidmar et al., 2017
Src substrate cortactin	Q14247		peptide-Glu51+His-peptide	N	MS	Gly	His	Gln	Glu	His	Ile	Asn	Ile	Vidmar et al., 2017
Src substrate cortactin isoform 2	Q14247-2	1-634	peptide-Glu376+Arg-peptide	N	MS	Pro	Thr	Glu	Glu	Arg	Leu	Pro	Ser	Schilling & Overall, 2008
SRSF protein kinase 1	Q96SB4		peptide-Glu447+Ser-peptide	N	MS	Gln	Leu	Gln	Glu	Ser	Ile	Arg	Ala	Vidmar et al., 2017
Staphylococcal nuclease domain-containing protein 1	Q7KZF4		peptide-Glu108+Tyr-peptide	N	MS	Gln	Gly	Arg	Glu	Tyr	Gly	Met	Ile	Vidmar et al., 2017
Staphylococcal nuclease domain-containing protein 1	Q7KZF4		peptide-Glu689+Ile-peptide	N	MS	Phe	Val	Thr	Glu	Ile	Thr	Asp	Asp	Vidmar et al., 2017
Staphylococcal nuclease domain-containing protein 1	Q7KZF4		peptide-Glu84+Phe-peptide	N	MS	Pro	Ala	Arg	Glu	Phe	Leu	Arg	Lys	Vidmar et al., 2017
stathmin	P16949	29-41	E+SVPEFPLSPPK	N	MS	-	-	-	Glu	Ser	Val	Pro	Glu	Schilling & Overall, 2008
Stathmin	P16949		peptide-Glu138+Ser-peptide	N	MS	Lys	Asn	Lys	Glu	Ser	Lys	Asp	Pro	Vidmar et al., 2017
Stathmin	P16949		peptide-Glu99+Lys-peptide	N	MS	Met	Ala	Glu	Glu	Lys	Leu	Thr	His	Vidmar et al., 2017
Stathmin	P16949		peptide-Glu89+Asn-peptide	N	MS	Ala	Ile	Glu	Glu	Asn	Asn	Asn	Phe	Vidmar et al., 2017
Stathmin	P16949		peptide-Glu67+Val-peptide	N	MS	His	Glu	Ala	Glu	Val	Leu	Lys	Gln	Vidmar et al., 2017
Stathmin	P16949		peptide-Glu65+Ala-peptide	N	MS	Lys	Ser	His	Glu	Ala	Glu	Val	Leu	Vidmar et al., 2017
Stathmin	P16949		peptide-Glu121+Arg-peptide	N	MS	Ala	Lys	Leu	Glu	Arg	Leu	Arg	Glu	Vidmar et al., 2017
Stathmin	P16949		peptide-Glu132+Val-peptide	N	MS	His	Ile	Glu	Glu	Val	Arg	Lys	Asn	Vidmar et al., 2017
Stathmin	P16949		peptide-Glu21+Leu-peptide	N	MS	Gln	Ala	Phe	Glu	Leu	Ile	Leu	Ser	Vidmar et al., 2017
Stathmin	P16949		peptide-Glu10+Leu-peptide	N	MS	Gln	Val	Lys	Glu	Leu	Glu	Lys	Arg	Vidmar et al., 2017
Stathmin	P16949		peptide-Glu98+Glu-peptide	N	MS	Lys	Met	Ala	Glu	Glu	Lys	Leu	Thr	Vidmar et al., 2017
Stathmin	P16949		peptide-Glu79+Lys-peptide	N	MS	Arg	Glu	His	Glu	Lys	Glu	Val	Leu	Vidmar et al., 2017
stathmin 1 variant	Q59G27	51-63	E+SVPEFPLSPPK	N	MS	-	-	-	Glu	Ser	Val	Pro	Glu	Schilling & Overall, 2008
stationary-phase-induced ribosome-associated protein	P68191	1-45	peptide-Glu26+Gly-peptide	N	MS	Ile	Val	Thr	Glu	Gly	Asp	Lys	Ser	Timmer et al., 2009
STE20-like serine/threonine-protein kinase	Q9H2G2		peptide-Glu579+Val-peptide	N	MS	Glu	Val	Val	Glu	Val	Gly	Gln	Lys	Vidmar et al., 2017
STE20-like serine/threonine-protein kinase	Q9H2G2		peptide-Glu1067+Arg-peptide	N	MS	Gln	Thr	Gln	Glu	Arg	Ala	Arg	Leu	Vidmar et al., 2017
STE20-like serine/threonine-protein kinase	Q9H2G2		peptide-Glu464+His-peptide	N	MS	Thr	Asn	Ile	Glu	His	Asn	Leu	Lys	Vidmar et al., 2017
STE20-like serine/threonine-protein kinase	Q9H2G2		peptide-Glu1151+Lys-peptide	N	MS	Leu	Gln	Asn	Glu	Lys	Cys	His	Leu	Vidmar et al., 2017
STE20-like serine/threonine-protein kinase	Q9H2G2		peptide-Glu962+Phe-peptide	N	MS	Gln	Glu	Gln	Glu	Phe	Val	Gln	Lys	Vidmar et al., 2017
STE20-like serine/threonine-protein kinase	Q9H2G2		peptide-Glu490+Ile-peptide	N	MS	Lys	Ser	Glu	Glu	Ile	Lys	Asp	Thr	Vidmar et al., 2017
STIP1 protein	Q3ZCU9	560-577	DPQALSE+HLKNPVIAQK	N	MS	Ala	Leu	Ser	Glu	His	Leu	Lys	Asn	Schilling & Overall, 2008
STIP1 protein	Q3ZCU9	535-552	AMADPE+VQQIMSDPAMR	N	MS	Ala	Asp	Pro	Glu	Val	Gln	Gln	Ile	Schilling & Overall, 2008
STIP1 protein	Q3ZCU9	462-476	DCEE+CIQLEPTFIK	N	MS	Asp	Cys	Glu	Glu	Cys	Ile	Gln	Leu	Schilling & Overall, 2008
STIP1 protein	Q3ZCU9	1-590	peptide-Glu556+Gln-peptide	N	MS	Leu	Ile	Leu	Glu	Gln	Met	Gln	Lys	Schilling & Overall, 2008
STIP1 protein	Q3ZCU9	1-590	peptide-Glu106+Asp-peptide	N	MS	Lys	Ala	Tyr	Glu	Asp	Gly	Cys	Lys	Schilling & Overall, 2008
Stress-70 protein, mitochondrial	P38646		peptide-Glu658+Arg-peptide	N	MS	Met	Ala	Ser	Glu	Arg	Glu	Gly	Ser	Vidmar et al., 2017
Stress-70 protein, mitochondrial	P38646		peptide-Asp357+Leu-peptide	N	MS	Ile	Val	Thr	Asp	Leu	Ile	Arg	Arg	Vidmar et al., 2017
Stress-70 protein, mitochondrial	P38646		peptide-Glu660+Gly-peptide	N	MS	Ser	Glu	Arg	Glu	Gly	Ser	Gly	Ser	Vidmar et al., 2017
Stress-70 protein, mitochondrial	P38646		peptide-Glu318+Leu-peptide	N	MS	Ala	Lys	Cys	Glu	Leu	Ser	Ser	Ser	Vidmar et al., 2017
Stress-70 protein, mitochondrial	P38646		peptide-Glu155+Ala-peptide	N	MS	Ala	Trp	Val	Glu	Ala	His	Gly	Lys	Vidmar et al., 2017
Stress-70 protein, mitochondrial	P38646		peptide-Glu628+Thr-peptide	N	MS	Lys	Asp	Ser	Glu	Thr	Gly	Glu	Asn	Vidmar et al., 2017
Stress-70 protein, mitochondrial	P38646		peptide-Glu263+Val-peptide	N	MS	Gly	Val	Phe	Glu	Val	Lys	Ser	Thr	Vidmar et al., 2017
Stress-70 protein, mitochondrial	P38646		peptide-Glu492+Met-peptide	N	MS	Gly	Glu	Arg	Glu	Met	Ala	Gly	Asp	Vidmar et al., 2017
Stress-70 protein, mitochondrial	P38646		peptide-Glu566+Lys-peptide	N	MS	Lys	Asn	Ala	Glu	Lys	Tyr	Ala	Glu	Vidmar et al., 2017
Stress-70 protein, mitochondrial	P38646		peptide-Glu293+Thr-peptide	N	MS	Phe	Lys	Arg	Glu	Thr	Gly	Val	Asp	Vidmar et al., 2017
Stress-70 protein, mitochondrial	P38646		peptide-Glu71+Gly-peptide	N	MS	Ala	Val	Met	Glu	Gly	Lys	Gln	Ala	Vidmar et al., 2017
Stress-70 protein, mitochondrial	P38646		peptide-Glu483+Ile-peptide	N	MS	Thr	Gln	Val	Glu	Ile	Lys	Val	Cys	Vidmar et al., 2017
Stress-70 protein, mitochondrial	P38646		peptide-Glu620+Leu-peptide	N	MS	Lys	Met	Arg	Glu	Leu	Leu	Ala	Arg	Vidmar et al., 2017
stress-70 protein, mitochondrial precursor	P38646	348-360	AQFE+GIVTDLIR	N	MS	Ala	Gln	Phe	Glu	Gly	Ile	Val	Thr	Schilling & Overall, 2008
stress-70 protein, mitochondrial precursor	P38646	175-187	ETAE+NYLGHTAK	N	MS	Glu	Thr	Ala	Glu	Asn	Tyr	Leu	Gly	Schilling & Overall, 2008
stress-70 protein, mitochondrial precursor	P38646	595-610	MEE+FKDQLPADECNK	N	MS	-	Met	Glu	Glu	Phe	Lys	Asp	Gln	Schilling & Overall, 2008
stress-70 protein, mitochondrial precursor	P38646	583-595	MAE+GIIHDTETK	N	MS	-	Met	Ala	Glu	Gly	Ile	Ile	His	Schilling & Overall, 2008
stress-70 protein, mitochondrial precursor	P38646	47-679	peptide-Glu176+Thr-peptide	N	MS	Lys	Met	Lys	Glu	Thr	Ala	Glu	Asn	Schilling & Overall, 2008
stress-70 protein, mitochondrial precursor	P38646	47-679	peptide-Glu649+Met-peptide	N	MS	Lys	Leu	Phe	Glu	Met	Ala	Tyr	Lys	Schilling & Overall, 2008
stress-induced-phosphoprotein 1	Q5TZU9	513-530	DPQALSE+HLKNPVIAQK	N	MS	Ala	Leu	Ser	Glu	His	Leu	Lys	Asn	Schilling & Overall, 2008
stress-induced-phosphoprotein 1	Q5TZU9	488-505	AMADPE+VQQIMSDPAMR	N	MS	Ala	Asp	Pro	Glu	Val	Gln	Gln	Ile	Schilling & Overall, 2008
stress-induced-phosphoprotein 1	Q5TZU9	415-429	DCEE+CIQLEPTFIK	N	MS	Asp	Cys	Glu	Glu	Cys	Ile	Gln	Leu	Schilling & Overall, 2008
stress-induced-phosphoprotein 1	Q5TZU9	1-543	peptide-Glu509+Gln-peptide	N	MS	Leu	Ile	Leu	Glu	Gln	Met	Gln	Lys	Schilling & Overall, 2008
stress-induced-phosphoprotein 1	Q5TZU9	1-543	peptide-Glu59+Asp-peptide	N	MS	Lys	Ala	Tyr	Glu	Asp	Gly	Cys	Lys	Schilling & Overall, 2008
Stress-induced-phosphoprotein 1	P31948		peptide-Glu29+Ala-peptide	N	MS	Cys	Tyr	Ser	Glu	Ala	Ile	Lys	Leu	Vidmar et al., 2017
Stress-induced-phosphoprotein 1	P31948		peptide-Glu520+His-peptide	N	MS	Ala	Leu	Ser	Glu	His	Leu	Lys	Asn	Vidmar et al., 2017
Stress-induced-phosphoprotein 1	P31948		peptide-Glu59+Asp-peptide	N	MS	Lys	Ala	Tyr	Glu	Asp	Gly	Cys	Lys	Vidmar et al., 2017
Stress-induced-phosphoprotein 1	P31948		peptide-Glu314+Lys-peptide	N	MS	Phe	Lys	Glu	Glu	Lys	Tyr	Lys	Asp	Vidmar et al., 2017
Stress-induced-phosphoprotein 1	P31948		peptide-Glu369+Cys-peptide	N	MS	Lys	Gly	Asn	Glu	Cys	Phe	Gln	Lys	Vidmar et al., 2017
Stress-induced-phosphoprotein 1	P31948		peptide-Glu350+Arg-peptide	N	MS	Lys	Glu	Gln	Glu	Arg	Leu	Ala	Tyr	Vidmar et al., 2017
Stress-induced-phosphoprotein 1	P31948		peptide-Glu208+Thr-peptide	N	MS	Pro	Lys	Lys	Glu	Thr	Lys	Pro	Glu	Vidmar et al., 2017
Stress-induced-phosphoprotein 1	P31948		peptide-Glu348+Gln-peptide	N	MS	Ile	Leu	Lys	Glu	Gln	Glu	Arg	Leu	Vidmar et al., 2017
Stress-induced-phosphoprotein 1	P31948		peptide-Glu494+Val-peptide	N	MS	Ala	Asp	Pro	Glu	Val	Gln	Gln	Ile	Vidmar et al., 2017
Stress-induced-phosphoprotein 1	P31948		peptide-Glu385+Ala-peptide	N	MS	His	Tyr	Thr	Glu	Ala	Ile	Lys	Arg	Vidmar et al., 2017
Stress-induced-phosphoprotein 1	P31948		peptide-Glu9+Lys-peptide	N	MS	Glu	Leu	Lys	Glu	Lys	Gly	Asn	Lys	Vidmar et al., 2017
Stress-induced-phosphoprotein 1	P31948		peptide-Glu439+Ala-peptide	N	MS	Ala	Ala	Leu	Glu	Ala	Met	Lys	Asp	Vidmar et al., 2017
Stress-induced-phosphoprotein 1	P31948		peptide-Glu419+Cys-peptide	N	MS	Asp	Cys	Glu	Glu	Cys	Ile	Gln	Leu	Vidmar et al., 2017
Stress-induced-phosphoprotein 1	P31948		peptide-Glu409+Phe-peptide	N	MS	Lys	Leu	Leu	Glu	Phe	Gln	Leu	Ala	Vidmar et al., 2017
Stress-induced-phosphoprotein 1	P31948		peptide-Glu102+Ala-peptide	N	MS	Leu	Lys	His	Glu	Ala	Asn	Asn	Pro	Vidmar et al., 2017
Stress-induced-phosphoprotein 1	P31948		peptide-Glu230+Leu-peptide	N	MS	Lys	Glu	Lys	Glu	Leu	Gly	Asn	Asp	Vidmar et al., 2017
striatin-4	Q9NRL3	1-753	peptide-Glu75+Trp-peptide	N	MS	Ile	Gln	His	Glu	Trp	Ala	Arg	Phe	Schilling & Overall, 2008
Structural maintenance of chromosomes protein 2	O95347		peptide-Glu777+Asn-peptide	N	MS	Glu	Val	Leu	Glu	Asn	Lys	Met	Lys	Vidmar et al., 2017
Structural maintenance of chromosomes protein 2	O95347		peptide-Glu912+Leu-peptide	N	MS	Lys	Ile	Lys	Glu	Leu	Asp	His	Asn	Vidmar et al., 2017
Structural maintenance of chromosomes protein 2	O95347		peptide-Glu291+Thr-peptide	N	MS	Lys	Asp	Lys	Glu	Thr	Gly	Gly	Ile	Vidmar et al., 2017
Structural maintenance of chromosomes protein 4	Q9NTJ3		peptide-Glu505+Leu-peptide	N	MS	Ala	Gln	Ser	Glu	Leu	Asp	Ile	Tyr	Vidmar et al., 2017
Structural maintenance of chromosomes protein 4	Q9NTJ3		peptide-Glu1064+Ala-peptide	N	MS	Glu	Asp	Leu	Glu	Ala	Ile	Lys	Asn	Vidmar et al., 2017
succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial precursor	P31040	46-75	peptide-Glu61+Phe-peptide	N	MS	Val	Asp	His	Glu	Phe	Asp	Ala	Val	Schilling & Overall, 2008
Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial	P53597		peptide-Glu77+Tyr-peptide	N	MS	Gln	Ala	Leu	Glu	Tyr	Gly	Thr	Lys	Vidmar et al., 2017
Succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial	Q96I99		peptide-Glu419+Asp-peptide	N	MS	Ile	Asp	Leu	Glu	Asp	Ala	Ala	Lys	Vidmar et al., 2017
sulfotransferase 1A1	P50225	22-48	peptide-Glu26+Ala-peptide	N	MS	Tyr	Phe	Ala	Glu	Ala	Leu	Gly	Pro	Schilling & Overall, 2008
sulfotransferase 1A1	P50225	1-16	ME+LIQDTSRPPLEYVK	N	MS	-	-	Met	Glu	Leu	Ile	Gln	Asp	Schilling & Overall, 2008
sulfotransferase 1A2	P50226	22-48	peptide-Glu26+Ala-peptide	N	MS	Tyr	Phe	Ala	Glu	Ala	Leu	Gly	Pro	Schilling & Overall, 2008
sulfotransferase 1A2	P50226	1-16	ME+LIQDTSRPPLEYVK	N	MS	-	-	Met	Glu	Leu	Ile	Gln	Asp	Schilling & Overall, 2008
sulfotransferase family, cytosolic, 1A, phenol-preferring, member 4	Q2TAB3	1-16	ME+LIQDTSRPPLEYVK	N	MS	-	-	Met	Glu	Leu	Ile	Gln	Asp	Schilling & Overall, 2008
SUMO-activating enzyme subunit 1	Q9UBE0	1-346	peptide-Glu341+Cys-peptide	N	MS	Gly	Ile	Val	Glu	Cys	Leu	Gly	Pro	Schilling & Overall, 2008
SUMO-activating enzyme subunit 2	Q9UBT2	127-152	peptide-Glu138+Ser-peptide	N	MS	Pro	Leu	Ile	Glu	Ser	Gly	Thr	Ala	Schilling & Overall, 2008
SUMO-activating enzyme subunit 2	Q9UBT2	1-640	peptide-Glu157+Cys-peptide	N	MS	Gly	Val	Thr	Glu	Cys	Tyr	Glu	Cys	Schilling & Overall, 2008
SUMO-conjugating enzyme UBC9	P63279		peptide-Glu145+Lys-peptide	N	MS	Val	Glu	Tyr	Glu	Lys	Arg	Val	Arg	Vidmar et al., 2017
SUMO-conjugating enzyme UBC9	P63279		peptide-Glu132+Ala-peptide	N	MS	Ala	Gln	Ala	Glu	Ala	Tyr	Thr	Ile	Vidmar et al., 2017
superkiller viralicidic activity 2-like 2	P42285	1-1042	peptide-Asp141+Ala-peptide	N	MS	Phe	Ile	Leu	Asp	Ala	Phe	Gln	Arg	Schilling & Overall, 2008
Superoxide dismutase [Cu-Zn]	P00441	92-116	peptide-Glu101+Asp-peptide	N	MS	Val	Ser	Ile	Glu	Asp	Ser	Val	Ile	Schilling & Overall, 2008
Superoxide dismutase [Cu-Zn]	P00441	37-70	peptide-Glu50+Phe-peptide	N	MS	His	Val	His	Glu	Phe	Gly	Asp	Asn	Schilling & Overall, 2008
Superoxide dismutase [Cu-Zn]	P00441	2-154	peptide-Glu22+Gln-peptide	N	MS	Ile	Asn	Phe	Glu	Gln	Lys	Glu	Ser	Schilling & Overall, 2008
Superoxide dismutase [Cu-Zn]	P00441	2-154	peptide-Glu41+Gly-peptide	N	MS	Gly	Leu	Thr	Glu	Gly	Leu	His	Gly	Schilling & Overall, 2008
Superoxide dismutase [Cu-Zn]	P00441	2-154	peptide-Glu122+Lys-peptide	N	MS	Val	Val	His	Glu	Lys	Ala	Asp	Asp	Schilling & Overall, 2008
Superoxide dismutase [Cu-Zn]	P00441		peptide-Glu25+Ser-peptide	N	MS	Glu	Gln	Lys	Glu	Ser	Asn	Gly	Pro	Vidmar et al., 2017
Superoxide dismutase [Cu-Zn]	P00441		peptide-Glu134+Ser-peptide	N	MS	Gly	Asn	Glu	Glu	Ser	Thr	Lys	Thr	Vidmar et al., 2017
SWI/SNF complex subunit SMARCC2	Q8TAQ2		peptide-Glu736+Ser-peptide	N	MS	Phe	Gly	Leu	Glu	Ser	Ser	Gly	Ile	Vidmar et al., 2017
Switch-associated protein 70	Q9UH65		peptide-Glu525+Met-peptide	N	MS	Lys	Lys	Leu	Glu	Met	Ala	Thr	Asn	Vidmar et al., 2017
synaptic vesicle membrane protein VAT-1 homolog	Q99536	22-49	peptide-Glu36+Gly-peptide	N	MS	Ala	Ala	Ser	Glu	Gly	Ala	Ala	Ala	Schilling & Overall, 2008
Synaptic vesicle membrane protein VAT-1 homolog	Q99536		peptide-Glu376+Lys-peptide	N	MS	Gln	Met	Gln	Glu	Lys	Lys	Asn	Val	Vidmar et al., 2017
Synaptic vesicle membrane protein VAT-1 homolog	Q99536		peptide-Glu231+Asn-peptide	N	MS	Ala	Leu	Lys	Glu	Asn	Gly	Val	Thr	Vidmar et al., 2017
Synaptic vesicle membrane protein VAT-1 homolog	Q99536		peptide-Glu9+Ala-peptide	N	MS	Glu	Val	Ala	Glu	Ala	Ala	Thr	Gly	Vidmar et al., 2017
Synaptic vesicle membrane protein VAT-1 homolog	Q99536		peptide-Glu24+Ala-peptide	N	MS	Pro	Lys	Thr	Glu	Ala	Ala	Ser	Asp	Vidmar et al., 2017
Syntaxin-7	O15400		peptide-Glu96+Phe-peptide	N	MS	Leu	Val	Ala	Glu	Phe	Thr	Thr	Ser	Vidmar et al., 2017
Syntaxin-7	O15400		peptide-Glu72+Phe-peptide	N	MS	Tyr	Ile	Lys	Glu	Phe	Gly	Ser	Leu	Vidmar et al., 2017
Syntaxin-7	O15400		peptide-Glu31+Ile-peptide	N	MS	Cys	Ser	Val	Glu	Ile	Gln	Arg	Thr	Vidmar et al., 2017
Syntenin-1	O00560		peptide-Glu8+Asp-peptide	N	MS	Pro	Ser	Leu	Glu	Asp	Leu	Lys	Val	Vidmar et al., 2017
T-complex protein 1 subunit alpha	P17987	1-556	peptide-Asp42+Lys-peptide	N	MS	Val	Gly	Leu	Asp	Lys	Met	Leu	Val	Schilling & Overall, 2008
T-complex protein 1 subunit alpha	P17987	1-556	peptide-Glu127+Ala-peptide	N	MS	Ala	Cys	Lys	Glu	Ala	Val	Arg	Tyr	Schilling & Overall, 2008
T-complex protein 1 subunit alpha	P17987		peptide-Glu106+Leu-peptide	N	MS	Asn	Ala	Asp	Glu	Leu	Val	Lys	Gln	Vidmar et al., 2017
T-complex protein 1 subunit alpha	P17987		peptide-Glu66+Val-peptide	N	MS	Lys	Leu	Leu	Glu	Val	Glu	His	Pro	Vidmar et al., 2017
T-complex protein 1 subunit alpha	P17987		peptide-Glu77+Leu-peptide	N	MS	Val	Leu	Cys	Glu	Leu	Ala	Asp	Leu	Vidmar et al., 2017
T-complex protein 1 subunit beta	P78371	388-402	SLHD+ALCVLAQTVK	N	MS	Ser	Leu	His	Asp	Ala	Leu	Cys	Val	Schilling & Overall, 2008
T-complex protein 1 subunit beta	P78371	204-223	LGGSLADSYLDE+GFLLDKK	N	MS	Tyr	Leu	Asp	Glu	Gly	Phe	Leu	Leu	Schilling & Overall, 2008
T-complex protein 1 subunit beta	P78371	156-170	QD+LMNIAGTTLSSK	N	MS	-	-	Gln	Asp	Leu	Met	Asn	Ile	Schilling & Overall, 2008
T-complex protein 1 subunit beta	P78371	405-427	peptide-Glu414+Met-peptide	N	MS	Gly	Cys	Ser	Glu	Met	Leu	Met	Ala	Schilling & Overall, 2008
T-complex protein 1 subunit beta	P78371	322-342	LALVTGGE+IASTFDHPELVK	N	MS	Thr	Gly	Gly	Glu	Ile	Ala	Ser	Thr	Schilling & Overall, 2008
T-complex protein 1 subunit beta	P78371	2-535	peptide-Glu19+Arg-peptide	N	MS	Ala	Asp	Glu	Glu	Arg	Ala	Glu	Thr	Schilling & Overall, 2008
T-complex protein 1 subunit beta	P78371	2-535	peptide-Glu22+Thr-peptide	N	MS	Glu	Arg	Ala	Glu	Thr	Ala	Arg	Leu	Schilling & Overall, 2008
T-complex protein 1 subunit beta	P78371	2-535	peptide-Asp457+Ser-peptide	N	MS	Ala	Gly	Tyr	Asp	Ser	Ala	Asp	Leu	Schilling & Overall, 2008
T-complex protein 1 subunit beta	P78371	2-535	peptide-Asp460+Leu-peptide	N	MS	Asp	Ser	Ala	Asp	Leu	Val	Ala	Gln	Schilling & Overall, 2008
T-complex protein 1 subunit beta	P78371		peptide-Glu339+Leu-peptide	N	MS	Asp	His	Pro	Glu	Leu	Val	Lys	Leu	Vidmar et al., 2017
T-complex protein 1 subunit beta	P78371		peptide-Glu471+Gly-peptide	N	MS	Ala	His	Ser	Glu	Gly	Asn	Thr	Thr	Vidmar et al., 2017
T-complex protein 1 subunit beta	P78371		peptide-Glu197+Ala-peptide	N	MS	Gly	Asn	Leu	Glu	Ala	Ile	His	Ile	Vidmar et al., 2017
T-complex protein 1 subunit beta	P78371		peptide-Gly253+Ser-peptide	N	MS	Lys	Ile	Phe	Gly	Ser	Arg	Val	Arg	Vidmar et al., 2017
T-complex protein 1 subunit beta	P78371		peptide-Glu139+Ala-peptide	N	MS	Ala	Ala	Arg	Glu	Ala	Leu	Leu	Ser	Vidmar et al., 2017
T-complex protein 1 subunit delta	P50991	143-160	GIE+ILTDMSRPVELSDR	N	MS	-	Gly	Ile	Glu	Ile	Leu	Thr	Asp	Schilling & Overall, 2008
T-complex protein 1 subunit delta	P50991	2-539	peptide-Glu506+Leu-peptide	N	MS	Ile	Leu	Glu	Glu	Leu	Val	Val	Gln	Schilling & Overall, 2008
T-complex protein 1 subunit delta	P50991		peptide-Glu524+Thr-peptide	N	MS	Leu	Ala	Thr	Glu	Thr	Val	Arg	Ser	Vidmar et al., 2017
T-complex protein 1 subunit epsilon	P48643	293-323	peptide-Glu309+Ala-peptide	N	MS	Phe	Asp	Asp	Glu	Ala	Asn	His	Leu	Schilling & Overall, 2008
T-complex protein 1 subunit epsilon	P48643	64-89	peptide-Asp73+Gly-peptide	N	MS	Val	Thr	Asn	Asp	Gly	Ala	Thr	Ile	Schilling & Overall, 2008
T-complex protein 1 subunit epsilon	P48643	150-170	ISD+SVLVDIKDTEPLIQTAK	N	MS	-	Ile	Ser	Asp	Ser	Val	Leu	Val	Schilling & Overall, 2008
T-complex protein 1 subunit epsilon	P48643	2-541	peptide-Glu456+Val-peptide	N	MS	Asp	Ala	Leu	Glu	Val	Ile	Pro	Met	Schilling & Overall, 2008
T-complex protein 1 subunit epsilon	P48643		peptide-Glu220+Asp-peptide	N	MS	Gly	Arg	Leu	Glu	Asp	Thr	Lys	Leu	Vidmar et al., 2017
T-complex protein 1 subunit epsilon	P48643		peptide-Glu444+Gln-peptide	N	MS	Pro	Thr	Leu	Glu	Gln	Tyr	Ala	Met	Vidmar et al., 2017
T-complex protein 1 subunit eta isoform 2	Q99832-2	1-339	peptide-Glu209+Met-peptide	N	MS	Gly	Ala	Ile	Glu	Met	Glu	Leu	Ser	Schilling & Overall, 2008
T-complex protein 1 subunit gamma	P49368	399-425	peptide-Glu415+Met-peptide	N	MS	Gly	Ala	Ser	Glu	Met	Ala	Val	Ala	Schilling & Overall, 2008
T-complex protein 1 subunit gamma	P49368	1-545	peptide-Glu382+Ile-peptide	N	MS	Ala	Ser	Lys	Glu	Ile	Leu	Ser	Glu	Schilling & Overall, 2008
T-complex protein 1 subunit gamma	P49368	1-545	peptide-Glu511+Thr-peptide	N	MS	Thr	Ala	Val	Glu	Thr	Ala	Val	Leu	Schilling & Overall, 2008
T-complex protein 1 subunit gamma isoform 2	P49368-2	361-387	peptide-Glu377+Met-peptide	N	MS	Gly	Ala	Ser	Glu	Met	Ala	Val	Ala	Schilling & Overall, 2008
T-complex protein 1 subunit gamma isoform 2	P49368-2	1-507	peptide-Glu344+Ile-peptide	N	MS	Ala	Ser	Lys	Glu	Ile	Leu	Ser	Glu	Schilling & Overall, 2008
T-complex protein 1 subunit gamma isoform 2	P49368-2	1-507	peptide-Glu473+Thr-peptide	N	MS	Thr	Ala	Val	Glu	Thr	Ala	Val	Leu	Schilling & Overall, 2008
T-complex protein 1 subunit theta	P50990	138-152	AHE+ILPNLVCCSAK	N	MS	-	Ala	His	Glu	Ile	Leu	Pro	Asn	Schilling & Overall, 2008
T-complex protein 1 subunit theta	P50990	260-281	peptide-Glu264+Leu-peptide	N	MS	Thr	Ala	Glu	Glu	Leu	Met	Asn	Phe	Schilling & Overall, 2008
T-complex protein 1 subunit theta	P50990	2-548	peptide-Glu94+Gln-peptide	N	MS	His	Met	Gln	Glu	Gln	Glu	Val	Gly	Schilling & Overall, 2008
T-complex protein 1 subunit theta	P50990	2-548	peptide-Glu61+Lys-peptide	N	MS	Asn	His	Leu	Glu	Lys	Leu	Phe	Val	Schilling & Overall, 2008
T-complex protein 1 subunit theta	P50990	2-548	peptide-Glu96+Val-peptide	N	MS	Gln	Glu	Gln	Glu	Val	Gly	Asp	Gly	Schilling & Overall, 2008
T-complex protein 1 subunit theta	P50990		peptide-Glu473+Gly-peptide	N	MS	Val	His	Gln	Glu	Gly	Asn	Lys	Asn	Vidmar et al., 2017
T-complex protein 1 subunit theta	P50990		peptide-Glu17+Gly-peptide	N	MS	Met	Leu	Lys	Glu	Gly	Ala	Lys	His	Vidmar et al., 2017
T-complex protein 1 subunit theta	P50990		peptide-Glu354+Val-peptide	N	MS	Tyr	Leu	Ser	Glu	Val	Gly	Asp	Thr	Vidmar et al., 2017
T-complex protein 1 subunit theta	P50990		peptide-Glu418+Leu-peptide	N	MS	Thr	Glu	Ile	Glu	Leu	Ala	Lys	Gln	Vidmar et al., 2017
T-complex protein 1 subunit theta	P50990		peptide-Glu343+Met-peptide	N	MS	Val	Leu	Glu	Glu	Met	Gly	His	Cys	Vidmar et al., 2017
T-complex protein 1 subunit theta	P50990		peptide-Glu462+Val-peptide	N	MS	Lys	Ala	Asn	Glu	Val	Ile	Ser	Lys	Vidmar et al., 2017
T-complex protein 1 subunit zeta	P40227	2-531	peptide-Glu101+Leu-peptide	N	MS	Ile	Ile	Gly	Glu	Leu	Leu	Lys	Gln	Schilling & Overall, 2008
T-complex protein 1 subunit zeta	P40227	2-531	peptide-Glu192+Ile-peptide	N	MS	Phe	Met	Ile	Glu	Ile	Met	Glu	Met	Schilling & Overall, 2008
T-lymphoma invasion and metastasis-inducing protein 1	Q13009		peptide-Arg561+Leu-peptide	N	MS	Asp	Thr	Leu	Arg	Leu	Leu	Lys	Ser	Vidmar et al., 2017
talin-1	Q9Y490	1654-1673	APGQLECE+TAIAALNSCLR	N	MS	Leu	Glu	Cys	Glu	Thr	Ala	Ile	Ala	Schilling & Overall, 2008
talin-1	Q9Y490	1-2541	peptide-Glu1553+Asn-peptide	N	MS	Phe	Thr	Glu	Glu	Asn	Arg	Ala	Gln	Schilling & Overall, 2008
talin-1	Q9Y490	1-2541	peptide-Glu1949+Leu-peptide	N	MS	Thr	Lys	Lys	Glu	Leu	Ile	Glu	Cys	Schilling & Overall, 2008
talin-1	Q9Y490	1-2541	peptide-Glu872+Ala-peptide	N	MS	Lys	Met	Val	Glu	Ala	Ala	Lys	Gly	Schilling & Overall, 2008
Talin-1	Q9Y490		peptide-Glu2264+Leu-peptide	N	MS	Pro	Ser	Pro	Glu	Leu	Lys	Gln	Gln	Vidmar et al., 2017
Talin-1	Q9Y490		peptide-Glu2517+Ala-peptide	N	MS	Glu	Leu	Glu	Glu	Ala	Arg	Lys	Lys	Vidmar et al., 2017
Talin-1	Q9Y490		peptide-Glu2249+Leu-peptide	N	MS	Gly	Tyr	Leu	Glu	Leu	Leu	Asp	His	Vidmar et al., 2017
Talin-1	Q9Y490		peptide-Glu1405+Ala-peptide	N	MS	Val	Leu	Gly	Glu	Ala	Met	Thr	Gly	Vidmar et al., 2017
Talin-1	Q9Y490		peptide-Glu2288+Ala-peptide	N	MS	Gln	Ala	Ala	Glu	Ala	Met	Lys	Gly	Vidmar et al., 2017
Talin-1	Q9Y490		peptide-Glu1899+Ala-peptide	N	MS	Leu	Ala	Ser	Glu	Ala	Lys	Pro	Ala	Vidmar et al., 2017
Talin-1	Q9Y490		peptide-Glu621+Leu-peptide	N	MS	Ala	Val	Ser	Glu	Leu	Leu	Arg	Ser	Vidmar et al., 2017
Talin-1	Q9Y490		peptide-Glu1708+Ile-peptide	N	MS	Ala	Val	Gln	Glu	Ile	Ser	His	Leu	Vidmar et al., 2017
Talin-1	Q9Y490		peptide-Glu851+Asn-peptide	N	MS	Ser	Asp	Leu	Glu	Asn	Ser	Arg	Lys	Vidmar et al., 2017
Talin-1	Q9Y490		peptide-Glu159+Lys-peptide	N	MS	Lys	Lys	Met	Glu	Lys	Leu	Lys	Gln	Vidmar et al., 2017
Talin-1	Q9Y490		peptide-Glu1770+Ser-peptide	N	MS	Thr	Leu	Ala	Glu	Ser	Ala	Leu	Gln	Vidmar et al., 2017
Talin-1	Q9Y490		peptide-Glu1696+Ala-peptide	N	MS	Ile	Ser	Gln	Glu	Ala	Leu	His	Thr	Vidmar et al., 2017
Talin-1	Q9Y490		peptide-Glu1911+Ile-peptide	N	MS	Glu	Asn	Glu	Glu	Ile	Gly	Ser	His	Vidmar et al., 2017
Talin-1	Q9Y490		peptide-Glu1421+Phe-peptide	N	MS	Asn	Leu	Pro	Glu	Phe	Gly	Asp	Ala	Vidmar et al., 2017
Talin-1	Q9Y490		peptide-Glu1033+Leu-peptide	N	MS	Ala	Leu	Ala	Glu	Leu	Arg	Thr	Ala	Vidmar et al., 2017
Talin-1	Q9Y490		peptide-Glu1881+Leu-peptide	N	MS	Ser	Pro	Glu	Glu	Leu	Gly	Pro	Leu	Vidmar et al., 2017
Talin-1	Q9Y490		peptide-Glu2409+Ala-peptide	N	MS	Asn	Leu	Cys	Glu	Ala	Ala	Asn	Ala	Vidmar et al., 2017
Tax1-binding protein 3	O14907		peptide-Glu67+Ile-peptide	N	MS	Gly	Pro	Ala	Glu	Ile	Ala	Gly	Leu	Vidmar et al., 2017
Teneurin-2	Q9NT68		peptide-Gln2390+Tyr-peptide	N	MS	Lys	Gln	Leu	Gln	Tyr	Thr	Ala	Tyr	Vidmar et al., 2017
testis calpastatin	Q15786	1-430	peptide-Glu158+Ala-peptide	N	MS	Asp	Ala	Val	Glu	Ala	Leu	Ala	Asp	Schilling & Overall, 2008
tetanus toxin	P04958	2-457; 458-1315	peptide-Glu450+Asn-peptide	N		Asn	Ile	Arg	Glu	Asn	Leu	Tyr	Asn	Krieglstein et al., 1991
Tetratricopeptide repeat protein 1	Q99614		peptide-Glu267+Asn-peptide	N	MS	Leu	Ser	Thr	Glu	Asn	Phe	Gln	Ile	Vidmar et al., 2017
Tetratricopeptide repeat protein 1	Q99614		peptide-Glu125+Gln-peptide	N	MS	Glu	Gly	Asn	Glu	Gln	Phe	Lys	Lys	Vidmar et al., 2017
Tetratricopeptide repeat protein 1	Q99614		peptide-Glu50+Ala-peptide	N	MS	Arg	Asp	Asp	Glu	Ala	His	Leu	Gln	Vidmar et al., 2017
Tetratricopeptide repeat protein 1	Q99614		peptide-Glu99+Leu-peptide	N	MS	Tyr	Leu	Ile	Glu	Leu	Glu	Lys	Asn	Vidmar et al., 2017
Tetratricopeptide repeat protein 1	Q99614		peptide-Glu172+Met-peptide	N	MS	Asp	Lys	Lys	Glu	Met	Ala	Ile	Asn	Vidmar et al., 2017
Tetratricopeptide repeat protein 1	Q99614		peptide-Glu217+Lys-peptide	N	MS	Ser	Ile	Leu	Glu	Lys	Asp	Pro	Ser	Vidmar et al., 2017
Tetratricopeptide repeat protein 1	Q99614		peptide-Glu101+Lys-peptide	N	MS	Ile	Glu	Leu	Glu	Lys	Asn	Met	Ser	Vidmar et al., 2017
thioredoxin	P10599	2-105	peptide-Glu47+Lys-peptide	N	MS	Ser	Leu	Ser	Glu	Lys	Tyr	Ser	Asn	Schilling & Overall, 2008
Thioredoxin	P10599		peptide-Glu70+Val-peptide	N	MS	Ser	Glu	Cys	Glu	Val	Lys	Cys	Met	Vidmar et al., 2017
Thioredoxin	P10599		peptide-Glu88+Phe-peptide	N	MS	Lys	Val	Gly	Glu	Phe	Ser	Gly	Ala	Vidmar et al., 2017
thioredoxin C-1	P00275	1-105	peptide-Glu28+Trp-peptide	N		Phe	Trp	Ala	Glu	Trp	Cys	Gly	Pro	Meng et al., 1981
thioredoxin C-1	P00275	1-105	peptide-Glu42+Ile-peptide	N		Ala	Leu	Asp	Glu	Ile	Ala	Thr	Glu	Meng et al., 1981
thioredoxin C-1	P00275	1-105	peptide-Glu46+Met-peptide	N		Ile	Ala	Thr	Glu	Met	Ala	Gly	Gln	Meng et al., 1981
thioredoxin C-1	P00275	1-105	peptide-Glu63+Leu-peptide	N		Glu	Asn	Pro	Glu	Leu	Ala	Ala	Gln	Meng et al., 1981
thioredoxin C-1	P00275	1-105	peptide-Glu83+Leu-peptide	N		Lys	Asp	Gly	Glu	Leu	Ala	Ala	Asn	Meng et al., 1981
Thioredoxin domain-containing protein 12	O95881		peptide-Gly26+His-peptide	N	MS	Ser	Ser	Asp	Gly	His	Asn	Gly	Leu	Vidmar et al., 2017
Thioredoxin domain-containing protein 12	O95881		peptide-Glu153+Ala-peptide	N	MS	Gly	Met	Lys	Glu	Ala	Gln	Glu	Arg	Vidmar et al., 2017
Thioredoxin domain-containing protein 12	O95881		peptide-Glu156+Arg-peptide	N	MS	Glu	Ala	Gln	Glu	Arg	Leu	Thr	Gly	Vidmar et al., 2017
thioredoxin domain-containing protein 12 precursor	O95881	27-172	peptide-Glu127+Ile-peptide	N	MS	Val	His	Pro	Glu	Ile	Ile	Asn	Glu	Schilling & Overall, 2008
Thioredoxin domain-containing protein 5	Q8NBS9		peptide-Glu252+Leu-peptide	N	MS	Gln	His	Tyr	Glu	Leu	Cys	Ser	Gly	Vidmar et al., 2017
Thioredoxin domain-containing protein 5	Q8NBS9		peptide-Glu318+Ala-peptide	N	MS	Ala	Glu	Pro	Glu	Ala	Asp	Lys	Gly	Vidmar et al., 2017
Thioredoxin domain-containing protein 5	Q8NBS9		peptide-Asp270+Gly-peptide	N	MS	Trp	Phe	Arg	Asp	Gly	Lys	Lys	Val	Vidmar et al., 2017
Thioredoxin domain-containing protein 5	Q8NBS9		peptide-Glu384+Arg-peptide	N	MS	Cys	Thr	Ala	Glu	Arg	Asn	Ile	Cys	Vidmar et al., 2017
Thioredoxin domain-containing protein 5	Q8NBS9		peptide-Glu410+His-peptide	N	MS	Lys	Val	Ser	Glu	His	Ser	Gly	Gly	Vidmar et al., 2017
thioredoxin domain-containing protein 5 precursor	Q8NBS9	33-432	peptide-Glu147+Ala-peptide	N	MS	Pro	Gly	Gln	Glu	Ala	Val	Lys	Tyr	Schilling & Overall, 2008
Thioredoxin domain-containing protein 5, isoform 2	Q8NBS9-2	1-324	peptide-Glu39+Ala-peptide	N	MS	Pro	Gly	Gln	Glu	Ala	Val	Lys	Tyr	Schilling & Overall, 2008
Thioredoxin-dependent peroxide reductase, mitochondrial	P30048		peptide-Glu223+Thr-peptide	N	MS	Gln	Tyr	Val	Glu	Thr	His	Gly	Glu	Vidmar et al., 2017
Thioredoxin-dependent peroxide reductase, mitochondrial	P30048		peptide-Glu211+Thr-peptide	N	MS	Ser	Val	Glu	Glu	Thr	Leu	Arg	Leu	Vidmar et al., 2017
thioredoxin-dependent peroxide reductase, mitochondrial precursor	P30048	217-248	peptide-Glu227+Val-peptide	N	MS	Thr	His	Gly	Glu	Val	Cys	Pro	Ala	Schilling & Overall, 2008
thioredoxin-dependent peroxide reductase, mitochondrial precursor	P30048	63-256	peptide-Glu249+Tyr-peptide	N	MS	Ala	Ser	Lys	Glu	Tyr	Phe	Gln	Lys	Schilling & Overall, 2008
Thioredoxin-like protein 1	O43396		peptide-Glu256+Thr-peptide	N	MS	Gly	Glu	Glu	Glu	Thr	Thr	Arg	Ile	Vidmar et al., 2017
THO complex subunit 1	Q96FV9	1-657	peptide-Glu624+Gly-peptide	N	MS	Gln	Asp	Gln	Glu	Gly	Val	His	Ala	Schilling & Overall, 2008
THO complex subunit 3	Q96J01		peptide-Glu338+Ala-peptide	N	MS	Ser	Ser	Arg	Glu	Ala	Gly	Thr	Val	Vidmar et al., 2017
Threonine--tRNA ligase, cytoplasmic	P26639		peptide-Glu74+Lys-peptide	N	MS	Ile	Leu	Ala	Glu	Lys	Ala	Glu	Lys	Vidmar et al., 2017
Threonine--tRNA ligase, cytoplasmic	P26639		peptide-Met13+Gly-peptide	N	MS	Ser	Gly	Lys	Met	Gly	Gly	Glu	Glu	Vidmar et al., 2017
threonyl-tRNA synthetase, cytoplasmic	P26639	442-454	NE+LSGALTGLTR	N	MS	-	-	Asn	Glu	Leu	Ser	Gly	Ala	Schilling & Overall, 2008
threonyl-tRNA synthetase, cytoplasmic	P26639	434-442	AD+FGVLHR	N	MS	-	-	Ala	Asp	Phe	Gly	Val	Leu	Schilling & Overall, 2008
thymidine phosphorylase precursor	P19971	11-482	peptide-Glu367+Arg-peptide	N	MS	Ser	Pro	Ala	Glu	Arg	Arg	Gln	Leu	Schilling & Overall, 2008
thyroid hormone receptor-associated protein 3	Q9Y2W1	215-235	ASE+SSKPWPDATYGTGSASR	N	MS	-	Ala	Ser	Glu	Ser	Ser	Lys	Pro	Schilling & Overall, 2008
Thyroid hormone receptor-associated protein 3	Q9Y2W1		peptide-Glu203+Gln-peptide	N	MS	Glu	Ala	Lys	Glu	Gln	Thr	Phe	Ser	Vidmar et al., 2017
Tissue factor	P13726		peptide-Glu94+Ile-peptide	N	MS	Leu	Thr	Asp	Glu	Ile	Val	Lys	Asp	Vidmar et al., 2017
tissue-type plasminogen activator	P00750	23-562	peptide-Glu310+Ile-peptide	S		Pro	Gln	Phe	Glu	Ile	Lys	Gly	Gly	Tate et al., 1987	19602
transaldolase	P37837	1-337	peptide-Asp27+Thr-peptide	N	MS	Val	Val	Ala	Asp	Thr	Gly	Asp	Phe	Schilling & Overall, 2008
transaldolase	P37837	1-337	peptide-Glu36+Tyr-peptide	N	MS	Ala	Ile	Asp	Glu	Tyr	Lys	Pro	Gln	Schilling & Overall, 2008
Transaldolase	P37837		peptide-Glu106+Val-peptide	N	MS	Val	Ser	Thr	Glu	Val	Asp	Ala	Arg	Vidmar et al., 2017
Transaldolase	P37837		peptide-Glu94+Ile-peptide	N	MS	Phe	Gly	Ala	Glu	Ile	Leu	Lys	Lys	Vidmar et al., 2017
Transaldolase	P37837		peptide-Gly69+Arg-peptide	N	MS	Ile	Ala	Tyr	Gly	Arg	Lys	Leu	Gly	Vidmar et al., 2017
Transaldolase	P37837		peptide-Glu291+Lys-peptide	N	MS	His	Leu	Asp	Glu	Lys	Ser	Phe	Arg	Vidmar et al., 2017
Transaldolase	P37837		peptide-Glu12+Ser-peptide	N	MS	Gln	Arg	Met	Glu	Ser	Ala	Leu	Asp	Vidmar et al., 2017
Transaldolase	P37837		peptide-Glu328+Arg-peptide	N	MS	Met	Leu	Thr	Glu	Arg	Met	Phe	Asn	Vidmar et al., 2017
Transcription elongation factor 1 homolog	P60002		peptide-Glu21+Thr-peptide	N	MS	Gly	Thr	Leu	Glu	Thr	Gln	Phe	Thr	Vidmar et al., 2017
Transcription elongation factor A protein 1	P23193		peptide-Glu235+Met-peptide	N	MS	Glu	Leu	Lys	Glu	Met	Arg	Lys	Asn	Vidmar et al., 2017
Transcription elongation factor A protein-like 3	Q969E4		peptide-Glu142+Cys-peptide	N	MS	Met	Met	Arg	Glu	Cys	Gly	Asp	Val	Vidmar et al., 2017
transcription elongation factor B polypeptide 2	Q15370	55-80	peptide-Glu59+Cys-peptide	N	MS	Thr	Leu	Gly	Glu	Cys	Gly	Phe	Thr	Schilling & Overall, 2008
Transcription elongation factor SPT5	O00267		peptide-Glu106+Ala-peptide	N	MS	Glu	Glu	Ile	Glu	Ala	Ser	Asn	Ile	Vidmar et al., 2017
Transcription elongation factor SPT6	Q7KZ85		peptide-Glu278+Ser-peptide	N	MS	Ser	Glu	Leu	Glu	Ser	Ser	His	Leu	Vidmar et al., 2017
Transcription factor A, mitochondrial	Q00059		peptide-Glu63+Gln-peptide	N	MS	Phe	Ser	Lys	Glu	Gln	Leu	Pro	Ile	Vidmar et al., 2017
Transcription factor A, mitochondrial	Q00059		peptide-Glu214+Met-peptide	N	MS	Tyr	His	Asn	Glu	Met	Lys	Ser	Trp	Vidmar et al., 2017
Transcription factor A, mitochondrial	Q00059		peptide-Glu172+Ala-peptide	N	MS	Arg	Phe	Gln	Glu	Ala	Lys	Gly	Asp	Vidmar et al., 2017
Transcription factor A, mitochondrial	Q00059		peptide-Glu132+Ile-peptide	N	MS	Leu	Glu	Lys	Glu	Ile	Met	Asp	Lys	Vidmar et al., 2017
Transcription factor A, mitochondrial	Q00059		peptide-Glu130+Lys-peptide	N	MS	Met	Ser	Leu	Glu	Lys	Glu	Ile	Met	Vidmar et al., 2017
Transcription factor A, mitochondrial	Q00059		peptide-Glu187+Asn-peptide	N	MS	Thr	Val	Lys	Glu	Asn	Trp	Lys	Asn	Vidmar et al., 2017
Transcription factor BTF3	P20290		peptide-Glu26+Ala-peptide	N	MS	Pro	Gly	Gly	Glu	Ala	Thr	Leu	Ser	Vidmar et al., 2017
Transcription factor BTF3	P20290		peptide-Glu167+Ala-peptide	N	MS	Arg	Leu	Ala	Glu	Ala	Leu	Pro	Lys	Vidmar et al., 2017
Transcription factor BTF3	P20290		peptide-Glu145+Met-peptide	N	MS	Gln	Leu	Thr	Glu	Met	Leu	Pro	Ser	Vidmar et al., 2017
Transcription factor BTF3	P20290		peptide-Glu195+Asn-peptide	N	MS	Asp	Leu	Val	Glu	Asn	Phe	Asp	Glu	Vidmar et al., 2017
transcription factor BTF3 homolog 4	Q96K17	1-158	peptide-Glu90+Ala-peptide	N	MS	Gly	His	Ala	Glu	Ala	Lys	Pro	Ile	Schilling & Overall, 2008
transcription factor BTF3 homolog 4	Q96K17	1-158	peptide-Glu56+Val-peptide	N	MS	Gly	Ile	Glu	Glu	Val	Asn	Met	Ile	Schilling & Overall, 2008
Transcription factor BTF3 homolog 4	Q96K17		peptide-Glu96+Met-peptide	N	MS	Pro	Ile	Thr	Glu	Met	Leu	Pro	Gly	Vidmar et al., 2017
Transcription intermediary factor 1-beta	Q13263		peptide-Glu491+Arg-peptide	N	MS	Val	Ser	Leu	Glu	Arg	Leu	Asp	Leu	Vidmar et al., 2017
Transcription intermediary factor 1-beta	Q13263		peptide-Glu477+Val-peptide	N	MS	Gly	Glu	Gly	Glu	Val	Ser	Gly	Leu	Vidmar et al., 2017
Transcription intermediary factor 1-beta	Q13263		peptide-Glu447+Gly-peptide	N	MS	Glu	Val	Gln	Glu	Gly	Tyr	Gly	Phe	Vidmar et al., 2017
Transcriptional coactivator YAP1	P46937		peptide-Glu373+Leu-peptide	N	MS	Met	Ser	Gln	Glu	Leu	Arg	Thr	Met	Vidmar et al., 2017
Transcriptional coactivator YAP1	P46937		peptide-Glu345+Leu-peptide	N	MS	Lys	Cys	Gln	Glu	Leu	Ala	Leu	Arg	Vidmar et al., 2017
Transforming acidic coiled-coil-containing protein 3	Q9Y6A5		peptide-Glu18+Asn-peptide	N	MS	Lys	Asn	Thr	Glu	Asn	Cys	Asp	Phe	Vidmar et al., 2017
Transforming acidic coiled-coil-containing protein 3	Q9Y6A5		peptide-Glu339+Phe-peptide	N	MS	Val	Lys	Leu	Glu	Phe	Asp	Val	Ser	Vidmar et al., 2017
Transforming acidic coiled-coil-containing protein 3	Q9Y6A5		peptide-Glu209+Ser-peptide	N	MS	Cys	Arg	Thr	Glu	Ser	Gln	His	Lys	Vidmar et al., 2017
Transforming acidic coiled-coil-containing protein 3	Q9Y6A5		peptide-Glu781+Ile-peptide	N	MS	Ala	Asn	Glu	Glu	Ile	Ala	Gln	Val	Vidmar et al., 2017
Transforming protein RhoA	P61586		peptide-Glu102+Val-peptide	N	MS	Trp	Thr	Pro	Glu	Val	Lys	His	Phe	Vidmar et al., 2017
transgelin-2	P37802	88-102	QME+QISQFLQAAER	N	MS	-	Gln	Met	Glu	Gln	Ile	Ser	Gln	Schilling & Overall, 2008
Transgelin-2	P37802		peptide-Glu27+Gln-peptide	N	MS	Ala	Asp	Leu	Glu	Gln	Ile	Leu	Ile	Vidmar et al., 2017
Transgelin-2	P37802		peptide-Glu13+Val-peptide	N	MS	Leu	Ser	Arg	Glu	Val	Gln	Gln	Lys	Vidmar et al., 2017
Transgelin-2	P37802		peptide-Glu50+Asn-peptide	N	MS	Pro	Gly	Arg	Glu	Asn	Phe	Gln	Asn	Vidmar et al., 2017
transitional endoplasmic reticulum ATPase	P55072	487-505	ELQE+LVQYPVEHPDKFLK	N	MS	Glu	Leu	Gln	Glu	Leu	Val	Gln	Tyr	Schilling & Overall, 2008
transitional endoplasmic reticulum ATPase	P55072	754-766	YE+MFAQTLQQSR	N	MS	-	-	Tyr	Glu	Met	Phe	Ala	Gln	Schilling & Overall, 2008
transitional endoplasmic reticulum ATPase	P55072	2-806	peptide-Glu433+Asp-peptide	N	MS	Ile	Asp	Leu	Glu	Asp	Glu	Thr	Ile	Schilling & Overall, 2008
transitional endoplasmic reticulum ATPase	P55072	2-806	peptide-Glu261+Thr-peptide	N	MS	Val	Ala	Asn	Glu	Thr	Gly	Ala	Phe	Schilling & Overall, 2008
transitional endoplasmic reticulum ATPase	P55072	2-806	peptide-Glu701+Ser-peptide	N	MS	Ala	Ile	Arg	Glu	Ser	Ile	Glu	Ser	Schilling & Overall, 2008
Transitional endoplasmic reticulum ATPase	P55072		peptide-Glu710+Arg-peptide	N	MS	Ile	Arg	Arg	Glu	Arg	Glu	Arg	Gln	Vidmar et al., 2017
Transitional endoplasmic reticulum ATPase	P55072		peptide-Glu561+Ile-peptide	N	MS	Asn	Val	Arg	Glu	Ile	Phe	Asp	Lys	Vidmar et al., 2017
Transitional endoplasmic reticulum ATPase	P55072		peptide-Glu167+Thr-peptide	N	MS	Lys	Val	Val	Glu	Thr	Asp	Pro	Ser	Vidmar et al., 2017
Transitional endoplasmic reticulum ATPase	P55072		peptide-Glu417+Ala-peptide	N	MS	Leu	Cys	Ser	Glu	Ala	Ala	Leu	Gln	Vidmar et al., 2017
Transitional endoplasmic reticulum ATPase	P55072		peptide-Glu379+Ile-peptide	N	MS	Gly	Arg	Leu	Glu	Ile	Leu	Gln	Ile	Vidmar et al., 2017
Transitional endoplasmic reticulum ATPase	P55072		peptide-Glu185+Gly-peptide	N	MS	Ile	His	Cys	Glu	Gly	Glu	Pro	Ile	Vidmar et al., 2017
Transitional endoplasmic reticulum ATPase	P55072		peptide-Glu738+Ala-peptide	N	MS	His	Phe	Glu	Glu	Ala	Met	Arg	Phe	Vidmar et al., 2017
Transitional endoplasmic reticulum ATPase	P55072		peptide-Glu712+Arg-peptide	N	MS	Arg	Glu	Arg	Glu	Arg	Gln	Thr	Asn	Vidmar et al., 2017
Transitional endoplasmic reticulum ATPase	P55072		peptide-Glu578+Leu-peptide	N	MS	Phe	Phe	Asp	Glu	Leu	Asp	Ser	Ile	Vidmar et al., 2017
Transitional endoplasmic reticulum ATPase	P55072		peptide-Glu292+Ala-peptide	N	MS	Ala	Phe	Glu	Glu	Ala	Glu	Lys	Asn	Vidmar et al., 2017
Transitional endoplasmic reticulum ATPase	P55072		peptide-Glu305+Leu-peptide	N	MS	Phe	Ile	Asp	Glu	Leu	Asp	Ala	Ile	Vidmar et al., 2017
Transitional endoplasmic reticulum ATPase	P55072		peptide-Glu34+Asp-peptide	N	MS	Ala	Ile	Asn	Glu	Asp	Asn	Ser	Val	Vidmar et al., 2017
Transitional endoplasmic reticulum ATPase	P55072		peptide-Glu730+Ile-peptide	N	MS	Pro	Val	Pro	Glu	Ile	Arg	Arg	Asp	Vidmar et al., 2017
Transitional endoplasmic reticulum ATPase	P55072		peptide-Glu366+Val-peptide	N	MS	Phe	Asp	Arg	Glu	Val	Asp	Ile	Gly	Vidmar et al., 2017
Transitional endoplasmic reticulum ATPase	P55072		peptide-Glu402+Thr-peptide	N	MS	Val	Ala	Asn	Glu	Thr	His	Gly	His	Vidmar et al., 2017
Transitional endoplasmic reticulum ATPase	P55072		peptide-Glu141+Ala-peptide	N	MS	Tyr	Phe	Leu	Glu	Ala	Tyr	Arg	Pro	Vidmar et al., 2017
Transitional endoplasmic reticulum ATPase	P55072		peptide-Glu200+Val-peptide	N	MS	Ser	Leu	Asn	Glu	Val	Gly	Tyr	Asp	Vidmar et al., 2017
Transitional endoplasmic reticulum ATPase	P55072		peptide-Glu440+Val-peptide	N	MS	Ile	Asp	Ala	Glu	Val	Met	Asn	Ser	Vidmar et al., 2017
Transitional endoplasmic reticulum ATPase	P55072		peptide-Glu673+Phe-peptide	N	MS	Val	Asp	Leu	Glu	Phe	Leu	Ala	Lys	Vidmar et al., 2017
Transitional endoplasmic reticulum ATPase	P55072		peptide-Glu689+Ile-peptide	N	MS	Asp	Leu	Thr	Glu	Ile	Cys	Gln	Arg	Vidmar et al., 2017
Transitional endoplasmic reticulum ATPase	P55072		peptide-Glu466+Thr-peptide	N	MS	Ala	Leu	Arg	Glu	Thr	Val	Val	Glu	Vidmar et al., 2017
transketolase	P29401	1-623	peptide-Glu255+Ser-peptide	N	MS	Glu	Asp	Lys	Glu	Ser	Trp	His	Gly	Schilling & Overall, 2008
Transketolase	P29401		peptide-Glu459+Leu-peptide	N	MS	Lys	Ala	Val	Glu	Leu	Ala	Ala	Asn	Vidmar et al., 2017
translation initiation factor IF-2	P0A705	1-890	peptide-Glu372+Leu-peptide	N	MS	Arg	Glu	Asn	Glu	Leu	Glu	Glu	Ala	Timmer et al., 2009
translation initiation factor IF-2	P0A705	1-890	peptide-Glu375+Ala-peptide	N	MS	Glu	Leu	Glu	Glu	Ala	Val	Met	Ser	Timmer et al., 2009
translation initiation factor IF-2	P0A705	1-890	peptide-Glu436+Asn-peptide	N	MS	Val	Glu	Thr	Glu	Asn	Gly	Met	Ile	Timmer et al., 2009
translational activator GCN1	Q92616	1414-1430	QQE+MMAALTDAIQDKK	N	MS	-	Gln	Gln	Glu	Met	Met	Ala	Ala	Schilling & Overall, 2008
translationally-controlled tumor protein	P13693	1-172	peptide-Glu153+Asp-peptide	N	MS	Asp	Tyr	Arg	Glu	Asp	Gly	Val	Thr	Schilling & Overall, 2008
Translationally-controlled tumor protein	P13693		peptide-Glu32+Gly-peptide	N	MS	Leu	Glu	Val	Glu	Gly	Lys	Met	Val	Vidmar et al., 2017
Translationally-controlled tumor protein	P13693		peptide-Glu63+Ser-peptide	N	MS	Glu	Gly	Thr	Glu	Ser	Thr	Val	Ile	Vidmar et al., 2017
Translationally-controlled tumor protein	P13693		peptide-Glu12+Met-peptide	N	MS	Ser	His	Asp	Glu	Met	Phe	Ser	Asp	Vidmar et al., 2017
Translin-associated protein X	Q99598		peptide-Glu5+Gly-peptide	N	MS	Ser	Asn	Lys	Glu	Gly	Ser	Gly	Gly	Vidmar et al., 2017
Transmembrane emp24 domain-containing protein 10	P49755		peptide-Glu110+Ser-peptide	N	MS	Val	Cys	Phe	Glu	Ser	Lys	Gly	Thr	Vidmar et al., 2017
Transmembrane emp24 domain-containing protein 2	Q15363		peptide-Glu124+Ala-peptide	N	MS	Met	Glu	Thr	Glu	Ala	His	Gln	Asn	Vidmar et al., 2017
Transmembrane emp24 domain-containing protein 2	Q15363		peptide-Glu60+Ile-peptide	N	MS	Ile	Asp	Val	Glu	Ile	Thr	Gly	Pro	Vidmar et al., 2017
Transmembrane emp24 domain-containing protein 2	Q15363		peptide-Glu136+Leu-peptide	N	MS	Met	Ile	Asn	Glu	Leu	Ala	Val	Ala	Vidmar et al., 2017
Transmembrane protein 109	Q9BVC6		peptide-Glu225+Leu-peptide	N	MS	Gln	Val	Glu	Glu	Leu	Arg	Trp	Arg	Vidmar et al., 2017
Transmembrane protein 109	Q9BVC6		peptide-Glu213+Ala-peptide	N	MS	Ala	Gln	Leu	Glu	Ala	Lys	Val	Arg	Vidmar et al., 2017
Transmembrane protein 179B	Q7Z7N9		peptide-Glu207+Thr-peptide	N	MS	Trp	Ser	Ser	Glu	Thr	Asp	Ala	Leu	Vidmar et al., 2017
Treacle protein	Q13428		peptide-Glu1401+Lys-peptide	N	MS	Asp	Val	Lys	Glu	Lys	Lys	Gly	Lys	Vidmar et al., 2017
Treacle protein isoform 6	Q13428-6	1-1414	peptide-Glu123+Lys-peptide	N	MS	Ser	Met	Lys	Glu	Lys	Ala	Lys	Ala	Schilling & Overall, 2008
Trifunctional enzyme subunit alpha, mitochondrial	P40939		peptide-Glu461+Val-peptide	N	MS	Val	Leu	Lys	Glu	Val	Glu	Ala	Val	Vidmar et al., 2017
Trifunctional enzyme subunit beta, mitochondrial	P55084		peptide-Glu258+Gly-peptide	N	MS	Ala	Gln	Asp	Glu	Gly	Leu	Leu	Ser	Vidmar et al., 2017
Trifunctional purine biosynthetic protein adenosine-3	P22102		peptide-Glu980+His-peptide	N	MS	Lys	Leu	Ala	Glu	His	Lys	Ile	Phe	Vidmar et al., 2017
trigger factor	P0A850	1-432	peptide-Glu116+Leu-peptide	N	MS	Pro	Glu	Val	Glu	Leu	Gln	Gly	Leu	Timmer et al., 2009
trigger factor	P0A850	1-432	peptide-Glu25+Thr-peptide	N	MS	Asp	Ser	Ile	Glu	Thr	Ala	Val	Lys	Timmer et al., 2009
trigger factor	P0A850	1-432	peptide-Glu121+Ala-peptide	N	MS	Gln	Gly	Leu	Glu	Ala	Ile	Glu	Val	Timmer et al., 2009
trigger factor	P0A850	1-432	peptide-Glu131+Val-peptide	N	MS	Pro	Ile	Val	Glu	Val	Thr	Asp	Ala	Timmer et al., 2009
triosephosphate isomerase	Q2QD09	219-248	peptide-Glu240+Phe-peptide	N	MS	Leu	Lys	Pro	Glu	Phe	Val	Asp	Ile	Schilling & Overall, 2008
Triosephosphate isomerase	P60174		peptide-Glu224+Lys-peptide	N	MS	Glu	Val	His	Glu	Lys	Leu	Arg	Gly	Vidmar et al., 2017
Triosephosphate isomerase	P60174		peptide-Gly158+Leu-peptide	N	MS	Leu	Ala	Glu	Gly	Leu	Gly	Val	Ile	Vidmar et al., 2017
Triosephosphate isomerase	P60174		peptide-Glu157+Gly-peptide	N	MS	Ala	Leu	Ala	Glu	Gly	Leu	Gly	Val	Vidmar et al., 2017
Triosephosphate isomerase	P60174		peptide-Glu257+Leu-peptide	N	MS	Thr	Cys	Lys	Glu	Leu	Ala	Ser	Gln	Vidmar et al., 2017
Triosephosphate isomerase	P60174		peptide-Gly247+Gly-peptide	N	MS	Ile	Ile	Tyr	Gly	Gly	Ser	Val	Thr	Vidmar et al., 2017
Triosephosphate isomerase	P60174		peptide-Glu61+Leu-peptide	N	MS	Ser	Leu	Gly	Glu	Leu	Ile	Gly	Thr	Vidmar et al., 2017
Triosephosphate isomerase	P60174		peptide-Glu142+Ser-peptide	N	MS	Val	Phe	Gly	Glu	Ser	Asp	Glu	Leu	Vidmar et al., 2017
Triosephosphate isomerase	P60174		peptide-Glu277+Phe-peptide	N	MS	Leu	Lys	Pro	Glu	Phe	Val	Asp	Ile	Vidmar et al., 2017
Triosephosphate isomerase	P60174		peptide-Gly209+Thr-peptide	N	MS	Trp	Ala	Ile	Gly	Thr	Gly	Lys	Thr	Vidmar et al., 2017
Tripartite motif-containing protein 7	Q9C029		peptide-Val163+Leu-peptide	N	MS	Glu	His	Ala	Val	Leu	Pro	Leu	Asp	Vidmar et al., 2017
Tripeptidyl-peptidase 2	P29144		peptide-Glu132+Arg-peptide	N	MS	Ile	Gln	Lys	Glu	Arg	Lys	Glu	Lys	Vidmar et al., 2017
Tripeptidyl-peptidase 2	P29144		peptide-Ala460+Leu-peptide	N	MS	Gly	Gly	Ile	Ala	Leu	Ile	Leu	Ser	Vidmar et al., 2017
Tropomodulin-3	Q9NYL9		peptide-Glu162+His-peptide	N	MS	Val	Asp	Gln	Glu	His	Phe	Ser	Asn	Vidmar et al., 2017
Tropomodulin-3	Q9NYL9		peptide-Glu42+Asn-peptide	N	MS	Leu	Asp	Pro	Glu	Asn	Ala	Leu	Leu	Vidmar et al., 2017
Tropomodulin-3	Q9NYL9		peptide-Glu10+Lys-peptide	N	MS	Lys	Asp	Leu	Glu	Lys	Tyr	Lys	Asp	Vidmar et al., 2017
Tropomodulin-3	Q9NYL9		peptide-Glu67+His-peptide	N	MS	Phe	Asp	Arg	Glu	His	Leu	Leu	Ser	Vidmar et al., 2017
Tropomyosin alpha-1 chain	P09493		peptide-Glu150+Ala-peptide	N	MS	Gln	Leu	Lys	Glu	Ala	Lys	His	Ile	Vidmar et al., 2017
Tropomyosin alpha-1 chain	P09493		peptide-Glu224+Ile-peptide	N	MS	Tyr	Glu	Glu	Glu	Ile	Lys	Val	Leu	Vidmar et al., 2017
Tropomyosin alpha-1 chain	P09493		peptide-Glu82+Ala-peptide	N	MS	Thr	Asp	Ala	Glu	Ala	Asp	Val	Ala	Vidmar et al., 2017
Tropomyosin alpha-1 chain	P09493		peptide-Glu240+Phe-peptide	N	MS	Thr	Arg	Ala	Glu	Phe	Ala	Glu	Arg	Vidmar et al., 2017
Tropomyosin alpha-1 chain	P09493		peptide-Glu131+Ser-peptide	N	MS	Lys	Val	Ile	Glu	Ser	Arg	Ala	Gln	Vidmar et al., 2017
Tropomyosin alpha-3 chain	P06753		peptide-Glu165+Val-peptide	N	MS	Lys	Tyr	Glu	Glu	Val	Ala	Arg	Lys	Vidmar et al., 2017
Tropomyosin alpha-3 chain	P06753		peptide-Glu225+Ile-peptide	N	MS	Tyr	Glu	Glu	Glu	Ile	Lys	Ile	Leu	Vidmar et al., 2017
Tropomyosin alpha-3 chain	P06753		peptide-Glu244+Arg-peptide	N	MS	Glu	Phe	Ala	Glu	Arg	Ser	Val	Ala	Vidmar et al., 2017
Tropomyosin alpha-3 chain	P06753		peptide-Glu174+Gly-peptide	N	MS	Val	Ile	Ile	Glu	Gly	Asp	Leu	Glu	Vidmar et al., 2017
Tropomyosin alpha-3 chain	P06753		peptide-Glu85+Val-peptide	N	MS	Ala	Glu	Ala	Glu	Val	Ala	Ser	Leu	Vidmar et al., 2017
Tropomyosin alpha-3 chain	P06753		peptide-Glu17+Asn-peptide	N	MS	Leu	Asp	Lys	Glu	Asn	Ala	Leu	Asp	Vidmar et al., 2017
Tropomyosin alpha-3 chain	P06753		peptide-Glu132+Asn-peptide	N	MS	Lys	Val	Ile	Glu	Asn	Arg	Ala	Leu	Vidmar et al., 2017
Tropomyosin alpha-3 chain	P06753		peptide-Glu213+Lys-peptide	N	MS	Ala	Gln	Ala	Glu	Lys	Tyr	Ser	Gln	Vidmar et al., 2017
Tropomyosin alpha-4 chain	P67936		peptide-Glu207+Arg-peptide	N	MS	Glu	Phe	Ala	Glu	Arg	Thr	Val	Ala	Vidmar et al., 2017
Tropomyosin alpha-4 chain	P67936		peptide-Glu204+Phe-peptide	N	MS	Thr	Arg	Ala	Glu	Phe	Ala	Glu	Arg	Vidmar et al., 2017
Tropomyosin alpha-4 chain	P67936		peptide-Glu172+Ala-peptide	N	MS	Lys	Ser	Leu	Glu	Ala	Ala	Ser	Glu	Vidmar et al., 2017
Tropomyosin alpha-4 chain	P67936		peptide-Glu68+Arg-peptide	N	MS	Arg	Ala	Gln	Glu	Arg	Leu	Ala	Thr	Vidmar et al., 2017
Tropomyosin alpha-4 chain	P67936		peptide-Glu43+Lys-peptide	N	MS	Glu	Arg	Arg	Glu	Lys	Ala	Glu	Gly	Vidmar et al., 2017
Tropomyosin alpha-4 chain	P67936		peptide-Glu188+Ile-peptide	N	MS	Tyr	Glu	Glu	Glu	Ile	Lys	Leu	Leu	Vidmar et al., 2017
Tropomyosin alpha-4 chain	P67936		peptide-Glu222+Lys-peptide	N	MS	Asp	Leu	Glu	Glu	Lys	Leu	Ala	Gln	Vidmar et al., 2017
Tropomyosin alpha-4 chain	P67936		peptide-Glu139+Leu-peptide	N	MS	Leu	Glu	Gly	Glu	Leu	Glu	Arg	Ala	Vidmar et al., 2017
Tropomyosin alpha-4 chain	P67936		peptide-Glu46+Gly-peptide	N	MS	Glu	Lys	Ala	Glu	Gly	Asp	Val	Ala	Vidmar et al., 2017
Tropomyosin alpha-4 chain	P67936		peptide-Glu160+Leu-peptide	N	MS	Leu	Glu	Glu	Glu	Leu	Lys	Asn	Val	Vidmar et al., 2017
Tropomyosin alpha-4 chain	P67936		peptide-Glu79+Ala-peptide	N	MS	Lys	Leu	Glu	Glu	Ala	Glu	Lys	Ala	Vidmar et al., 2017
Tropomyosin alpha-4 chain	P67936		peptide-Glu230+Asn-peptide	N	MS	Ala	Lys	Glu	Glu	Asn	Val	Gly	Leu	Vidmar et al., 2017
Tropomyosin alpha-4 chain	P67936		peptide-Glu8+Ala-peptide	N	MS	Asn	Ser	Leu	Glu	Ala	Val	Lys	Arg	Vidmar et al., 2017
Tropomyosin alpha-4 chain	P67936		peptide-Asp48+Val-peptide	N	MS	Ala	Glu	Gly	Asp	Val	Ala	Ala	Leu	Vidmar et al., 2017
Tropomyosin alpha-4 chain	P67936		peptide-Glu176+Lys-peptide	N	MS	Ala	Ala	Ser	Glu	Lys	Tyr	Ser	Glu	Vidmar et al., 2017
Tropomyosin alpha-4 chain	P67936		peptide-Glu23+Ala-peptide	N	MS	Gln	Ala	Asp	Glu	Ala	Glu	Asp	Arg	Vidmar et al., 2017
Tropomyosin alpha-4 chain	P67936		peptide-Glu95+Asn-peptide	N	MS	Lys	Val	Ile	Glu	Asn	Arg	Ala	Met	Vidmar et al., 2017
Tropomyosin alpha-4 chain	P67936		peptide-Glu214+Lys-peptide	N	MS	Ala	Lys	Leu	Glu	Lys	Thr	Ile	Asp	Vidmar et al., 2017
tryptophanase	P0A853	1-471	peptide-Glu302+Gly-peptide	N	MS	Val	Val	Gln	Glu	Gly	Phe	Pro	Thr	Timmer et al., 2009
TSC22 domain family protein 1	Q15714		peptide-Glu1012+Leu-peptide	N	MS	Gln	Ile	Lys	Glu	Leu	Ile	Glu	Lys	Vidmar et al., 2017
TSC22 domain family protein 2	O75157		peptide-Glu47+Ile-peptide	N	MS	Val	Ser	Ser	Glu	Ile	Phe	Asp	Val	Vidmar et al., 2017
TSC22 domain family protein 2	O75157		peptide-Glu721+Arg-peptide	N	MS	Glu	Leu	Val	Glu	Arg	Asn	Ser	Leu	Vidmar et al., 2017
tubulin alpha-1 chain	Q5E986	1-448	peptide-Glu168+Phe-peptide	N		Ser	Lys	Leu	Glu	Phe	Ser	Ile	Tyr	de Pereda & Andreu, 1996
tubulin alpha-1 chain	Q5E986	1-448	peptide-Glu290+Ile-peptide	N		Ser	Val	Ala	Glu	Ile	Thr	Asn	Ala	de Pereda & Andreu, 1996
tubulin alpha-1A chain	Q71U36	2-40	peptide-Glu27+His-peptide	N	MS	Tyr	Cys	Leu	Glu	His	Gly	Ile	Gln	Schilling & Overall, 2008
tubulin alpha-1A chain	Q71U36	84-105	peptide-Glu90+Gln-peptide	N	MS	Phe	His	Pro	Glu	Gln	Leu	Ile	Thr	Schilling & Overall, 2008
Tubulin alpha-1A chain	Q71U36		peptide-Glu423+Asp-peptide	N	MS	Glu	Ala	Arg	Glu	Asp	Met	Ala	Ala	Vidmar et al., 2017
Tubulin alpha-1A chain	Q71U36		peptide-Glu279+Lys-peptide	N	MS	Ile	Ser	Ala	Glu	Lys	Ala	Tyr	His	Vidmar et al., 2017
Tubulin alpha-1A chain	Q71U36		peptide-Glu77+Val-peptide	N	MS	Val	Ile	Asp	Glu	Val	Arg	Thr	Gly	Vidmar et al., 2017
Tubulin alpha-1A chain	Q71U36		peptide-Glu55+Thr-peptide	N	MS	Phe	Phe	Ser	Glu	Thr	Gly	Ala	Gly	Vidmar et al., 2017
Tubulin alpha-1A chain	Q71U36		peptide-Glu415+Gly-peptide	N	MS	Gly	Met	Glu	Glu	Gly	Glu	Phe	Ser	Vidmar et al., 2017
Tubulin alpha-1A chain	Q71U36		peptide-Glu155+Arg-peptide	N	MS	Leu	Leu	Met	Glu	Arg	Leu	Ser	Val	Vidmar et al., 2017
tubulin alpha-1B chain	P68363	2-40	peptide-Glu27+His-peptide	N	MS	Tyr	Cys	Leu	Glu	His	Gly	Ile	Gln	Schilling & Overall, 2008
tubulin alpha-1B chain	P68363	84-105	peptide-Glu90+Gln-peptide	N	MS	Phe	His	Pro	Glu	Gln	Leu	Ile	Thr	Schilling & Overall, 2008
tubulin alpha-1C chain	Q9BQE3	2-40	peptide-Glu27+His-peptide	N	MS	Tyr	Cys	Leu	Glu	His	Gly	Ile	Gln	Schilling & Overall, 2008
tubulin alpha-1C chain	Q9BQE3	84-105	peptide-Glu90+Gln-peptide	N	MS	Phe	His	Pro	Glu	Gln	Leu	Ile	Thr	Schilling & Overall, 2008
tubulin alpha-3E chain	Q6PEY2	2-40	peptide-Glu27+His-peptide	N	MS	Tyr	Cys	Leu	Glu	His	Gly	Ile	Gln	Schilling & Overall, 2008
tubulin alpha-4A chain	P68366	2-40	peptide-Glu27+His-peptide	N	MS	Tyr	Cys	Leu	Glu	His	Gly	Ile	Gln	Schilling & Overall, 2008
tubulin alpha-4A chain	P68366	84-105	peptide-Glu90+Gln-peptide	N	MS	Phe	His	Pro	Glu	Gln	Leu	Ile	Thr	Schilling & Overall, 2008
Tubulin alpha-4A chain	P68366	1-448	peptide-Glu90+Gln-peptide	N	MS	Phe	His	Pro	Glu	Gln	Leu	Ile	Thr	Schilling & Overall, 2008
tubulin alpha-8 chain	Q9NY65	84-105	peptide-Glu90+Gln-peptide	N	MS	Phe	His	Pro	Glu	Gln	Leu	Ile	Thr	Schilling & Overall, 2008
tubulin beta chain	P07437	2-19	E+IVHIQAGQCGNQIGAK	N	MS	-	-	-	Glu	Ile	Val	His	Ile	Schilling & Overall, 2008
tubulin beta chain	P07437	223-241	D+LNHLVSATMSGVTTCLR	N	MS	-	-	-	Asp	Leu	Asn	His	Leu	Schilling & Overall, 2008
tubulin beta chain	P07437	282-297	ALTVPE+LTQQVFDAK	N	MS	Thr	Val	Pro	Glu	Leu	Thr	Gln	Gln	Schilling & Overall, 2008
tubulin beta chain	P07437	103-121	GHYTEGAE+LVDSVLDVVR	N	MS	Glu	Gly	Ala	Glu	Leu	Val	Asp	Ser	Schilling & Overall, 2008
tubulin beta chain	P07437	122-154	peptide-Gly144+Ser-peptide	N	MS	Gly	Gly	Thr	Gly	Ser	Gly	Met	Gly	Schilling & Overall, 2008
tubulin beta chain	P07437	103-121	GHYTE+GAELVDSVLDVVR	N	MS	His	Tyr	Thr	Glu	Gly	Ala	Glu	Leu	Schilling & Overall, 2008
tubulin beta chain	P07437	1-444	peptide-Glu198+Thr-peptide	N	MS	Asn	Thr	Asp	Glu	Thr	Tyr	Cys	Ile	Schilling & Overall, 2008
Tubulin beta chain	P07437		peptide-Glu53+Ala-peptide	N	MS	Tyr	Tyr	Asn	Glu	Ala	Thr	Gly	Gly	Vidmar et al., 2017
Tubulin beta chain	P07437		peptide-Glu27+His-peptide	N	MS	Ile	Ser	Asp	Glu	His	Gly	Ile	Asp	Vidmar et al., 2017
tubulin beta-2A chain	Q13885	2-19	E+IVHIQAGQCGNQIGAK	N	MS	-	-	-	Glu	Ile	Val	His	Ile	Schilling & Overall, 2008
tubulin beta-2A chain	Q13885	223-241	D+LNHLVSATMSGVTTCLR	N	MS	-	-	-	Asp	Leu	Asn	His	Leu	Schilling & Overall, 2008
tubulin beta-2A chain	Q13885	282-297	ALTVPE+LTQQMFDSK	N	MS	Thr	Val	Pro	Glu	Leu	Thr	Gln	Gln	Schilling & Overall, 2008
tubulin beta-2A chain	Q13885	103-121	GHYTEGAE+LVDSVLDVVR	N	MS	Glu	Gly	Ala	Glu	Leu	Val	Asp	Ser	Schilling & Overall, 2008
tubulin beta-2A chain	Q13885	122-154	peptide-Gly144+Ser-peptide	N	MS	Gly	Gly	Thr	Gly	Ser	Gly	Met	Gly	Schilling & Overall, 2008
tubulin beta-2A chain	Q13885	103-121	GHYTE+GAELVDSVLDVVR	N	MS	His	Tyr	Thr	Glu	Gly	Ala	Glu	Leu	Schilling & Overall, 2008
tubulin beta-2A chain	Q13885	1-445	peptide-Glu198+Thr-peptide	N	MS	Asn	Thr	Asp	Glu	Thr	Tyr	Ser	Ile	Schilling & Overall, 2008
tubulin beta-2B chain	Q9BVA1	2-19	E+IVHIQAGQCGNQIGAK	N	MS	-	-	-	Glu	Ile	Val	His	Ile	Schilling & Overall, 2008
tubulin beta-2B chain	Q9BVA1	223-241	D+LNHLVSATMSGVTTCLR	N	MS	-	-	-	Asp	Leu	Asn	His	Leu	Schilling & Overall, 2008
tubulin beta-2B chain	Q9BVA1	282-297	ALTVPE+LTQQMFDSK	N	MS	Thr	Val	Pro	Glu	Leu	Thr	Gln	Gln	Schilling & Overall, 2008
tubulin beta-2B chain	Q9BVA1	103-121	GHYTEGAE+LVDSVLDVVR	N	MS	Glu	Gly	Ala	Glu	Leu	Val	Asp	Ser	Schilling & Overall, 2008
tubulin beta-2B chain	Q9BVA1	122-154	peptide-Gly144+Ser-peptide	N	MS	Gly	Gly	Thr	Gly	Ser	Gly	Met	Gly	Schilling & Overall, 2008
tubulin beta-2B chain	Q9BVA1	103-121	GHYTE+GAELVDSVLDVVR	N	MS	His	Tyr	Thr	Glu	Gly	Ala	Glu	Leu	Schilling & Overall, 2008
tubulin beta-2B chain	Q9BVA1	1-445	peptide-Glu198+Thr-peptide	N	MS	Asn	Thr	Asp	Glu	Thr	Tyr	Cys	Ile	Schilling & Overall, 2008
tubulin beta-2C chain	P68371	19-46	peptide-Glu27+His-peptide	N	MS	Ile	Ser	Asp	Glu	His	Gly	Ile	Asp	Schilling & Overall, 2008
tubulin beta-2C chain	P68371	223-241	D+LNHLVSATMSGVTTCLR	N	MS	-	-	-	Asp	Leu	Asn	His	Leu	Schilling & Overall, 2008
tubulin beta-2C chain	P68371	103-121	GHYTEGAE+LVDSVLDVVR	N	MS	Glu	Gly	Ala	Glu	Leu	Val	Asp	Ser	Schilling & Overall, 2008
tubulin beta-2C chain	P68371	122-154	peptide-Gly144+Ser-peptide	N	MS	Gly	Gly	Thr	Gly	Ser	Gly	Met	Gly	Schilling & Overall, 2008
tubulin beta-2C chain	P68371	103-121	GHYTE+GAELVDSVLDVVR	N	MS	His	Tyr	Thr	Glu	Gly	Ala	Glu	Leu	Schilling & Overall, 2008
tubulin beta-2C chain	P68371	19-46	peptide-Glu22+Val-peptide	N	MS	-	Phe	Trp	Glu	Val	Ile	Ser	Asp	Schilling & Overall, 2008
tubulin beta-2C chain	P68371	1-445	peptide-Glu198+Thr-peptide	N	MS	Asn	Thr	Asp	Glu	Thr	Tyr	Cys	Ile	Schilling & Overall, 2008
tubulin beta-3 chain	Q13509	2-19	E+IVHIQAGQCGNQIGAK	N	MS	-	-	-	Glu	Ile	Val	His	Ile	Schilling & Overall, 2008
tubulin beta-3 chain	Q13509	103-121	GHYTEGAE+LVDSVLDVVR	N	MS	Glu	Gly	Ala	Glu	Leu	Val	Asp	Ser	Schilling & Overall, 2008
tubulin beta-3 chain	Q13509	122-154	peptide-Gly144+Ser-peptide	N	MS	Gly	Gly	Thr	Gly	Ser	Gly	Met	Gly	Schilling & Overall, 2008
tubulin beta-3 chain	Q13509	103-121	GHYTE+GAELVDSVLDVVR	N	MS	His	Tyr	Thr	Glu	Gly	Ala	Glu	Leu	Schilling & Overall, 2008
tubulin beta-4 chain	P04350	19-46	peptide-Glu27+His-peptide	N	MS	Ile	Ser	Asp	Glu	His	Gly	Ile	Asp	Schilling & Overall, 2008
tubulin beta-4 chain	P04350	223-241	D+LNHLVSATMSGVTTCLR	N	MS	-	-	-	Asp	Leu	Asn	His	Leu	Schilling & Overall, 2008
tubulin beta-4 chain	P04350	122-154	peptide-Gly144+Ser-peptide	N	MS	Gly	Gly	Thr	Gly	Ser	Gly	Met	Gly	Schilling & Overall, 2008
tubulin beta-4 chain	P04350	19-46	peptide-Glu22+Val-peptide	N	MS	-	Phe	Trp	Glu	Val	Ile	Ser	Asp	Schilling & Overall, 2008
tubulin beta-4 chain	P04350	1-444	peptide-Glu198+Thr-peptide	N	MS	Asn	Thr	Asp	Glu	Thr	Tyr	Cys	Ile	Schilling & Overall, 2008
Tubulin beta-4A chain	P04350	104-121	GHYTEGAE+LVDAVLDVVR	N	MS	Glu	Gly	Ala	Glu	Leu	Val	Asp	Ala	Schilling & Overall, 2008
Tubulin beta-4A chain	P04350	104-121	GHYTE+GAELVDSVLDVVR	N	MS	His	Tyr	Thr	Glu	Gly	Ala	Glu	Leu	Schilling & Overall, 2008
Tubulin beta-4B chain	P68371		peptide-Glu53+Ala-peptide	N	MS	Tyr	Tyr	Asn	Glu	Ala	Thr	Gly	Gly	Vidmar et al., 2017
Tubulin beta-4B chain	P68371		peptide-Glu421+Tyr-peptide	N	MS	Leu	Val	Ser	Glu	Tyr	Gln	Gln	Tyr	Vidmar et al., 2017
Tubulin beta-4B chain	P68371		peptide-Gly93+Gln-peptide	N	MS	Phe	Val	Phe	Gly	Gln	Ser	Gly	Ala	Vidmar et al., 2017
Tubulin beta-4B chain	P68371		peptide-Glu45+Arg-peptide	N	MS	Leu	Gln	Leu	Glu	Arg	Ile	Asn	Val	Vidmar et al., 2017
Tubulin beta-4B chain	P68371		peptide-Glu69+Pro-peptide	N	MS	Val	Asp	Leu	Glu	Pro	Gly	Thr	Met	Vidmar et al., 2017
tubulin beta-6 chain	Q9BUF5	122-154	peptide-Gly144+Ser-peptide	N	MS	Gly	Gly	Thr	Gly	Ser	Gly	Met	Gly	Schilling & Overall, 2008
tubulin beta-6 chain	Q9BUF5	1-446	peptide-Glu198+Thr-peptide	N	MS	Asn	Thr	Asp	Glu	Thr	Tyr	Cys	Ile	Schilling & Overall, 2008
tubulin beta-8 chain	Q3ZCM7	223-241	D+LNHLVSATMSGVTTCLR	N	MS	-	-	-	Asp	Leu	Asn	His	Leu	Schilling & Overall, 2008
Tubulin beta-8 chain	Q3ZCM7		peptide-Glu123+Ala-peptide	N	MS	Val	Arg	Lys	Glu	Ala	Glu	Ser	Cys	Vidmar et al., 2017
tubulin beta-8 chain B	A6NNZ2	223-241	D+LNHLVSATMSGVTTCLR	N	MS	-	-	-	Asp	Leu	Asn	His	Leu	Schilling & Overall, 2008
tubulin beta-8 chain B	A6NNZ2	122-154	peptide-Gly144+Ser-peptide	N	MS	Gly	Gly	Thr	Gly	Ser	Gly	Met	Gly	Schilling & Overall, 2008
tubulin, beta, 4 variant	Q53G92	103-121	GHYTEGAE+LVDSVLDVVR	N	MS	Glu	Gly	Ala	Glu	Leu	Val	Asp	Ser	Schilling & Overall, 2008
tubulin, beta, 4 variant	Q53G92	122-154	peptide-Gly144+Ser-peptide	N	MS	Gly	Gly	Thr	Gly	Ser	Gly	Met	Gly	Schilling & Overall, 2008
tubulin, beta, 4 variant	Q53G92	103-121	GHYTE+GAELVDSVLDVVR	N	MS	His	Tyr	Thr	Glu	Gly	Ala	Glu	Leu	Schilling & Overall, 2008
tubulin--tyrosine ligase-like protein 12	Q14166	14-40	peptide-Glu30+Phe-peptide	N	MS	Ala	Leu	Ala	Glu	Phe	Ala	Ala	Leu	Schilling & Overall, 2008
Tubulin-folding cofactor B	Q99426		peptide-Glu112+Ala-peptide	N	MS	Ile	Ser	Gln	Glu	Ala	Tyr	Asp	Gln	Vidmar et al., 2017
Tubulin-folding cofactor B	Q99426		peptide-Glu97+Tyr-peptide	N	MS	Arg	Leu	Gly	Glu	Tyr	Glu	Asp	Val	Vidmar et al., 2017
Tubulin-folding cofactor B	Q99426		peptide-Glu152+Lys-peptide	N	MS	Leu	Ala	Glu	Glu	Lys	Ala	Gln	Ala	Vidmar et al., 2017
Tubulin-specific chaperone A	O75347		peptide-Glu35+Lys-peptide	N	MS	Gln	Gln	Glu	Glu	Lys	Ile	Glu	Lys	Vidmar et al., 2017
Tubulin-specific chaperone A	O75347		peptide-Glu38+Lys-peptide	N	MS	Glu	Lys	Ile	Glu	Lys	Met	Arg	Ala	Vidmar et al., 2017
Tubulin-specific chaperone A	O75347		peptide-Glu72+Ala-peptide	N	MS	Arg	Arg	Leu	Glu	Ala	Ala	Tyr	Leu	Vidmar et al., 2017
Tubulin-specific chaperone A	O75347		peptide-Glu59+Ser-peptide	N	MS	Ile	Leu	Gln	Glu	Ser	Arg	Met	Met	Vidmar et al., 2017
Tubulin-specific chaperone A	O75347		peptide-Glu46+Asn-peptide	N	MS	Glu	Asp	Gly	Glu	Asn	Tyr	Asp	Ile	Vidmar et al., 2017
Tubulin-specific chaperone A	O75347		peptide-Glu83+Asn-peptide	N	MS	Arg	Ile	Leu	Glu	Asn	Glu	Lys	Asp	Vidmar et al., 2017
Tubulin-specific chaperone C	Q15814		peptide-Glu39+Val-peptide	N	MS	Arg	Gln	Leu	Glu	Val	Glu	Arg	Arg	Vidmar et al., 2017
Tubulin-specific chaperone C	Q15814		peptide-Glu27+Arg-peptide	N	MS	Leu	Val	Pro	Glu	Arg	Leu	Gln	Arg	Vidmar et al., 2017
Tumor protein D52	P55327	1-224	peptide-Glu166+Asp-peptide	N	MS	Lys	Lys	Leu	Glu	Asp	Val	Lys	Asn	Schilling & Overall, 2008
Tumor protein D52	P55327	1-224	peptide-Glu141+Thr-peptide	N	MS	Lys	Thr	Ser	Glu	Thr	Leu	Ser	Gln	Schilling & Overall, 2008
Tumor protein D52	P55327		peptide-Glu182+Asn-peptide	N	MS	Glu	Lys	Val	Glu	Asn	Leu	Lys	Ser	Vidmar et al., 2017
Tumor protein D52	P55327		peptide-Glu89+Ile-peptide	N	MS	Val	Glu	Glu	Glu	Ile	Gln	Thr	Leu	Vidmar et al., 2017
tumor protein D52 isoform 2	P55327-2	45-60	VEEE+IQTLSQVLAAK	N	MS	Val	Glu	Glu	Glu	Ile	Gln	Thr	Leu	Schilling & Overall, 2008
Tumor protein D52 isoform 3	P55327-3	1-248	peptide-Glu190+Asp-peptide	N	MS	Lys	Lys	Leu	Glu	Asp	Val	Lys	Asn	Schilling & Overall, 2008
Tumor protein D52 isoform 3	P55327-3	1-248	peptide-Glu165+Thr-peptide	N	MS	Lys	Thr	Ser	Glu	Thr	Leu	Ser	Gln	Schilling & Overall, 2008
Tumor protein D54	O43399		peptide-Glu118+Lys-peptide	N	MS	Glu	Trp	Asn	Glu	Lys	Val	Thr	Gln	Vidmar et al., 2017
Tumor protein D54	O43399		peptide-Glu59+Ile-peptide	N	MS	Val	Glu	Glu	Glu	Ile	Val	Thr	Leu	Vidmar et al., 2017
TXNDC5 protein	Q86UY0	1-360	peptide-Glu75+Ala-peptide	N	MS	Pro	Gly	Gln	Glu	Ala	Val	Lys	Tyr	Schilling & Overall, 2008
tyrosine-protein kinase receptor	Q8TDJ5	1-803	peptide-Glu176+Ile-peptide	N	MS	Asn	Gln	Asp	Glu	Ile	Asn	Lys	Asn	Schilling & Overall, 2008
Tyrosine-protein kinase receptor UFO	P30530		peptide-Glu787+Leu-peptide	N	MS	Arg	Cys	Trp	Glu	Leu	Asn	Pro	Gln	Vidmar et al., 2017
Tyrosine-protein phosphatase non-receptor type 1	P18031		peptide-Glu6+Phe-peptide	N	MS	Met	Glu	Lys	Glu	Phe	Glu	Gln	Ile	Vidmar et al., 2017
tyrosine-protein phosphatase non-receptor type 23	Q9H3S7	1-1636	peptide-Asp1621+Asp-peptide	N	MS	Arg	Pro	Ser	Asp	Asp	Pro	Leu	Ser	Schilling & Overall, 2008
tyrosyl-tRNA synthetase, cytoplasmic	P54577	374-391	IITVE+KHPDADSLYVEK	N	MS	Ile	Thr	Val	Glu	Lys	His	Pro	Asp	Schilling & Overall, 2008
tyrosyl-tRNA synthetase, cytoplasmic	P54577	272-282	SE+FVILRDEK	N	MS	-	-	Ser	Glu	Phe	Val	Ile	Leu	Schilling & Overall, 2008
tyrosyl-tRNA synthetase, cytoplasmic	P54577	2-528	peptide-Glu414+Leu-peptide	N	MS	Pro	Lys	Glu	Glu	Leu	Gln	Asp	Arg	Schilling & Overall, 2008
U1 small nuclear ribonucleoprotein 70 kDa	P08621		peptide-Glu47+Phe-peptide	N	MS	Tyr	Ile	Arg	Glu	Phe	Glu	Asp	Pro	Vidmar et al., 2017
U1 small nuclear ribonucleoprotein A	P09012	1-20	AVPE+TRPNHTIYINNLNEK	N	MS	Ala	Val	Pro	Glu	Thr	Arg	Pro	Asn	Schilling & Overall, 2008
U1 small nuclear ribonucleoprotein A	P09012	2-282	peptide-Glu236+Val-peptide	N	MS	Gly	Phe	Lys	Glu	Val	Arg	Leu	Val	Schilling & Overall, 2008
U4/U6.U5 tri-snRNP-associated protein 1	O43290		peptide-Glu533+Ser-peptide	N	MS	Lys	Lys	Leu	Glu	Ser	Arg	Gln	Arg	Vidmar et al., 2017
U4/U6.U5 tri-snRNP-associated protein 1	O43290		peptide-Glu12+Ala-peptide	N	MS	Gly	Glu	Lys	Glu	Ala	Ala	Gly	Thr	Vidmar et al., 2017
U6 snRNA-associated Sm-like protein LSm4	Q9Y4Z0		peptide-Glu42+Val-peptide	N	MS	Asn	Leu	Arg	Glu	Val	Ile	Cys	Thr	Vidmar et al., 2017
U6 snRNA-associated Sm-like protein LSm7	Q9UK45		peptide-Glu10+Ser-peptide	N	MS	Lys	Lys	Lys	Glu	Ser	Ile	Leu	Asp	Vidmar et al., 2017
U6 snRNA-associated Sm-like protein LSm8	O95777		peptide-Glu76+Thr-peptide	N	MS	Ile	Asp	Glu	Glu	Thr	Asp	Ser	Ala	Vidmar et al., 2017
Ubiquilin-1	Q9UMX0		peptide-Glu224+Ile-peptide	N	MS	Arg	Asn	Pro	Glu	Ile	Ser	His	Met	Vidmar et al., 2017
Ubiquilin-1	Q9UMX0		peptide-Glu250+Met-peptide	N	MS	Met	Met	Gln	Glu	Met	Met	Arg	Asn	Vidmar et al., 2017
Ubiquilin-1	Q9UMX0		peptide-Glu240+Leu-peptide	N	MS	Gln	Thr	Leu	Glu	Leu	Ala	Arg	Asn	Vidmar et al., 2017
ubiquitin	P62988	11-27	TITLE+VEPSDTIENVK	N	MS	Ile	Thr	Leu	Glu	Val	Glu	Pro	Ser	Schilling & Overall, 2008
ubiquitin	P62988	1-76	peptide-Glu51+Asp-peptide	N	MS	Lys	Gln	Leu	Glu	Asp	Gly	Arg	Thr	Schilling & Overall, 2008
ubiquitin	P62988	1-76	peptide-Glu64+Ser-peptide	N	MS	Ile	Gln	Lys	Glu	Ser	Thr	Leu	His	Schilling & Overall, 2008
Ubiquitin carboxyl-terminal hydrolase 5	P45974		peptide-Glu7+Ala-peptide	N	MS	Leu	Ser	Glu	Glu	Ala	Leu	Leu	Ser	Vidmar et al., 2017
Ubiquitin carboxyl-terminal hydrolase 5	P45974		peptide-Glu130+Ile-peptide	N	MS	Asp	Tyr	Leu	Glu	Ile	Ala	Arg	Asp	Vidmar et al., 2017
Ubiquitin carboxyl-terminal hydrolase 5	P45974		peptide-Glu438+Phe-peptide	N	MS	Asp	Ala	Gln	Glu	Phe	Phe	Leu	His	Vidmar et al., 2017
Ubiquitin carboxyl-terminal hydrolase 5	P45974		peptide-Glu427+Phe-peptide	N	MS	Gly	His	Pro	Glu	Phe	Ser	Thr	Asn	Vidmar et al., 2017
Ubiquitin carboxyl-terminal hydrolase 5	P45974		peptide-Glu297+Ile-peptide	N	MS	Thr	Glu	Leu	Glu	Ile	Asp	Met	Asn	Vidmar et al., 2017
Ubiquitin carboxyl-terminal hydrolase 5	P45974		peptide-Glu521+Leu-peptide	N	MS	Ala	Leu	Pro	Glu	Leu	Val	Arg	Ala	Vidmar et al., 2017
Ubiquitin carboxyl-terminal hydrolase isozyme L3	P15374		peptide-Glu182+Leu-peptide	N	MS	His	Leu	Tyr	Glu	Leu	Asp	Gly	Arg	Vidmar et al., 2017
Ubiquitin carboxyl-terminal hydrolase isozyme L3	P15374		peptide-Glu164+Lys-peptide	N	MS	Ser	Ile	Asp	Glu	Lys	Val	Asp	Leu	Vidmar et al., 2017
Ubiquitin carboxyl-terminal hydrolase isozyme L3	P15374		peptide-Glu114+Ser-peptide	N	MS	Met	His	Phe	Glu	Ser	Gly	Ser	Thr	Vidmar et al., 2017
Ubiquitin carboxyl-terminal hydrolase isozyme L3	P15374		peptide-Glu63+Val-peptide	N	MS	Glu	Lys	Tyr	Glu	Val	Phe	Arg	Thr	Vidmar et al., 2017
Ubiquitin carboxyl-terminal hydrolase isozyme L3	P15374		peptide-Glu125+Ser-peptide	N	MS	Phe	Leu	Glu	Glu	Ser	Val	Ser	Met	Vidmar et al., 2017
Ubiquitin carboxyl-terminal hydrolase isozyme L3	P15374		peptide-Glu139+Asn-peptide	N	MS	Arg	Tyr	Leu	Glu	Asn	Tyr	Asp	Ala	Vidmar et al., 2017
Ubiquitin thioesterase OTUB1	Q96FW1		peptide-Glu40+Ile-peptide	N	MS	Ile	Gln	Gln	Glu	Ile	Ala	Val	Gln	Vidmar et al., 2017
Ubiquitin thioesterase OTUB1	Q96FW1		peptide-Glu28+Ala-peptide	N	MS	Ala	Tyr	Asp	Glu	Ala	Ile	Met	Ala	Vidmar et al., 2017
Ubiquitin-40S ribosomal protein S27a	P62979		peptide-Glu24+Asn-peptide	N	MS	Asp	Thr	Ile	Glu	Asn	Val	Lys	Ala	Vidmar et al., 2017
Ubiquitin-40S ribosomal protein S27a	P62979		peptide-Glu125+Cys-peptide	N	MS	Pro	Ser	Asp	Glu	Cys	Gly	Ala	Gly	Vidmar et al., 2017
Ubiquitin-40S ribosomal protein S27a	P62979		peptide-Glu110+Asn-peptide	N	MS	Lys	Val	Asp	Glu	Asn	Gly	Lys	Ile	Vidmar et al., 2017
Ubiquitin-40S ribosomal protein S27a	P62979		peptide-Glu51+Asp-peptide	N	MS	Lys	Gln	Leu	Glu	Asp	Gly	Arg	Thr	Vidmar et al., 2017
Ubiquitin-conjugating enzyme E2 C	O00762		peptide-Glu168+Thr-peptide	N	MS	Tyr	Leu	Gln	Glu	Thr	Tyr	Ser	Lys	Vidmar et al., 2017
Ubiquitin-conjugating enzyme E2 D2	P62837		peptide-Glu122+Ile-peptide	N	MS	Leu	Val	Pro	Glu	Ile	Ala	Arg	Ile	Vidmar et al., 2017
Ubiquitin-conjugating enzyme E2 D3	P61077		peptide-Glu122+Ile-peptide	N	MS	Leu	Val	Pro	Glu	Ile	Ala	Arg	Ile	Vidmar et al., 2017
Ubiquitin-conjugating enzyme E2 E1	P51965		peptide-Glu33+Ser-peptide	N	MS	Lys	Lys	Lys	Glu	Ser	Lys	Val	Ser	Vidmar et al., 2017
Ubiquitin-conjugating enzyme E2 E2	Q96LR5		peptide-Glu25+Ser-peptide	N	MS	Asp	Gln	Arg	Glu	Ser	Val	Gln	Gln	Vidmar et al., 2017
Ubiquitin-conjugating enzyme E2 K	P61086		peptide-Glu21+Thr-peptide	N	MS	Lys	Ser	Glu	Glu	Thr	Ser	Lys	Asn	Vidmar et al., 2017
Ubiquitin-conjugating enzyme E2 K	P61086		peptide-Glu42+Ile-peptide	N	MS	Leu	Arg	Gly	Glu	Ile	Ala	Gly	Pro	Vidmar et al., 2017
ubiquitin-conjugating enzyme E2 L3	P68036	1-154	peptide-Glu128+Tyr-peptide	N	MS	Leu	Ala	Glu	Glu	Tyr	Ser	Lys	Asp	Schilling & Overall, 2008
ubiquitin-conjugating enzyme E2 L3	P68036	1-154	peptide-Glu54+Ile-peptide	N	MS	Phe	Arg	Ile	Glu	Ile	Asn	Phe	Pro	Schilling & Overall, 2008
ubiquitin-conjugating enzyme E2 L3	P68036	1-154	peptide-Asp124+Leu-peptide	N	MS	Leu	Arg	Ala	Asp	Leu	Ala	Glu	Glu	Schilling & Overall, 2008
Ubiquitin-conjugating enzyme E2 L3	P68036		peptide-Glu29+Ala-peptide	N	MS	Gln	Val	Asp	Glu	Ala	Asn	Leu	Leu	Vidmar et al., 2017
Ubiquitin-conjugating enzyme E2 L3	P68036		peptide-Glu81+Lys-peptide	N	MS	Asn	Ile	Asp	Glu	Lys	Gly	Gln	Val	Vidmar et al., 2017
Ubiquitin-conjugating enzyme E2 L3	P68036		peptide-Glu13+Ile-peptide	N	MS	Glu	Leu	Glu	Glu	Ile	Arg	Lys	Cys	Vidmar et al., 2017
Ubiquitin-conjugating enzyme E2 L3	P68036		peptide-Glu142+Phe-peptide	N	MS	Asn	Ala	Glu	Glu	Phe	Thr	Lys	Lys	Vidmar et al., 2017
Ubiquitin-conjugating enzyme E2 N	P61088		peptide-Glu138+Thr-peptide	N	MS	Gln	Ala	Ile	Glu	Thr	Ala	Arg	Ala	Vidmar et al., 2017
ubiquitin-conjugating enzyme E2 O	Q9C0C9	1213-1235	peptide-Glu1221+Thr-peptide	N	MS	Gln	Thr	Ser	Glu	Thr	Ala	Pro	Asp	Schilling & Overall, 2008
Ubiquitin-conjugating enzyme E2 variant 1	Q13404		peptide-Glu132+Asn-peptide	N	MS	Met	Ser	Lys	Glu	Asn	Met	Lys	Leu	Vidmar et al., 2017
Ubiquitin-conjugating enzyme E2 variant 1	Q13404		peptide-Glu61+Asn-peptide	N	MS	Thr	Ile	Tyr	Glu	Asn	Arg	Ile	Tyr	Vidmar et al., 2017
Ubiquitin-conjugating enzyme E2 variant 2	Q15819		peptide-Glu130+Asn-peptide	N	MS	Met	Ser	Lys	Glu	Asn	Met	Lys	Leu	Vidmar et al., 2017
ubiquitin-like modifier-activating enzyme 1	P22314	350-368	NEEDAAE+LVALAQAVNAR	N	MS	Asp	Ala	Ala	Glu	Leu	Val	Ala	Leu	Schilling & Overall, 2008
ubiquitin-like modifier-activating enzyme 1	P22314	649-671	peptide-Glu653+Gly-peptide	N	MS	Asp	Glu	Phe	Glu	Gly	Leu	Phe	Lys	Schilling & Overall, 2008
ubiquitin-like modifier-activating enzyme 1	P22314	1-1058	peptide-Glu642+His-peptide	N	MS	Asn	Ala	Ile	Glu	His	Thr	Leu	Gln	Schilling & Overall, 2008
ubiquitin-like modifier-activating enzyme 1	P22314	1-1058	peptide-Glu237+Ala-peptide	N	MS	Cys	Leu	Asp	Glu	Ala	Arg	His	Gly	Schilling & Overall, 2008
ubiquitin-like modifier-activating enzyme 1	P22314	1-1058	peptide-Glu1009+Arg-peptide	N	MS	Lys	Leu	Lys	Glu	Arg	Leu	Asp	Gln	Schilling & Overall, 2008
Ubiquitin-like modifier-activating enzyme 1	P22314		peptide-Glu798+Phe-peptide	N	MS	Gln	Val	Pro	Glu	Phe	Thr	Pro	Lys	Vidmar et al., 2017
Ubiquitin-like modifier-activating enzyme 1	P22314		peptide-Glu813+Leu-peptide	N	MS	Ser	Asp	Gln	Glu	Leu	Gln	Ser	Ala	Vidmar et al., 2017
Ubiquitin-like modifier-activating enzyme 1	P22314		peptide-Glu597+Ser-peptide	N	MS	Pro	Leu	Leu	Glu	Ser	Gly	Thr	Leu	Vidmar et al., 2017
ubiquitinyl hydrolase-L1	P09936	1-223	peptide-Glu60+Asn-peptide	N	MS	Ala	Gln	His	Glu	Asn	Phe	Arg	Lys	Schilling & Overall, 2008
ubiquitinyl hydrolase-L1	P09936	1-223	peptide-Glu109+Asp-peptide	N	MS	Leu	Gly	Phe	Glu	Asp	Gly	Ser	Val	Schilling & Overall, 2008
ubiquitinyl hydrolase-L1	P09936	1-223	peptide-Glu120+Thr-peptide	N	MS	Phe	Leu	Ser	Glu	Thr	Glu	Lys	Met	Schilling & Overall, 2008
ubiquitinyl hydrolase-L1	P09936	1-223	peptide-Glu37+Ser-peptide	N	MS	Leu	Glu	Glu	Glu	Ser	Leu	Gly	Ser	Schilling & Overall, 2008
ubiquitinyl hydrolase-L3	P15374	145-165	VTHE+TSAHEGQTEAPSIDEK	N	MS	Val	Thr	His	Glu	Thr	Ser	Ala	His	Schilling & Overall, 2008
UBX domain-containing protein 1	Q04323		peptide-Glu280+Leu-peptide	N	MS	Pro	Leu	Gln	Glu	Leu	Gly	Leu	Val	Vidmar et al., 2017
UBX domain-containing protein 1	Q04323		peptide-Glu100+Leu-peptide	N	MS	Arg	Met	Leu	Glu	Leu	Val	Ala	Gln	Vidmar et al., 2017
UBX domain-containing protein 1	Q04323		peptide-Glu142+Met-peptide	N	MS	Gln	Glu	Asp	Glu	Met	Arg	Arg	Ala	Vidmar et al., 2017
UBX domain-containing protein 1	Q04323		peptide-Glu130+Leu-peptide	N	MS	Gln	Gly	Gln	Glu	Leu	Ser	Ala	Ala	Vidmar et al., 2017
UDP-glucose 4-epimerase	Q14376		peptide-Glu331+Asp-peptide	N	MS	Arg	Met	Cys	Glu	Asp	Leu	Trp	Arg	Vidmar et al., 2017
UDP-glucose 4-epimerase	Q14376		peptide-Glu54+Leu-peptide	N	MS	Arg	Val	Gln	Glu	Leu	Thr	Gly	Arg	Vidmar et al., 2017
UDP-glucose:glycoprotein glucosyltransferase 1	Q9NYU2		peptide-Glu1539+Lys-peptide	N	MS	Leu	Tyr	Lys	Glu	Lys	Thr	Lys	Glu	Vidmar et al., 2017
UMP-CMP kinase	P30085		peptide-Glu168+Met-peptide	N	MS	Leu	Tyr	Glu	Glu	Met	Gly	Lys	Val	Vidmar et al., 2017
UMP-CMP kinase	P30085		peptide-Glu146+Ser-peptide	N	MS	Asp	Asn	Arg	Glu	Ser	Leu	Glu	Lys	Vidmar et al., 2017
UMP-CMP kinase	P30085		peptide-Glu59+Gly-peptide	N	MS	Tyr	Ile	Lys	Glu	Gly	Lys	Ile	Val	Vidmar et al., 2017
UMP-CMP kinase	P30085		peptide-Glu133+Arg-peptide	N	MS	Arg	Cys	Leu	Glu	Arg	Gly	Lys	Ser	Vidmar et al., 2017
uncharacterized ABC transporter ATP-binding protein yjjK	P0A9W3	2-555	peptide-Glu384+Thr-peptide	N	MS	Thr	Leu	Gly	Glu	Thr	Val	Lys	Leu	Timmer et al., 2009
uncharacterized ABC transporter ATP-binding protein yjjK	P0A9W3	2-555	peptide-Glu407+Val-peptide	N	MS	Val	Trp	Glu	Glu	Val	Ser	Gly	Gly	Timmer et al., 2009
uncharacterized oxidoreductase yajO	P77735	1-324	peptide-Glu234+Val-peptide	N	MS	Val	Ser	Asp	Glu	Val	Gly	Lys	Asn	Timmer et al., 2009
uncharacterized potential DNA-binding protein C17orf49	Q8IXM2	7-21	VGE+IFSAAGAAFTK	N	MS	-	Val	Gly	Glu	Ile	Phe	Ser	Ala	Schilling & Overall, 2008
uncharacterized protein ATP2A2	A6NDN7	436-451	VGEATE+TALTCLVEK	N	MS	Glu	Ala	Thr	Glu	Thr	Ala	Leu	Thr	Schilling & Overall, 2008
uncharacterized protein ATP2A2	A6NDN7	143-164	peptide-Glu152+Ile-peptide	N	MS	Asp	Ile	Val	Glu	Ile	Ala	Val	Gly	Schilling & Overall, 2008
uncharacterized protein C11orf73	Q53FT3	1-197	peptide-Glu20+Asp-peptide	N	MS	Gln	Val	Ala	Glu	Asp	Lys	Phe	Val	Schilling & Overall, 2008
uncharacterized protein C17orf25	Q9Y3E8	1-504	peptide-Glu391+Leu-peptide	N	MS	Cys	Lys	Leu	Glu	Leu	Gln	Gly	Val	Schilling & Overall, 2008
Uncharacterized protein C1orf50	Q9BV19		peptide-Glu15+Arg-peptide	N	MS	Gly	Val	Leu	Glu	Arg	Gln	Gly	Ala	Vidmar et al., 2017
uncharacterized protein CCT6A	P40227-2	1-486	peptide-Glu147+Ile-peptide	N	MS	Phe	Met	Ile	Glu	Ile	Met	Glu	Met	Schilling & Overall, 2008
uncharacterized protein ENSP00000329640	A6NMY6	10-28	LSLE+GDHSTPPSAYGSVK	N	MS	Leu	Ser	Leu	Glu	Gly	Asp	His	Ser	Schilling & Overall, 2008
uncharacterized protein ENSP00000329640	A6NMY6	2-339	peptide-Glu96+Thr-peptide	N	MS	Gly	His	Leu	Glu	Thr	Val	Ile	Leu	Schilling & Overall, 2008
uncharacterized protein LOC391356	Q6GMV3	1-140	peptide-Glu128+Val-peptide	N	MS	Pro	Lys	Glu	Glu	Val	Gly	Gln	Tyr	Schilling & Overall, 2008
uncharacterized protein yccJ	P0AB14	1-75	peptide-Glu30+Val-peptide	N	MS	Ala	Ile	Phe	Glu	Val	Ala	Gly	Tyr	Timmer et al., 2009
uncharacterized protein yeaG	P0ACY3	1-644	peptide-Glu12+Ala-peptide	N	MS	Gln	Arg	Tyr	Glu	Ala	Ala	Lys	Asp	Timmer et al., 2009
uncharacterized protein yibT	Q2M7R5	1-69	peptide-Glu6+Asn-peptide	N	MS	Lys	Leu	Gly	Glu	Asn	Val	Pro	Leu	Timmer et al., 2009
UPF0027 protein C22orf28	Q9Y3I0	81-125	peptide-Glu108+Ala-peptide	N	MS	Asn	Asp	Pro	Glu	Ala	Val	Val	Ser	Schilling & Overall, 2008
UPF0027 protein C22orf28	Q9Y3I0	140-158	E+QLAQAMFDHIPVGVGSK	N	MS	-	-	-	Glu	Gln	Leu	Ala	Gln	Schilling & Overall, 2008
UPF0082 protein yebC	P0A8A0	1-246	peptide-Glu31+Leu-peptide	N	MS	Ile	Ile	Arg	Glu	Leu	Val	Thr	Ala	Timmer et al., 2009
UPF0160 protein MYG1, mitochondrial	Q9HB07		peptide-Glu248+Ala-peptide	N	MS	Leu	Val	Glu	Glu	Ala	Leu	Ala	Gln	Vidmar et al., 2017
UPF0241 protein yihI	P0A8H6	1-169	peptide-Glu98+Leu-peptide	N	MS	Pro	Gln	Ala	Glu	Leu	Glu	Leu	Leu	Timmer et al., 2009
UPF0325 protein yaeH	P62768	1-128	peptide-Glu108+Ser-peptide	N	MS	Arg	His	Leu	Glu	Ser	Val	Val	Thr	Timmer et al., 2009
UPF0337 protein yjbJ	P68206	1-69	peptide-Glu19+Gln-peptide	N	MS	Lys	Val	Lys	Glu	Gln	Trp	Gly	Lys	Timmer et al., 2009
UPF0364 protein C6orf211	Q9H993	66-81	NE+LQTDKPFIPLVEK	N	MS	-	-	Asn	Glu	Leu	Gln	Thr	Asp	Schilling & Overall, 2008
UPF0400 protein C20orf77	Q9NQG5	79-94	EFE+SVLVDAFSHVAR	N	MS	-	Glu	Phe	Glu	Ser	Val	Leu	Val	Schilling & Overall, 2008
UPF0438 protein yifE	P0ADN2	2-112	peptide-Glu55+Glu-peptide	N	MS	Pro	Val	Thr	Glu	Glu	Glu	Lys	Leu	Timmer et al., 2009
UPF0553 protein C9orf64	Q5T6V5		peptide-Glu16+Asn-peptide	N	MS	Phe	Ile	Ala	Glu	Asn	Ser	Arg	Asp	Vidmar et al., 2017
Uroporphyrinogen decarboxylase	P06132		peptide-Glu27+Thr-peptide	N	MS	Trp	Gly	Glu	Glu	Thr	Asp	Tyr	Thr	Vidmar et al., 2017
Uroporphyrinogen decarboxylase	P06132		peptide-Glu278+Val-peptide	N	MS	Ala	Gly	Tyr	Glu	Val	Val	Gly	Leu	Vidmar et al., 2017
Uroporphyrinogen decarboxylase	P06132		peptide-Glu13+Leu-peptide	N	MS	Gly	Phe	Pro	Glu	Leu	Lys	Asn	Asp	Vidmar et al., 2017
UTP--glucose-1-phosphate uridylyltransferase	P0AEP3	2-302	peptide-Glu93+Val-peptide	N	MS	Leu	Leu	Asp	Glu	Val	Gln	Ser	Ile	Timmer et al., 2009
UTP--glucose-1-phosphate uridylyltransferase	P0AEP3	2-302	peptide-Glu187+Leu-peptide	N	MS	Lys	Gly	Val	Glu	Leu	Ala	Pro	Gly	Timmer et al., 2009
UV excision repair protein RAD23 homolog A	P54725		peptide-Glu178+Arg-peptide	N	MS	Tyr	Glu	Arg	Glu	Arg	Val	Val	Ala	Vidmar et al., 2017
UV excision repair protein RAD23 homolog B	P54727	1-409	peptide-Glu61+Tyr-peptide	N	MS	Ala	Leu	Lys	Glu	Tyr	Lys	Ile	Asp	Schilling & Overall, 2008
UV excision repair protein RAD23 homolog B	P54727	1-409	peptide-Glu223+Tyr-peptide	N	MS	Arg	Ala	Val	Glu	Tyr	Leu	Leu	Met	Schilling & Overall, 2008
UV excision repair protein RAD23 homolog B	P54727		peptide-Glu203+Arg-peptide	N	MS	Met	Gly	Tyr	Glu	Arg	Glu	Gln	Val	Vidmar et al., 2017
UV excision repair protein RAD23 homolog B	P54727		peptide-Glu205+Gln-peptide	N	MS	Tyr	Glu	Arg	Glu	Gln	Val	Ile	Ala	Vidmar et al., 2017
UV excision repair protein RAD23 homolog B	P54727		peptide-Glu351+Ala-peptide	N	MS	Gly	Ile	Ala	Glu	Ala	Gly	Ser	Gly	Vidmar et al., 2017
UV excision repair protein RAD23 homolog B	P54727		peptide-Glu196+Ile-peptide	N	MS	Met	Val	Thr	Glu	Ile	Met	Ser	Met	Vidmar et al., 2017
UV excision repair protein RAD23 homolog B	P54727		peptide-Glu322+His-peptide	N	MS	Gln	His	Gln	Glu	His	Phe	Ile	Gln	Vidmar et al., 2017
vacuolar ATP synthase subunit B, brain isoform	P21281	163-185	peptide-Glu168+Met-peptide	N	MS	Tyr	Pro	Glu	Glu	Met	Ile	Gln	Thr	Schilling & Overall, 2008
Vacuolar protein sorting-associated protein 29	Q9UBQ0		peptide-Glu125+Asn-peptide	N	MS	Phe	Glu	His	Glu	Asn	Lys	Phe	Tyr	Vidmar et al., 2017
vacuolar proton pump subunit d 1	P61421	1-351	peptide-Glu40+Thr-peptide	N	MS	Val	Gln	Cys	Glu	Thr	Leu	Glu	Asp	Schilling & Overall, 2008
Valine--tRNA ligase	P26640		peptide-Glu245+Lys-peptide	N	MS	Glu	Lys	Leu	Glu	Lys	Phe	Gln	Gln	Vidmar et al., 2017
Valine--tRNA ligase	P26640		peptide-Glu1220+Arg-peptide	N	MS	Arg	Leu	Arg	Glu	Arg	Arg	Ala	Ala	Vidmar et al., 2017
Valine--tRNA ligase	P26640		peptide-Glu1255+Ala-peptide	N	MS	Lys	Val	Asp	Glu	Ala	Ile	Ala	Leu	Vidmar et al., 2017
Valine--tRNA ligase	P26640		peptide-Glu1210+Ala-peptide	N	MS	Lys	Arg	Val	Glu	Ala	Gln	Arg	Gln	Vidmar et al., 2017
Valine--tRNA ligase	P26640		peptide-Glu1240+Ala-peptide	N	MS	Glu	Ala	Asp	Glu	Ala	Lys	Leu	Gln	Vidmar et al., 2017
Valine--tRNA ligase	P26640		peptide-Glu1200+Leu-peptide	N	MS	Pro	Ala	Arg	Glu	Leu	Gly	Lys	Leu	Vidmar et al., 2017
Vasodilator-stimulated phosphoprotein	P50552		peptide-Glu330+Thr-peptide	N	MS	Thr	Thr	Ser	Glu	Thr	Gln	Pro	Cys	Vidmar et al., 2017
Vasodilator-stimulated phosphoprotein	P50552		peptide-Glu254+Ser-peptide	N	MS	Pro	Lys	Ala	Glu	Ser	Gly	Arg	Ser	Vidmar et al., 2017
Vasodilator-stimulated phosphoprotein	P50552		peptide-Glu243+Ala-peptide	N	MS	Lys	Gln	Glu	Glu	Ala	Ser	Gly	Gly	Vidmar et al., 2017
Vasodilator-stimulated phosphoprotein	P50552		peptide-Glu296+Ala-peptide	N	MS	Glu	Glu	Pro	Glu	Ala	Arg	Val	Pro	Vidmar et al., 2017
Vesicle-associated membrane protein 3	Q15836		peptide-Glu24+Val-peptide	N	MS	Gln	Val	Asp	Glu	Val	Val	Asp	Ile	Vidmar et al., 2017
Vesicle-associated membrane protein 3	Q15836		peptide-Glu45+Leu-peptide	N	MS	Lys	Leu	Ser	Glu	Leu	Asp	Asp	Arg	Vidmar et al., 2017
Vesicle-associated membrane protein 8	Q9BV40		peptide-Glu19+Val-peptide	N	MS	Leu	Gln	Ser	Glu	Val	Glu	Gly	Val	Vidmar et al., 2017
Vesicle-associated membrane protein 8	Q9BV40		peptide-Glu42+His-peptide	N	MS	Glu	Asn	Leu	Glu	His	Leu	Arg	Asn	Vidmar et al., 2017
Vesicle-associated membrane protein-associated protein B/C	O95292		peptide-Glu5+Gln-peptide	N	MS	Ala	Lys	Val	Glu	Gln	Val	Leu	Ser	Vidmar et al., 2017
vigilin	Q00341	536-550	FPE+VIINFPDPAQK	N	MS	-	Phe	Pro	Glu	Val	Ile	Ile	Asn	Schilling & Overall, 2008
vigilin	Q00341	2-1268	peptide-Glu34+Ser-peptide	N	MS	Ser	Glu	Glu	Glu	Ser	Asp	Pro	Pro	Schilling & Overall, 2008
vigilin	Q00341	2-1268	peptide-Glu86+Arg-peptide	N	MS	Pro	Leu	Glu	Glu	Arg	Lys	Tyr	Lys	Schilling & Overall, 2008
vigilin	Q00341	2-1268	peptide-Glu1036+Arg-peptide	N	MS	Gly	Leu	Leu	Glu	Arg	Val	Lys	Glu	Schilling & Overall, 2008
vimentin	P08670	424-439	ETNLD+SLPLVDTHSK	N	MS	Thr	Asn	Leu	Asp	Ser	Leu	Pro	Leu	Schilling & Overall, 2008
vimentin	P08670	170-184	VEVE+RDNLAEDIMR	N	MS	Val	Glu	Val	Glu	Arg	Asp	Asn	Leu	Schilling & Overall, 2008
vimentin	P08670	2-466	peptide-Glu95+Phe-peptide	N	MS	Ile	Asn	Thr	Glu	Phe	Lys	Asn	Thr	Schilling & Overall, 2008
vimentin	P08670	2-466	peptide-Glu221+Arg-peptide	N	MS	Leu	Asp	Leu	Glu	Arg	Lys	Val	Glu	Schilling & Overall, 2008
vimentin	P08670	2-466	peptide-Glu425+Thr-peptide	N	MS	Asn	Leu	Arg	Glu	Thr	Asn	Leu	Asp	Schilling & Overall, 2008
vimentin	P08670	2-466	peptide-Glu368+Ile-peptide	N	MS	Leu	Gln	Asp	Glu	Ile	Gln	Asn	Met	Schilling & Overall, 2008
Vimentin	P08670		peptide-Glu172+Val-peptide	N	MS	Ala	Arg	Val	Glu	Val	Glu	Arg	Asp	Vidmar et al., 2017
Vimentin	P08670		peptide-Glu134+Leu-peptide	N	MS	Leu	Leu	Ala	Glu	Leu	Glu	Gln	Leu	Vidmar et al., 2017
Vimentin	P08670		peptide-Glu354+Ala-peptide	N	MS	Phe	Ala	Val	Glu	Ala	Ala	Asn	Tyr	Vidmar et al., 2017
Vimentin	P08670		peptide-Glu277+Ser-peptide	N	MS	Gln	Gln	Tyr	Glu	Ser	Val	Ala	Ala	Vidmar et al., 2017
Vimentin	P08670		peptide-Glu230+Ile-peptide	N	MS	Leu	Gln	Glu	Glu	Ile	Ala	Phe	Leu	Vidmar et al., 2017
Vimentin	P08670		peptide-Glu156+Leu-peptide	N	MS	Glu	Met	Arg	Glu	Leu	Arg	Arg	Gln	Vidmar et al., 2017
Vimentin	P08670		peptide-Glu125+Gln-peptide	N	MS	Arg	Phe	Leu	Glu	Gln	Gln	Asn	Lys	Vidmar et al., 2017
Vimentin	P08670		peptide-Glu251+Gln-peptide	N	MS	Gln	Ile	Gln	Glu	Gln	His	Val	Gln	Vidmar et al., 2017
Vimentin	P08670		peptide-Glu192+Met-peptide	N	MS	Leu	Gln	Glu	Glu	Met	Leu	Gln	Arg	Vidmar et al., 2017
Vimentin	P08670		peptide-Glu109+Leu-peptide	N	MS	Glu	Leu	Gln	Glu	Leu	Asn	Asp	Arg	Vidmar et al., 2017
Vimentin	P08670		peptide-Glu300+Ala-peptide	N	MS	Asp	Leu	Ser	Glu	Ala	Ala	Asn	Arg	Vidmar et al., 2017
voltage-dependent anion-selective channel protein 1	P21796	96-110	LTFD+SSFSPNTGKK	N	MS	Leu	Thr	Phe	Asp	Ser	Ser	Phe	Ser	Schilling & Overall, 2008
voltage-dependent anion-selective channel protein 1	P21796	201-218	LE+TAVNLAWTAGNSNTR	N	MS	-	-	Leu	Glu	Thr	Ala	Val	Asn	Schilling & Overall, 2008
voltage-dependent anion-selective channel protein 1	P21796	2-283	peptide-Glu280+Phe-peptide	N	MS	Leu	Gly	Leu	Glu	Phe	Gln	Ala	-	Schilling & Overall, 2008
WASH complex subunit 3	Q9Y3C0		peptide-Glu85+Val-peptide	N	MS	Val	Thr	Val	Glu	Val	Ser	Pro	Leu	Vidmar et al., 2017
WD repeat-containing protein 1 isoform 1 variant	Q53H17	1-606	peptide-Glu482+Gly-peptide	N	MS	Leu	Lys	Asp	Glu	Gly	Lys	Leu	Leu	Schilling & Overall, 2008
WD repeat-containing protein 44	Q5JSH3		peptide-Glu182+Val-peptide	N	MS	Glu	Ala	Val	Glu	Val	Lys	Gly	Gly	Vidmar et al., 2017
WD repeat-containing protein 44	Q5JSH3		peptide-Glu265+Phe-peptide	N	MS	Ser	Glu	Leu	Glu	Phe	Glu	Thr	Leu	Vidmar et al., 2017
WD repeat-containing protein 44	Q5JSH3		peptide-Glu54+Leu-peptide	N	MS	Pro	Val	Gln	Glu	Leu	Lys	Gln	Asp	Vidmar et al., 2017
WUGSC:H_RG054D04.1 protein	O95036	201-211	E+ANNFLWPFK	N	MS	-	-	-	Glu	Ala	Asn	Asn	Phe	Schilling & Overall, 2008
WUGSC:H_RG054D04.1 protein	O95036	222-241	TTHFVE+GGDAGNREDQINR	N	MS	His	Phe	Val	Glu	Gly	Gly	Asp	Ala	Schilling & Overall, 2008
WW domain-binding protein 11	Q9Y2W2	1-641	peptide-Glu555+Lys-peptide	N	MS	Ala	Thr	Ile	Glu	Lys	Lys	Ala	Thr	Schilling & Overall, 2008
X-ray repair cross-complementing protein 5	P13010		peptide-Glu570+Gln-peptide	N	MS	Leu	Lys	Thr	Glu	Gln	Gly	Gly	Ala	Vidmar et al., 2017
X-ray repair cross-complementing protein 6	P12956		peptide-Glu467+Lys-peptide	N	MS	Ala	Ile	Val	Glu	Lys	Leu	Arg	Phe	Vidmar et al., 2017
X-ray repair cross-complementing protein 6	P12956		peptide-Glu107+Leu-peptide	N	MS	Val	Leu	Gln	Glu	Leu	Asp	Asn	Pro	Vidmar et al., 2017
Xaa-Pro aminopeptidase 1	Q9NQW7		peptide-Glu349+Lys-peptide	N	MS	Asn	Trp	Leu	Glu	Lys	Glu	Val	Pro	Vidmar et al., 2017
Z-Phe-Leu-Glu-NHPhNO2			Z-Phe-Leu-Glu+NHPhNO2	S		Z	Phe	Leu	Glu	NAN	-	-	-
zinc finger CCCH domain-containing protein 15	Q8WU90	76-93	ELQELNE+LFKPVVAAQK	N	MS	Glu	Leu	Asn	Glu	Leu	Phe	Lys	Pro	Schilling & Overall, 2008
Zinc finger protein 185	O15231		peptide-Glu192+His-peptide	N	MS	Ala	Pro	Arg	Glu	His	Ser	Tyr	Val	Vidmar et al., 2017
Zinc finger protein 185	O15231		peptide-Glu409+Gly-peptide	N	MS	Ala	Asp	Tyr	Glu	Gly	Lys	Asp	Val	Vidmar et al., 2017
Zinc finger protein 185	O15231		peptide-Glu475+Gly-peptide	N	MS	Thr	Asp	Phe	Glu	Gly	Lys	Asp	Val	Vidmar et al., 2017
zinc finger protein ZPR1	O75312	1-459	peptide-Glu280+Val-peptide	N	MS	His	Phe	Lys	Glu	Val	Ile	Ile	Met	Schilling & Overall, 2008
Zinc finger protein ZPR1	O75312		peptide-Glu147+Gly-peptide	N	MS	Thr	Thr	Val	Glu	Gly	Leu	Ile	Thr	Vidmar et al., 2017
Zinc phosphodiesterase ELAC protein 2	Q9BQ52		peptide-Glu786+Leu-peptide	N	MS	Glu	Lys	Arg	Glu	Leu	Arg	Gln	Val	Vidmar et al., 2017
zinedin variant	Q59GV6	1-755	peptide-Glu70+Trp-peptide	N	MS	Ile	Gln	His	Glu	Trp	Ala	Arg	Phe	Schilling & Overall, 2008
Zyxin	Q15942		peptide-Glu327+Lys-peptide	N	MS	Arg	Val	Gln	Glu	Lys	Gln	His	Pro	Vidmar et al., 2017
Zyxin	Q15942		peptide-Glu358+Leu-peptide	N	MS	Glu	Val	Glu	Glu	Leu	Glu	Gln	Leu	Vidmar et al., 2017