Substrates for peptidase C01.034: cathepsin S

Summary Gene structure Alignment Tree Sequences Sequence features Distribution Structure Literature Substrates Pharma

Peptide and protein substrates that are thought to be physiologically relevant are indicated by P. Peptide and protein substrates that are thought to be pathologically relevant are indicated by D. Peptide and protein substrates that are not physiologically relevant are indicated by N. Synthetic substrates are indicated by S. Click on the symbol to show only physiological, non-physiological or synthetic substrates, or here to display all substrates. How cleavage sites have been identified are indicated by the following evidence codes: NT = N-terminal sequencing, MS = mass spectroscopy, MU = mutation, CS = consensus sequence, LC = liquid chromatography. To see all annotated cleavages for a protein substrate, click on the UniProt Accession.

Substrate	Uniprot	Residue range	Cleavage Site	Cleavage type	Evidence	P4	P3	P2	P1	P1'	P2'	P3'	P4'	Reference	CutDB
10 kDa heat shock protein, mitochondrial	P61604	16-28	Val-Leu-Val-Glu19+Arg-Peptide	N	MS	Val	Leu	Val	Glu	Arg	Ser	Ala	Ala	Biniossek et al., 2011
10 kDa heat shock protein, mitochondrial	P61604	41-66	Peptide-Gly50+Ser-Peptide	N	MS	Val	Ala	Val	Gly	Ser	Gly	Ser	Lys	Biniossek et al., 2011
10 kDa heat shock protein, mitochondrial	P61604	16-28	Val-Leu-Val18+Glu-Peptide	N	MS	-	Val	Leu	Val	Glu	Arg	Ser	Ala	Biniossek et al., 2011
116 kDa U5 small nuclear ribonucleoprotein component	Q15029	496-508	Val-Leu-Ser498+Gly-Peptide	N	MS	-	Val	Leu	Ser	Gly	Thr	Ile	His	Biniossek et al., 2011
14-3-3 protein beta/alpha	P31946	30-43	Ala-Val-Thr32+Glu-Peptide	N	MS	-	Ala	Val	Thr	Glu	Gln	Gly	His	Biniossek et al., 2011
14-3-3 protein beta/alpha	P31946		peptide-Lys122+Met-peptide	N	MS	Phe	Tyr	Leu	Lys	Met	Lys	Gly	Asp	Vidmar et al., 2017
14-3-3 protein beta/alpha	P31946		peptide-Ala15+Glu-peptide	N	MS	Ala	Lys	Leu	Ala	Glu	Gln	Ala	Glu	Vidmar et al., 2017
14-3-3 protein beta/alpha, N-terminally processed	P31946	30-43	Ala-Val-Thr-Glu33+Gln-Peptide	N	MS	Ala	Val	Thr	Glu	Gln	Gly	His	Glu	Biniossek et al., 2011
14-3-3 protein epsilon	P62258	131-142	Peptide-Ala133+Glu-Peptide	N	MS	-	Tyr	Leu	Ala	Glu	Phe	Ala	Thr	Biniossek et al., 2011
14-3-3 protein epsilon	P62258	154-170	Peptide-Thr161+Glu-Peptide	N	MS	Ile	Ala	Met	Thr	Glu	Leu	Pro	Pro	Biniossek et al., 2011
14-3-3 protein epsilon	P62258		peptide-Ala195+Lys-peptide	N	MS	Cys	Arg	Leu	Ala	Lys	Ala	Ala	Phe	Vidmar et al., 2017
14-3-3 protein epsilon	P62258		peptide-Gly172+Leu-peptide	N	MS	Ile	Arg	Leu	Gly	Leu	Ala	Leu	Asn	Vidmar et al., 2017
14-3-3 protein epsilon	P62258		peptide-Ala14+Glu-peptide	N	MS	Ala	Lys	Leu	Ala	Glu	Gln	Ala	Glu	Vidmar et al., 2017
14-3-3 protein gamma	P61981	173-195	Peptide-Gln187+Asn-Peptide	N	MS	Tyr	Glu	Ile	Gln	Asn	Ala	Pro	Glu	Biniossek et al., 2011
14-3-3 protein gamma	P61981		peptide-Asn34+Glu-peptide	N	MS	Thr	Glu	Leu	Asn	Glu	Pro	Leu	Ser	Vidmar et al., 2017
14-3-3 protein sigma	P31947		peptide-Ala13+Glu-peptide	N	MS	Ala	Lys	Leu	Ala	Glu	Gln	Ala	Glu	Vidmar et al., 2017
14-3-3 protein sigma	P31947		peptide-Leu62+Ser-peptide	N	MS	Trp	Arg	Val	Leu	Ser	Ser	Ile	Glu	Vidmar et al., 2017
14-3-3 protein sigma	P31947		peptide-Lys109+Glu-peptide	N	MS	His	Leu	Ile	Lys	Glu	Ala	Gly	Asp	Vidmar et al., 2017
14-3-3 protein theta	P27348	140-158	Peptide-Gln150+Glu-Peptide	N	MS	Gly	Ala	Tyr	Gln	Glu	Ala	Phe	Asp	Biniossek et al., 2011
14-3-3 protein theta	P27348	28-41	Ala-Val-Thr30+Glu-Peptide	N	MS	-	Ala	Val	Thr	Glu	Gln	Gly	Ala	Biniossek et al., 2011
14-3-3 protein theta	P27348	28-41	Ala-Val-Thr-Glu31+Gln-Peptide	N	MS	Ala	Val	Thr	Glu	Gln	Gly	Ala	Glu	Biniossek et al., 2011
14-3-3 protein theta	P27348		peptide-Ala192+Lys-peptide	N	MS	Cys	Thr	Leu	Ala	Lys	Thr	Ala	Phe	Vidmar et al., 2017
14-3-3 protein theta	P27348		peptide-Asn207+Glu-peptide	N	MS	Asp	Thr	Leu	Asn	Glu	Asp	Ser	Tyr	Vidmar et al., 2017
14-3-3 protein theta	P27348		peptide-Ala13+Glu-peptide	N	MS	Ala	Lys	Leu	Ala	Glu	Gln	Ala	Glu	Vidmar et al., 2017
14-3-3 protein zeta/delta	P63104		peptide-Ala13+Glu-peptide	N	MS	Ala	Lys	Leu	Ala	Glu	Gln	Ala	Glu	Vidmar et al., 2017
14-3-3 protein zeta/delta	P63104		peptide-Gly53+Ala-peptide	N	MS	Asn	Val	Val	Gly	Ala	Arg	Arg	Ser	Vidmar et al., 2017
14-3-3 protein zeta/delta	P63104		peptide-Gly169+Leu-peptide	N	MS	Ile	Arg	Leu	Gly	Leu	Ala	Leu	Asn	Vidmar et al., 2017
14-3-3 protein zeta/delta	P63104		peptide-Ala130+Glu-peptide	N	MS	Arg	Tyr	Leu	Ala	Glu	Val	Ala	Ala	Vidmar et al., 2017
14-3-3 protein zeta/delta	P63104		peptide-Leu101+Glu-peptide	N	MS	Leu	Ser	Leu	Leu	Glu	Lys	Phe	Leu	Vidmar et al., 2017
14-3-3 protein zeta/delta	P63104		peptide-Glu35+Leu-peptide	N	MS	Gln	Gly	Ala	Glu	Leu	Ser	Asn	Glu	Vidmar et al., 2017
14-3-3 protein zeta/delta	P63104		peptide-Gln150+Glu-peptide	N	MS	Gln	Ala	Tyr	Gln	Glu	Ala	Phe	Glu	Vidmar et al., 2017
14-3-3 protein zeta/delta	P63104		peptide-Leu105+Ile-peptide	N	MS	Glu	Lys	Phe	Leu	Ile	Pro	Asn	Ala	Vidmar et al., 2017
14-3-3 protein zeta/delta	P63104		peptide-Ser45+Val-peptide	N	MS	Asn	Leu	Leu	Ser	Val	Ala	Tyr	Lys	Vidmar et al., 2017
14-3-3 protein zeta/delta	P63104		peptide-Lys120+Met-peptide	N	MS	Phe	Tyr	Leu	Lys	Met	Lys	Gly	Asp	Vidmar et al., 2017
14-3-3 protein zeta/delta	P63104		peptide-Ala192+Lys-peptide	N	MS	Cys	Ser	Leu	Ala	Lys	Thr	Ala	Phe	Vidmar et al., 2017
14-3-3 protein zeta/delta	P63104		peptide-Ala133+Ala-peptide	N	MS	Ala	Glu	Val	Ala	Ala	Gly	Asp	Asp	Vidmar et al., 2017
14-3-3 protein zeta/delta	P63104		peptide-Thr30+Glu-peptide	N	MS	Lys	Ser	Val	Thr	Glu	Gln	Gly	Ala	Vidmar et al., 2017
14-3-3 protein zeta/delta	P63104		peptide-Glu154+Ile-peptide	N	MS	Glu	Ala	Phe	Glu	Ile	Ser	Lys	Lys	Vidmar et al., 2017
14-3-3 protein zeta/delta	P63104		peptide-Ser207+Glu-peptide	N	MS	Asp	Thr	Leu	Ser	Glu	Glu	Ser	Tyr	Vidmar et al., 2017
14-3-3 protein zeta/delta	P63104		peptide-Lys27+Ser-peptide	N	MS	Ala	Cys	Met	Lys	Ser	Val	Thr	Glu	Vidmar et al., 2017
26S protease regulatory subunit 10B	P62333	256-272	Peptide-Asp265+Gly-Peptide	N	MS	Asn	Gln	Met	Asp	Gly	Phe	Asp	Thr	Biniossek et al., 2011
26S protease regulatory subunit 10B	P62333	256-272	Peptide-Asn262+Gln-Peptide	N	MS	Glu	Leu	Leu	Asn	Gln	Met	Asp	Gly	Biniossek et al., 2011
26S protease regulatory subunit 10B	P62333	186-197	Ala-Val-Ala188+Ser-Peptide	N	MS	-	Ala	Val	Ala	Ser	Gln	Leu	Asp	Biniossek et al., 2011
26S protease regulatory subunit 6A	P17980	309-327	Peptide-Asn315+Gln-Peptide	N	MS	Glu	Leu	Leu	Asn	Gln	Leu	Asp	Gly	Biniossek et al., 2011
26S protease regulatory subunit 6B	P43686	288-306	Peptide-Asn294+Gln-Peptide	N	MS	Glu	Leu	Leu	Asn	Gln	Met	Asp	Gly	Biniossek et al., 2011
26S protease regulatory subunit 6B	P43686	47-66	Peptide-Glu55+Val-Peptide	N	MS	Glu	Phe	Leu	Glu	Val	Gln	Glu	Glu	Biniossek et al., 2011
26S proteasome non-ATPase regulatory subunit 1	Q99460	629-649	Peptide-Ser641+Glu-Peptide	N	MS	Ser	Leu	Leu	Ser	Glu	Ser	Tyr	Asn	Biniossek et al., 2011
26S proteasome non-ATPase regulatory subunit 1	Q99460		peptide-Gly487+Thr-peptide	N	MS	Ala	Ala	Met	Gly	Thr	Ala	Arg	Gln	Vidmar et al., 2017
26S proteasome non-ATPase regulatory subunit 1	Q99460		peptide-Ala929+Ala-peptide	N	MS	Glu	Pro	Val	Ala	Ala	His	Gly	Pro	Vidmar et al., 2017
26S proteasome non-ATPase regulatory subunit 10	O75832		peptide-Ser49+Ala-peptide	N	MS	Trp	Ala	Cys	Ser	Ala	Gly	His	Thr	Vidmar et al., 2017
26S proteasome non-ATPase regulatory subunit 2	Q13200	9-31	Peptide-Gln15+Ser-Peptide	N	MS	Gln	Pro	Gln	Gln	Ser	Pro	Ala	Ala	Biniossek et al., 2011
26S proteasome non-ATPase regulatory subunit 2	Q13200	9-31	Peptide-Ala18+Ala-Peptide	N	MS	Gln	Ser	Pro	Ala	Ala	Ala	Pro	Gly	Biniossek et al., 2011
26S proteasome non-ATPase regulatory subunit 4	P55036	99-126	Peptide-Gly114+Ser-Peptide	N	MS	Ala	Phe	Val	Gly	Ser	Pro	Val	Glu	Biniossek et al., 2011
26S proteasome non-ATPase regulatory subunit 4	P55036		peptide-Lys132+Lys-peptide	N	MS	Lys	Arg	Leu	Lys	Lys	Glu	Lys	Val	Vidmar et al., 2017
26S proteasome non-ATPase regulatory subunit 7	P51665	130-153	Peptide-Glu142+Glu-Peptide	N	MS	Ile	Ser	Val	Glu	Glu	Val	His	Asp	Biniossek et al., 2011
26S proteasome non-ATPase regulatory subunit 7	P51665		peptide-Arg177+Asp-peptide	N	MS	His	Leu	Leu	Arg	Asp	Ile	Lys	Asp	Vidmar et al., 2017
26S proteasome non-ATPase regulatory subunit 7	P51665		peptide-Thr159+Ser-peptide	N	MS	Glu	His	Val	Thr	Ser	Glu	Ile	Gly	Vidmar et al., 2017
26S proteasome regulatory subunit 6A	P17980		peptide-Asp178+Glu-peptide	N	MS	Met	Glu	Val	Asp	Glu	Arg	Pro	Thr	Vidmar et al., 2017
26S proteasome regulatory subunit 6A	P17980		peptide-Met225+Tyr-peptide	N	MS	Gly	Val	Leu	Met	Tyr	Gly	Pro	Pro	Vidmar et al., 2017
26S proteasome regulatory subunit 6A	P17980		peptide-Glu353+Phe-peptide	N	MS	Arg	Lys	Ile	Glu	Phe	Pro	Met	Pro	Vidmar et al., 2017
26S proteasome regulatory subunit 6A	P17980		peptide-Lys35+Met-peptide	N	MS	Glu	Val	Leu	Lys	Met	Ser	Thr	Glu	Vidmar et al., 2017
26S proteasome regulatory subunit 6B	P43686		peptide-Glu9+Lys-peptide	N	MS	Ile	Leu	Val	Glu	Lys	Ala	Gln	Asp	Vidmar et al., 2017
26S proteasome regulatory subunit 6B	P43686		peptide-Ser28+Phe-peptide	N	MS	Thr	Gly	Leu	Ser	Phe	Leu	Gly	Pro	Vidmar et al., 2017
26S proteasome regulatory subunit 6B	P43686		peptide-Leu30+Gly-peptide	N	MS	Leu	Ser	Phe	Leu	Gly	Pro	Glu	Pro	Vidmar et al., 2017
26S proteasome regulatory subunit 7	P35998		peptide-Thr99+Lys-peptide	N	MS	Ala	Arg	Cys	Thr	Lys	Ile	Ile	Asn	Vidmar et al., 2017
26S proteasome regulatory subunit 7	P35998		peptide-Met319+Ala-peptide	N	MS	Lys	Val	Leu	Met	Ala	Thr	Asn	Arg	Vidmar et al., 2017
26S proteasome regulatory subunit 7	P35998		peptide-Thr173+Tyr-peptide	N	MS	Pro	Asp	Val	Thr	Tyr	Ser	Asp	Val	Vidmar et al., 2017
26S proteasome regulatory subunit 7	P35998		peptide-Asp124+Leu-peptide	N	MS	Phe	Val	Val	Asp	Leu	Ser	Asp	Gln	Vidmar et al., 2017
3'(2'),5'-bisphosphate nucleotidase 1	O95861	202-217	Peptide-Ala208+Ala-Peptide	N	MS	Asp	Cys	Val	Ala	Ala	Met	Asn	Pro	Biniossek et al., 2011
3-hydroxybutyrate dehydrogenase type 2	Q9BUT1	43-55	Peptide-Glu47+Lys-Peptide	N	MS	Gln	Glu	Leu	Glu	Lys	Tyr	Pro	Gly	Biniossek et al., 2011
39S ribosomal protein L12, mitochondrial	P52815	45-58	Peptide-Ala49+Gly-Peptide	N	MS	Glu	Ala	Leu	Ala	Gly	Ala	Pro	Leu	Biniossek et al., 2011
40S ribosomal protein S10	P46783		peptide-Ser130+Ala-peptide	N	MS	Tyr	Arg	Arg	Ser	Ala	Val	Pro	Pro	Vidmar et al., 2017
40S ribosomal protein S10	P46783		peptide-Ala36+Asp-peptide	N	MS	Pro	Glu	Leu	Ala	Asp	Lys	Asn	Val	Vidmar et al., 2017
40S ribosomal protein S10	P46783		peptide-Arg8+Ile-peptide	N	MS	Lys	Lys	Asn	Arg	Ile	Ala	Ile	Tyr	Vidmar et al., 2017
40S ribosomal protein S10	P46783		peptide-Thr72+Asn-peptide	N	MS	Trp	Tyr	Leu	Thr	Asn	Glu	Gly	Ile	Vidmar et al., 2017
40S ribosomal protein S10	P46783		peptide-His84+Leu-peptide	N	MS	Asp	Tyr	Leu	His	Leu	Pro	Pro	Glu	Vidmar et al., 2017
40S ribosomal protein S10	P46783		peptide-Lys59+Glu-peptide	N	MS	Gly	Tyr	Val	Lys	Glu	Gln	Phe	Ala	Vidmar et al., 2017
40S ribosomal protein S10	P46783		peptide-Arg128+Arg-peptide	N	MS	Asp	Thr	Tyr	Arg	Arg	Ser	Ala	Val	Vidmar et al., 2017
40S ribosomal protein S12	P25398		peptide-Lys112+Asp-peptide	N	MS	Val	Val	Val	Lys	Asp	Tyr	Gly	Lys	Vidmar et al., 2017
40S ribosomal protein S12	P25398		peptide-Leu52+Ala-peptide	N	MS	Leu	Cys	Val	Leu	Ala	Ser	Asn	Cys	Vidmar et al., 2017
40S ribosomal protein S12	P25398		peptide-Lys23+Thr-peptide	N	MS	Glu	Val	Leu	Lys	Thr	Ala	Leu	Ile	Vidmar et al., 2017
40S ribosomal protein S12	P25398		peptide-Arg36+Glu-peptide	N	MS	Arg	Gly	Ile	Arg	Glu	Ala	Ala	Lys	Vidmar et al., 2017
40S ribosomal protein S13	P62277		peptide-Lys27+Leu-peptide	N	MS	Thr	Trp	Leu	Lys	Leu	Thr	Ser	Asp	Vidmar et al., 2017
40S ribosomal protein S14	P62263	87-96	Glu-Leu-Gly89+IIe-Peptide	N	MS	-	Glu	Leu	Gly	Ile	Thr	Ala	Leu	Biniossek et al., 2011
40S ribosomal protein S14	P62263		peptide-Lys61+Val-peptide	N	MS	Gly	Gly	Met	Lys	Val	Lys	Ala	Asp	Vidmar et al., 2017
40S ribosomal protein S14	P62263		peptide-Arg98+Ala-peptide	N	MS	Ile	Lys	Leu	Arg	Ala	Thr	Gly	Gly	Vidmar et al., 2017
40S ribosomal protein S14	P62263		peptide-Phe34+Ala-peptide	N	MS	Cys	His	Ile	Phe	Ala	Ser	Phe	Asn	Vidmar et al., 2017
40S ribosomal protein S14	P62263		peptide-Lys63+Ala-peptide	N	MS	Met	Lys	Val	Lys	Ala	Asp	Arg	Asp	Vidmar et al., 2017
40S ribosomal protein S14	P62263		peptide-Asn38+Asp-peptide	N	MS	Ala	Ser	Phe	Asn	Asp	Thr	Phe	Val	Vidmar et al., 2017
40S ribosomal protein S14	P62263		peptide-Lys106+Thr-peptide	N	MS	Asn	Arg	Thr	Lys	Thr	Pro	Gly	Pro	Vidmar et al., 2017
40S ribosomal protein S15	P62841	101-114	Peptide-Glu106+IIe-Peptide	N	MS	Asn	Gln	Val	Glu	Ile	Lys	Pro	Glu	Biniossek et al., 2011
40S ribosomal protein S15	P62841		peptide-Gly134+Ala-peptide	N	MS	Pro	Gly	Ile	Gly	Ala	Thr	His	Ser	Vidmar et al., 2017
40S ribosomal protein S15	P62841		peptide-Gly95+Val-peptide	N	MS	Ser	Met	Val	Gly	Val	Tyr	Asn	Gly	Vidmar et al., 2017
40S ribosomal protein S15	P62841		peptide-Thr16+Tyr-peptide	N	MS	Arg	Lys	Phe	Thr	Tyr	Arg	Gly	Val	Vidmar et al., 2017
40S ribosomal protein S17	P08708		peptide-Ser89+Ala-peptide	N	MS	Pro	Glu	Val	Ser	Ala	Leu	Asp	Gln	Vidmar et al., 2017
40S ribosomal protein S17	P08708		peptide-Lys107+Leu-peptide	N	MS	Glu	Met	Leu	Lys	Leu	Leu	Asp	Phe	Vidmar et al., 2017
40S ribosomal protein S17	P08708		peptide-Lys72+Leu-peptide	N	MS	Ile	Ser	Ile	Lys	Leu	Gln	Glu	Glu	Vidmar et al., 2017
40S ribosomal protein S17	P08708		peptide-Asp92+Gln-peptide	N	MS	Ser	Ala	Leu	Asp	Gln	Glu	Ile	Ile	Vidmar et al., 2017
40S ribosomal protein S17	P08708		peptide-Gln74+Glu-peptide	N	MS	Ile	Lys	Leu	Gln	Glu	Glu	Glu	Arg	Vidmar et al., 2017
40S ribosomal protein S18	P62269		peptide-Ala100+Asn-peptide	N	MS	Gln	Val	Leu	Ala	Asn	Gly	Leu	Asp	Vidmar et al., 2017
40S ribosomal protein S18	P62269		peptide-Lys91+Asp-peptide	N	MS	Lys	Asp	Val	Lys	Asp	Gly	Lys	Tyr	Vidmar et al., 2017
40S ribosomal protein S18	P62269		peptide-Thr53+Lys-peptide	N	MS	Ile	Asp	Leu	Thr	Lys	Arg	Ala	Gly	Vidmar et al., 2017
40S ribosomal protein S18	P62269		peptide-Thr60+Glu-peptide	N	MS	Gly	Glu	Leu	Thr	Glu	Asp	Glu	Val	Vidmar et al., 2017
40S ribosomal protein S19	P39019		peptide-Lys111+Met-peptide	N	MS	Glu	Gly	Leu	Lys	Met	Val	Glu	Lys	Vidmar et al., 2017
40S ribosomal protein S19	P39019		peptide-Lys38+Leu-peptide	N	MS	Asp	Thr	Val	Lys	Leu	Ala	Lys	His	Vidmar et al., 2017
40S ribosomal protein S19	P39019		peptide-Gly127+Gln-peptide	N	MS	Thr	Pro	Gln	Gly	Gln	Arg	Asp	Leu	Vidmar et al., 2017
40S ribosomal protein S19	P39019		peptide-Lys7+Asp-peptide	N	MS	Val	Thr	Val	Lys	Asp	Val	Asn	Gln	Vidmar et al., 2017
40S ribosomal protein S19	P39019		peptide-Lys29+Val-peptide	N	MS	Gly	Lys	Leu	Lys	Val	Pro	Glu	Trp	Vidmar et al., 2017
40S ribosomal protein S2	P15880	90-108	Peptide-Gly99+Ala-Peptide	N	MS	Phe	Phe	Leu	Gly	Ala	Ser	Leu	Lys	Biniossek et al., 2011
40S ribosomal protein S20	P60866		peptide-His92+Ser-peptide	N	MS	Ile	Asp	Leu	His	Ser	Pro	Ser	Glu	Vidmar et al., 2017
40S ribosomal protein S20	P60866		peptide-Gly71+Glu-peptide	N	MS	Thr	Pro	Cys	Gly	Glu	Gly	Ser	Lys	Vidmar et al., 2017
40S ribosomal protein S21	P63220	28-45	Peptide-Met34+Asn-Peptide	N	MS	Ser	Ile	Gln	Met	Asn	Val	Ala	Glu	Biniossek et al., 2011
40S ribosomal protein S24	P62847	69-83	Peptide-Gly73+Met-Peptide	N	MS	Thr	Gly	Phe	Gly	Met	Ile	Tyr	Asp	Biniossek et al., 2011
40S ribosomal protein S24	P62847		peptide-Lys49+Thr-peptide	N	MS	Lys	Met	Tyr	Lys	Thr	Thr	Pro	Asp	Vidmar et al., 2017
40S ribosomal protein S3	P23396	28-40	Glu-Leu-Ala30+Glu-Peptide	N	MS	-	Glu	Leu	Ala	Glu	Asp	Gly	Tyr	Biniossek et al., 2011
40S ribosomal protein S3	P23396		peptide-Met189+Leu-peptide	N	MS	Val	Lys	Ile	Met	Leu	Pro	Trp	Asp	Vidmar et al., 2017
40S ribosomal protein S30	P62861	42-52	Phe-Val-Asn44+Val-Peptide	N	MS	-	Phe	Val	Asn	Val	Val	Pro	Thr	Biniossek et al., 2011
40S ribosomal protein S3a	P61247	95-107	Asn-Cys-Leu-Thr98+Asn-Peptide	N	MS	Asn	Cys	Leu	Thr	Asn	Phe	His	Gly	Biniossek et al., 2011
40S ribosomal protein S3a	P61247		peptide-Glu230+Leu-peptide	N	MS	Lys	Leu	Met	Glu	Leu	His	Gly	Glu	Vidmar et al., 2017
40S ribosomal protein S3a	P61247		peptide-Lys187+Leu-peptide	N	MS	Val	Val	Asn	Lys	Leu	Ile	Pro	Asp	Vidmar et al., 2017
40S ribosomal protein S3a	P61247		peptide-Lys182+Glu-peptide	N	MS	Asn	Asp	Leu	Lys	Glu	Val	Val	Asn	Vidmar et al., 2017
40S ribosomal protein S3a	P61247		peptide-Lys34+Ala-peptide	N	MS	Tyr	Asp	Val	Lys	Ala	Pro	Ala	Met	Vidmar et al., 2017
40S ribosomal protein S3a	P61247		peptide-Glu251+Arg-peptide	N	MS	Ala	Lys	Val	Glu	Arg	Ala	Asp	Gly	Vidmar et al., 2017
40S ribosomal protein S4, X isoform	P62701		peptide-Arg39+Glu-peptide	N	MS	His	Lys	Leu	Arg	Glu	Cys	Leu	Pro	Vidmar et al., 2017
40S ribosomal protein S5	P46782		peptide-Ala174+Asp-peptide	N	MS	Glu	Cys	Leu	Ala	Asp	Glu	Leu	Ile	Vidmar et al., 2017
40S ribosomal protein S5	P46782		peptide-Lys42+Glu-peptide	N	MS	Ile	Ala	Val	Lys	Glu	Lys	Tyr	Ala	Vidmar et al., 2017
40S ribosomal protein S5	P46782		peptide-Asn114+Ala-peptide	N	MS	Val	Leu	Val	Asn	Ala	Ile	Ile	Asn	Vidmar et al., 2017
40S ribosomal protein S5	P46782		peptide-Lys167+Thr-peptide	N	MS	Arg	Asn	Ile	Lys	Thr	Ile	Ala	Glu	Vidmar et al., 2017
40S ribosomal protein S5	P46782		peptide-Cys155+Thr-peptide	N	MS	Trp	Leu	Leu	Cys	Thr	Gly	Ala	Arg	Vidmar et al., 2017
40S ribosomal protein S5	P46782		peptide-Gly21+Lys-peptide	N	MS	Lys	Leu	Phe	Gly	Lys	Trp	Ser	Thr	Vidmar et al., 2017
40S ribosomal protein S5	P46782		peptide-Phe20+Gly-peptide	N	MS	Ile	Lys	Leu	Phe	Gly	Lys	Trp	Ser	Vidmar et al., 2017
40S ribosomal protein S5	P46782		peptide-Arg62+Lys-peptide	N	MS	Lys	Arg	Phe	Arg	Lys	Ala	Gln	Cys	Vidmar et al., 2017
40S ribosomal protein S7	P62081		peptide-Thr123+Ala-peptide	N	MS	Arg	Thr	Leu	Thr	Ala	Val	His	Asp	Vidmar et al., 2017
40S ribosomal protein S7	P62081		peptide-Glu29+Leu-peptide	N	MS	Ala	Leu	Leu	Glu	Leu	Glu	Met	Asn	Vidmar et al., 2017
40S ribosomal protein S7	P62081		peptide-His126+Asp-peptide	N	MS	Thr	Ala	Val	His	Asp	Ala	Ile	Leu	Vidmar et al., 2017
40S ribosomal protein S7	P62081		peptide-Thr181+Gly-peptide	N	MS	Lys	Lys	Leu	Thr	Gly	Lys	Asp	Val	Vidmar et al., 2017
40S ribosomal protein S8	P62241	27-37	Tyr-Glu28+Leu-Peptide	N	MS	-	-	Tyr	Glu	Leu	Gly	Arg	Pro	Biniossek et al., 2011
40S ribosomal protein SA	P08865		peptide-Gln9+Met-peptide	N	MS	Asp	Val	Leu	Gln	Met	Lys	Glu	Glu	Vidmar et al., 2017
40S ribosomal protein SA	P08865		peptide-Arg184+Met-peptide	N	MS	Glu	Val	Leu	Arg	Met	Arg	Gly	Thr	Vidmar et al., 2017
40S ribosomal protein SA	P08865		peptide-Thr125+Asp-peptide	N	MS	Leu	Val	Val	Thr	Asp	Pro	Arg	Ala	Vidmar et al., 2017
40S ribosomal protein SA	P08865		peptide-Gly95+Ala-peptide	N	MS	Ala	Ala	Thr	Gly	Ala	Thr	Pro	Ile	Vidmar et al., 2017
40S ribosomal protein SA	P08865		peptide-Arg205+Asp-peptide	N	MS	Tyr	Phe	Tyr	Arg	Asp	Pro	Glu	Glu	Vidmar et al., 2017
40S ribosomal protein SA	P08865		peptide-Leu122+Val-peptide	N	MS	Pro	Arg	Leu	Leu	Val	Val	Thr	Asp	Vidmar et al., 2017
40S ribosomal protein SA	P08865		peptide-Tyr202+Phe-peptide	N	MS	Pro	Asp	Leu	Tyr	Phe	Tyr	Arg	Asp	Vidmar et al., 2017
40S ribosomal protein SA	P08865		peptide-Val123+Val-peptide	N	MS	Arg	Leu	Leu	Val	Val	Thr	Asp	Pro	Vidmar et al., 2017
40S ribosomal protein SA	P08865		peptide-Ala67+Ile-peptide	N	MS	Ala	Ile	Val	Ala	Ile	Glu	Asn	Pro	Vidmar et al., 2017
40S ribosomal protein SA	P08865		peptide-Gly101+Arg-peptide	N	MS	Pro	Ile	Ala	Gly	Arg	Phe	Thr	Pro	Vidmar et al., 2017
6-phosphofructokinase type C	Q01813	162-193	Peptide-Thr184+IIe-Peptide	N	MS	Thr	Asp	Met	Thr	Ile	Gly	Thr	Asp	Biniossek et al., 2011
6-phosphofructokinase type C	Q01813	614-625	Asp-Leu-Gln616+Ser-Peptide	N	MS	-	Asp	Leu	Gln	Ser	Asn	Val	Glu	Biniossek et al., 2011
6-phosphogluconate dehydrogenase, decarboxylating	P52209	164-184	Peptide-Gly175+Asp-Peptide	N	MS	Asp	Trp	Val	Gly	Asp	Glu	Gly	Ala	Biniossek et al., 2011
6-phosphogluconate dehydrogenase, decarboxylating	P52209	120-136	Peptide-Gly125+Ser-Peptide	N	MS	Leu	Phe	Val	Gly	Ser	Gly	Val	Ser	Biniossek et al., 2011
6-phosphogluconate dehydrogenase, decarboxylating	P52209		peptide-Leu92+Asp-peptide	N	MS	Val	Pro	Leu	Leu	Asp	Thr	Gly	Asp	Vidmar et al., 2017
6-phosphogluconate dehydrogenase, decarboxylating	P52209		peptide-Lys76+Ala-peptide	N	MS	Leu	Leu	Val	Lys	Ala	Gly	Gln	Ala	Vidmar et al., 2017
6-phosphogluconolactonase	O95336		peptide-Cys237+Trp-peptide	N	MS	Gly	Lys	Leu	Cys	Trp	Phe	Leu	Asp	Vidmar et al., 2017
6-phosphogluconolactonase	O95336		peptide-Lys213+Arg-peptide	N	MS	Ala	Val	Leu	Lys	Arg	Ile	Leu	Glu	Vidmar et al., 2017
6-phosphogluconolactonase	O95336		peptide-Gln166+Glu-peptide	N	MS	Pro	Leu	Leu	Gln	Glu	Arg	Glu	Lys	Vidmar et al., 2017
60 kDa heat shock protein, mitochondrial	P10809	315-344	Peptide-Glu335+Asp-Peptide	N	MS	Leu	Asn	Leu	Glu	Asp	Val	Gln	Pro	Biniossek et al., 2011
60 kDa heat shock protein, mitochondrial	P10809	494-516	Peptide-Ala507+Gly-Peptide	N	MS	Asp	Ala	Met	Ala	Gly	Asp	Phe	Val	Biniossek et al., 2011
60 kDa heat shock protein, mitochondrial	P10809	406-417	Val-Gly407+Gly-Peptide	N	MS	-	-	Val	Gly	Gly	Thr	Ser	Asp	Biniossek et al., 2011
60 kDa heat shock protein, mitochondrial	P10809	371-389	Peptide-Thr381+Thr-Peptide	N	MS	Leu	Asp	Val	Thr	Thr	Ser	Glu	Tyr	Biniossek et al., 2011
60 kDa heat shock protein, mitochondrial	P10809		peptide-Thr54+Met-peptide	N	MS	Val	Ala	Val	Thr	Met	Gly	Pro	Lys	Vidmar et al., 2017
60 kDa heat shock protein, mitochondrial	P10809		peptide-Thr547+Glu-peptide	N	MS	Val	Val	Val	Thr	Glu	Ile	Pro	Lys	Vidmar et al., 2017
60 kDa heat shock protein, mitochondrial	P10809		peptide-Thr163+Thr-peptide	N	MS	Lys	Pro	Val	Thr	Thr	Pro	Glu	Glu	Vidmar et al., 2017
60 kDa heat shock protein, mitochondrial	P10809		peptide-Asp452+Ser-peptide	N	MS	Pro	Ala	Leu	Asp	Ser	Leu	Thr	Pro	Vidmar et al., 2017
60 kDa heat shock protein, mitochondrial	P10809		peptide-Met145+Leu-peptide	N	MS	Arg	Gly	Val	Met	Leu	Ala	Val	Asp	Vidmar et al., 2017
60 kDa heat shock protein, mitochondrial	P10809		peptide-Lys202+Asp-peptide	N	MS	Ile	Thr	Val	Lys	Asp	Gly	Lys	Thr	Vidmar et al., 2017
60 kDa heat shock protein, mitochondrial	P10809		peptide-Glu515+Lys-peptide	N	MS	Asn	Met	Val	Glu	Lys	Gly	Ile	Ile	Vidmar et al., 2017
60S acidic ribosomal protein P0	P05388	167-214	Peptide-Leu204+Asp-Peptide	N	MS	Pro	Glu	Val	Leu	Asp	Ile	Thr	Glu	Biniossek et al., 2011
60S acidic ribosomal protein P0	P05388		peptide-Phe193+Asp-peptide	N	MS	Gln	Gln	Val	Phe	Asp	Asn	Gly	Ser	Vidmar et al., 2017
60S acidic ribosomal protein P0	P05388		peptide-Arg62+Lys-peptide	N	MS	Thr	Met	Met	Arg	Lys	Ala	Ile	Arg	Vidmar et al., 2017
60S acidic ribosomal protein P0	P05388		peptide-Gly129+Leu-peptide	N	MS	Gln	Asn	Thr	Gly	Leu	Gly	Pro	Glu	Vidmar et al., 2017
60S acidic ribosomal protein P0	P05388		peptide-Ala235+Ser-peptide	N	MS	Pro	Thr	Val	Ala	Ser	Val	Pro	His	Vidmar et al., 2017
60S acidic ribosomal protein P0	P05388		peptide-Gly87+Phe-peptide	N	MS	Gly	Asn	Val	Gly	Phe	Val	Phe	Thr	Vidmar et al., 2017
60S acidic ribosomal protein P0	P05388		peptide-Gln190+Gln-peptide	N	MS	Leu	Val	Ile	Gln	Gln	Val	Phe	Asp	Vidmar et al., 2017
60S acidic ribosomal protein P0	P05388		peptide-Lys92+Glu-peptide	N	MS	Val	Phe	Thr	Lys	Glu	Asp	Leu	Thr	Vidmar et al., 2017
60S acidic ribosomal protein P1	P05386	50-61	Peptide-Ala52+Asn-Peptide	N	MS	-	Ala	Leu	Ala	Asn	Val	Asn	Ile	Biniossek et al., 2011
60S acidic ribosomal protein P2	P05387	3-21	Peptide-Ala10+Ala-Peptide	N	MS	Tyr	Leu	Leu	Ala	Ala	Leu	Gly	Gly	Biniossek et al., 2011
60S acidic ribosomal protein P2	P05387	62-95	Peptide-Gly85+Ser-Peptide	N	MS	Pro	Ala	Ala	Gly	Ser	Ala	Pro	Ala	Biniossek et al., 2011
60S acidic ribosomal protein P2	P05387	26-38	IIe-Leu-Asp28+Ser-Peptide	N	MS	-	Ile	Leu	Asp	Ser	Val	Gly	Ile	Biniossek et al., 2011
60S acidic ribosomal protein P2	P05387		peptide-Gly31+Ile-peptide	N	MS	Asp	Ser	Val	Gly	Ile	Glu	Ala	Asp	Vidmar et al., 2017
60S ribosomal protein L10a	P62906	134-147	Peptide-Leu138+Thr-Peptide	N	MS	Pro	Ser	Leu	Leu	Thr	His	Asn	Glu	Biniossek et al., 2011
60S ribosomal protein L10a	P62906		peptide-Asn129+Lys-peptide	N	MS	Pro	Gly	Leu	Asn	Lys	Ala	Gly	Lys	Vidmar et al., 2017
60S ribosomal protein L12	P30050		peptide-Lys99+His-peptide	N	MS	Lys	Asn	Ile	Lys	His	Ser	Gly	Asn	Vidmar et al., 2017
60S ribosomal protein L12	P30050		peptide-Asn142+Val-peptide	N	MS	Val	Gly	Cys	Asn	Val	Asp	Gly	Arg	Vidmar et al., 2017
60S ribosomal protein L12	P30050		peptide-Asp144+Gly-peptide	N	MS	Cys	Asn	Val	Asp	Gly	Arg	His	Pro	Vidmar et al., 2017
60S ribosomal protein L12	P30050		peptide-Gly140+Cys-peptide	N	MS	Gln	Ser	Val	Gly	Cys	Asn	Val	Asp	Vidmar et al., 2017
60S ribosomal protein L12	P30050		peptide-Gly23+Ala-peptide	N	MS	Gly	Glu	Val	Gly	Ala	Thr	Ser	Ala	Vidmar et al., 2017
60S ribosomal protein L14	P50914	24-35	Leu-Val-Ala26+IIe-Peptide	N	MS	-	Leu	Val	Ala	Ile	Val	Asp	Val	Biniossek et al., 2011
60S ribosomal protein L14	P50914		peptide-Ser16+Phe-peptide	N	MS	Ala	Tyr	Val	Ser	Phe	Gly	Pro	His	Vidmar et al., 2017
60S ribosomal protein L15	P61313	115-128	Val-Leu-Asn117+Ser-Peptide	N	MS	-	Val	Leu	Asn	Ser	Tyr	Trp	Val	Biniossek et al., 2011
60S ribosomal protein L21	P46778		peptide-Arg142+Thr-peptide	N	MS	His	Phe	Val	Arg	Thr	Asn	Gly	Lys	Vidmar et al., 2017
60S ribosomal protein L23	P62829	16-35	Peptide-Gly23+Ala-Peptide	N	MS	Leu	Pro	Val	Gly	Ala	Val	Ile	Asn	Biniossek et al., 2011
60S ribosomal protein L23	P62829	92-109	Peptide-Glu99+Asp-Peptide	N	MS	Leu	Tyr	Phe	Glu	Asp	Asn	Ala	Gly	Biniossek et al., 2011
60S ribosomal protein L23	P62829		peptide-Lys123+Glu-peptide	N	MS	Pro	Val	Ala	Lys	Glu	Cys	Ala	Asp	Vidmar et al., 2017
60S ribosomal protein L23	P62829		peptide-Ala122+Lys-peptide	N	MS	Gly	Pro	Val	Ala	Lys	Glu	Cys	Ala	Vidmar et al., 2017
60S ribosomal protein L26-like 1	Q9UNX3		peptide-Arg45+Ser-peptide	N	MS	Tyr	Asn	Val	Arg	Ser	Met	Pro	Ile	Vidmar et al., 2017
60S ribosomal protein L27	P61353	74-84	Val-Tyr-Asn76+Tyr-Peptide	N	MS	-	Val	Tyr	Asn	Tyr	Asn	His	Leu	Biniossek et al., 2011
60S ribosomal protein L27a	P46776	95-105	Thr-Gly96+Ala-Peptide	N	MS	-	-	Thr	Gly	Ala	Ala	Pro	Ile	Biniossek et al., 2011
60S ribosomal protein L29	P47914	135-149	Ala-Gln-Ala-Ala138+Ala-Peptide	N	MS	Ala	Gln	Ala	Ala	Ala	Pro	Ala	Ser	Biniossek et al., 2011
60S ribosomal protein L3	P39023	104-115	Thr-Val-Phe106+Ala-Peptide	N	MS	-	Thr	Val	Phe	Ala	Glu	His	Ile	Biniossek et al., 2011
60S ribosomal protein L3	P39023	104-115	Thr-Val-Phe-Ala107+Glu-Peptide	N	MS	Thr	Val	Phe	Ala	Glu	His	Ile	Ser	Biniossek et al., 2011
60S ribosomal protein L3	P39023	178-193	Ala-His-Leu-Met181+Glu-Peptide	N	MS	Ala	His	Leu	Met	Glu	Ile	Gln	Val	Biniossek et al., 2011
60S ribosomal protein L30	P62888	91-106	Peptide-Ala95+IIe-Peptide	N	MS	Cys	Thr	Leu	Ala	Ile	Ile	Asp	Pro	Biniossek et al., 2011
60S ribosomal protein L30	P62888		peptide-Thr93+Leu-peptide	N	MS	Arg	Val	Cys	Thr	Leu	Ala	Ile	Ile	Vidmar et al., 2017
60S ribosomal protein L31	P62899		peptide-Arg87+Leu-peptide	N	MS	Ile	Arg	Val	Arg	Leu	Ser	Arg	Lys	Vidmar et al., 2017
60S ribosomal protein L31	P62899		peptide-Gly58+Thr-peptide	N	MS	Lys	Glu	Met	Gly	Thr	Pro	Asp	Val	Vidmar et al., 2017
60S ribosomal protein L32	P62910	94-106	Ser-Tyr-Cys96+Ala-Peptide	N	MS	-	Ser	Tyr	Cys	Ala	Glu	Ile	Ala	Biniossek et al., 2011
60S ribosomal protein L36a-like	Q969Q0	45-57	Peptide-Gly49+Gly-Peptide	N	MS	Ser	Gly	Tyr	Gly	Gly	Gln	Thr	Lys	Biniossek et al., 2011
60S ribosomal protein L4	P36578	50-71	Peptide-Ala58+Gly-Peptide	N	MS	Ser	Glu	Leu	Ala	Gly	His	Gln	Thr	Biniossek et al., 2011
60S ribosomal protein L4	P36578		peptide-Lys327+Leu-peptide	N	MS	Ile	Met	Leu	Lys	Leu	Asn	Pro	Tyr	Vidmar et al., 2017
60S ribosomal protein L4	P36578		peptide-Lys175+Ala-peptide	N	MS	Lys	Lys	Leu	Lys	Ala	Trp	Asn	Asp	Vidmar et al., 2017
60S ribosomal protein L4	P36578		peptide-Arg350+Val-peptide	N	MS	His	Lys	Leu	Arg	Val	Asp	Lys	Ala	Vidmar et al., 2017
60S ribosomal protein L4	P36578		peptide-Phe28+Lys-peptide	N	MS	Pro	Ala	Val	Phe	Lys	Ala	Pro	Ile	Vidmar et al., 2017
60S ribosomal protein L4	P36578		peptide-Ser55+Glu-peptide	N	MS	Tyr	Ala	Val	Ser	Glu	Leu	Ala	Gly	Vidmar et al., 2017
60S ribosomal protein L4	P36578		peptide-Gln203+Arg-peptide	N	MS	Arg	Arg	Ile	Gln	Arg	Arg	Gly	Pro	Vidmar et al., 2017
60S ribosomal protein L5	P46777	69-85	Peptide-Cys76+Ala-Peptide	N	MS	Met	Ile	Val	Cys	Ala	Ala	Tyr	Ala	Biniossek et al., 2011
60S ribosomal protein L5	P46777	210-221	Tyr-Leu-Met-Glu213+Glu-Peptide	N	MS	Tyr	Leu	Met	Glu	Glu	Asp	Glu	Asp	Biniossek et al., 2011
60S ribosomal protein L5	P46777	210-221	Tyr-Leu-Met212+Glu-Peptide	N	MS	-	Tyr	Leu	Met	Glu	Glu	Asp	Glu	Biniossek et al., 2011
60S ribosomal protein L6	Q02878		peptide-Thr278+Asn-peptide	N	MS	Phe	Ala	Leu	Thr	Asn	Gly	Ile	Tyr	Vidmar et al., 2017
60S ribosomal protein L6	Q02878		peptide-Arg110+Lys-peptide	N	MS	Val	Lys	Leu	Arg	Lys	Met	Pro	Arg	Vidmar et al., 2017
60S ribosomal protein L7	P18124	224-242	Peptide-Glu229+Gly-Peptide	N	MS	His	Phe	Val	Glu	Gly	Gly	Asp	Ala	Biniossek et al., 2011
60S ribosomal protein L7a	P62424	198-217	Peptide-Thr205+Gln-Peptide	N	MS	Val	Ala	Phe	Thr	Gln	Val	Asn	Ser	Biniossek et al., 2011
60S ribosomal protein L7a	P62424		peptide-Gly40+Ile-peptide	N	MS	Lys	Asn	Phe	Gly	Ile	Gly	Gln	Asp	Vidmar et al., 2017
60S ribosomal protein L7a	P62424		peptide-Lys20+Lys-peptide	N	MS	Ala	Val	Val	Lys	Lys	Gln	Glu	Ala	Vidmar et al., 2017
60S ribosomal protein L9	P32969	72-82	Thr-IIe-Cys-Ser75+His-Peptide	N	MS	Thr	Ile	Cys	Ser	His	Val	Gln	Asn	Biniossek et al., 2011
60S ribosomal protein L9	P32969		peptide-Ser137+Gln-peptide	N	MS	Cys	Ser	Val	Ser	Gln	Ala	Gln	Lys	Vidmar et al., 2017
78 kDa glucose-regulated protein	P11021	602-617	Peptide-Glu606+Ser-Peptide	N	MS	Glu	Trp	Leu	Glu	Ser	His	Gln	Asp	Biniossek et al., 2011
78 kDa glucose-regulated protein	P11021	82-96	Asn-Gln-Leu-Thr85+Ser-Peptide	N	MS	Asn	Gln	Leu	Thr	Ser	Asn	Pro	Glu	Biniossek et al., 2011
78 kDa glucose-regulated protein	P11021	448-464	Peptide-Ser452+Thr-Peptide	N	MS	Gln	Ile	Phe	Ser	Thr	Ala	Ser	Asp	Biniossek et al., 2011
Acetyl-CoA acetyltransferase, mitochondrial	P24752	88-105	Peptide-Leu95+Gln-Peptide	N	MS	Gly	Asn	Val	Leu	Gln	Gly	Gly	Glu	Biniossek et al., 2011
Acidic leucine-rich nuclear phosphoprotein 32 family member B	Q92688		peptide-Ala84+Glu-peptide	N	MS	Asp	Met	Leu	Ala	Glu	Lys	Leu	Pro	Vidmar et al., 2017
Acidic leucine-rich nuclear phosphoprotein 32 family member B	Q92688		peptide-Glu70+Leu-peptide	N	MS	Lys	Lys	Leu	Glu	Leu	Ser	Glu	Asn	Vidmar et al., 2017
Acidic leucine-rich nuclear phosphoprotein 32 family member B	Q92688		peptide-Lys116+Ser-peptide	N	MS	Glu	Cys	Leu	Lys	Ser	Leu	Asp	Leu	Vidmar et al., 2017
Acidic leucine-rich nuclear phosphoprotein 32 family member B	Q92688		peptide-Lys28+Ser-peptide	N	MS	Asp	Asn	Cys	Lys	Ser	Asn	Asp	Gly	Vidmar et al., 2017
Actin, alpha skeletal muscle	P68133	294-314	Peptide-Thr306+Met-Peptide	N	MS	Gly	Gly	Thr	Thr	Met	Tyr	Pro	Gly	Biniossek et al., 2011
Actin, alpha skeletal muscle	P68133		peptide-Lys70+Tyr-peptide	N	MS	Leu	Thr	Leu	Lys	Tyr	Pro	Ile	Glu	Vidmar et al., 2017
Actin, alpha skeletal muscle	P68133		peptide-Thr68+Leu-peptide	N	MS	Gly	Ile	Leu	Thr	Leu	Lys	Tyr	Pro	Vidmar et al., 2017
Actin, cytoplasmic 1	P60709	69-84	Peptide-Thr77+Asn-Peptide	N	MS	Gly	Ile	Val	Thr	Asn	Trp	Asp	Asp	Biniossek et al., 2011
Actin, cytoplasmic 1	P60709	257-279	Peptide-Glu270+Ser-Peptide	N	MS	Leu	Gly	Met	Glu	Ser	Cys	Gly	Ile	Biniossek et al., 2011
Actin, cytoplasmic 2	P63261		peptide-Lys328+Ile-peptide	N	MS	Met	Lys	Ile	Lys	Ile	Ile	Ala	Pro	Vidmar et al., 2017
Actin, cytoplasmic 2	P63261		peptide-Arg95+Val-peptide	N	MS	Asn	Glu	Leu	Arg	Val	Ala	Pro	Glu	Vidmar et al., 2017
Actin, cytoplasmic 2	P63261		peptide-Asp179+Leu-peptide	N	MS	Leu	Arg	Leu	Asp	Leu	Ala	Gly	Arg	Vidmar et al., 2017
Actin, cytoplasmic 2	P63261		peptide-Gly23+Asp-peptide	N	MS	Gly	Phe	Ala	Gly	Asp	Asp	Ala	Pro	Vidmar et al., 2017
Actin, cytoplasmic 2	P63261		peptide-Met283+Lys-peptide	N	MS	Asn	Ser	Ile	Met	Lys	Cys	Asp	Val	Vidmar et al., 2017
Actin, cytoplasmic 2	P63261		peptide-Tyr143+Ala-peptide	N	MS	Leu	Ser	Leu	Tyr	Ala	Ser	Gly	Arg	Vidmar et al., 2017
Actin, cytoplasmic 2	P63261		peptide-Thr202+Thr-peptide	N	MS	Ser	Phe	Thr	Thr	Thr	Ala	Glu	Arg	Vidmar et al., 2017
Actin, cytoplasmic 2	P63261		peptide-Ile330+Ala-peptide	N	MS	Ile	Lys	Ile	Ile	Ala	Pro	Pro	Glu	Vidmar et al., 2017
Actin, cytoplasmic 2	P63261		peptide-Gly36+Arg-peptide	N	MS	Ser	Ile	Val	Gly	Arg	Pro	Arg	His	Vidmar et al., 2017
Actin, cytoplasmic 2	P63261		peptide-Ala144+Ser-peptide	N	MS	Ser	Leu	Tyr	Ala	Ser	Gly	Arg	Thr	Vidmar et al., 2017
Actin, cytoplasmic 2	P63261		peptide-Ala22+Gly-peptide	N	MS	Ala	Gly	Phe	Ala	Gly	Asp	Asp	Ala	Vidmar et al., 2017
Actin, cytoplasmic 2	P63261		peptide-Ser141+Leu-peptide	N	MS	Ala	Val	Leu	Ser	Leu	Tyr	Ala	Ser	Vidmar et al., 2017
Actin, cytoplasmic 2	P63261		peptide-Gly46+Met-peptide	N	MS	Val	Met	Val	Gly	Met	Gly	Gln	Lys	Vidmar et al., 2017
Actin, cytoplasmic 2	P63261		peptide-Lys284+Cys-peptide	N	MS	Ser	Ile	Met	Lys	Cys	Asp	Val	Asp	Vidmar et al., 2017
Actin, cytoplasmic 2	P63261		peptide-Gly273+Ile-peptide	N	MS	Glu	Ser	Cys	Gly	Ile	His	Glu	Thr	Vidmar et al., 2017
Actin, cytoplasmic 2	P63261		peptide-Leu140+Ser-peptide	N	MS	Gln	Ala	Val	Leu	Ser	Leu	Tyr	Ala	Vidmar et al., 2017
Actin, cytoplasmic 2	P63261		peptide-Thr160+His-peptide	N	MS	Asp	Gly	Val	Thr	His	Thr	Val	Pro	Vidmar et al., 2017
Actin, cytoplasmic 2	P63261		peptide-Lys18+Ala-peptide	N	MS	Gly	Met	Cys	Lys	Ala	Gly	Phe	Ala	Vidmar et al., 2017
Actin, cytoplasmic 2	P63261		peptide-Thr77+Asn-peptide	N	MS	Gly	Ile	Val	Thr	Asn	Trp	Asp	Asp	Vidmar et al., 2017
Actin, cytoplasmic 2	P63261		peptide-Thr194+Glu-peptide	N	MS	Lys	Ile	Leu	Thr	Glu	Arg	Gly	Tyr	Vidmar et al., 2017
Actin, cytoplasmic 2	P63261		peptide-Thr318+Ala-peptide	N	MS	Lys	Glu	Ile	Thr	Ala	Leu	Ala	Pro	Vidmar et al., 2017
Actin, cytoplasmic 2	P63261		peptide-Tyr306+Pro-peptide	N	MS	Thr	Thr	Met	Tyr	Pro	Gly	Ile	Ala	Vidmar et al., 2017
Actin, cytoplasmic 2	P63261		peptide-Arg177+Leu-peptide	N	MS	Ala	Ile	Leu	Arg	Leu	Asp	Leu	Ala	Vidmar et al., 2017
Actin, cytoplasmic 2	P63261		peptide-Arg210+Asp-peptide	N	MS	Glu	Ile	Val	Arg	Asp	Ile	Lys	Glu	Vidmar et al., 2017
Actin, cytoplasmic 2	P63261		peptide-Thr304+Met-peptide	N	MS	Gly	Gly	Thr	Thr	Met	Tyr	Pro	Gly	Vidmar et al., 2017
Actin, cytoplasmic 2	P63261		peptide-Glu237+Lys-peptide	N	MS	Ser	Ser	Leu	Glu	Lys	Ser	Tyr	Glu	Vidmar et al., 2017
Actin, cytoplasmic 2	P63261		peptide-Ser300+Gly-peptide	N	MS	Thr	Val	Leu	Ser	Gly	Gly	Thr	Thr	Vidmar et al., 2017
Actin, cytoplasmic 2	P63261		peptide-Gly55+Asp-peptide	N	MS	Ser	Tyr	Val	Gly	Asp	Glu	Ala	Gln	Vidmar et al., 2017
Actin, cytoplasmic 2	P63261		peptide-Glu270+Ser-peptide	N	MS	Leu	Gly	Met	Glu	Ser	Cys	Gly	Ile	Vidmar et al., 2017
Actin, cytoplasmic 2	P63261		peptide-Leu299+Ser-peptide	N	MS	Asn	Thr	Val	Leu	Ser	Gly	Gly	Thr	Vidmar et al., 2017
Actin, cytoplasmic 2	P63261		peptide-Thr249+Ile-peptide	N	MS	Gln	Val	Ile	Thr	Ile	Gly	Asn	Glu	Vidmar et al., 2017
Actin, cytoplasmic 2	P63261		peptide-His87+His-peptide	N	MS	Lys	Ile	Trp	His	His	Thr	Phe	Tyr	Vidmar et al., 2017
Actin, cytoplasmic 2	P63261		peptide-Ala181+Gly-peptide	N	MS	Leu	Asp	Leu	Ala	Gly	Arg	Asp	Leu	Vidmar et al., 2017
Actin, cytoplasmic 2	P63261		peptide-Ala7+Leu-peptide	N	MS	Glu	Ile	Ala	Ala	Leu	Val	Ile	Asp	Vidmar et al., 2017
Actin, cytoplasmic 2	P63261		peptide-Glu83+Lys-peptide	N	MS	Asp	Asp	Met	Glu	Lys	Ile	Trp	His	Vidmar et al., 2017
Actin, cytoplasmic 2	P63261		peptide-Met305+Tyr-peptide	N	MS	Gly	Thr	Thr	Met	Tyr	Pro	Gly	Ile	Vidmar et al., 2017
Actin, cytoplasmic 2	P63261		peptide-Cys17+Lys-peptide	N	MS	Ser	Gly	Met	Cys	Lys	Ala	Gly	Phe	Vidmar et al., 2017
Actin, cytoplasmic 2	P63261		peptide-Thr201+Thr-peptide	N	MS	Tyr	Ser	Phe	Thr	Thr	Thr	Ala	Glu	Vidmar et al., 2017
Actin, cytoplasmic 2	P63261		peptide-Gly20+Phe-peptide	N	MS	Cys	Lys	Ala	Gly	Phe	Ala	Gly	Asp	Vidmar et al., 2017
Actin, cytoplasmic 2	P63261		peptide-Thr106+Glu-peptide	N	MS	Val	Leu	Leu	Thr	Glu	Ala	Pro	Leu	Vidmar et al., 2017
Actin, cytoplasmic 2	P63261		peptide-Gln353+Gln-peptide	N	MS	Ser	Thr	Phe	Gln	Gln	Met	Trp	Ile	Vidmar et al., 2017
Actin, cytoplasmic 2	P63261		peptide-Trp356+Ile-peptide	N	MS	Gln	Gln	Met	Trp	Ile	Ser	Lys	Gln	Vidmar et al., 2017
Actin, cytoplasmic 2	P63261		peptide-Lys50+Asp-peptide	N	MS	Met	Gly	Gln	Lys	Asp	Ser	Tyr	Val	Vidmar et al., 2017
Actin, cytoplasmic 2	P63261		peptide-Leu105+Thr-peptide	N	MS	Pro	Val	Leu	Leu	Thr	Glu	Ala	Pro	Vidmar et al., 2017
Actin, cytoplasmic 2	P63261		peptide-Gly48+Gln-peptide	N	MS	Val	Gly	Met	Gly	Gln	Lys	Asp	Ser	Vidmar et al., 2017
Actin, cytoplasmic 2	P63261		peptide-Ala228+Thr-peptide	N	MS	Gln	Glu	Met	Ala	Thr	Ala	Ala	Ser	Vidmar et al., 2017
Actin, cytoplasmic 2	P63261		peptide-Lys359+Gln-peptide	N	MS	Trp	Ile	Ser	Lys	Gln	Glu	Tyr	Asp	Vidmar et al., 2017
Actin-like protein 6A	O96019		peptide-His286+Tyr-peptide	N	MS	Pro	Thr	Val	His	Tyr	Glu	Phe	Pro	Vidmar et al., 2017
Actin-related protein 2	P61160		peptide-Ala23+Gly-peptide	N	MS	Cys	Gly	Tyr	Ala	Gly	Ser	Asn	Phe	Vidmar et al., 2017
Actin-related protein 2/3 complex subunit 2	O15144	66-77	Glu-Leu-Gln68+Ala-Peptide	N	MS	-	Glu	Leu	Gln	Ala	His	Gly	Ala	Biniossek et al., 2011
Actin-related protein 2/3 complex subunit 3	O15145		peptide-Asn114+Ala-peptide	N	MS	Phe	Pro	Leu	Asn	Ala	Ile	Tyr	Ala	Vidmar et al., 2017
Actin-related protein 2/3 complex subunit 3	O15145		peptide-Met9+Asp-peptide	N	MS	Ser	Ser	Leu	Met	Asp	Pro	Asp	Thr	Vidmar et al., 2017
Actin-related protein 2/3 complex subunit 5	O15511		peptide-Arg12+Lys-peptide	N	MS	Ala	Arg	Phe	Arg	Lys	Val	Asp	Val	Vidmar et al., 2017
Actin-related protein 3	P61158		peptide-Leu277+Gly-peptide	N	MS	Glu	Arg	Phe	Leu	Gly	Pro	Glu	Ile	Vidmar et al., 2017
Actin-related protein 3	P61158		peptide-Gly20+Tyr-peptide	N	MS	Thr	Lys	Leu	Gly	Tyr	Ala	Gly	Asn	Vidmar et al., 2017
Activated RNA polymerase II transcriptional coactivator p15	P53999	6-24	Peptide-Ser9+Ser-Peptide	N	MS	Glu	Leu	Val	Ser	Ser	Ser	Ser	Ser	Biniossek et al., 2011
Activated RNA polymerase II transcriptional coactivator p15	P53999		peptide-Trp89+Met-peptide	N	MS	Arg	Glu	Tyr	Trp	Met	Asp	Pro	Glu	Vidmar et al., 2017
Activated RNA polymerase II transcriptional coactivator p15	P53999		peptide-Lys114+Glu-peptide	N	MS	Ser	Gln	Leu	Lys	Glu	Gln	Ile	Ser	Vidmar et al., 2017
Activated RNA polymerase II transcriptional coactivator p15	P53999		peptide-Ser104+Leu-peptide	N	MS	Lys	Gly	Ile	Ser	Leu	Asn	Pro	Glu	Vidmar et al., 2017
Activator of 90 kDa heat shock protein ATPase homolog 1	O95433	250-268	Peptide-Ser258+Gly-Peptide	N	MS	Gly	Asn	Val	Ser	Gly	Glu	Phe	Thr	Biniossek et al., 2011
Activator of 90 kDa heat shock protein ATPase homolog 1	O95433		peptide-Leu216+Thr-peptide	N	MS	Glu	Thr	Phe	Leu	Thr	Ser	Pro	Glu	Vidmar et al., 2017
Adenine phosphoribosyltransferase	P07741		peptide-Arg14+Ser-peptide	N	MS	Gln	Arg	Ile	Arg	Ser	Phe	Pro	Asp	Vidmar et al., 2017
Adenosylhomocysteinase	P23526		peptide-Asn126+Met-peptide	N	MS	Gly	Pro	Leu	Asn	Met	Ile	Leu	Asp	Vidmar et al., 2017
Adenosylhomocysteinase	P23526		peptide-Gly18+Arg-peptide	N	MS	Ala	Ala	Trp	Gly	Arg	Lys	Ala	Leu	Vidmar et al., 2017
Adenylate kinase isoenzyme 4, mitochondrial	P27144	189-201	Gly-Val-Leu191+His-Peptide	N	MS	-	Gly	Val	Leu	His	Gln	Phe	Ser	Biniossek et al., 2011
Adenylosuccinate lyase	P30566		peptide-Gly54+Leu-peptide	N	MS	Gln	Thr	Leu	Gly	Leu	Pro	Ile	Thr	Vidmar et al., 2017
Adenylyl cyclase-associated protein 1	Q01518	85-100	Peptide-Thr89+Ala-Peptide	N	MS	Leu	Leu	Val	Thr	Ala	Ser	Gln	Cys	Biniossek et al., 2011
Adenylyl cyclase-associated protein 1	Q01518		peptide-Lys60+Ile-peptide	N	MS	Glu	Tyr	Leu	Lys	Ile	Ser	Lys	Glu	Vidmar et al., 2017
Adenylyl cyclase-associated protein 1	Q01518		peptide-Leu440+Ile-peptide	N	MS	Met	Asn	Val	Leu	Ile	Pro	Thr	Glu	Vidmar et al., 2017
Adipocyte plasma membrane-associated protein	Q9HDC9		peptide-Lys123+Leu-peptide	N	MS	Arg	Val	Val	Lys	Leu	Glu	Asn	Gly	Vidmar et al., 2017
ADP-ribosylation factor 1	P84077		peptide-Tyr167+Glu-peptide	N	MS	Asp	Gly	Leu	Tyr	Glu	Gly	Leu	Asp	Vidmar et al., 2017
ADP-ribosylation factor 4	P18085		peptide-Tyr167+Glu-peptide	N	MS	Thr	Gly	Leu	Tyr	Glu	Gly	Leu	Asp	Vidmar et al., 2017
ADP-sugar pyrophosphatase	Q9UKK9	1-14	Met-Glu2+Ser-Peptide	N	MS	-	-	Met	Glu	Ser	Gln	Glu	Pro	Biniossek et al., 2011
ADP-sugar pyrophosphatase	Q9UKK9		peptide-Cys91+Ile-peptide	N	MS	Gly	Gly	Tyr	Cys	Ile	Glu	Phe	Pro	Vidmar et al., 2017
ADP/ATP translocase 2	P05141		peptide-Ala142+Ala-peptide	N	MS	Thr	Arg	Leu	Ala	Ala	Asp	Val	Gly	Vidmar et al., 2017
ADP/ATP translocase 3	P12236		peptide-Ala142+Ala-peptide	N	MS	Thr	Arg	Leu	Ala	Ala	Asp	Val	Gly	Vidmar et al., 2017
ADP/ATP translocase 3	P12236		peptide-Ala18+Ala-peptide	N	MS	Gly	Gly	Ile	Ala	Ala	Ala	Ile	Ser	Vidmar et al., 2017
ADP/ATP translocase 3	P12236		peptide-Leu68+Ser-peptide	N	MS	Gln	Gly	Val	Leu	Ser	Phe	Trp	Arg	Vidmar et al., 2017
Advillin	O75366	24-44	Peptide-Ser32+Ala-Peptide	N	MS	Val	Pro	Val	Ser	Ala	His	Gly	Asn	Biniossek et al., 2011
AF4/FMR2 family member 1	P51825	1087-1100	Val-Ala-Gln1089+Ala-Peptide	N	MS	-	Val	Ala	Gln	Ala	Pro	Ser	Pro	Biniossek et al., 2011
Alcohol dehydrogenase class-3	P11766	342-357	Peptide-Thr347+His-Peptide	N	MS	Glu	Phe	Val	Thr	His	Asn	Leu	Ser	Biniossek et al., 2011
Aldehyde dehydrogenase X, mitochondrial	P30837	258-272	Peptide-Thr261+Gly-Peptide	N	MS	Val	Ala	Phe	Thr	Gly	Ser	Thr	Glu	Biniossek et al., 2011
Aldehyde dehydrogenase X, mitochondrial	P30837	258-272	Peptide-Gly262+Ser-Peptide	N	MS	Ala	Phe	Thr	Gly	Ser	Thr	Glu	Val	Biniossek et al., 2011
Alpha-actinin-4	O43707	127-140	Leu-Val-Ser128+IIe-Peptide	N	MS	-	Leu	Val	Ser	Ile	Gly	Ala	Glu	Biniossek et al., 2011
Alpha-actinin-4	O43707	351-363	Cys-Gln-Leu-Glu354+IIe-Peptide	N	MS	Cys	Gln	Leu	Glu	Ile	Asn	Phe	Asn	Biniossek et al., 2011
Alpha-actinin-4	O43707	218-233	Peptide-Asn225+Asn-Peptide	N	MS	Thr	Asn	Leu	Asn	Asn	Ala	Phe	Glu	Biniossek et al., 2011
Alpha-aminoadipic semialdehyde dehydrogenase	P49419	336-349	Peptide-His339+Glu-Peptide	N	MS	Leu	Phe	Ile	His	Glu	Ser	Ile	His	Biniossek et al., 2011
Alpha-aminoadipic semialdehyde dehydrogenase	P49419	336-339	Peptide-Glu340+Ser-Peptide	N	MS	Phe	Ile	His	Glu	Ser	Ile	His	Asp	Biniossek et al., 2011
Alpha-aminoadipic semialdehyde synthase, mitochondrial	Q9UDR5	334-348	Peptide-Glu340+Gly-Peptide	N	MS	Ala	Gly	Val	Glu	Gly	Cys	Pro	Ala	Biniossek et al., 2011
Alpha-centractin	P61163		peptide-Met48+Ala-peptide	N	MS	Val	Arg	Val	Met	Ala	Gly	Ala	Leu	Vidmar et al., 2017
Alpha-centractin	P61163		peptide-Arg329+Ile-peptide	N	MS	Val	Lys	Ile	Arg	Ile	Ser	Ala	Pro	Vidmar et al., 2017
Alpha-centractin	P61163		peptide-Ala8+Asn-peptide	N	MS	Asp	Val	Ile	Ala	Asn	Gln	Pro	Val	Vidmar et al., 2017
Alpha-endosulfine	O43768	90-106	Asn-Leu-Val-Thr93+Gly-Peptide	N	MS	Asn	Leu	Val	Thr	Gly	Asp	His	Ile	Biniossek et al., 2011
Alpha-enolase	P06733	203-221	Peptide-Gly208+Asp-Peptide	N	MS	Thr	Asn	Val	Gly	Asp	Glu	Gly	Gly	Biniossek et al., 2011
Alpha-enolase	P06733	240-253	Peptide-Asp245+Val-Peptide	N	MS	Ile	Gly	Met	Asp	Val	Ala	Ala	Ser	Biniossek et al., 2011
Alpha-enolase	P06733		peptide-Ser291+Ile-peptide	N	MS	Pro	Val	Val	Ser	Ile	Glu	Asp	Pro	Vidmar et al., 2017
Alpha-enolase	P06733		peptide-Lys262+Ser-peptide	N	MS	Leu	Asp	Phe	Lys	Ser	Pro	Asp	Asp	Vidmar et al., 2017
Alpha-enolase	P06733		peptide-Arg253+Ser-peptide	N	MS	Glu	Phe	Phe	Arg	Ser	Gly	Lys	Tyr	Vidmar et al., 2017
Alpha-enolase	P06733		peptide-Lys197+Glu-peptide	N	MS	Asn	Val	Ile	Lys	Glu	Lys	Tyr	Gly	Vidmar et al., 2017
Alpha-enolase	P06733		peptide-Lys193+Asn-peptide	N	MS	His	Asn	Leu	Lys	Asn	Val	Ile	Lys	Vidmar et al., 2017
Alpha-enolase	P06733		peptide-Lys5+Ile-peptide	N	MS	Ser	Ile	Leu	Lys	Ile	His	Ala	Arg	Vidmar et al., 2017
Alpha-enolase	P06733		peptide-Asn83+Val-peptide	N	MS	Lys	Lys	Leu	Asn	Val	Thr	Glu	Gln	Vidmar et al., 2017
Alpha-enolase	P06733		peptide-Lys120+Ala-peptide	N	MS	Ala	Val	Cys	Lys	Ala	Gly	Ala	Val	Vidmar et al., 2017
Alpha-enolase	P06733		peptide-Gly317+Asp-peptide	N	MS	Gln	Val	Val	Gly	Asp	Asp	Leu	Thr	Vidmar et al., 2017
Alpha-enolase	P06733		peptide-Val78+Ser-peptide	N	MS	Pro	Ala	Leu	Val	Ser	Lys	Lys	Leu	Vidmar et al., 2017
Alpha-enolase	P06733		peptide-Ile144+Leu-peptide	N	MS	Ser	Glu	Val	Ile	Leu	Pro	Val	Pro	Vidmar et al., 2017
Alpha-enolase	P06733		peptide-Glu48+Leu-peptide	N	MS	Glu	Ala	Leu	Glu	Leu	Arg	Asp	Asn	Vidmar et al., 2017
Alpha-enolase	P06733		peptide-Gly201+Lys-peptide	N	MS	Glu	Lys	Tyr	Gly	Lys	Asp	Ala	Thr	Vidmar et al., 2017
Alpha-enolase	P06733		peptide-Gly232+Lys-peptide	N	MS	Thr	Ala	Ile	Gly	Lys	Ala	Gly	Tyr	Vidmar et al., 2017
Alpha-enolase	P06733		peptide-Asp297+Gln-peptide	N	MS	Asp	Pro	Phe	Asp	Gln	Asp	Asp	Trp	Vidmar et al., 2017
Alpha-enolase	P06733		peptide-Lys330+Ala-peptide	N	MS	Arg	Ile	Ala	Lys	Ala	Val	Asn	Glu	Vidmar et al., 2017
Alpha-enolase	P06733		peptide-Ser79+Lys-peptide	N	MS	Ala	Leu	Val	Ser	Lys	Lys	Leu	Asn	Vidmar et al., 2017
Alpha-enolase	P06733		peptide-Lys281+Ser-peptide	N	MS	Asp	Leu	Tyr	Lys	Ser	Phe	Ile	Lys	Vidmar et al., 2017
Alpha-enolase	P06733		peptide-Arg269+Tyr-peptide	N	MS	Asp	Pro	Ser	Arg	Tyr	Ile	Ser	Pro	Vidmar et al., 2017
Alpha-enolase	P06733		peptide-Gly418+Ser-peptide	N	MS	Glu	Glu	Leu	Gly	Ser	Lys	Ala	Lys	Vidmar et al., 2017
Alpha-enolase	P06733		peptide-Ser63+Lys-peptide	N	MS	Lys	Gly	Val	Ser	Lys	Ala	Val	Glu	Vidmar et al., 2017
Alpha-enolase	P06733		peptide-Arg9+Glu-peptide	N	MS	Ile	His	Ala	Arg	Glu	Ile	Phe	Asp	Vidmar et al., 2017
Alpha-enolase	P06733		peptide-Thr308+Ala-peptide	N	MS	Gln	Lys	Phe	Thr	Ala	Ser	Ala	Gly	Vidmar et al., 2017
Alpha-enolase	P06733		peptide-Phe31+Arg-peptide	N	MS	Lys	Gly	Leu	Phe	Arg	Ala	Ala	Val	Vidmar et al., 2017
Alpha-enolase	P06733		peptide-Leu341+Leu-peptide	N	MS	Asn	Cys	Leu	Leu	Leu	Lys	Val	Asn	Vidmar et al., 2017
Alpha-enolase	P06733		peptide-Lys228+Thr-peptide	N	MS	Glu	Leu	Leu	Lys	Thr	Ala	Ile	Gly	Vidmar et al., 2017
Alpha-enolase	P06733		peptide-Gly59+Lys-peptide	N	MS	Arg	Tyr	Met	Gly	Lys	Gly	Val	Ser	Vidmar et al., 2017
Alpha-enolase	P06733		peptide-Ala309+Ser-peptide	N	MS	Lys	Phe	Thr	Ala	Ser	Ala	Gly	Ile	Vidmar et al., 2017
Alpha-enolase	P06733		peptide-Glu125+Lys-peptide	N	MS	Gly	Ala	Val	Glu	Lys	Gly	Val	Pro	Vidmar et al., 2017
Alpha-enolase	P06733		peptide-Ala329+Lys-peptide	N	MS	Lys	Arg	Ile	Ala	Lys	Ala	Val	Asn	Vidmar et al., 2017
Alpha-enolase	P06733		peptide-Ser370+His-peptide	N	MS	Val	Met	Val	Ser	His	Arg	Ser	Gly	Vidmar et al., 2017
Alpha-enolase	P06733		peptide-Met368+Val-peptide	N	MS	Trp	Gly	Val	Met	Val	Ser	His	Arg	Vidmar et al., 2017
Alpha-enolase	P06733		peptide-Ala277+Asp-peptide	N	MS	Asp	Gln	Leu	Ala	Asp	Leu	Tyr	Lys	Vidmar et al., 2017
Alpha-enolase	P06733		peptide-Met94+Ile-peptide	N	MS	Asp	Lys	Leu	Met	Ile	Glu	Met	Asp	Vidmar et al., 2017
Alpha-enolase	P06733		peptide-Glu219+Asn-peptide	N	MS	Asn	Ile	Leu	Glu	Asn	Lys	Glu	Gly	Vidmar et al., 2017
Alpha-enolase	P06733		peptide-Glu67+His-peptide	N	MS	Lys	Ala	Val	Glu	His	Ile	Asn	Lys	Vidmar et al., 2017
Alpha-enolase	P06733		peptide-Arg183+Ile-peptide	N	MS	Glu	Ala	Met	Arg	Ile	Gly	Ala	Glu	Vidmar et al., 2017
Alpha-enolase	P06733		peptide-Gly185+Ala-peptide	N	MS	Met	Arg	Ile	Gly	Ala	Glu	Val	Tyr	Vidmar et al., 2017
Alpha-enolase	P06733		peptide-Arg50+Asp-peptide	N	MS	Leu	Glu	Leu	Arg	Asp	Asn	Asp	Lys	Vidmar et al., 2017
Alpha-enolase	P06733		peptide-Arg412+Ile-peptide	N	MS	Gln	Leu	Leu	Arg	Ile	Glu	Glu	Glu	Vidmar et al., 2017
Alpha-enolase	P06733		peptide-Thr85+Glu-peptide	N	MS	Leu	Asn	Val	Thr	Glu	Gln	Glu	Lys	Vidmar et al., 2017
Alpha-enolase	P06733		peptide-Arg132+His-peptide	N	MS	Pro	Leu	Tyr	Arg	His	Ile	Ala	Asp	Vidmar et al., 2017
Alpha-enolase	P06733		peptide-Ile271+Ser-peptide	N	MS	Ser	Arg	Tyr	Ile	Ser	Pro	Asp	Gln	Vidmar et al., 2017
Alpha-enolase	P06733		peptide-Tyr131+Arg-peptide	N	MS	Val	Pro	Leu	Tyr	Arg	His	Ile	Ala	Vidmar et al., 2017
Alpha-enolase	P06733		peptide-Gln314+Val-peptide	N	MS	Ala	Gly	Ile	Gln	Val	Val	Gly	Asp	Vidmar et al., 2017
Alpha-enolase	P06733		peptide-Arg400+Ser-peptide	N	MS	Ala	Pro	Cys	Arg	Ser	Glu	Arg	Leu	Vidmar et al., 2017
Alpha-enolase	P06733		peptide-Gly243+Met-peptide	N	MS	Val	Val	Ile	Gly	Met	Asp	Val	Ala	Vidmar et al., 2017
Aminoacyl tRNA synthase complex-interacting multifunctional protein 1	Q12904	138-154	Peptide-Ala142+Gly-Peptide	N	MS	Gln	Ser	Ile	Ala	Gly	Ser	Ala	Asp	Biniossek et al., 2011
Aminoacyl tRNA synthase complex-interacting multifunctional protein 1	Q12904	251-267	IIe-Thr-Phe-Asp254+Ala-Peptide	N	MS	Ile	Thr	Phe	Asp	Ala	Phe	Pro	Gly	Biniossek et al., 2011
Aminoacyl tRNA synthase complex-interacting multifunctional protein 1	Q12904		peptide-Cys229+Ala-peptide	N	MS	Met	Val	Met	Cys	Ala	Ser	Ser	Pro	Vidmar et al., 2017
Angio-associated migratory cell protein	Q13685	210-222	Thr-Phe-Gln212+Gly-Peptide	N	MS	-	Thr	Phe	Gln	Gly	Pro	Asn	Cys	Biniossek et al., 2011
Ankyrin repeat domain-containing protein 17	O75179	2399-2421	Peptide-Gly2410+Ser-Peptide	N	MS	Val	Pro	Leu	Gly	Ser	Glu	Lys	Pro	Biniossek et al., 2011
Annexin A1	P04083		peptide-Ser182+Leu-peptide	N	MS	Ala	Leu	Leu	Ser	Leu	Ala	Lys	Gly	Vidmar et al., 2017
Annexin A1	P04083		peptide-Glu208+Ala-peptide	N	MS	Ala	Leu	Tyr	Glu	Ala	Gly	Glu	Arg	Vidmar et al., 2017
Annexin A1	P04083		peptide-Tyr207+Glu-peptide	N	MS	Arg	Ala	Leu	Tyr	Glu	Ala	Gly	Glu	Vidmar et al., 2017
Annexin A1	P04083		peptide-Cys324+Gln-peptide	N	MS	Ile	Ser	Leu	Cys	Gln	Ala	Ile	Leu	Vidmar et al., 2017
Annexin A1	P04083		peptide-Ala142+Ser-peptide	N	MS	Glu	Ile	Leu	Ala	Ser	Arg	Thr	Asn	Vidmar et al., 2017
Annexin A1	P04083		peptide-Gly33+Ser-peptide	N	MS	Gly	Gly	Pro	Gly	Ser	Ala	Val	Ser	Vidmar et al., 2017
Annexin A1	P04083		peptide-Lys58+Gly-peptide	N	MS	Ile	Met	Val	Lys	Gly	Val	Asp	Glu	Vidmar et al., 2017
Annexin A1	P04083		peptide-Ala184+Lys-peptide	N	MS	Leu	Ser	Leu	Ala	Lys	Gly	Asp	Arg	Vidmar et al., 2017
Annexin A1	P04083		peptide-Glu255+Leu-peptide	N	MS	Leu	Asp	Leu	Glu	Leu	Lys	Gly	Asp	Vidmar et al., 2017
Annexin A1	P04083		peptide-Lys97+Lys-peptide	N	MS	Glu	Thr	Leu	Lys	Lys	Ala	Leu	Thr	Vidmar et al., 2017
Annexin A1	P04083		peptide-Leu181+Ser-peptide	N	MS	Asn	Ala	Leu	Leu	Ser	Leu	Ala	Lys	Vidmar et al., 2017
Annexin A1	P04083		peptide-Met300+Val-peptide	N	MS	Ile	Arg	Ile	Met	Val	Ser	Arg	Ser	Vidmar et al., 2017
Annexin A1	P04083		peptide-Lys161+Arg-peptide	N	MS	Glu	Glu	Leu	Lys	Arg	Asp	Leu	Ala	Vidmar et al., 2017
Annexin A1	P04083		peptide-Gly131+Thr-peptide	N	MS	Lys	Gly	Leu	Gly	Thr	Asp	Glu	Asp	Vidmar et al., 2017
Annexin A1	P04083		peptide-Lys287+Gly-peptide	N	MS	Gln	Ala	Met	Lys	Gly	Val	Gly	Thr	Vidmar et al., 2017
Annexin A1	P04083		peptide-Lys26+Ser-peptide	N	MS	Gln	Thr	Val	Lys	Ser	Ser	Lys	Gly	Vidmar et al., 2017
Annexin A1	P04083		peptide-Arg157+Glu-peptide	N	MS	Arg	Val	Tyr	Arg	Glu	Glu	Leu	Lys	Vidmar et al., 2017
Annexin A1	P04083		peptide-Leu112+Lys-peptide	N	MS	Leu	Ala	Leu	Leu	Lys	Thr	Pro	Ala	Vidmar et al., 2017
Annexin A1	P04083		peptide-Thr101+Gly-peptide	N	MS	Lys	Ala	Leu	Thr	Gly	His	Leu	Glu	Vidmar et al., 2017
Annexin A1	P04083		peptide-Gln86+Glu-peptide	N	MS	Ala	Tyr	Leu	Gln	Glu	Thr	Gly	Lys	Vidmar et al., 2017
Annexin A1	P04083		peptide-Thr226+Thr-peptide	N	MS	Thr	Ile	Leu	Thr	Thr	Arg	Ser	Tyr	Vidmar et al., 2017
Annexin A1	P04083		peptide-Lys113+Thr-peptide	N	MS	Ala	Leu	Leu	Lys	Thr	Pro	Ala	Gln	Vidmar et al., 2017
Annexin A2	P07355		peptide-Lys88+Ser-peptide	N	MS	Ser	Ala	Leu	Lys	Ser	Ala	Leu	Ser	Vidmar et al., 2017
Annexin A2	P07355		peptide-Glu130+Ile-peptide	N	MS	Ser	Leu	Ile	Glu	Ile	Ile	Cys	Ser	Vidmar et al., 2017
Annexin A2	P07355		peptide-Tyr151+Lys-peptide	N	MS	Lys	Glu	Met	Tyr	Lys	Thr	Asp	Leu	Vidmar et al., 2017
Annexin A2	P07355		peptide-Gly207+Thr-peptide	N	MS	Lys	Arg	Lys	Gly	Thr	Asp	Val	Pro	Vidmar et al., 2017
Annexin A2	P07355		peptide-Ser92+Gly-peptide	N	MS	Ser	Ala	Leu	Ser	Gly	His	Leu	Glu	Vidmar et al., 2017
Annexin A2	P07355		peptide-Lys148+Glu-peptide	N	MS	Arg	Val	Tyr	Lys	Glu	Met	Tyr	Lys	Vidmar et al., 2017
Annexin A2	P07355		peptide-Glu43+Thr-peptide	N	MS	Leu	Asn	Ile	Glu	Thr	Ala	Ile	Lys	Vidmar et al., 2017
Annexin A2	P07355		peptide-Gly122+Thr-peptide	N	MS	Lys	Gly	Leu	Gly	Thr	Asp	Glu	Asp	Vidmar et al., 2017
Annexin A2	P07355		peptide-Lys204+Arg-peptide	N	MS	Ala	Gly	Val	Lys	Arg	Lys	Gly	Thr	Vidmar et al., 2017
Annexin A2	P07355		peptide-Thr31+Asn-peptide	N	MS	Lys	Ala	Tyr	Thr	Asn	Phe	Asp	Ala	Vidmar et al., 2017
Annexin A2	P07355		peptide-Tyr147+Lys-peptide	N	MS	Asn	Arg	Val	Tyr	Lys	Glu	Met	Tyr	Vidmar et al., 2017
Annexin A2	P07355		peptide-Gln264+Asn-peptide	N	MS	Gln	Cys	Ile	Gln	Asn	Lys	Pro	Leu	Vidmar et al., 2017
Annexin A2	P07355		peptide-Ser12+Leu-peptide	N	MS	Cys	Lys	Leu	Ser	Leu	Glu	Gly	Asp	Vidmar et al., 2017
Annexin A2	P07355		peptide-Lys152+Thr-peptide	N	MS	Glu	Met	Tyr	Lys	Thr	Asp	Leu	Glu	Vidmar et al., 2017
Annexin A2	P07355		peptide-Gln261+Cys-peptide	N	MS	Asn	Leu	Val	Gln	Cys	Ile	Gln	Asn	Vidmar et al., 2017
Annexin A2	P07355		peptide-Glu242+Ser-peptide	N	MS	Asp	Met	Leu	Glu	Ser	Ile	Arg	Lys	Vidmar et al., 2017
Annexin A2	P07355		peptide-Leu103+Lys-peptide	N	MS	Leu	Gly	Leu	Leu	Lys	Thr	Pro	Ala	Vidmar et al., 2017
Annexin A2	P07355		peptide-Lys28+Ala-peptide	N	MS	Gly	Ser	Val	Lys	Ala	Tyr	Thr	Asn	Vidmar et al., 2017
Annexin A2	P07355		peptide-Lys10+Leu-peptide	N	MS	Ile	Leu	Cys	Lys	Leu	Ser	Leu	Glu	Vidmar et al., 2017
Annexin A2	P07355		peptide-Ala173+Leu-peptide	N	MS	Leu	Met	Val	Ala	Leu	Ala	Lys	Gly	Vidmar et al., 2017
Annexin A2	P07355		peptide-Thr218+Glu-peptide	N	MS	Ser	Ile	Met	Thr	Glu	Arg	Ser	Val	Vidmar et al., 2017
Annexin A2	P07355		peptide-Lys104+Thr-peptide	N	MS	Gly	Leu	Leu	Lys	Thr	Pro	Ala	Gln	Vidmar et al., 2017
Annexin A3	P12429		peptide-Lys263+Gly-peptide	N	MS	Arg	Ala	Leu	Lys	Gly	Ile	Gly	Thr	Vidmar et al., 2017
Annexin A3	P12429		peptide-Tyr183+Lys-peptide	N	MS	Gln	Ile	Leu	Tyr	Lys	Ala	Gly	Glu	Vidmar et al., 2017
Annexin A3	P12429		peptide-Gly141+Asp-peptide	N	MS	Lys	Ser	Leu	Gly	Asp	Asp	Ile	Ser	Vidmar et al., 2017
Annexin A3	P12429		peptide-Lys184+Ala-peptide	N	MS	Ile	Leu	Tyr	Lys	Ala	Gly	Glu	Asn	Vidmar et al., 2017
Annexin A3	P12429		peptide-Lys137+Lys-peptide	N	MS	Thr	Val	Tyr	Lys	Lys	Ser	Leu	Gly	Vidmar et al., 2017
Annexin A5	P08758		peptide-Tyr91+Asp-peptide	N	MS	Ser	Arg	Leu	Tyr	Asp	Ala	Tyr	Glu	Vidmar et al., 2017
Annexin A5	P08758		peptide-Thr10+Asp-peptide	N	MS	Gly	Thr	Val	Thr	Asp	Phe	Pro	Gly	Vidmar et al., 2017
Annexin A5	P08758		peptide-Arg50+Gln-peptide	N	MS	Asn	Ala	Gln	Arg	Gln	Glu	Ile	Ser	Vidmar et al., 2017
Annexin A5	P08758		peptide-Leu156+Leu-peptide	N	MS	Leu	Val	Val	Leu	Leu	Gln	Ala	Asn	Vidmar et al., 2017
Annexin A5	P08758		peptide-Lys58+Thr-peptide	N	MS	Ala	Ala	Phe	Lys	Thr	Leu	Phe	Gly	Vidmar et al., 2017
Annexin A5	P08758		peptide-Gly143+Asp-peptide	N	MS	Asp	Val	Val	Gly	Asp	Thr	Ser	Gly	Vidmar et al., 2017
Annexin A5	P08758		peptide-Glu52+Ile-peptide	N	MS	Gln	Arg	Gln	Glu	Ile	Ser	Ala	Ala	Vidmar et al., 2017
Annexin A5	P08758		peptide-Ala115+Ser-peptide	N	MS	Glu	Ile	Ile	Ala	Ser	Arg	Thr	Pro	Vidmar et al., 2017
Annexin A5	P08758		peptide-Phe61+Gly-peptide	N	MS	Lys	Thr	Leu	Phe	Gly	Arg	Asp	Leu	Vidmar et al., 2017
Annexin A5	P08758		peptide-Lys101+Gly-peptide	N	MS	His	Ala	Leu	Lys	Gly	Ala	Gly	Thr	Vidmar et al., 2017
Annexin A5	P08758		peptide-Lys186+Trp-peptide	N	MS	Gly	Glu	Leu	Lys	Trp	Gly	Thr	Asp	Vidmar et al., 2017
Annexin A5	P08758		peptide-Gln158+Ala-peptide	N	MS	Val	Leu	Leu	Gln	Ala	Asn	Arg	Asp	Vidmar et al., 2017
Annexin A5	P08758		peptide-Leu157+Gln-peptide	N	MS	Val	Val	Leu	Leu	Gln	Ala	Asn	Arg	Vidmar et al., 2017
Annexin A6	P08133	648-663	Ser-Leu-His650+Gln-Peptide	N	MS	-	Ser	Leu	His	Gln	Ala	Ile	Glu	Biniossek et al., 2011
Annexin A6	P08133	484-498	Peptide-Ser490+Ser-Peptide	N	MS	Asp	Ala	Leu	Ser	Ser	Asp	Thr	Ser	Biniossek et al., 2011
Annexin A6	P08133	141-156	Peptide-Gly148+Asp-Peptide	N	MS	Asp	Ile	Ile	Gly	Asp	Thr	Ser	Gly	Biniossek et al., 2011
Anterior gradient protein 2 homolog	O95994		peptide-Tyr111+Glu-peptide	N	MS	Asn	Leu	Val	Tyr	Glu	Thr	Thr	Asp	Vidmar et al., 2017
Anterior gradient protein 2 homolog	O95994		peptide-Met129+Phe-peptide	N	MS	Pro	Arg	Ile	Met	Phe	Val	Asp	Pro	Vidmar et al., 2017
antileukoproteinase	P03973	26-132	peptide-Thr92+Tyr-peptide	P		Cys	Pro	Val	Thr	Tyr	Gly	Gln	Cys	Taggart et al., 2001	26837
AP-3 complex subunit beta-1	O00203	1026-1044	Peptide-Gly1033+Ala-Peptide	N	MS	Ala	Asn	Val	Gly	Ala	Val	Pro	Ser	Biniossek et al., 2011
Apoptosis inhibitor 5	Q9BZZ5	10-25	Peptide-Ala15+Asp-Peptide	N	MS	Gly	Ile	Leu	Ala	Asp	Ala	Thr	Glu	Biniossek et al., 2011
Arfaptin-1	P53367		peptide-Thr16+Ser-peptide	N	MS	Ile	Pro	Val	Thr	Ser	Asn	Gly	Glu	Vidmar et al., 2017
Aspartate aminotransferase, mitochondrial	P00505	186-200	Peptide-Asp190+Phe-Peptide	N	MS	Cys	Gly	Phe	Asp	Phe	Thr	Gly	Ala	Biniossek et al., 2011
Aspartate aminotransferase, mitochondrial	P00505		peptide-Thr192+Gly-peptide	N	MS	Phe	Asp	Phe	Thr	Gly	Ala	Val	Glu	Vidmar et al., 2017
Aspartate aminotransferase, mitochondrial	P00505		peptide-Gly65+Ala-peptide	N	MS	Leu	Gly	Val	Gly	Ala	Tyr	Arg	Asp	Vidmar et al., 2017
Aspartate--tRNA ligase, cytoplasmic	P14868	127-141	Peptide-Thr131+Gln-Peptide	N	MS	Gly	Ser	Cys	Thr	Gln	Gln	Asp	Val	Biniossek et al., 2011
Aspartyl/asparaginyl beta-hydroxylase	Q12797		peptide-Glu137+Ala-peptide	N	MS	Val	Pro	Val	Glu	Ala	Glu	Pro	Gln	Vidmar et al., 2017
Ataxin-10	Q9UBB4		peptide-Met15+Val-peptide	N	MS	Ser	Gly	Val	Met	Val	Pro	Ala	Pro	Vidmar et al., 2017
Ataxin-2-like protein	Q8WWM7	824-905	Peptide-Gln895+His-Peptide	N	MS	Ser	Pro	Val	Gln	His	Gln	Ala	Gly	Biniossek et al., 2011
ATP synthase subunit alpha, mitochondrial	P25705		peptide-Gly78+Asp-peptide	N	MS	Leu	Ser	Ile	Gly	Asp	Gly	Ile	Ala	Vidmar et al., 2017
ATP synthase subunit alpha, mitochondrial	P25705		peptide-Gly61+Ala-peptide	N	MS	Arg	Ile	Leu	Gly	Ala	Asp	Thr	Ser	Vidmar et al., 2017
ATP synthase subunit alpha, mitochondrial	P25705		peptide-Gly155+Asn-peptide	N	MS	Asp	Ala	Leu	Gly	Asn	Ala	Ile	Asp	Vidmar et al., 2017
ATP synthase subunit alpha, mitochondrial	P25705		peptide-Lys175+Ala-peptide	N	MS	Val	Gly	Leu	Lys	Ala	Pro	Gly	Ile	Vidmar et al., 2017
ATP synthase subunit beta, mitochondrial	P06576	407-422	Peptide-Gly414+Ser-Peptide	N	MS	Asn	Ile	Val	Gly	Ser	Glu	His	Tyr	Biniossek et al., 2011
ATP synthase subunit beta, mitochondrial	P06576		peptide-Thr453+Val-peptide	N	MS	Asp	Lys	Leu	Thr	Val	Ser	Arg	Ala	Vidmar et al., 2017
ATP synthase subunit beta, mitochondrial	P06576		peptide-Ala496+Gly-peptide	N	MS	Gln	Ile	Leu	Ala	Gly	Glu	Tyr	Asp	Vidmar et al., 2017
ATP synthase subunit beta, mitochondrial	P06576		peptide-Gly442+Met-peptide	N	MS	Ala	Ile	Leu	Gly	Met	Asp	Glu	Leu	Vidmar et al., 2017
ATP synthase subunit beta, mitochondrial	P06576		peptide-Asp402+Ser-peptide	N	MS	Asp	Pro	Leu	Asp	Ser	Thr	Ser	Arg	Vidmar et al., 2017
ATP synthase subunit beta, mitochondrial	P06576		peptide-Asp127+Ser-peptide	N	MS	Lys	Val	Leu	Asp	Ser	Gly	Ala	Pro	Vidmar et al., 2017
ATP synthase subunit beta, mitochondrial	P06576		peptide-Leu302+Leu-peptide	N	MS	Gln	Asp	Val	Leu	Leu	Phe	Ile	Asp	Vidmar et al., 2017
ATP synthase subunit beta, mitochondrial	P06576		peptide-Leu126+Asp-peptide	N	MS	Gln	Lys	Val	Leu	Asp	Ser	Gly	Ala	Vidmar et al., 2017
ATP synthase subunit beta, mitochondrial	P06576		peptide-Glu514+Glu-peptide	N	MS	Gly	Pro	Ile	Glu	Glu	Ala	Val	Ala	Vidmar et al., 2017
ATP synthase subunit O, mitochondrial	P48047		peptide-Lys90+Ser-peptide	N	MS	Ile	Lys	Val	Lys	Ser	Leu	Asn	Asp	Vidmar et al., 2017
ATP-citrate synthase	P53396	423-452	Peptide-Asn440+Ala-Peptide	N	MS	Phe	Leu	Leu	Asn	Ala	Ser	Gly	Ser	Biniossek et al., 2011
ATP-citrate synthase	P53396	885-915	Peptide-Ser905+Gly-Peptide	N	MS	Pro	Ala	Val	Ser	Gly	Ala	His	Asn	Biniossek et al., 2011
ATP-citrate synthase	P53396	617-635	Peptide-Gly627+Gly-Peptide	N	MS	Ala	Thr	Val	Gly	Gly	Ile	Lys	Pro	Biniossek et al., 2011
ATP-citrate synthase	P53396	739-775	Peptide-Gly759+His-Peptide	N	MS	Val	Gln	Phe	Gly	His	Ala	Gly	Ala	Biniossek et al., 2011
ATP-citrate synthase	P53396	677-697	Peptide-Ala686+IIe-Peptide	N	MS	Glu	Gly	Val	Ala	Ile	Gly	Gly	Asp	Biniossek et al., 2011
ATP-citrate synthase	P53396	43-64	Peptide-Ser52+Gln-Peptide	N	MS	Trp	Leu	Leu	Ser	Gln	Asn	Leu	Val	Biniossek et al., 2011
ATP-citrate synthase	P53396		peptide-Lys30+Tyr-peptide	N	MS	Asn	Arg	Phe	Lys	Tyr	Ala	Arg	Val	Vidmar et al., 2017
ATP-citrate synthase	P53396		peptide-Lys780+Glu-peptide	N	MS	Gln	Ala	Leu	Lys	Glu	Ala	Gly	Val	Vidmar et al., 2017
ATP-citrate synthase	P53396		peptide-Arg33+Val-peptide	N	MS	Lys	Tyr	Ala	Arg	Val	Thr	Pro	Asp	Vidmar et al., 2017
ATP-dependent 6-phosphofructokinase, platelet type	Q01813		peptide-Ser540+Asn-peptide	N	MS	Ala	Thr	Val	Ser	Asn	Asn	Val	Pro	Vidmar et al., 2017
ATP-dependent Clp protease proteolytic subunit, mitochondrial	Q16740		peptide-Glu234+Ala-peptide	N	MS	Ser	Pro	Met	Glu	Ala	Gln	Glu	Phe	Vidmar et al., 2017
ATP-dependent Clp protease proteolytic subunit, mitochondrial	Q16740		peptide-Leu245+Val-peptide	N	MS	Asp	Lys	Val	Leu	Val	His	Pro	Pro	Vidmar et al., 2017
ATP-dependent RNA helicase A	Q08211	820-837	Peptide-Asp827+Ala-Peptide	N	MS	Pro	Pro	Leu	Asp	Ala	Val	Ile	Glu	Biniossek et al., 2011
ATP-dependent RNA helicase A	Q08211		peptide-His687+Ser-peptide	N	MS	Leu	Pro	Leu	His	Ser	Gln	Ile	Pro	Vidmar et al., 2017
ATP-dependent RNA helicase A	Q08211		peptide-Ala316+Gln-peptide	N	MS	Gly	Lys	Leu	Ala	Gln	Phe	Glu	Pro	Vidmar et al., 2017
ATP-dependent RNA helicase A	Q08211		peptide-Gly133+Val-peptide	N	MS	Ser	Gly	Tyr	Gly	Val	Pro	Gly	Pro	Vidmar et al., 2017
ATP-dependent RNA helicase DDX1	Q92499	133-146	Peptide-Ser138+Cys-Peptide	N	MS	Tyr	Glu	Val	Ser	Cys	His	Asp	Gln	Biniossek et al., 2011
ATP-dependent RNA helicase DDX39A	O00148	2-32	Peptide-Glu24+Ser-Peptide	N	MS	Ala	Pro	Gln	Glu	Ser	Thr	Pro	Ala	Biniossek et al., 2011
ATP-dependent RNA helicase DDX39A	O00148		peptide-Ala411+Glu-peptide	N	MS	Val	Asn	Val	Ala	Glu	Leu	Pro	Glu	Vidmar et al., 2017
ATPase ASNA1	O43681		peptide-Arg326+Gly-peptide	N	MS	His	Glu	Val	Arg	Gly	Ala	Asp	Lys	Vidmar et al., 2017
B-cell receptor-associated protein 31	P51572		peptide-Gln234+Ala-peptide	N	MS	Ala	Lys	Leu	Gln	Ala	Ala	Val	Asp	Vidmar et al., 2017
BAG family molecular chaperone regulator 2	O95816		peptide-Lys111+His-peptide	N	MS	Glu	Ser	Leu	Lys	His	Ala	Thr	Arg	Vidmar et al., 2017
Band 4.1-like protein 2	O43491	903-943	Peptide-Ser934+Thr-Peptide	N	MS	Glu	Ser	Val	Ser	Thr	Thr	Thr	Thr	Biniossek et al., 2011
Basic leucine zipper and W2 domain-containing protein 1	Q7L1Q6		peptide-Lys17+Thr-peptide	N	MS	Gln	Arg	Phe	Lys	Thr	Arg	Lys	Arg	Vidmar et al., 2017
Basigin	P35613		peptide-Lys227+Ser-peptide	N	MS	Lys	Ala	Val	Lys	Ser	Ser	Glu	His	Vidmar et al., 2017
BH3-interacting domain death agonist (BID)	P70444	1-195	peptide-Arg65+Ser-peptide	P		Gln	Ala	Ser	Arg	Ser	Phe	Asn	Gln	Cirman et al., 2004	19233
BH3-interacting domain death agonist (BID)	P70444	1-195	peptide-Gly12+Ala-peptide	P		Ser	Gly	Leu	Gly	Ala	Glu	His	Ile	Cirman et al., 2004	19238
BH3-interacting domain death agonist (BID)	P70444	1-195	peptide-Tyr47+Trp-peptide	P		Val	Gln	Ala	Tyr	Trp	Glu	Ala	Asp	Cirman et al., 2004	19239
BH3-interacting domain death agonist (BID)	P70444	1-195	peptide-Gln57+Thr-peptide	P		Asp	Glu	Leu	Gln	Thr	Asp	Gly	Ser	Cirman et al., 2004	19240
Bifunctional glutamate/proline--tRNA ligase	P07814		peptide-Gly1449+Glu-peptide	N	MS	Pro	Phe	Cys	Gly	Glu	Ile	Asp	Cys	Vidmar et al., 2017
Bifunctional glutamate/proline--tRNA ligase	P07814		peptide-Cys1448+Gly-peptide	N	MS	Ile	Pro	Phe	Cys	Gly	Glu	Ile	Asp	Vidmar et al., 2017
Bifunctional glutamate/proline--tRNA ligase	P07814		peptide-Cys1487+Glu-peptide	N	MS	Lys	Pro	Leu	Cys	Glu	Leu	Gln	Pro	Vidmar et al., 2017
Bifunctional glutamate/proline--tRNA ligase	P07814		peptide-Lys861+Ala-peptide	N	MS	Leu	Ser	Leu	Lys	Ala	Gln	Tyr	Lys	Vidmar et al., 2017
Bifunctional glutamate/proline--tRNA ligase	P07814		peptide-Ala1427+Asn-peptide	N	MS	Met	Val	Val	Ala	Asn	Thr	Met	Glu	Vidmar et al., 2017
Bifunctional glutamate/proline--tRNA ligase	P07814		peptide-Glu189+Leu-peptide	N	MS	Lys	Phe	Val	Glu	Leu	Pro	Gly	Ala	Vidmar et al., 2017
Bifunctional glutamate/proline--tRNA ligase	P07814		peptide-Lys512+Lys-peptide	N	MS	Ala	Leu	Leu	Lys	Lys	Glu	Val	Ile	Vidmar et al., 2017
Bifunctional glutamate/proline--tRNA ligase	P07814		peptide-Thr1391+Val-peptide	N	MS	Glu	Lys	Leu	Thr	Val	Ala	Glu	Asn	Vidmar et al., 2017
Bifunctional purine biosynthesis protein PURH	P31939	359-379	Peptide-Asp368+Gln-Peptide	N	MS	Leu	Gln	Met	Asp	Gln	Ser	Tyr	Lys	Biniossek et al., 2011
Bleomycin hydrolase	Q13867	363-391	Peptide-Ser380+Glu-Peptide	N	MS	Thr	Ala	Val	Ser	Glu	Lys	Asp	Asp	Biniossek et al., 2011
BolA-like protein 2	Q9H3K6	15-30	Asp-Leu-Glu17+Ala-Peptide	N	MS	-	Asp	Leu	Glu	Ala	Glu	His	Val	Biniossek et al., 2011
Brain acid soluble protein 1	P80723		peptide-Glu213+Ala-peptide	N	MS	Lys	Pro	Val	Glu	Ala	Pro	Ala	Ala	Vidmar et al., 2017
BRO1 domain-containing protein BROX	Q5VW32	59-83	Peptide-Gln69+Gly-Peptide	N	MS	Ser	Leu	Leu	Gln	Gly	Phe	Ile	Asn	Biniossek et al., 2011
Bromodomain-containing protein 4	O60885		peptide-Gln219+Ala-peptide	N	MS	Pro	Pro	Val	Gln	Ala	Thr	Pro	His	Vidmar et al., 2017
BTB/POZ domain-containing protein KCTD12	Q96CX2	63-74	Met-Phe-Thr65+Gln-Peptide	N	MS	-	Met	Phe	Thr	Gln	Gln	Gln	Pro	Biniossek et al., 2011
Bz-Phe-Val-Arg-NHMec			Bz-Phe-Val-Arg+NHMec	S		Bz	Phe	Val	Arg	AMC	-	-	-	Kirschke, 2004
C-1-tetrahydrofolate synthase, cytoplasmic	P11586	621-653	Peptide-Ala643+His-Peptide	N	MS	Ala	Asn	Ile	Ala	His	Gly	Asn	Ser	Biniossek et al., 2011
C-1-tetrahydrofolate synthase, cytoplasmic	P11586	621-653	Peptide-Ala640+Asn-Peptide	N	MS	Gly	Pro	Phe	Ala	Asn	Ile	Ala	His	Biniossek et al., 2011
C-1-tetrahydrofolate synthase, cytoplasmic	P11586	265-281	Ala-Ser-Phe267+Ile-Peptide	N	MS	-	Ala	Ser	Phe	Ile	Thr	Pro	Val	Biniossek et al., 2011
C-terminal-binding protein 2	P56545	53-71	Peptide-Cys60+Asp-Peptide	N	MS	Val	Ala	Phe	Cys	Asp	Ala	Gln	Ser	Biniossek et al., 2011
C-terminal-binding protein 2	P56545	387-434	Peptide-Ala421+His-Peptide	N	MS	Pro	Thr	Val	Ala	His	Pro	Ser	Gln	Biniossek et al., 2011
CAD protein	P27708	782-797	Peptide-Gly789+Phe-Peptide	N	MS	Asn	Cys	Val	Gly	Phe	Asp	His	Thr	Biniossek et al., 2011
CAD protein	P27708		peptide-Phe1644+Leu-peptide	N	MS	His	His	Leu	Phe	Leu	Ser	His	Asp	Vidmar et al., 2017
CAD protein	P27708		peptide-Ala523+Glu-peptide	N	MS	Ala	Arg	Met	Ala	Glu	Ile	Gly	Glu	Vidmar et al., 2017
Calcium homeostasis endoplasmic reticulum protein	Q8IWX8		peptide-Arg627+Arg-peptide	N	MS	Pro	His	Met	Arg	Arg	Gln	Gly	Pro	Vidmar et al., 2017
Calcium-binding mitochondrial carrier protein SCaMC-1	Q6NUK1		peptide-Gly459+Ile-peptide	N	MS	Pro	Ala	Val	Gly	Ile	Ser	Tyr	Val	Vidmar et al., 2017
Calcium-binding mitochondrial carrier protein SCaMC-1	Q6NUK1		peptide-Gln29+Ala-peptide	N	MS	Thr	Leu	Phe	Gln	Ala	Leu	Asp	Arg	Vidmar et al., 2017
Calcium-binding mitochondrial carrier protein SCaMC-1	Q6NUK1		peptide-Gly56+Gln-peptide	N	MS	Ile	Pro	Leu	Gly	Gln	Asp	Ala	Glu	Vidmar et al., 2017
Calmodulin	P62158	2-14	Peptide-Thr6+Glu-Peptide	N	MS	Asp	Gln	Leu	Thr	Glu	Glu	Gln	Ile	Biniossek et al., 2011
Calmodulin	P62158	15-31	Glu-Ala-Phe-Ser18+Leu-Peptide	N	MS	Glu	Ala	Phe	Ser	Leu	Phe	Asp	Lys	Biniossek et al., 2011
Calpain small subunit 1	P04632	10-60	Peptide-Ser34+Gly-Peptide	N	MS	Gly	Leu	Ile	Ser	Gly	Ala	Gly	Gly	Biniossek et al., 2011
Calpain small subunit 1	P04632	10-60	Peptide-IIe33+Ser-Peptide	N	MS	Gly	Gly	Leu	Ile	Ser	Gly	Ala	Gly	Biniossek et al., 2011
Calpain small subunit 1	P04632		peptide-Ser70+Glu-peptide	N	MS	Ser	Ala	Ile	Ser	Glu	Ala	Ala	Ala	Vidmar et al., 2017
Calpain small subunit 1	P04632		peptide-Gly160+Phe-peptide	N	MS	Gly	Lys	Leu	Gly	Phe	Glu	Glu	Phe	Vidmar et al., 2017
Calpain small subunit 1	P04632		peptide-Lys135+Thr-peptide	N	MS	Pro	Asp	Leu	Lys	Thr	Asp	Gly	Phe	Vidmar et al., 2017
Calpain small subunit 1	P04632		peptide-His86+Tyr-peptide	N	MS	Pro	Arg	Thr	His	Tyr	Ser	Asn	Ile	Vidmar et al., 2017
Calpain small subunit 1	P04632		peptide-Met151+Asp-peptide	N	MS	Val	Ala	Val	Met	Asp	Ser	Asp	Thr	Vidmar et al., 2017
Calpain-2 catalytic subunit	P17655	422-450	Peptide-Ser441+Gly-Peptide	N	MS	Glu	Glu	Leu	Ser	Gly	Gln	Thr	Asn	Biniossek et al., 2011
Calponin-3	Q15417		peptide-Ser13+Ala-peptide	N	MS	Tyr	Gly	Leu	Ser	Ala	Glu	Val	Lys	Vidmar et al., 2017
Calponin-3	Q15417		peptide-Ala21+Ser-peptide	N	MS	Asn	Lys	Ile	Ala	Ser	Lys	Tyr	Asp	Vidmar et al., 2017
Calponin-3	Q15417		peptide-Leu220+Ala-peptide	N	MS	Ala	Gly	Met	Leu	Ala	Pro	Gly	Thr	Vidmar et al., 2017
Calponin-3	Q15417		peptide-Gly264+Arg-peptide	N	MS	Tyr	Gly	Leu	Gly	Arg	Gln	Val	Tyr	Vidmar et al., 2017
Calreticulin	P27797		peptide-Gln67+Thr-peptide	N	MS	Lys	Gly	Leu	Gln	Thr	Ser	Gln	Asp	Vidmar et al., 2017
Calreticulin	P27797		peptide-Gln267+Asn-peptide	N	MS	Pro	Val	Ile	Gln	Asn	Pro	Glu	Tyr	Vidmar et al., 2017
Calreticulin	P27797		peptide-Thr173+Leu-peptide	N	MS	His	Leu	Tyr	Thr	Leu	Ile	Val	Arg	Vidmar et al., 2017
Calreticulin	P27797		peptide-Gln94+Phe-peptide	N	MS	Leu	Val	Val	Gln	Phe	Thr	Val	Lys	Vidmar et al., 2017
Calreticulin	P27797		peptide-Ser78+Ala-peptide	N	MS	Tyr	Ala	Leu	Ser	Ala	Ser	Phe	Glu	Vidmar et al., 2017
Calreticulin	P27797		peptide-Lys286+Gly-peptide	N	MS	Pro	Asp	Tyr	Lys	Gly	Thr	Trp	Ile	Vidmar et al., 2017
Calreticulin	P27797		peptide-Asp118+Gln-peptide	N	MS	Asn	Ser	Leu	Asp	Gln	Thr	Asp	Met	Vidmar et al., 2017
Calreticulin	P27797		peptide-Lys272+Gly-peptide	N	MS	Pro	Glu	Tyr	Lys	Gly	Glu	Trp	Lys	Vidmar et al., 2017
Calreticulin	P27797		peptide-Leu51+Ser-peptide	N	MS	Lys	Phe	Val	Leu	Ser	Ser	Gly	Lys	Vidmar et al., 2017
Calreticulin	P27797		peptide-Thr34+Ser-peptide	N	MS	Asp	Gly	Trp	Thr	Ser	Arg	Trp	Ile	Vidmar et al., 2017
Calreticulin	P27797		peptide-Lys98+His-peptide	N	MS	Phe	Thr	Val	Lys	His	Glu	Gln	Asn	Vidmar et al., 2017
Calumenin	O43852	174-189	Peptide-Leu180+His-Peptide	N	MS	Thr	Ala	Phe	Leu	His	Pro	Glu	Glu	Biniossek et al., 2011
Calumenin	O43852		peptide-Lys161+Met-peptide	N	MS	Arg	Arg	Phe	Lys	Met	Ala	Asp	Lys	Vidmar et al., 2017
Calumenin	O43852		peptide-Tyr275+Glu-peptide	N	MS	His	Leu	Val	Tyr	Glu	Ser	Asp	Gln	Vidmar et al., 2017
Calumenin	O43852		peptide-Ser35+Asp-peptide	N	MS	Pro	Gln	Leu	Ser	Asp	Lys	Val	His	Vidmar et al., 2017
Calumenin	O43852		peptide-Gly54+Ala-peptide	N	MS	Ala	Phe	Leu	Gly	Ala	Glu	Glu	Ala	Vidmar et al., 2017
Calumenin	O43852		peptide-Gly299+Ser-peptide	N	MS	Leu	Phe	Val	Gly	Ser	Gln	Ala	Thr	Vidmar et al., 2017
cAMP-regulated phosphoprotein 19	P56211	36-50	Peptide-Gly40+Gln-Peptide	N	MS	Pro	His	Leu	Gly	Gln	Lys	Pro	Gly	Biniossek et al., 2011
Carbonic anhydrase 2	P00918	59-76	Peptide-Asn61+Asn-Peptide	N	MS	-	Ile	Leu	Asn	Asn	Gly	His	Ala	Biniossek et al., 2011
Carbonic anhydrase 2	P00918	90-111	Peptide-Gly98+Ser-Peptide	N	MS	Phe	His	Trp	Gly	Ser	Leu	Asp	Gly	Biniossek et al., 2011
Carbonyl reductase [NADPH] 1	P16152		peptide-Ala255+Leu-peptide	N	MS	Val	Tyr	Leu	Ala	Leu	Leu	Pro	Pro	Vidmar et al., 2017
Carbonyl reductase [NADPH] 1	P16152		peptide-Thr241+Lys-peptide	N	MS	Pro	Lys	Ala	Thr	Lys	Ser	Pro	Glu	Vidmar et al., 2017
Carbonyl reductase [NADPH] 1	P16152		peptide-Asn224+Ala-peptide	N	MS	Ile	Leu	Leu	Asn	Ala	Cys	Cys	Pro	Vidmar et al., 2017
Carboxymethylenebutenolidase homolog	Q96DG6	126-142	Peptide-Gly134+Gly-Peptide	N	MS	Phe	Cys	Trp	Gly	Gly	Thr	Ala	Val	Biniossek et al., 2011
Carboxypeptidase D	O75976		peptide-Gly104+Ser-peptide	N	MS	Ala	Gly	Leu	Gly	Ser	Leu	Ile	Pro	Vidmar et al., 2017
Cathepsin B	P07858		peptide-Ala297+Asn-peptide	N	MS	Trp	Leu	Val	Ala	Asn	Ser	Trp	Asn	Vidmar et al., 2017
Cathepsin D	P07339		peptide-Tyr232+Leu-peptide	N	MS	Phe	Ser	Phe	Tyr	Leu	Ser	Arg	Asp	Vidmar et al., 2017
Cathepsin D	P07339		peptide-Gly180+Glu-peptide	N	MS	Gln	Val	Phe	Gly	Glu	Ala	Thr	Lys	Vidmar et al., 2017
Cathepsin D	P07339		peptide-Tyr394+Thr-peptide	N	MS	Gly	Arg	Tyr	Tyr	Thr	Val	Phe	Asp	Vidmar et al., 2017
Cathepsin D	P07339		peptide-Leu233+Ser-peptide	N	MS	Ser	Phe	Tyr	Leu	Ser	Arg	Asp	Pro	Vidmar et al., 2017
Cathepsin D	P07339		peptide-Gln220+Gln-peptide	N	MS	Asn	Leu	Met	Gln	Gln	Lys	Leu	Val	Vidmar et al., 2017
Cathepsin D	P07339		peptide-Ser234+Arg-peptide	N	MS	Phe	Tyr	Leu	Ser	Arg	Asp	Pro	Asp	Vidmar et al., 2017
Cathepsin D	P07339		peptide-Met301+Val-peptide	N	MS	Thr	Ser	Leu	Met	Val	Gly	Pro	Val	Vidmar et al., 2017
Cathepsin K	P43235		peptide-Lys295+Asn-peptide	N	MS	Trp	Ile	Ile	Lys	Asn	Ser	Trp	Gly	Vidmar et al., 2017
Cathepsin L1	P07711		peptide-Val226+Asp-peptide	N	MS	Thr	Gly	Phe	Val	Asp	Ile	Pro	Lys	Vidmar et al., 2017
Cathepsin L1	P07711		peptide-Ser246+Val-peptide	N	MS	Gly	Pro	Ile	Ser	Val	Ala	Ile	Asp	Vidmar et al., 2017
Cathepsin L1	P07711		peptide-Ser270+Ser-peptide	N	MS	Pro	Asp	Cys	Ser	Ser	Glu	Asp	Met	Vidmar et al., 2017
Cathepsin L1	P07711		peptide-Glu148+Gly-peptide	N	MS	Gly	Ala	Leu	Glu	Gly	Gln	Met	Phe	Vidmar et al., 2017
Cathepsin L1	P07711		peptide-Ala248+Ile-peptide	N	MS	Ile	Ser	Val	Ala	Ile	Asp	Ala	Gly	Vidmar et al., 2017
Cathepsin L1	P07711		peptide-Arg116+Ser-peptide	N	MS	Glu	Ala	Pro	Arg	Ser	Val	Asp	Trp	Vidmar et al., 2017
Cathepsin L1	P07711		peptide-Lys212+Tyr-peptide	N	MS	Glu	Ser	Cys	Lys	Tyr	Asn	Pro	Lys	Vidmar et al., 2017
Cathepsin L1	P07711		peptide-Phe111+Tyr-peptide	N	MS	Glu	Pro	Leu	Phe	Tyr	Glu	Ala	Pro	Vidmar et al., 2017
Cathepsin L1	P07711		peptide-Ser142+Ala-peptide	N	MS	Trp	Ala	Phe	Ser	Ala	Thr	Gly	Ala	Vidmar et al., 2017
Cathepsin L1	P07711		peptide-Glu286+Ser-peptide	N	MS	Tyr	Gly	Phe	Glu	Ser	Thr	Glu	Ser	Vidmar et al., 2017
Cathepsin S	P25774		peptide-Gly305+Glu-peptide	N	MS	His	Asn	Phe	Gly	Glu	Glu	Gly	Tyr	Vidmar et al., 2017
Cathepsin S	P25774		peptide-Ser143+Ala-peptide	N	MS	Trp	Ala	Phe	Ser	Ala	Val	Gly	Ala	Vidmar et al., 2017
Cathepsin S	P25774		peptide-Ser109+Asn-peptide	N	MS	Thr	Tyr	Lys	Ser	Asn	Pro	Asn	Arg	Vidmar et al., 2017
Cathepsin S	P25774		peptide-Gly251+Val-peptide	N	MS	Val	Ser	Val	Gly	Val	Asp	Ala	Arg	Vidmar et al., 2017
Cathepsin S	P25774		peptide-Thr186+Thr-peptide	N	MS	Gly	Phe	Met	Thr	Thr	Ala	Phe	Gln	Vidmar et al., 2017
Cathepsin S	P25774		peptide-Gln190+Tyr-peptide	N	MS	Thr	Ala	Phe	Gln	Tyr	Ile	Ile	Asp	Vidmar et al., 2017
Cathepsin S	P25774		peptide-Lys108+Ser-peptide	N	MS	Ile	Thr	Tyr	Lys	Ser	Asn	Pro	Asn	Vidmar et al., 2017
Cathepsin S	P25774		peptide-Gly284+Tyr-peptide	N	MS	Leu	Val	Val	Gly	Tyr	Gly	Asp	Leu	Vidmar et al., 2017
Cathepsin S	P25774		peptide-Lys239+Glu-peptide	N	MS	Asp	Val	Leu	Lys	Glu	Ala	Val	Ala	Vidmar et al., 2017
Cathepsin S	P25774		peptide-Thr273+Gln-peptide	N	MS	Pro	Ser	Cys	Thr	Gln	Asn	Val	Asn	Vidmar et al., 2017
Cathepsin S	P25774		peptide-Val283+Gly-peptide	N	MS	Val	Leu	Val	Val	Gly	Tyr	Gly	Asp	Vidmar et al., 2017
Cathepsin S	P25774		peptide-Lys153+Leu-peptide	N	MS	Ala	Gln	Leu	Lys	Leu	Lys	Thr	Gly	Vidmar et al., 2017
Cathepsin S	P25774		peptide-Ser249+Val-peptide	N	MS	Gly	Pro	Val	Ser	Val	Gly	Val	Asp	Vidmar et al., 2017
Cathepsin S	P25774		peptide-Arg113+Ile-peptide	N	MS	Asn	Pro	Asn	Arg	Ile	Leu	Pro	Asp	Vidmar et al., 2017
Cathepsin S	P25774		peptide-Asp253+Ala-peptide	N	MS	Val	Gly	Val	Asp	Ala	Arg	His	Pro	Vidmar et al., 2017
Cathepsin S	P25774		peptide-Val282+Val-peptide	N	MS	Gly	Val	Leu	Val	Val	Gly	Tyr	Gly	Vidmar et al., 2017
Cathepsin S	P25774		peptide-Lys297+Asn-peptide	N	MS	Trp	Leu	Val	Lys	Asn	Ser	Trp	Gly	Vidmar et al., 2017
Cathepsin S	P25774		peptide-Met185+Thr-peptide	N	MS	Gly	Gly	Phe	Met	Thr	Thr	Ala	Phe	Vidmar et al., 2017
Cathepsin S	P25774		peptide-Gly286+Asp-peptide	N	MS	Val	Gly	Tyr	Gly	Asp	Leu	Asn	Gly	Vidmar et al., 2017
Cathepsin S	P25774		peptide-Thr228+Glu-peptide	N	MS	Ser	Lys	Tyr	Thr	Glu	Leu	Pro	Tyr	Vidmar et al., 2017
Cathepsin S	P25774		peptide-Gly301+His-peptide	N	MS	Asn	Ser	Trp	Gly	His	Asn	Phe	Gly	Vidmar et al., 2017
Cathepsin S	P25774		peptide-Glu229+Leu-peptide	N	MS	Lys	Tyr	Thr	Glu	Leu	Pro	Tyr	Gly	Vidmar et al., 2017
Cathepsin S	P25774		peptide-Cys224+Ser-peptide	N	MS	Ala	Ala	Thr	Cys	Ser	Lys	Tyr	Thr	Vidmar et al., 2017
cathepsin S precursor	P25774	17-331	peptide-Met89+Ser-peptide	P		Glu	Glu	Val	Met	Ser	Leu	Met	Ser	Quraishi & Storer, 2001	19403
cathepsin S precursor	P25774	17-331	peptide-Ser93+Ser-peptide	P		Ser	Leu	Met	Ser	Ser	Leu	Arg	Val	Quraishi & Storer, 2001	19404
Cation-independent mannose-6-phosphate receptor	P11717	492-512	Peptide-Glu500+Ala-Peptide	N	MS	Gln	Asn	Trp	Glu	Ala	Val	Asp	Gly	Biniossek et al., 2011
Caveolae-associated protein 1	Q6NZI2		peptide-Lys173+Glu-peptide	N	MS	Lys	Ser	Leu	Lys	Glu	Ser	Glu	Ala	Vidmar et al., 2017
Caveolae-associated protein 1	Q6NZI2		peptide-Gly97+Lys-peptide	N	MS	Ser	Lys	Leu	Gly	Lys	Ala	His	Ala	Vidmar et al., 2017
Caveolae-associated protein 1	Q6NZI2		peptide-Gln87+Ser-peptide	N	MS	Gly	Ala	Val	Gln	Ser	Ile	Gln	Gly	Vidmar et al., 2017
Caveolae-associated protein 1	Q6NZI2		peptide-Gly278+Thr-peptide	N	MS	Asn	Lys	Leu	Gly	Thr	Arg	Leu	Val	Vidmar et al., 2017
Caveolae-associated protein 1	Q6NZI2		peptide-Lys258+Thr-peptide	N	MS	Thr	Arg	Leu	Lys	Thr	Lys	Glu	Asn	Vidmar et al., 2017
Caveolae-associated protein 1	Q6NZI2		peptide-Arg298+Lys-peptide	N	MS	Asp	Lys	Leu	Arg	Lys	Ser	Phe	Thr	Vidmar et al., 2017
CCR4-NOT transcription complex subunit 1	A5YKK6	624-639	Peptide-Gly629+Gly-Peptide	N	MS	Ser	Ile	Leu	Gly	Gly	Leu	Ala	Pro	Biniossek et al., 2011
Cell division control protein 42 homolog	P60953		peptide-Gly54+Leu-peptide	N	MS	Tyr	Thr	Leu	Gly	Leu	Phe	Asp	Thr	Vidmar et al., 2017
Cell division control protein 42 homolog	P60953		peptide-Cys81+Phe-peptide	N	MS	Phe	Leu	Val	Cys	Phe	Ser	Val	Val	Vidmar et al., 2017
Cell division control protein 42 homolog	P60953		peptide-Leu20+Ile-peptide	N	MS	Thr	Cys	Leu	Leu	Ile	Ser	Tyr	Thr	Vidmar et al., 2017
Cell division control protein 42 homolog	P60953		peptide-Ser83+Val-peptide	N	MS	Val	Cys	Phe	Ser	Val	Val	Ser	Pro	Vidmar et al., 2017
Cell division control protein 42 homolog	P60953		peptide-Leu112+Val-peptide	N	MS	Pro	Phe	Leu	Leu	Val	Gly	Thr	Gln	Vidmar et al., 2017
Cell growth-regulating nucleolar protein	Q9NX58	154-168	Peptide-Ala159+Asn-Peptide	N	MS	His	Pro	Val	Ala	Asn	Pro	His	Ala	Biniossek et al., 2011
Cellular nucleic acid-binding protein	P62633		peptide-Ser47+Ser-peptide	N	MS	Gln	Phe	Val	Ser	Ser	Ser	Leu	Pro	Vidmar et al., 2017
Cellular retinoic acid-binding protein 2	P29373	32-45	IIe-Ala-Val-Ala35+Ala-Peptide	N	MS	Ile	Ala	Val	Ala	Ala	Ala	Ser	Lys	Biniossek et al., 2011
cGMP-dependent 3',5'-cyclic phosphodiesterase	O00408	13-24	Ser-Gln14+Gln-Peptide	N	MS	-	-	Ser	Gln	Gln	Tyr	Pro	Ala	Biniossek et al., 2011
Chloride intracellular channel protein 1	O00299		peptide-Ala220+Ser-peptide	N	MS	Glu	Glu	Phe	Ala	Ser	Thr	Cys	Pro	Vidmar et al., 2017
Chloride intracellular channel protein 1	O00299		peptide-Thr174+Leu-peptide	N	MS	Asn	Glu	Leu	Thr	Leu	Ala	Asp	Cys	Vidmar et al., 2017
Chloride intracellular channel protein 1	O00299		peptide-Lys119+Asn-peptide	N	MS	Ala	Tyr	Ile	Lys	Asn	Ser	Asn	Pro	Vidmar et al., 2017
Chloride intracellular channel protein 1	O00299		peptide-Ala97+Ala-peptide	N	MS	Pro	Lys	Leu	Ala	Ala	Leu	Asn	Pro	Vidmar et al., 2017
Chloride intracellular channel protein 1	O00299		peptide-Lys57+Leu-peptide	N	MS	Thr	Val	Gln	Lys	Leu	Cys	Pro	Gly	Vidmar et al., 2017
Chloride intracellular channel protein 1	O00299		peptide-Gln56+Lys-peptide	N	MS	Glu	Thr	Val	Gln	Lys	Leu	Cys	Pro	Vidmar et al., 2017
Chloride intracellular channel protein 1	O00299		peptide-Gly70+Thr-peptide	N	MS	Leu	Leu	Tyr	Gly	Thr	Glu	Val	His	Vidmar et al., 2017
Chloride intracellular channel protein 1	O00299		peptide-Ala176+Asp-peptide	N	MS	Leu	Thr	Leu	Ala	Asp	Cys	Asn	Leu	Vidmar et al., 2017
Chloride intracellular channel protein 1	O00299		peptide-Asn179+Leu-peptide	N	MS	Ala	Asp	Cys	Asn	Leu	Leu	Pro	Lys	Vidmar et al., 2017
Chloride intracellular channel protein 1	O00299		peptide-Gly22+Asn-peptide	N	MS	Ala	Lys	Ile	Gly	Asn	Cys	Pro	Phe	Vidmar et al., 2017
Chloride intracellular channel protein 1	O00299		peptide-Lys135+Ala-peptide	N	MS	Gly	Leu	Leu	Lys	Ala	Leu	Lys	Val	Vidmar et al., 2017
Chloride intracellular channel protein 1	O00299		peptide-Ser211+Asn-peptide	N	MS	Arg	Tyr	Leu	Ser	Asn	Ala	Tyr	Ala	Vidmar et al., 2017
Chloride intracellular channel protein 1	O00299		peptide-Lys13+Ala-peptide	N	MS	Leu	Phe	Val	Lys	Ala	Gly	Ser	Asp	Vidmar et al., 2017
Chloride intracellular channel protein 1	O00299		peptide-Leu68+Tyr-peptide	N	MS	Pro	Phe	Leu	Leu	Tyr	Gly	Thr	Glu	Vidmar et al., 2017
Chloride intracellular channel protein 1	O00299		peptide-Leu210+Ser-peptide	N	MS	His	Arg	Tyr	Leu	Ser	Asn	Ala	Tyr	Vidmar et al., 2017
Chloride intracellular channel protein 1	O00299		peptide-Leu88+Cys-peptide	N	MS	Glu	Ala	Val	Leu	Cys	Pro	Pro	Arg	Vidmar et al., 2017
Chloride intracellular channel protein 1	O00299		peptide-Thr145+Ser-peptide	N	MS	Asn	Tyr	Leu	Thr	Ser	Pro	Leu	Pro	Vidmar et al., 2017
Chloride intracellular channel protein 4	Q9Y696		peptide-Thr222+Asn-peptide	N	MS	Arg	Tyr	Leu	Thr	Asn	Ala	Tyr	Ser	Vidmar et al., 2017
Chloride intracellular channel protein 4	Q9Y696		peptide-Lys130+Asn-peptide	N	MS	Ala	Tyr	Ile	Lys	Asn	Ser	Arg	Pro	Vidmar et al., 2017
Chloride intracellular channel protein 4	Q9Y696		peptide-Thr79+Phe-peptide	N	MS	Pro	Phe	Ile	Thr	Phe	Asn	Ser	Glu	Vidmar et al., 2017
Chloride intracellular channel protein 4	Q9Y696		peptide-Asn156+Ser-peptide	N	MS	Glu	Tyr	Leu	Asn	Ser	Pro	Leu	Pro	Vidmar et al., 2017
Chloride intracellular channel protein 4	Q9Y696		peptide-Lys85+Thr-peptide	N	MS	Ser	Glu	Val	Lys	Thr	Asp	Val	Asn	Vidmar et al., 2017
Chloride intracellular channel protein 4	Q9Y696		peptide-Lys11+Glu-peptide	N	MS	Asn	Gly	Leu	Lys	Glu	Glu	Asp	Lys	Vidmar et al., 2017
Chloride intracellular channel protein 4	Q9Y696		peptide-Glu241+Ile-peptide	N	MS	Lys	Glu	Val	Glu	Ile	Ala	Tyr	Ser	Vidmar et al., 2017
Chloride intracellular channel protein 5	Q9NZA1		peptide-Asn224+Leu-peptide	N	MS	Asp	Leu	His	Asn	Leu	Ala	Pro	Gly	Vidmar et al., 2017
Chromobox protein homolog 3	Q13185		peptide-Thr173+Trp-peptide	N	MS	Glu	Arg	Leu	Thr	Trp	His	Ser	Cys	Vidmar et al., 2017
Chromobox protein homolog 3	Q13185		peptide-Ala118+Arg-peptide	N	MS	Arg	Gly	Phe	Ala	Arg	Gly	Leu	Asp	Vidmar et al., 2017
Chromodomain-helicase-DNA-binding protein 3	Q12873	1537-1563	Peptide-Thr1552+Ser-Peptide	N	MS	Ser	Pro	Cys	Thr	Ser	Lys	Pro	Ala	Biniossek et al., 2011
Citrate synthase, mitochondrial	O75390		peptide-Thr153+Met-peptide	N	MS	His	Val	Val	Thr	Met	Leu	Asp	Asn	Vidmar et al., 2017
Citrate synthase, mitochondrial	O75390		peptide-Lys366+His-peptide	N	MS	Phe	Ala	Leu	Lys	His	Leu	Pro	Asn	Vidmar et al., 2017
Clathrin heavy chain 1	Q00610	298-320	Peptide-Thr306+Ala-Peptide	N	MS	Ile	Phe	Val	Thr	Ala	Pro	His	Glu	Biniossek et al., 2011
Clathrin heavy chain 1	Q00610	1183-1199	Peptide-Glu1187+Glu-Peptide	N	MS	Ala	Glu	Leu	Glu	Glu	Phe	Ile	Asn	Biniossek et al., 2011
Clathrin heavy chain 1	Q00610	866-881	Peptide-Glu871+Glu-Peptide	N	MS	Glu	Gly	Cys	Glu	Glu	Pro	Ala	Thr	Biniossek et al., 2011
Clathrin heavy chain 1	Q00610	144-157	Peptide-Ala149+Gly-Peptide	N	MS	Ser	Ser	Leu	Ala	Gly	Cys	Gln	Ile	Biniossek et al., 2011
Clathrin heavy chain 1	Q00610	707-730	Peptide-Ser772+Gln-Peptide	N	MS	Val	Asn	Phe	Ser	Gln	Asp	Pro	Asp	Biniossek et al., 2011
Clathrin heavy chain 1	Q00610	355-366	Asn-Asn-Leu-Ala358+Gly-Peptide	N	MS	Asn	Asn	Leu	Ala	Gly	Ala	Glu	Glu	Biniossek et al., 2011
Clathrin heavy chain 1	Q00610		peptide-Thr1608+Lys-peptide	N	MS	Glu	Tyr	Leu	Thr	Lys	Val	Asp	Lys	Vidmar et al., 2017
Clathrin heavy chain 1	Q00610		peptide-Thr606+His-peptide	N	MS	Gln	Met	Phe	Thr	His	Tyr	Asp	Arg	Vidmar et al., 2017
Clathrin heavy chain 1	Q00610		peptide-Ala1595+Met-peptide	N	MS	Met	Asp	Phe	Ala	Met	Pro	Tyr	Phe	Vidmar et al., 2017
Clathrin heavy chain 1	Q00610		peptide-Ser980+Glu-peptide	N	MS	Thr	Ala	Leu	Ser	Glu	Thr	Gln	Asp	Vidmar et al., 2017
Clathrin heavy chain 1	Q00610		peptide-Leu167+Thr-peptide	N	MS	Trp	Leu	Leu	Leu	Thr	Gly	Ile	Ser	Vidmar et al., 2017
Clathrin heavy chain 1	Q00610		peptide-Asn1464+Glu-peptide	N	MS	Lys	Ser	Val	Asn	Glu	Ser	Leu	Asn	Vidmar et al., 2017
Clathrin heavy chain 1	Q00610		peptide-Glu863+Ala-peptide	N	MS	Pro	Trp	Leu	Glu	Ala	Arg	Ile	His	Vidmar et al., 2017
Clathrin heavy chain 1	Q00610		peptide-Gln1539+Tyr-peptide	N	MS	Asp	Ala	Met	Gln	Tyr	Ala	Ser	Glu	Vidmar et al., 2017
Clathrin heavy chain 1	Q00610		peptide-Ala880+Lys-peptide	N	MS	Asn	Ala	Leu	Ala	Lys	Ile	Tyr	Ile	Vidmar et al., 2017
Clathrin heavy chain 1	Q00610		peptide-Arg393+Thr-peptide	N	MS	Gly	Ile	Leu	Arg	Thr	Pro	Asp	Thr	Vidmar et al., 2017
Clathrin heavy chain 1	Q00610		peptide-Glu962+Ser-peptide	N	MS	Val	Leu	Leu	Glu	Ser	Asn	Pro	Tyr	Vidmar et al., 2017
Clathrin heavy chain 1	Q00610		peptide-Leu422+Asp-peptide	N	MS	Gly	Ile	Leu	Leu	Asp	Gln	Gly	Gln	Vidmar et al., 2017
Clathrin heavy chain 1	Q00610		peptide-Ala384+Ala-peptide	N	MS	Ala	Lys	Val	Ala	Ala	Asn	Ala	Pro	Vidmar et al., 2017
Clathrin heavy chain 1	Q00610		peptide-Lys571+Asn-peptide	N	MS	Asp	Ala	Leu	Lys	Asn	Asn	Arg	Pro	Vidmar et al., 2017
Clathrin light chain A	P09496		peptide-Gln104+Ser-peptide	N	MS	Asp	Arg	Leu	Gln	Ser	Glu	Pro	Glu	Vidmar et al., 2017
Clathrin light chain A	P09496		peptide-Asn200+Asp-peptide	N	MS	Ala	Phe	Val	Asn	Asp	Ile	Asp	Glu	Vidmar et al., 2017
Coactosin-like protein	Q14019		peptide-Ala109+Lys-peptide	N	MS	Gln	Asn	Phe	Ala	Lys	Glu	Phe	Val	Vidmar et al., 2017
Coatomer subunit alpha	P53621		peptide-Thr761+Ala-peptide	N	MS	Ala	Tyr	Leu	Thr	Ala	Ala	Thr	His	Vidmar et al., 2017
Coatomer subunit zeta-1	P61923	113-145	Peptide-Glu136+Ser-Peptide	N	MS	Val	Ile	Leu	Glu	Ser	Asp	Pro	Gln	Biniossek et al., 2011
Coatomer subunit zeta-1	P61923		peptide-Ala147+Leu-peptide	N	MS	His	Arg	Val	Ala	Leu	Arg	Gly	Glu	Vidmar et al., 2017
Coatomer subunit zeta-1	P61923		peptide-Lys14+Ala-peptide	N	MS	Tyr	Thr	Val	Lys	Ala	Ile	Leu	Ile	Vidmar et al., 2017
Cofilin-1	P23528	54-73	Peptide-Gly61+Gln-Peptide	N	MS	Gly	Asp	Val	Gly	Gln	Thr	Val	Asp	Biniossek et al., 2011
Cofilin-1	P23528	97-112	Peptide-Phe103+Trp-Peptide	N	MS	Val	Phe	Ile	Phe	Trp	Ala	Pro	Glu	Biniossek et al., 2011
Cofilin-1	P23528		peptide-Cys39+Leu-peptide	N	MS	Val	Leu	Phe	Cys	Leu	Ser	Glu	Asp	Vidmar et al., 2017
Cofilin-1	P23528		peptide-Tyr85+Asp-peptide	N	MS	Tyr	Ala	Leu	Tyr	Asp	Ala	Thr	Tyr	Vidmar et al., 2017
Cofilin-1	P23528		peptide-Asp86+Ala-peptide	N	MS	Ala	Leu	Tyr	Asp	Ala	Thr	Tyr	Glu	Vidmar et al., 2017
Cofilin-1	P23528		peptide-Lys73+Met-peptide	N	MS	Thr	Phe	Val	Lys	Met	Leu	Pro	Asp	Vidmar et al., 2017
Cofilin-1	P23528		peptide-Ile102+Phe-peptide	N	MS	Leu	Val	Phe	Ile	Phe	Trp	Ala	Pro	Vidmar et al., 2017
Cofilin-1	P23528		peptide-Gly58+Asp-peptide	N	MS	Ile	Leu	Val	Gly	Asp	Val	Gly	Gln	Vidmar et al., 2017
Cofilin-1	P23528		peptide-Phe101+Ile-peptide	N	MS	Asp	Leu	Val	Phe	Ile	Phe	Trp	Ala	Vidmar et al., 2017
Cofilin-1	P23528		peptide-Leu40+Ser-peptide	N	MS	Leu	Phe	Cys	Leu	Ser	Glu	Asp	Lys	Vidmar et al., 2017
Cofilin-1	P23528		peptide-Ala6+Val-peptide	N	MS	Ser	Gly	Val	Ala	Val	Ser	Asp	Gly	Vidmar et al., 2017
Cofilin-1	P23528		peptide-Ser8+Asp-peptide	N	MS	Val	Ala	Val	Ser	Asp	Gly	Val	Ile	Vidmar et al., 2017
Cofilin-1	P23528		peptide-Gln136+Ala-peptide	N	MS	His	Glu	Leu	Gln	Ala	Asn	Cys	Tyr	Vidmar et al., 2017
Cofilin-2	Q9Y281		peptide-Gly58+Asp-peptide	N	MS	Ile	Leu	Val	Gly	Asp	Ile	Gly	Asp	Vidmar et al., 2017
Coiled-coil-helix-coiled-coil-helix domain-containing protein 2, mitochondrial	Q9Y6H1	120-132	Peptide-Glu123+Cys-Peptide	N	MS	Gln	Phe	Leu	Glu	Cys	Ala	Gln	Asn	Biniossek et al., 2011
Collagen alpha-1(I) chain	P02452		peptide-Gly776+Ala-peptide	N	MS	Gly	Pro	Ala	Gly	Ala	Pro	Gly	Asp	Vidmar et al., 2017
Collagen alpha-2(XI) chain	P13942		peptide-Leu396+Val-peptide	N	MS	Pro	Gly	Met	Leu	Val	Glu	Gly	Pro	Vidmar et al., 2017
Complement component 1 Q subcomponent-binding protein, mitochondrial	Q07021	129-154	Peptide-Asn137+Ser-Peptide	N	MS	Asn	Ile	Asn	Asn	Ser	Ile	Pro	Pro	Biniossek et al., 2011
Complement component 1 Q subcomponent-binding protein, mitochondrial	Q07021		peptide-Thr225+Leu-peptide	N	MS	Thr	Asn	Tyr	Thr	Leu	Asn	Thr	Asp	Vidmar et al., 2017
Complement component 1 Q subcomponent-binding protein, mitochondrial	Q07021		peptide-Arg122+Lys-peptide	N	MS	Lys	Leu	Val	Arg	Lys	Val	Ala	Gly	Vidmar et al., 2017
Complement component 1 Q subcomponent-binding protein, mitochondrial	Q07021		peptide-Leu184+Asp-peptide	N	MS	Ala	Leu	Val	Leu	Asp	Cys	His	Tyr	Vidmar et al., 2017
Complement component 1 Q subcomponent-binding protein, mitochondrial	Q07021		peptide-Glu112+Leu-peptide	N	MS	Trp	Glu	Leu	Glu	Leu	Asn	Gly	Thr	Vidmar et al., 2017
Complement component 1 Q subcomponent-binding protein, mitochondrial	Q07021		peptide-Gln212+Ser-peptide	N	MS	Val	Ser	Phe	Gln	Ser	Thr	Gly	Glu	Vidmar et al., 2017
Constitutive coactivator of PPAR-gamma-like protein 1	Q9NZB2		peptide-Thr544+Thr-peptide	N	MS	Met	Asp	Ile	Thr	Thr	Pro	Pro	Leu	Vidmar et al., 2017
COP9 signalosome complex subunit 4	Q9BT78	64-82	Peptide-Thr71+His-Peptide	N	MS	Asp	Phe	Cys	Thr	His	Leu	Pro	Asn	Biniossek et al., 2011
Copine-1	Q99829	438-471	Peptide-Asp462+Ala-Peptide	N	MS	Glu	Gln	Leu	Asp	Ala	Asp	Gly	Gly	Biniossek et al., 2011
Core histone macro-H2A.1	O75367		peptide-Thr99+Ile-peptide	N	MS	Lys	Gly	Val	Thr	Ile	Ala	Ser	Gly	Vidmar et al., 2017
Core histone macro-H2A.1	O75367		peptide-Leu83+Ala-peptide	N	MS	His	Ile	Leu	Leu	Ala	Val	Ala	Asn	Vidmar et al., 2017
Coronin-1B	Q9BR76		peptide-Glu375+Ala-peptide	N	MS	Ala	Ala	Leu	Glu	Ala	Glu	Glu	Trp	Vidmar et al., 2017
Coronin-1C	Q9ULV4		peptide-Glu373+Ala-peptide	N	MS	Ala	Ala	Leu	Glu	Ala	Glu	Glu	Trp	Vidmar et al., 2017
Coronin-1C	Q9ULV4		peptide-Thr349+Val-peptide	N	MS	Ile	Ile	Met	Thr	Val	Pro	Arg	Lys	Vidmar et al., 2017
Coronin-1C	Q9ULV4		peptide-Lys446+Glu-peptide	N	MS	Glu	Ile	Leu	Lys	Glu	Ile	Lys	Ser	Vidmar et al., 2017
Coronin-1C	Q9ULV4		peptide-Gln436+Asn-peptide	N	MS	Ala	Ser	Val	Gln	Asn	Glu	Ala	Lys	Vidmar et al., 2017
Creatine kinase B-type	P12277	46-86	Peptide-Gly73+Cys-Peptide	N	MS	Met	Thr	Val	Gly	Cys	Val	Ala	Gly	Biniossek et al., 2011
Creatine kinase B-type	P12277	321-341	Peptide-Gly331+Gly-Peptide	N	MS	Ala	Ala	Val	Gly	Gly	Val	Phe	Asp	Biniossek et al., 2011
Creatine kinase B-type	P12277	367-381	Leu-Glu-Gln-Gly370+Gln-Peptide	N	MS	Leu	Glu	Gln	Gly	Gln	Ala	Ile	Asp	Biniossek et al., 2011
Creatine kinase B-type	P12277	46-68	Peptide-Gln58+Thr-Peptide	N	MS	Asp	Val	Ile	Gln	Thr	Gly	Val	Asp	Biniossek et al., 2011
Creatine kinase B-type	P12277		peptide-Lys11+Leu-peptide	N	MS	Asn	Ala	Leu	Lys	Leu	Arg	Phe	Pro	Vidmar et al., 2017
Creatine kinase B-type	P12277		peptide-Thr180+Glu-peptide	N	MS	Lys	Ser	Met	Thr	Glu	Ala	Glu	Gln	Vidmar et al., 2017
Creatine kinase B-type	P12277		peptide-Ser163+Ser-peptide	N	MS	Glu	Ala	Leu	Ser	Ser	Leu	Asp	Gly	Vidmar et al., 2017
Creatine kinase U-type, mitochondrial	P12532	79-103	Peptide-Gln91+Thr-Peptide	N	MS	Gln	Cys	Ile	Gln	Thr	Gly	Val	Asp	Biniossek et al., 2011
Cullin-associated NEDD8-dissociated protein 1	Q86VP6	991-1005	Phe-Thr-IIe-Ser994+Asp-Peptide	N	MS	Phe	Thr	Ile	Ser	Asp	His	Pro	Gln	Biniossek et al., 2011
Cystatin-B	P04080	1-24	Peptide-Thr9+Gln-Peptide	N	MS	Pro	Ser	Ala	Thr	Gln	Pro	Ala	Thr	Biniossek et al., 2011
Cystatin-B	P04080	1-24	Peptide-Ala14+Glu-Peptide	N	MS	Pro	Ala	Thr	Ala	Glu	Thr	Gln	His	Biniossek et al., 2011
Cystatin-C	P01034		peptide-Gly37+Gly-peptide	N	MS	Arg	Leu	Val	Gly	Gly	Pro	Met	Asp	Vidmar et al., 2017
Cytochrome b5 type B	O43169		peptide-Asn53+Glu-peptide	N	MS	Arg	Phe	Leu	Asn	Glu	His	Pro	Gly	Vidmar et al., 2017
Cytochrome c oxidase subunit 4 isoform 1, mitochondrial	P13073		peptide-Lys29+Ser-peptide	N	MS	Ser	Val	Val	Lys	Ser	Glu	Asp	Phe	Vidmar et al., 2017
Cytochrome c oxidase subunit 4 isoform 1, mitochondrial	P13073		peptide-Ala157+Ser-peptide	N	MS	Gln	Gly	Leu	Ala	Ser	Lys	Trp	Asp	Vidmar et al., 2017
Cytochrome c oxidase subunit 4 isoform 1, mitochondrial	P13073		peptide-Ser34+Leu-peptide	N	MS	Glu	Asp	Phe	Ser	Leu	Pro	Ala	Tyr	Vidmar et al., 2017
Cytoplasmic dynein 1 heavy chain 1	Q14204	3040-3052	Peptide-Leu3044+Asp-Peptide	N	MS	Gly	Leu	Met	Leu	Asp	Ser	His	Glu	Biniossek et al., 2011
Cytoplasmic dynein 1 heavy chain 1	Q14204	3255-3266	Val-Met-Ser3257+Gln-Peptide	N	MS	-	Val	Met	Ser	Gln	Glu	Ile	Gln	Biniossek et al., 2011
Cytoplasmic dynein 1 heavy chain 1	Q14204	2706-2720	Peptide-Gly2710+Ala-Peptide	N	MS	Gln	Phe	Val	Gly	Ala	Cys	Asn	Pro	Biniossek et al., 2011
Cytoplasmic dynein 1 heavy chain 1	Q14204		peptide-Tyr3130+Asp-peptide	N	MS	Pro	Val	Val	Tyr	Asp	Lys	Leu	Pro	Vidmar et al., 2017
Cytoplasmic dynein 1 heavy chain 1	Q14204		peptide-Lys3718+Ala-peptide	N	MS	Glu	Val	Leu	Lys	Ala	Glu	Arg	Pro	Vidmar et al., 2017
Cytoplasmic dynein 1 heavy chain 1	Q14204		peptide-Gly4032+Thr-peptide	N	MS	His	Ile	Val	Gly	Thr	Glu	Val	Lys	Vidmar et al., 2017
Cytoplasmic dynein 1 heavy chain 1	Q14204		peptide-Thr1259+Asp-peptide	N	MS	Asp	Leu	Leu	Thr	Asp	Trp	Glu	Lys	Vidmar et al., 2017
Cytoplasmic dynein 1 heavy chain 1	Q14204		peptide-Gln1320+Val-peptide	N	MS	Glu	Arg	Val	Gln	Val	Ala	Leu	Glu	Vidmar et al., 2017
Cytoplasmic dynein 1 heavy chain 1	Q14204		peptide-Gly4322+Leu-peptide	N	MS	Ser	Trp	Leu	Gly	Leu	Pro	Asn	Asn	Vidmar et al., 2017
Cytoplasmic dynein 1 heavy chain 1	Q14204		peptide-Ser206+Leu-peptide	N	MS	Pro	Glu	Ile	Ser	Leu	Pro	Ile	His	Vidmar et al., 2017
Cytosol aminopeptidase	P28838		peptide-Thr409+Asn-peptide	N	MS	Gly	Val	Phe	Thr	Asn	Ser	Ser	Trp	Vidmar et al., 2017
Cytosolic Fe-S cluster assembly factor NARFL	Q9H6Q4	280-312	Peptide-Cys300+Ser-Peptide	N	MS	Asp	Ser	Leu	Cys	Ser	Gly	Ala	Ser	Biniossek et al., 2011
Cytosolic Fe-S cluster assembly factor NUBP1	P53384	1-18	Met-Glu2+Glu-Peptide	N	MS	-	-	Met	Glu	Glu	Val	Pro	His	Biniossek et al., 2011
D-3-phosphoglycerate dehydrogenase	O43175	39-54	Peptide-Gln46+Asp-Peptide	N	MS	Ala	Glu	Leu	Gln	Asp	Cys	Glu	Gly	Biniossek et al., 2011
D-dopachrome decarboxylase	P30046	2-14	Pro-Phe-Leu-Glu5+Leu-Peptide	N	MS	Pro	Phe	Leu	Glu	Leu	Asp	Thr	Asn	Biniossek et al., 2011
D-tyrosyl-tRNA(Tyr) deacylase 1	Q8TEA8	127-158	Peptide-Glu146+Ser-Peptide	N	MS	Ile	Glu	Leu	Glu	Ser	Pro	Ala	Pro	Biniossek et al., 2011
DAZ-associated protein 1	Q96EP5	115-130	IIe-Phe-Val-Gly118+Gly-Peptide	N	MS	Ile	Phe	Val	Gly	Gly	Ile	Pro	His	Biniossek et al., 2011
Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial	Q13011	33-59	Peptide-Gly48+Glu-Peptide	N	MS	Val	Ala	Leu	Gly	Glu	Ala	Pro	Asp	Biniossek et al., 2011
Delta-1-pyrroline-5-carboxylate synthase	P54886	768-781	Peptide-Ser772+Asp-Peptide	N	MS	His	Val	Val	Ser	Asp	Phe	Ser	Glu	Biniossek et al., 2011
Density-regulated protein	O43583		peptide-Gln179+Glu-peptide	N	MS	Asp	Val	Ile	Gln	Glu	Lys	Trp	Pro	Vidmar et al., 2017
Density-regulated protein	O43583		peptide-Glu58+Lys-peptide	N	MS	Gln	Trp	Leu	Glu	Lys	Asn	Phe	Pro	Vidmar et al., 2017
Density-regulated protein	O43583		peptide-Lys22+Leu-peptide	N	MS	Asn	Ser	Ala	Lys	Leu	Asp	Ala	Asp	Vidmar et al., 2017
Destrin	P60981		peptide-Cys39+Leu-peptide	N	MS	Val	Ile	Phe	Cys	Leu	Ser	Ala	Asp	Vidmar et al., 2017
Destrin	P60981		peptide-Gln136+Ala-peptide	N	MS	His	Glu	Cys	Gln	Ala	Asn	Gly	Pro	Vidmar et al., 2017
Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial	P36957		peptide-Ser200+Ala-peptide	N	MS	Lys	Pro	Val	Ser	Ala	Val	Lys	Pro	Vidmar et al., 2017
Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial	P36957		peptide-Gln183+Met-peptide	N	MS	Ile	Pro	Thr	Gln	Met	Pro	Pro	Val	Vidmar et al., 2017
Dihydropyrimidinase-related protein 2	Q16555	76-94	Peptide-Thr84+Ser-Peptide	N	MS	Gln	Gly	Met	Thr	Ser	Ala	Asp	Asp	Biniossek et al., 2011
Dipeptidyl peptidase 3	Q9NY33	126-141	Val-IIe-Leu-Gly129+Ser-Peptide	N	MS	Val	Ile	Leu	Gly	Ser	Glu	Ala	Ala	Biniossek et al., 2011
DJ-1 putative peptidase	Q99497	100-122	Peptide-Leu113+Ala-Peptide	N	MS	Thr	Ala	Leu	Leu	Ala	His	Glu	Ile	Biniossek et al., 2011
DJ-1 putative peptidase	Q99497	49-63	Asp-Val-Val-IIe52+Cys-Peptide	N	MS	Asp	Val	Val	Ile	Cys	Pro	Asp	Ala	Biniossek et al., 2011
DNA (cytosine-5)-methyltransferase 1	P26358		peptide-Arg1426+His-peptide	N	MS	Ala	Arg	Met	Arg	His	Ile	Pro	Leu	Vidmar et al., 2017
DNA replication licensing factor MCM6	Q14566	1-19	Met-Asp-Leu-Ala4+Ala-Peptide	N	MS	Met	Asp	Leu	Ala	Ala	Ala	Ala	Glu	Biniossek et al., 2011
DNA-dependent protein kinase catalytic subunit	P78527	1896-1913	Peptide-Phe1900+His-Peptide	N	MS	Asn	Gln	Val	Phe	His	Gly	Ser	Cys	Biniossek et al., 2011
DNA-dependent protein kinase catalytic subunit	P78527	1120-1136	Peptide-Gln1125+Gln-Peptide	N	MS	Gly	Thr	Ile	Gln	Gln	Cys	Cys	Asp	Biniossek et al., 2011
DNA-dependent protein kinase catalytic subunit	P78527	490-499	IIe-Cys491+Ser-Peptide	N	MS	-	-	Ile	Cys	Ser	Lys	Pro	Val	Biniossek et al., 2011
DNA-dependent protein kinase catalytic subunit	P78527	2599-2619	Peptide-Glu2608+Thr-Peptide	N	MS	Met	Phe	Val	Glu	Thr	Gln	Ala	Ser	Biniossek et al., 2011
DNA-directed RNA polymerases I, II, and III subunit RPABC4	P53803	12-29	Peptide-Gly20+Glu-Peptide	N	MS	Tyr	Ile	Cys	Gly	Glu	Cys	His	Thr	Biniossek et al., 2011
DnaJ homolog subfamily A member 1	P31689	284-296	Peptide-Thr288+Ser-Peptide	N	MS	Ile	Val	Ile	Thr	Ser	His	Pro	Gly	Biniossek et al., 2011
DnaJ homolog subfamily A member 1	P31689	4-24	Peptide-Gly12+Val-Peptide	N	MS	Asp	Val	Leu	Gly	Val	Lys	Pro	Asn	Biniossek et al., 2011
DnaJ homolog subfamily A member 1	P31689		peptide-Glu323+Phe-peptide	N	MS	Leu	Ile	Ile	Glu	Phe	Lys	Val	Asn	Vidmar et al., 2017
DnaJ homolog subfamily A member 1	P31689		peptide-Glu343+Lys-peptide	N	MS	Ser	Leu	Leu	Glu	Lys	Leu	Leu	Pro	Vidmar et al., 2017
DnaJ homolog subfamily A member 1	P31689		peptide-Gly82+Ser-peptide	N	MS	Gly	Gly	Phe	Gly	Ser	Pro	Met	Asp	Vidmar et al., 2017
DnaJ homolog subfamily B member 1	P25685		peptide-Lys213+Glu-peptide	N	MS	Lys	Gly	Trp	Lys	Glu	Gly	Thr	Lys	Vidmar et al., 2017
DnaJ homolog subfamily B member 1	P25685		peptide-Asn272+Val-peptide	N	MS	Cys	Thr	Val	Asn	Val	Pro	Thr	Leu	Vidmar et al., 2017
DnaJ homolog subfamily B member 1	P25685		peptide-Gly107+Gly-peptide	N	MS	Glu	Phe	Phe	Gly	Gly	Arg	Asn	Pro	Vidmar et al., 2017
DnaJ homolog subfamily B member 1	P25685		peptide-Thr270+Val-peptide	N	MS	Cys	Gly	Cys	Thr	Val	Asn	Val	Pro	Vidmar et al., 2017
Double-stranded RNA-binding protein Staufen homolog 1	O95793	356-377	Val-Pro-Gln358+Ala-Peptide	N	MS	-	Val	Pro	Gln	Ala	Gln	Pro	Thr	Biniossek et al., 2011
Double-stranded RNA-specific adenosine deaminase	P55265	503-534	Peptide-Glu525+Gln-Peptide	N	MS	Asn	Met	Ile	Glu	Gln	Ser	Gly	Pro	Biniossek et al., 2011
Dynactin subunit 2	Q13561		peptide-Thr39+Ser-peptide	N	MS	Glu	Glu	Leu	Thr	Ser	Thr	Ser	Val	Vidmar et al., 2017
Dynactin subunit 2	Q13561		peptide-Val110+Gln-peptide	N	MS	Leu	His	Glu	Val	Gln	Glu	Leu	Thr	Vidmar et al., 2017
Dynactin subunit 2	Q13561		peptide-Thr114+Thr-peptide	N	MS	Gln	Glu	Leu	Thr	Thr	Glu	Val	Glu	Vidmar et al., 2017
E3 ubiquitin-protein ligase HUWE1	Q7Z6Z7	1895-1908	IIe1895+Ala-Peptide	N	MS	-	-	-	Ile	Ala	Leu	Pro	Ala	Biniossek et al., 2011
E3 ubiquitin-protein ligase NEDD4-like	Q96PU5	946-954	Leu-Asp947+Leu-Peptide	N	MS	-	-	Leu	Asp	Leu	Pro	Pro	Tyr	Biniossek et al., 2011
E3 ubiquitin-protein ligase UBR4	Q5T4S7	2884-2914	Peptide-Asp2903+Ser-Peptide	N	MS	Ser	Ala	Val	Asp	Ser	Val	Ala	Gly	Biniossek et al., 2011
eIF-2-alpha kinase activator GCN1	Q92616		peptide-Lys1371+Glu-peptide	N	MS	Pro	Ala	Ile	Lys	Glu	Asp	Ala	Gly	Vidmar et al., 2017
Elastin	P15502		peptide-Gly119+Gly-peptide	N	MS	Pro	Gly	Val	Gly	Gly	Leu	Gly	Val	Vidmar et al., 2017
Electron transfer flavoprotein subunit alpha, mitochondrial	P13804	170-187	Peptide-Asp174+Ala-Peptide	N	MS	Thr	Ser	Phe	Asp	Ala	Ala	Ala	Thr	Biniossek et al., 2011
Electron transfer flavoprotein subunit alpha, mitochondrial	P13804		peptide-Ala298+Ile-peptide	N	MS	Thr	Ile	Val	Ala	Ile	Asn	Lys	Asp	Vidmar et al., 2017
Elongation factor 1-alpha 1	P68104		peptide-Gly195+Trp-peptide	N	MS	Pro	Ile	Ser	Gly	Trp	Asn	Gly	Asp	Vidmar et al., 2017
Elongation factor 1-alpha 1	P68104		peptide-Gln251+Asp-peptide	N	MS	Leu	Pro	Leu	Gln	Asp	Val	Tyr	Lys	Vidmar et al., 2017
Elongation factor 1-alpha 1	P68104		peptide-Lys179+Lys-peptide	N	MS	Thr	Tyr	Ile	Lys	Lys	Ile	Gly	Tyr	Vidmar et al., 2017
Elongation factor 1-alpha 1	P68104		peptide-Ala434+Val-peptide	N	MS	Gln	Thr	Val	Ala	Val	Gly	Val	Ile	Vidmar et al., 2017
Elongation factor 1-alpha 1	P68104		peptide-Met201+Leu-peptide	N	MS	Gly	Asp	Asn	Met	Leu	Glu	Pro	Ser	Vidmar et al., 2017
Elongation factor 1-alpha 1	P68104		peptide-Asp403+Met-peptide	N	MS	Ala	Ile	Val	Asp	Met	Val	Pro	Gly	Vidmar et al., 2017
Elongation factor 1-alpha 1	P68104		peptide-Glu230+Ala-peptide	N	MS	Thr	Leu	Leu	Glu	Ala	Leu	Asp	Cys	Vidmar et al., 2017
Elongation factor 1-alpha 1	P68104		peptide-Ser175+Thr-peptide	N	MS	Lys	Glu	Val	Ser	Thr	Tyr	Ile	Lys	Vidmar et al., 2017
Elongation factor 1-alpha 1	P68104		peptide-Thr142+Leu-peptide	N	MS	Leu	Ala	Tyr	Thr	Leu	Gly	Val	Lys	Vidmar et al., 2017
Elongation factor 1-alpha 1	P68104		peptide-Thr341+Ala-peptide	N	MS	Ala	Gly	Phe	Thr	Ala	Gln	Val	Ile	Vidmar et al., 2017
Elongation factor 1-alpha 1	P68104		peptide-Lys55+Tyr-peptide	N	MS	Gly	Ser	Phe	Lys	Tyr	Ala	Trp	Val	Vidmar et al., 2017
Elongation factor 1-alpha 1	P68104		peptide-Lys376+Glu-peptide	N	MS	Ala	Glu	Leu	Lys	Glu	Lys	Ile	Asp	Vidmar et al., 2017
Elongation factor 1-alpha 1	P68104		peptide-Lys255+Ile-peptide	N	MS	Asp	Val	Tyr	Lys	Ile	Gly	Gly	Ile	Vidmar et al., 2017
Elongation factor 1-alpha 1	P68104		peptide-Leu236+Pro-peptide	N	MS	Asp	Cys	Ile	Leu	Pro	Pro	Thr	Arg	Vidmar et al., 2017
Elongation factor 1-alpha 1	P68104		peptide-Thr217+Arg-peptide	N	MS	Trp	Lys	Val	Thr	Arg	Lys	Asp	Gly	Vidmar et al., 2017
Elongation factor 1-alpha 1	P68104		peptide-Lys215+Val-peptide	N	MS	Lys	Gly	Trp	Lys	Val	Thr	Arg	Lys	Vidmar et al., 2017
Elongation factor 1-alpha 1	P68104		peptide-Ala425+Val-peptide	N	MS	Gly	Arg	Phe	Ala	Val	Arg	Asp	Met	Vidmar et al., 2017
Elongation factor 1-alpha 1	P68104		peptide-Lys290+Ser-peptide	N	MS	Thr	Glu	Val	Lys	Ser	Val	Glu	Met	Vidmar et al., 2017
Elongation factor 1-alpha 1	P68104		peptide-Ala326+Gly-peptide	N	MS	Gly	Asn	Val	Ala	Gly	Asp	Ser	Lys	Vidmar et al., 2017
Elongation factor 1-alpha 1	P68104		peptide-Gly257+Gly-peptide	N	MS	Tyr	Lys	Ile	Gly	Gly	Ile	Gly	Thr	Vidmar et al., 2017
Elongation factor 1-alpha 1	P68104		peptide-Leu202+Glu-peptide	N	MS	Asp	Asn	Met	Leu	Glu	Pro	Ser	Ala	Vidmar et al., 2017
Elongation factor 1-alpha 1	P68104		peptide-Glu268+Thr-peptide	N	MS	Gly	Arg	Val	Glu	Thr	Gly	Val	Leu	Vidmar et al., 2017
Elongation factor 1-alpha 1	P68104		peptide-Lys212+Gly-peptide	N	MS	Pro	Trp	Phe	Lys	Gly	Trp	Lys	Val	Vidmar et al., 2017
Elongation factor 1-alpha 1	P68104		peptide-Gly422+Arg-peptide	N	MS	Pro	Pro	Leu	Gly	Arg	Phe	Ala	Val	Vidmar et al., 2017
Elongation factor 1-alpha 1	P68104		peptide-Gly14+His-peptide	N	MS	Val	Val	Ile	Gly	His	Val	Asp	Ser	Vidmar et al., 2017
Elongation factor 1-alpha 1	P68104		peptide-Lys172+Glu-peptide	N	MS	Glu	Ile	Val	Lys	Glu	Val	Ser	Thr	Vidmar et al., 2017
Elongation factor 1-alpha 1	P68104		peptide-Lys318+Asp-peptide	N	MS	Val	Ser	Val	Lys	Asp	Val	Arg	Arg	Vidmar et al., 2017
Elongation factor 1-alpha 1	P68104		peptide-Asp233+Cys-peptide	N	MS	Glu	Ala	Leu	Asp	Cys	Ile	Leu	Pro	Vidmar et al., 2017
Elongation factor 1-alpha 1	P68104		peptide-Arg321+Arg-peptide	N	MS	Lys	Asp	Val	Arg	Arg	Gly	Asn	Val	Vidmar et al., 2017
Elongation factor 1-alpha 1	P68104		peptide-Leu229+Glu-peptide	N	MS	Thr	Thr	Leu	Leu	Glu	Ala	Leu	Asp	Vidmar et al., 2017
Elongation factor 1-alpha 2	Q05639	331-371	Peptide-IIe361+Asp-Peptide	N	MS	Ser	Pro	Val	Ile	Asp	Cys	His	Thr	Biniossek et al., 2011
Elongation factor 1-alpha 2	Q05639	6-20	Peptide-Val12+IIe-Peptide	N	MS	Asn	Ile	Val	Val	Ile	Gly	His	Val	Biniossek et al., 2011
Elongation factor 1-beta	P24534		peptide-Arg119+Glu-peptide	N	MS	Lys	Arg	Leu	Arg	Glu	Glu	Arg	Leu	Vidmar et al., 2017
Elongation factor 1-beta	P24534		peptide-Gln188+Ile-peptide	N	MS	Lys	Lys	Leu	Gln	Ile	Gln	Cys	Val	Vidmar et al., 2017
Elongation factor 1-beta	P24534		peptide-Ala20+Asp-peptide	N	MS	Asp	Tyr	Leu	Ala	Asp	Lys	Ser	Tyr	Vidmar et al., 2017
Elongation factor 1-beta	P24534		peptide-Leu144+Asp-peptide	N	MS	Ser	Ile	Leu	Leu	Asp	Val	Lys	Pro	Vidmar et al., 2017
Elongation factor 1-beta	P24534		peptide-Lys60+Ser-peptide	N	MS	Asn	His	Ile	Lys	Ser	Tyr	Glu	Lys	Vidmar et al., 2017
Elongation factor 1-beta	P24534		peptide-Arg54+Trp-peptide	N	MS	His	Ala	Leu	Arg	Trp	Tyr	Asn	His	Vidmar et al., 2017
Elongation factor 1-delta	P29692		peptide-Asp201+Val-peptide	N	MS	Ile	Leu	Leu	Asp	Val	Lys	Pro	Trp	Vidmar et al., 2017
Elongation factor 1-delta	P29692		peptide-Leu6+Ala-peptide	N	MS	Thr	Asn	Phe	Leu	Ala	His	Glu	Lys	Vidmar et al., 2017
Elongation factor 1-delta	P29692		peptide-Leu200+Asp-peptide	N	MS	Ser	Ile	Leu	Leu	Asp	Val	Lys	Pro	Vidmar et al., 2017
Elongation factor 1-delta	P29692		peptide-Arg48+Asp-peptide	N	MS	Val	Ile	Leu	Arg	Asp	Ile	Ala	Arg	Vidmar et al., 2017
Elongation factor 1-delta	P29692		peptide-Gln271+Ser-peptide	N	MS	Glu	His	Val	Gln	Ser	Val	Asp	Ile	Vidmar et al., 2017
Elongation factor 1-delta	P29692		peptide-Ala34+Gly-peptide	N	MS	Gly	Pro	Val	Ala	Gly	Ala	Ser	Arg	Vidmar et al., 2017
Elongation factor 1-delta	P29692		peptide-Lys17+Tyr-peptide	N	MS	Asp	Lys	Phe	Lys	Tyr	Asp	Asp	Ala	Vidmar et al., 2017
Elongation factor 1-delta	P29692		peptide-Gly63+Ser-peptide	N	MS	Ser	Leu	Ala	Gly	Ser	Ser	Gly	Pro	Vidmar et al., 2017
Elongation factor 1-delta	P29692		peptide-Glu260+Glu-peptide	N	MS	Asp	Leu	Leu	Glu	Glu	Glu	Ile	Thr	Vidmar et al., 2017
Elongation factor 1-delta	P29692		peptide-Arg83+Ile-peptide	N	MS	Leu	Val	Val	Arg	Ile	Ala	Ser	Leu	Vidmar et al., 2017
Elongation factor 1-gamma	P26641		peptide-Ala21+Ala-peptide	N	MS	Ala	Leu	Ile	Ala	Ala	Gln	Tyr	Ser	Vidmar et al., 2017
Elongation factor 1-gamma	P26641		peptide-Trp311+Glu-peptide	N	MS	Pro	Tyr	Phe	Trp	Glu	His	Phe	Asp	Vidmar et al., 2017
Elongation factor 1-gamma	P26641		peptide-Ala271+Ala-peptide	N	MS	Gln	Ala	Leu	Ala	Ala	Glu	Pro	Lys	Vidmar et al., 2017
Elongation factor 1-gamma	P26641		peptide-Leu290+Asp-peptide	N	MS	Thr	Phe	Val	Leu	Asp	Glu	Phe	Lys	Vidmar et al., 2017
Elongation factor 1-gamma	P26641		peptide-Ala281+His-peptide	N	MS	Asp	Pro	Phe	Ala	His	Leu	Pro	Lys	Vidmar et al., 2017
Elongation factor 1-gamma	P26641		peptide-Tyr7+Thr-peptide	N	MS	Gly	Thr	Leu	Tyr	Thr	Tyr	Pro	Glu	Vidmar et al., 2017
Elongation factor 1-gamma	P26641		peptide-Tyr323+Ser-peptide	N	MS	Ser	Leu	Trp	Tyr	Ser	Glu	Tyr	Arg	Vidmar et al., 2017
Elongation factor 1-gamma	P26641		peptide-Gly427+Lys-peptide	N	MS	Gln	His	Val	Gly	Lys	Ala	Phe	Asn	Vidmar et al., 2017
Elongation factor 1-gamma	P26641		peptide-Phe70+Glu-peptide	N	MS	Phe	Cys	Val	Phe	Glu	Ser	Asn	Ala	Vidmar et al., 2017
Elongation factor 1-gamma	P26641		peptide-Arg181+Gln-peptide	N	MS	Pro	Ser	Phe	Arg	Gln	Ala	Phe	Pro	Vidmar et al., 2017
Elongation factor 1-gamma	P26641		peptide-Thr193+Cys-peptide	N	MS	Trp	Phe	Leu	Thr	Cys	Ile	Asn	Gln	Vidmar et al., 2017
Elongation factor 1-gamma	P26641		peptide-Gly41+Gln-peptide	N	MS	Phe	His	Phe	Gly	Gln	Thr	Asn	Arg	Vidmar et al., 2017
Elongation factor 2	P13639	634-647	Tyr-Leu-Ala636+Glu-Peptide	N	MS	-	Tyr	Leu	Ala	Glu	Lys	Tyr	Glu	Biniossek et al., 2011
Elongation factor 2	P13639	649-663	IIe-Trp-Cys651+Phe-Peptide	N	MS	-	Ile	Trp	Cys	Phe	Gly	Pro	Asp	Biniossek et al., 2011
Elongation factor 2	P13639	429-439	IIe-Met430+Gly-Peptide	N	MS	-	-	Ile	Met	Gly	Pro	Asn	Tyr	Biniossek et al., 2011
Elongation factor 2	P13639	560-571	Asp-Leu-Glu562+Glu-Peptide	N	MS	-	Asp	Leu	Glu	Glu	Asp	His	Ala	Biniossek et al., 2011
Elongation factor 2	P13639	608-625	Peptide-Ala614+Glu-Peptide	N	MS	Asp	Gly	Leu	Ala	Glu	Asp	Ile	Asp	Biniossek et al., 2011
Elongation factor 2	P13639		peptide-Arg341+Arg-peptide	N	MS	Ala	Val	Met	Arg	Arg	Trp	Leu	Pro	Vidmar et al., 2017
Elongation factor 2	P13639		peptide-Lys845+Glu-peptide	N	MS	Lys	Gly	Leu	Lys	Glu	Gly	Ile	Pro	Vidmar et al., 2017
Elongation factor Tu, mitochondrial	P49411	121-135	His-Tyr-Ala123+His-Peptide	N	MS	-	His	Tyr	Ala	His	Thr	Asp	Cys	Biniossek et al., 2011
Elongation factor Tu, mitochondrial	P49411	121-135	Peptide-Thr125+Asp-Peptide	N	MS	Tyr	Ala	His	Thr	Asp	Cys	Pro	Gly	Biniossek et al., 2011
Elongin-C	Q15369		peptide-Leu46+Ser-peptide	N	MS	Lys	Ala	Met	Leu	Ser	Gly	Pro	Gly	Vidmar et al., 2017
Endoplasmic reticulum resident protein 29	P30040		peptide-Gly32+Leu-peptide	N	MS	Gly	Gly	Ser	Gly	Leu	His	Thr	Lys	Vidmar et al., 2017
Endoplasmic reticulum resident protein 29	P30040		peptide-Gly92+Ile-peptide	N	MS	Ala	Glu	Val	Gly	Ile	Ser	Asp	Tyr	Vidmar et al., 2017
Enhancer of mRNA-decapping protein 4	Q6P2E9	551-570	Peptide-Gly559+Ser-Peptide	N	MS	Glu	Gly	Leu	Gly	Ser	Ala	Ala	His	Biniossek et al., 2011
Enhancer of mRNA-decapping protein 4	Q6P2E9	975-992	Peptide-Gln983+Ser-Peptide	N	MS	Glu	Gly	Leu	Gln	Ser	Thr	Val	Thr	Biniossek et al., 2011
Epididymal secretory protein E1	P61916		peptide-Met79+Gly-peptide	N	MS	Gly	Ile	Leu	Met	Gly	Val	Pro	Val	Vidmar et al., 2017
Epididymal secretory protein E1	P61916		peptide-Gly80+Val-peptide	N	MS	Ile	Leu	Met	Gly	Val	Pro	Val	Pro	Vidmar et al., 2017
Eukaryotic initiation factor 4A-I	P60842	296-309	Peptide-Ser300+Ala-Peptide	N	MS	Phe	Thr	Val	Ser	Ala	Met	His	Gly	Biniossek et al., 2011
Eukaryotic initiation factor 4A-I	P60842		peptide-Ser342+Leu-peptide	N	MS	Gln	Gln	Val	Ser	Leu	Val	Ile	Asn	Vidmar et al., 2017
Eukaryotic initiation factor 4A-I	P60842		peptide-Gln148+Met-peptide	N	MS	Gln	Lys	Leu	Gln	Met	Glu	Ala	Pro	Vidmar et al., 2017
Eukaryotic initiation factor 4A-I	P60842		peptide-Gly51+Phe-peptide	N	MS	Tyr	Ala	Tyr	Gly	Phe	Glu	Lys	Pro	Vidmar et al., 2017
Eukaryotic initiation factor 4A-I	P60842		peptide-Gln59+Gln-peptide	N	MS	Ser	Ala	Ile	Gln	Gln	Arg	Ala	Ile	Vidmar et al., 2017
Eukaryotic initiation factor 4A-III	P38919	298-314	Peptide-Ser305+Ser-Peptide	N	MS	Phe	Thr	Val	Ser	Ser	Met	His	Gly	Biniossek et al., 2011
Eukaryotic peptide chain release factor GTP-binding subunit ERF3B	Q8IYD1		peptide-His64+Ala-peptide	N	MS	Pro	Asn	Val	His	Ala	Ala	Glu	Phe	Vidmar et al., 2017
Eukaryotic translation initiation factor 2 subunit 1	P05198		peptide-Thr279+Asp-peptide	N	MS	Lys	Val	Val	Thr	Asp	Thr	Asp	Glu	Vidmar et al., 2017
Eukaryotic translation initiation factor 2 subunit 2	P20042	235-259	Peptide-Gly245+Thr-Peptide	N	MS	Ala	Glu	Leu	Gly	Thr	Ser	Gly	Ser	Biniossek et al., 2011
Eukaryotic translation initiation factor 2A	Q9BY44	521-536	Asn-Thr-Val-Ser524+Gln-Peptide	N	MS	Asn	Thr	Val	Ser	Gln	Ser	Ile	Ser	Biniossek et al., 2011
Eukaryotic translation initiation factor 3 subunit A	Q14152		peptide-Ser130+Ala-peptide	N	MS	Val	Leu	Leu	Ser	Ala	Val	Ser	Gly	Vidmar et al., 2017
Eukaryotic translation initiation factor 3 subunit A	Q14152		peptide-Lys689+Asn-peptide	N	MS	Glu	Arg	Leu	Lys	Asn	Gln	Glu	Lys	Vidmar et al., 2017
Eukaryotic translation initiation factor 3 subunit A	Q14152		peptide-Gly369+Leu-peptide	N	MS	Thr	Arg	Ile	Gly	Leu	Ile	Asn	Asp	Vidmar et al., 2017
Eukaryotic translation initiation factor 3 subunit A	Q14152		peptide-Ser328+Ile-peptide	N	MS	Ala	Thr	Leu	Ser	Ile	Pro	Ile	Thr	Vidmar et al., 2017
Eukaryotic translation initiation factor 3 subunit A	Q14152		peptide-Arg415+Glu-peptide	N	MS	Asn	Trp	Val	Arg	Glu	Gln	Pro	Glu	Vidmar et al., 2017
Eukaryotic translation initiation factor 3 subunit B	P55884		peptide-Ser125+Glu-peptide	N	MS	Gln	Ala	Val	Ser	Glu	Asp	Ala	Gly	Vidmar et al., 2017
Eukaryotic translation initiation factor 3 subunit B	P55884		peptide-Gly105+Glu-peptide	N	MS	Pro	Ala	Gln	Gly	Glu	Ala	Pro	Gly	Vidmar et al., 2017
Eukaryotic translation initiation factor 3 subunit C	Q99613	401-439	Peptide-Glu426+Glu-Peptide	N	MS	Asn	Ile	Leu	Glu	Glu	Ser	Glu	Asn	Biniossek et al., 2011
Eukaryotic translation initiation factor 3 subunit C	Q99613	458-474	IIe-Met-Gln460+Asn-Peptide	N	MS	-	Ile	Met	Gln	Asn	Thr	Asp	Pro	Biniossek et al., 2011
Eukaryotic translation initiation factor 3 subunit E	P60228		peptide-Lys93+Met-peptide	N	MS	Pro	Ile	Val	Lys	Met	Phe	Glu	Asp	Vidmar et al., 2017
Eukaryotic translation initiation factor 3 subunit F	O00303	318-353	Peptide-Thr344+Gln-Peptide	N	MS	Ala	Asn	Leu	Thr	Gln	Ser	Gln	Ile	Biniossek et al., 2011
Eukaryotic translation initiation factor 3 subunit F	O00303		peptide-Leu99+Ala-peptide	N	MS	Pro	Val	Ile	Leu	Ala	Ser	Ile	Val	Vidmar et al., 2017
Eukaryotic translation initiation factor 3 subunit F	O00303		peptide-Ala76+Leu-peptide	N	MS	Pro	Ala	Pro	Ala	Leu	Pro	Gly	Pro	Vidmar et al., 2017
Eukaryotic translation initiation factor 3 subunit F	O00303		peptide-Gln71+Thr-peptide	N	MS	Ala	Pro	Ala	Gln	Thr	Pro	Ala	Pro	Vidmar et al., 2017
Eukaryotic translation initiation factor 3 subunit G	O75821		peptide-Arg242+Val-peptide	N	MS	Ala	Thr	Ile	Arg	Val	Thr	Asn	Leu	Vidmar et al., 2017
Eukaryotic translation initiation factor 3 subunit G	O75821		peptide-Gly187+Leu-peptide	N	MS	Glu	Gln	Leu	Gly	Leu	Ser	Thr	Gly	Vidmar et al., 2017
Eukaryotic translation initiation factor 3 subunit H	O15372		peptide-Gln287+Arg-peptide	N	MS	Glu	Asn	Met	Gln	Arg	Gln	Ser	Arg	Vidmar et al., 2017
Eukaryotic translation initiation factor 3 subunit I	Q13347	214-224	Leu-Phe-Asp216+Ser-Peptide	N	MS	-	Leu	Phe	Asp	Ser	Thr	Thr	Leu	Biniossek et al., 2011
Eukaryotic translation initiation factor 3 subunit I	Q13347		peptide-Asn35+Val-peptide	N	MS	Pro	Ile	Val	Asn	Val	Trp	Tyr	Ser	Vidmar et al., 2017
Eukaryotic translation initiation factor 3 subunit I	Q13347		peptide-Arg310+Ile-peptide	N	MS	Gly	Tyr	Val	Arg	Ile	His	Tyr	Phe	Vidmar et al., 2017
Eukaryotic translation initiation factor 3 subunit K	Q9UBQ5		peptide-Thr75+Asn-peptide	N	MS	Lys	Ala	Leu	Thr	Asn	Leu	Pro	His	Vidmar et al., 2017
Eukaryotic translation initiation factor 3 subunit K	Q9UBQ5		peptide-Lys16+Gly-peptide	N	MS	Lys	Leu	Leu	Lys	Gly	Ile	Asp	Arg	Vidmar et al., 2017
Eukaryotic translation initiation factor 3 subunit M	Q7L2H7	184-201	Peptide-Leu189+Gly-Peptide	N	MS	Val	Glu	Leu	Leu	Gly	Ser	Tyr	Thr	Biniossek et al., 2011
Eukaryotic translation initiation factor 3 subunit M	Q7L2H7		peptide-Gln302+Ile-peptide	N	MS	Gln	Glu	Leu	Gln	Ile	Gly	Ala	Asp	Vidmar et al., 2017
Eukaryotic translation initiation factor 4 gamma 1	Q04637		peptide-Lys1234+Ala-peptide	N	MS	Ser	Pro	Leu	Lys	Ala	Ala	Leu	Ser	Vidmar et al., 2017
Eukaryotic translation initiation factor 4 gamma 1	Q04637		peptide-Gln67+Ser-peptide	N	MS	Ser	Arg	Val	Gln	Ser	Ala	Ala	Pro	Vidmar et al., 2017
Eukaryotic translation initiation factor 4 gamma 1	Q04637		peptide-Thr1070+Lys-peptide	N	MS	Ser	Arg	Leu	Thr	Lys	Ile	Thr	Lys	Vidmar et al., 2017
Eukaryotic translation initiation factor 4 gamma 1	Q04637		peptide-Ser1092+Trp-peptide	N	MS	Gly	Arg	Leu	Ser	Trp	Gly	Lys	Gly	Vidmar et al., 2017
Eukaryotic translation initiation factor 4 gamma 1	Q04637		peptide-Thr330+Leu-peptide	N	MS	Val	Glu	Val	Thr	Leu	Ser	Lys	Pro	Vidmar et al., 2017
Eukaryotic translation initiation factor 4 gamma 1	Q04637		peptide-Ser679+Thr-peptide	N	MS	Thr	Thr	Leu	Ser	Thr	Arg	Gly	Pro	Vidmar et al., 2017
Eukaryotic translation initiation factor 4 gamma 1	Q04637		peptide-Gln1127+Gln-peptide	N	MS	Ser	Ala	Leu	Gln	Gln	Ala	Val	Pro	Vidmar et al., 2017
Eukaryotic translation initiation factor 4 gamma 1	Q04637		peptide-Arg55+Ala-peptide	N	MS	Tyr	Pro	Ser	Arg	Ala	Gln	Pro	Pro	Vidmar et al., 2017
Eukaryotic translation initiation factor 4 gamma 1	Q04637		peptide-Asp414+Leu-peptide	N	MS	Pro	Ala	Val	Asp	Leu	Ser	Pro	Val	Vidmar et al., 2017
Eukaryotic translation initiation factor 4 gamma 1	Q04637		peptide-Leu641+Asp-peptide	N	MS	Asp	Val	Val	Leu	Asp	Lys	Ala	Asn	Vidmar et al., 2017
Eukaryotic translation initiation factor 4 gamma 1	Q04637		peptide-Ser419+Glu-peptide	N	MS	Ser	Pro	Val	Ser	Glu	Pro	Glu	Glu	Vidmar et al., 2017
Eukaryotic translation initiation factor 4 gamma 1	Q04637		peptide-Glu298+Glu-peptide	N	MS	Met	Ser	Val	Glu	Glu	Ser	Thr	Pro	Vidmar et al., 2017
Eukaryotic translation initiation factor 4H	Q15056		peptide-Cys85+Tyr-peptide	N	MS	Lys	Gly	Phe	Cys	Tyr	Val	Glu	Phe	Vidmar et al., 2017
Eukaryotic translation initiation factor 4H	Q15056		peptide-Tyr86+Val-peptide	N	MS	Gly	Phe	Cys	Tyr	Val	Glu	Phe	Asp	Vidmar et al., 2017
Eukaryotic translation initiation factor 4H	Q15056		peptide-Arg112+Val-peptide	N	MS	Arg	Ser	Leu	Arg	Val	Asp	Ile	Ala	Vidmar et al., 2017
Eukaryotic translation initiation factor 4H	Q15056		peptide-Asn52+Thr-peptide	N	MS	Leu	Pro	Phe	Asn	Thr	Val	Gln	Gly	Vidmar et al., 2017
Eukaryotic translation initiation factor 4H	Q15056		peptide-Gln55+Gly-peptide	N	MS	Asn	Thr	Val	Gln	Gly	Asp	Ile	Asp	Vidmar et al., 2017
Eukaryotic translation initiation factor 4H	Q15056		peptide-Arg191+Gly-peptide	N	MS	Pro	Pro	Leu	Arg	Gly	Ser	Asn	Met	Vidmar et al., 2017
Eukaryotic translation initiation factor 5	P55010	96-114	Phe-Val-Leu98+Cys-Peptide	N	MS	-	Phe	Val	Leu	Cys	Pro	Glu	Cys	Biniossek et al., 2011
Eukaryotic translation initiation factor 5A-1	P63241	127-150	Peptide-Thr142+Glu-Peptide	N	MS	Ser	Ala	Met	Thr	Glu	Glu	Ala	Ala	Biniossek et al., 2011
Eukaryotic translation initiation factor 5A-1-like	Q6IS14		peptide-Arg113+Leu-peptide	N	MS	Glu	Asp	Leu	Arg	Leu	Pro	Glu	Gly	Vidmar et al., 2017
Eukaryotic translation initiation factor 5A-1-like	Q6IS14		peptide-Gly60+Ile-peptide	N	MS	His	Leu	Val	Gly	Ile	Asp	Ile	Phe	Vidmar et al., 2017
Eukaryotic translation initiation factor 5A-1-like	Q6IS14		peptide-Glu124+Gln-peptide	N	MS	Lys	Glu	Ile	Glu	Gln	Lys	Tyr	Asp	Vidmar et al., 2017
Eukaryotic translation initiation factor 5A-1-like	Q6IS14		peptide-Arg26+Lys-peptide	N	MS	Ser	Ala	Leu	Arg	Lys	Asn	Gly	Phe	Vidmar et al., 2017
Eukaryotic translation initiation factor 5A-2	Q9GZV4	69-85	Tyr-Glu70+Asp-Peptide	N	MS	-	-	Tyr	Glu	Asp	Ile	Cys	Pro	Biniossek et al., 2011
Eukaryotic translation initiation factor 5A-2	Q9GZV4	69-85	Peptide-Ser75+Thr-Peptide	N	MS	Ile	Cys	Pro	Ser	Thr	His	Asn	Met	Biniossek et al., 2011
Eukaryotic translation initiation factor 5B	O60841	77-94	Glu-Thr-Val-Ala80+Val-Peptide	N	MS	Glu	Thr	Val	Ala	Val	Lys	Pro	Thr	Biniossek et al., 2011
Eukaryotic translation initiation factor 5B	O60841		peptide-Glu676+Ala-peptide	N	MS	Val	Pro	Leu	Glu	Ala	Ile	Asn	Glu	Vidmar et al., 2017
Eukaryotic translation initiation factor 6	P56537	140-164	Peptide-Phe154+Ser-Peptide	N	MS	Tyr	Cys	Val	Phe	Ser	Asn	Gln	Gly	Biniossek et al., 2011
Eukaryotic translation initiation factor 6	P56537	68-85	His-Gly-Leu-Leu71+Val-Peptide	N	MS	His	Gly	Leu	Leu	Val	Pro	Asn	Asn	Biniossek et al., 2011
Eukaryotic translation initiation factor 6	P56537		peptide-Ala115+Leu-peptide	N	MS	Asp	Tyr	Val	Ala	Leu	Val	His	Pro	Vidmar et al., 2017
Exportin-1	O14980	493-515	Peptide-Gly502+Ser-Peptide	N	MS	Trp	Ala	Ile	Gly	Ser	Ile	Ser	Gly	Biniossek et al., 2011
Exportin-2	P55060	190-206	Peptide-Cys195+Ser-Peptide	N	MS	Ile	Glu	Leu	Cys	Ser	Thr	His	Ala	Biniossek et al., 2011
Extended synaptotagmin-1	Q9BSJ8	423-445	Peptide-Gln436+Gly-Peptide	N	MS	Phe	Pro	Leu	Gln	Gly	Gly	Gln	Gly	Biniossek et al., 2011
F-actin-capping protein subunit alpha-1	P52907		peptide-Arg266+Thr-peptide	N	MS	Pro	Val	Thr	Arg	Thr	Lys	Ile	Asp	Vidmar et al., 2017
F-actin-capping protein subunit alpha-1	P52907		peptide-Asn30+Glu-peptide	N	MS	Gly	Glu	Phe	Asn	Glu	Val	Phe	Asn	Vidmar et al., 2017
F-actin-capping protein subunit beta	P47756		peptide-Arg72+Ser-peptide	N	MS	Asp	Ser	Tyr	Arg	Ser	Pro	Trp	Ser	Vidmar et al., 2017
F-actin-capping protein subunit beta	P47756		peptide-Arg14+Arg-peptide	N	MS	Asp	Leu	Met	Arg	Arg	Leu	Pro	Pro	Vidmar et al., 2017
F-box-like/WD repeat-containing protein TBL1X	O60907	407-419	Thr-Phe-Gln409+Gly-Peptide	N	MS	-	Thr	Phe	Gln	Gly	His	Thr	Asn	Biniossek et al., 2011
FACT complex subunit SPT16	Q9Y5B9		peptide-Ala482+Ala-peptide	N	MS	Lys	Glu	Leu	Ala	Ala	Gln	Leu	Asn	Vidmar et al., 2017
Far upstream element-binding protein 1	Q96AE4	219-236	Peptide-Gln223+Asp-Peptide	N	MS	Val	Met	Ile	Gln	Asp	Gly	Pro	Gln	Biniossek et al., 2011
Far upstream element-binding protein 2	Q92945	267-284	Peptide-Gln271+Asp-Peptide	N	MS	Ile	Leu	Ile	Gln	Asp	Gly	Ser	Gln	Biniossek et al., 2011
Far upstream element-binding protein 2	Q92945	629-645	IIe-Gly630+Gln-Peptide	N	MS	-	-	Ile	Gly	Gln	Gln	Pro	Gln	Biniossek et al., 2011
Far upstream element-binding protein 2	Q92945	123-142	Peptide-Ser131+Ser-Peptide	N	MS	Asp	Ser	Ile	Ser	Ser	Gln	Leu	Gly	Biniossek et al., 2011
Farnesyl pyrophosphate synthase	P14324		peptide-Lys353+Glu-peptide	N	MS	Gln	Ile	Leu	Lys	Glu	Asn	Tyr	Gly	Vidmar et al., 2017
Farnesyl pyrophosphate synthase	P14324		peptide-Gln342+Arg-peptide	N	MS	Gln	Cys	Leu	Gln	Arg	Ala	Thr	Pro	Vidmar et al., 2017
Fascin	Q16658	69-82	Tyr-Leu-Ala71+Ala-Peptide	N	MS	-	Tyr	Leu	Ala	Ala	Asp	Lys	Asp	Biniossek et al., 2011
Fatty acid synthase	P49327	1086-1098	Val-Thr-Val-Ala1089+Gly-Peptide	N	MS	Val	Thr	Val	Ala	Gly	Gly	Val	His	Biniossek et al., 2011
Fatty acid synthase	P49327	2355-2382	Peptide-Gln2373+Gln-Peptide	N	MS	Phe	Phe	Val	Gln	Gln	Phe	Thr	Asp	Biniossek et al., 2011
Fatty acid synthase	P49327	1471-1495	Peptide-Ser1478+Ser-Peptide	N	MS	Ser	Asn	Leu	Ser	Ser	Thr	Ser	His	Biniossek et al., 2011
Fatty acid synthase	P49327	2221-2233	Ser-Leu-Leu2223+Val-Peptide	N	MS	-	Ser	Leu	Leu	Val	Asn	Pro	Glu	Biniossek et al., 2011
Fatty acid synthase	P49327		peptide-Gly8+Met-peptide	N	MS	Val	Ile	Ala	Gly	Met	Ser	Gly	Lys	Vidmar et al., 2017
Fatty acid synthase	P49327		peptide-Gln483+Gln-peptide	N	MS	Pro	Glu	Val	Gln	Gln	Val	Pro	Ala	Vidmar et al., 2017
Fatty acid synthase	P49327		peptide-Ser714+Thr-peptide	N	MS	Arg	Trp	Leu	Ser	Thr	Ser	Ile	Pro	Vidmar et al., 2017
Fatty acid synthase	P49327		peptide-Thr262+Phe-peptide	N	MS	Gln	Gly	Val	Thr	Phe	Pro	Ser	Gly	Vidmar et al., 2017
Fatty acid synthase	P49327		peptide-Phe1414+Leu-peptide	N	MS	Ser	Pro	Ile	Phe	Leu	Pro	Val	Asp	Vidmar et al., 2017
Fatty acid synthase	P49327		peptide-Glu1010+Ala-peptide	N	MS	Gly	Ile	Leu	Glu	Ala	Ser	Leu	Glu	Vidmar et al., 2017
Fatty acid synthase	P49327		peptide-Thr1271+Ala-peptide	N	MS	Leu	Ser	Tyr	Thr	Ala	Thr	Asp	Arg	Vidmar et al., 2017
Fatty acid synthase	P49327		peptide-Gln278+Ser-peptide	N	MS	Ser	Leu	Tyr	Gln	Ser	Ala	Gly	Val	Vidmar et al., 2017
Fatty acid synthase	P49327		peptide-Leu191+Leu-peptide	N	MS	Ile	Asn	Val	Leu	Leu	Lys	Pro	Asn	Vidmar et al., 2017
Fatty acid synthase	P49327		peptide-Trp750+His-peptide	N	MS	Glu	Ala	Leu	Trp	His	Val	Pro	Glu	Vidmar et al., 2017
Fatty acid synthase	P49327		peptide-Ser10+Gly-peptide	N	MS	Ala	Gly	Met	Ser	Gly	Lys	Leu	Pro	Vidmar et al., 2017
Fatty acid synthase	P49327		peptide-Glu820+Phe-peptide	N	MS	Pro	Pro	Val	Glu	Phe	Pro	Ala	Pro	Vidmar et al., 2017
Fatty acid synthase	P49327		peptide-His358+Phe-peptide	N	MS	Pro	Asn	Leu	His	Phe	His	Ser	Pro	Vidmar et al., 2017
Fatty acid synthase	P49327		peptide-Ser1373+Gln-peptide	N	MS	Gly	Ile	Leu	Ser	Gln	Asp	Ala	Trp	Vidmar et al., 2017
Fatty acid synthase	P49327		peptide-Ala2211+Gln-peptide	N	MS	Asp	Gly	Leu	Ala	Gln	Gln	Gln	Thr	Vidmar et al., 2017
Fatty acid synthase	P49327		peptide-Gln2238+Ser-peptide	N	MS	Asn	Ser	Val	Gln	Ser	Ser	Glu	Arg	Vidmar et al., 2017
Fatty acid synthase	P49327		peptide-Met1159+Val-peptide	N	MS	Gly	Leu	Lys	Met	Val	Val	Pro	Gly	Vidmar et al., 2017
Fatty acid synthase	P49327		peptide-Lys1158+Met-peptide	N	MS	Gln	Gly	Leu	Lys	Met	Val	Val	Pro	Vidmar et al., 2017
Fatty acid synthase	P49327		peptide-Glu760+Ile-peptide	N	MS	Val	Val	Leu	Glu	Ile	Ala	Pro	His	Vidmar et al., 2017
Fatty acid synthase	P49327		peptide-Glu2491+Ser-peptide	N	MS	Ser	Gly	Leu	Glu	Ser	Ile	Ile	Ser	Vidmar et al., 2017
Fatty acid synthase	P49327		peptide-Phe969+Asp-peptide	N	MS	Pro	Arg	Leu	Phe	Asp	His	Pro	Glu	Vidmar et al., 2017
Fatty acid synthase	P49327		peptide-Ala1203+Gln-peptide	N	MS	Gln	Val	Leu	Ala	Gln	Glu	Arg	Pro	Vidmar et al., 2017
Fatty acid synthase	P49327		peptide-Gln375+Val-peptide	N	MS	Gly	Arg	Leu	Gln	Val	Val	Asp	Gln	Vidmar et al., 2017
Fatty acid-binding protein, epidermal	Q01469	83-103	Peptide-Gln96+His-Peptide	N	MS	Ala	Leu	Val	Gln	His	Gln	Glu	Trp	Biniossek et al., 2011
Ferrochelatase, mitochondrial	P22830	38-64	Peptide-Gly55+Ala-Peptide	N	MS	His	Ala	Gln	Gly	Ala	Lys	Pro	Gln	Biniossek et al., 2011
FH2 domain-containing protein 1	Q9C0D6	793-843	Peptide-Thr825+Ser-Peptide	N	MS	Ser	Asn	Pro	Thr	Ser	Ser	Pro	Pro	Biniossek et al., 2011
Filamin-A	P21333		peptide-Gln1484+Val-peptide	N	MS	Ala	Pro	Leu	Gln	Val	Lys	Val	Gln	Vidmar et al., 2017
Filamin-A	P21333		peptide-Thr2539+Lys-peptide	N	MS	Asp	Ser	Leu	Thr	Lys	Ala	Thr	Cys	Vidmar et al., 2017
Filamin-A	P21333		peptide-Gly2573+Gln-peptide	N	MS	Ala	Tyr	Val	Gly	Gln	Lys	Ser	Ser	Vidmar et al., 2017
Filamin-A	P21333		peptide-Met660+Ala-peptide	N	MS	Ser	Pro	Phe	Met	Ala	Asp	Ile	Arg	Vidmar et al., 2017
Filamin-A	P21333		peptide-Gly237+Ile-peptide	N	MS	Asp	Trp	Leu	Gly	Ile	Pro	Gln	Val	Vidmar et al., 2017
Filamin-A	P21333		peptide-Cys810+Ala-peptide	N	MS	Gly	Ile	Lys	Cys	Ala	Pro	Gly	Val	Vidmar et al., 2017
Filamin-A	P21333		peptide-Leu173+Gly-peptide	N	MS	Gln	Arg	Leu	Leu	Gly	Trp	Ile	Gln	Vidmar et al., 2017
Filamin-A	P21333		peptide-Lys2310+Phe-peptide	N	MS	Val	Ser	Val	Lys	Phe	Asn	Glu	Glu	Vidmar et al., 2017
Filamin-A	P21333		peptide-Gly1389+Leu-peptide	N	MS	Gly	Gly	Leu	Gly	Leu	Ala	Val	Glu	Vidmar et al., 2017
Filamin-A	P21333		peptide-Gly208+Leu-peptide	N	MS	Cys	Ala	Pro	Gly	Leu	Cys	Pro	Asp	Vidmar et al., 2017
Filamin-A	P21333		peptide-Tyr319+Val-peptide	N	MS	Val	Leu	Val	Tyr	Val	Glu	Asp	Pro	Vidmar et al., 2017
Filamin-A	P21333		peptide-Val815+Gly-peptide	N	MS	Pro	Gly	Val	Val	Gly	Pro	Ala	Glu	Vidmar et al., 2017
Filamin-A	P21333		peptide-Thr2486+Tyr-peptide	N	MS	Tyr	Arg	Val	Thr	Tyr	Thr	Pro	Met	Vidmar et al., 2017
Filamin-A	P21333		peptide-Thr1876+His-peptide	N	MS	Pro	Gly	Leu	Thr	His	Gly	Val	Val	Vidmar et al., 2017
Filamin-A	P21333		peptide-His1361+Gly-peptide	N	MS	Val	Arg	Val	His	Gly	Pro	Gly	Ile	Vidmar et al., 2017
Filamin-A	P21333		peptide-Gln240+Val-peptide	N	MS	Gly	Ile	Pro	Gln	Val	Ile	Thr	Pro	Vidmar et al., 2017
Filamin-A	P21333		peptide-Lys809+Cys-peptide	N	MS	Ile	Gly	Ile	Lys	Cys	Ala	Pro	Gly	Vidmar et al., 2017
Filamin-A	P21333		peptide-Ser2163+Leu-peptide	N	MS	Cys	Asp	Leu	Ser	Leu	Lys	Ile	Pro	Vidmar et al., 2017
Filamin-A	P21333		peptide-Arg1359+Val-peptide	N	MS	Ser	Arg	Val	Arg	Val	His	Gly	Pro	Vidmar et al., 2017
Filamin-A	P21333		peptide-Thr459+Phe-peptide	N	MS	Val	His	Val	Thr	Phe	Ala	Gly	Val	Vidmar et al., 2017
Filamin-A	P21333		peptide-Gly980+Glu-peptide	N	MS	Ser	Gly	Leu	Gly	Glu	Lys	Val	Asp	Vidmar et al., 2017
Filamin-A	P21333		peptide-Arg634+Tyr-peptide	N	MS	Cys	Asp	Val	Arg	Tyr	Trp	Pro	Gln	Vidmar et al., 2017
Filamin-A	P21333		peptide-Leu2591+Val-peptide	N	MS	Asn	Met	Leu	Leu	Val	Gly	Val	His	Vidmar et al., 2017
Filamin-A	P21333		peptide-Ser1921+Val-peptide	N	MS	Gly	Thr	Cys	Ser	Val	Ser	Tyr	Leu	Vidmar et al., 2017
Filamin-A	P21333		peptide-Ser1923+Tyr-peptide	N	MS	Cys	Ser	Val	Ser	Tyr	Leu	Pro	Val	Vidmar et al., 2017
Filamin-A	P21333		peptide-Tyr1924+Leu-peptide	N	MS	Ser	Val	Ser	Tyr	Leu	Pro	Val	Leu	Vidmar et al., 2017
Filamin-A	P21333		peptide-Lys1536+Val-peptide	N	MS	Ser	Pro	Phe	Lys	Val	Lys	Val	Leu	Vidmar et al., 2017
Filamin-A	P21333		peptide-Asp203+Ser-peptide	N	MS	Ala	Leu	Val	Asp	Ser	Cys	Ala	Pro	Vidmar et al., 2017
Filamin-A	P21333		peptide-Ser2356+Leu-peptide	N	MS	Phe	Ala	Val	Ser	Leu	Asn	Gly	Ala	Vidmar et al., 2017
Filamin-A	P21333		peptide-Gly2254+Val-peptide	N	MS	Ala	Glu	Ala	Gly	Val	Pro	Ala	Glu	Vidmar et al., 2017
Filamin-A	P21333		peptide-Met28+Pro-peptide	N	MS	Asp	Ala	Glu	Met	Pro	Ala	Thr	Glu	Vidmar et al., 2017
Filamin-A	P21333		peptide-Gly1025+Ala-peptide	N	MS	Pro	Gly	Leu	Gly	Ala	Asp	Asn	Ser	Vidmar et al., 2017
Filamin-A	P21333		peptide-Ser612+Val-peptide	N	MS	Leu	Gly	Phe	Ser	Val	Glu	Gly	Pro	Vidmar et al., 2017
Filamin-A	P21333		peptide-Gly2421+Glu-peptide	N	MS	Ile	Arg	Val	Gly	Glu	Pro	Gly	His	Vidmar et al., 2017
Filamin-A	P21333		peptide-Gly2548+Ala-peptide	N	MS	Pro	Gln	His	Gly	Ala	Pro	Gly	Pro	Vidmar et al., 2017
Filamin-A	P21333		peptide-Asn187+Phe-peptide	N	MS	Pro	Ile	Thr	Asn	Phe	Ser	Arg	Asp	Vidmar et al., 2017
Filamin-A	P21333		peptide-Lys1151+Ala-peptide	N	MS	Ser	Pro	Phe	Lys	Ala	His	Val	Val	Vidmar et al., 2017
Filamin-A	P21333		peptide-Arg1272+Glu-peptide	N	MS	Gly	Val	Phe	Arg	Glu	Ala	Thr	Thr	Vidmar et al., 2017
Filamin-A	P21333		peptide-Thr1377+Val-peptide	N	MS	Asn	Lys	Phe	Thr	Val	Glu	Thr	Arg	Vidmar et al., 2017
Filamin-A	P21333		peptide-Gln1769+Thr-peptide	N	MS	Gly	Gly	Gln	Gln	Thr	Trp	Ala	Pro	Vidmar et al., 2017
Filamin-A	P21333		peptide-Ser2308+Val-peptide	N	MS	Tyr	Glu	Val	Ser	Val	Lys	Phe	Asn	Vidmar et al., 2017
Filamin-A	P21333		peptide-Thr1984+Ala-peptide	N	MS	Ser	Leu	Leu	Thr	Ala	Thr	Val	Val	Vidmar et al., 2017
Filamin-A	P21333		peptide-Ala461+Gly-peptide	N	MS	Val	Thr	Phe	Ala	Gly	Val	Pro	Ile	Vidmar et al., 2017
Filamin-A	P21333		peptide-Lys1234+Tyr-peptide	N	MS	Val	Thr	Ile	Lys	Tyr	Gly	Gly	Gln	Vidmar et al., 2017
Filamin-A	P21333		peptide-Asp1792+Leu-peptide	N	MS	Arg	Pro	Phe	Asp	Leu	Val	Ile	Pro	Vidmar et al., 2017
Filamin-A	P21333		peptide-Gln712+Asp-peptide	N	MS	Val	Gln	Val	Gln	Asp	Asn	Glu	Gly	Vidmar et al., 2017
Filamin-A	P21333		peptide-Gln1078+Gly-peptide	N	MS	Pro	Gly	Leu	Gln	Gly	Gly	Ser	Ala	Vidmar et al., 2017
Filamin-A	P21333		peptide-Gln2477+Glu-peptide	N	MS	Met	Asp	Cys	Gln	Glu	Cys	Pro	Glu	Vidmar et al., 2017
Filamin-A	P21333		peptide-Asn1510+Tyr-peptide	N	MS	Gln	Thr	Val	Asn	Tyr	Val	Pro	Ser	Vidmar et al., 2017
Filamin-A	P21333		peptide-Gln1857+Phe-peptide	N	MS	Ser	Pro	Leu	Gln	Phe	Tyr	Val	Asp	Vidmar et al., 2017
Filamin-A	P21333		peptide-Gly592+Lys-peptide	N	MS	Gly	Val	Val	Gly	Lys	Ser	Ala	Asp	Vidmar et al., 2017
Filamin-A	P21333		peptide-Ala1742+Gly-peptide	N	MS	Thr	Ala	Leu	Ala	Gly	Asp	Gln	Pro	Vidmar et al., 2017
Filamin-A	P21333		peptide-Ser753+Ile-peptide	N	MS	Gly	Gly	Val	Ser	Ile	Pro	Asn	Ser	Vidmar et al., 2017
Filamin-A	P21333		peptide-Gly2008+Ile-peptide	N	MS	Gly	His	Val	Gly	Ile	Ser	Phe	Val	Vidmar et al., 2017
Filamin-A	P21333		peptide-Asp970+Leu-peptide	N	MS	Pro	Ser	Leu	Asp	Leu	Ser	Lys	Ile	Vidmar et al., 2017
Filamin-A	P21333		peptide-Gln710+Val-peptide	N	MS	Leu	Arg	Val	Gln	Val	Gln	Asp	Asn	Vidmar et al., 2017
Filamin-A	P21333		peptide-Lys2631+Trp-peptide	N	MS	Leu	Val	Val	Lys	Trp	Gly	Asp	Glu	Vidmar et al., 2017
Filamin-A	P21333		peptide-Thr1770+Trp-peptide	N	MS	Gly	Gln	Gln	Thr	Trp	Ala	Pro	Glu	Vidmar et al., 2017
Filamin-A	P21333		peptide-Lys837+Tyr-peptide	N	MS	Phe	Thr	Val	Lys	Tyr	Thr	Pro	Arg	Vidmar et al., 2017
Filamin-A	P21333		peptide-Thr2179+Ser-peptide	N	MS	Ala	Gln	Val	Thr	Ser	Pro	Ser	Gly	Vidmar et al., 2017
Filamin-A	P21333		peptide-Gly462+Val-peptide	N	MS	Thr	Phe	Ala	Gly	Val	Pro	Ile	Pro	Vidmar et al., 2017
Filamin-A	P21333		peptide-Gly610+Phe-peptide	N	MS	Gly	Thr	Leu	Gly	Phe	Ser	Val	Glu	Vidmar et al., 2017
Filamin-A	P21333		peptide-Arg708+Val-peptide	N	MS	Ala	Pro	Leu	Arg	Val	Gln	Val	Gln	Vidmar et al., 2017
Filamin-A	P21333		peptide-Thr950+Tyr-peptide	N	MS	Val	Asn	Val	Thr	Tyr	Gly	Gly	Asp	Vidmar et al., 2017
Filamin-A	P21333		peptide-Ala1816+Gln-peptide	N	MS	Gly	Lys	Val	Ala	Gln	Pro	Thr	Ile	Vidmar et al., 2017
Filamin-A	P21333		peptide-Ser189+Arg-peptide	N	MS	Thr	Asn	Phe	Ser	Arg	Asp	Trp	Gln	Vidmar et al., 2017
Filamin-A	P21333		peptide-Gln1310+Asp-peptide	N	MS	Thr	Tyr	Val	Gln	Asp	Arg	Gly	Asp	Vidmar et al., 2017
Filamin-A	P21333		peptide-Arg1725+Phe-peptide	N	MS	Ile	Cys	Val	Arg	Phe	Gly	Gly	Glu	Vidmar et al., 2017
Filamin-A	P21333		peptide-Ala2326+Ser-peptide	N	MS	Val	Pro	Val	Ala	Ser	Pro	Ser	Gly	Vidmar et al., 2017
Filamin-A	P21333		peptide-Phe1140+Ala-peptide	N	MS	Asn	Ile	Leu	Phe	Ala	Asp	Thr	His	Vidmar et al., 2017
Filamin-A	P21333		peptide-Thr1887+Val-peptide	N	MS	Ala	Thr	Phe	Thr	Val	Asn	Thr	Lys	Vidmar et al., 2017
Filamin-A	P21333		peptide-Glu2252+Ala-peptide	N	MS	Glu	Arg	Ala	Glu	Ala	Gly	Val	Pro	Vidmar et al., 2017
Filamin-A	P21333		peptide-Lys785+Ala-peptide	N	MS	Thr	Gly	Leu	Lys	Ala	His	Glu	Pro	Vidmar et al., 2017
Filamin-A	P21333		peptide-Arg1032+Phe-peptide	N	MS	Ser	Val	Val	Arg	Phe	Leu	Pro	Arg	Vidmar et al., 2017
Filamin-A	P21333		peptide-Tyr775+Gly-peptide	N	MS	Val	Lys	Val	Tyr	Gly	Pro	Gly	Val	Vidmar et al., 2017
Filamin-A	P21333		peptide-Arg2242+Ala-peptide	N	MS	His	Lys	Val	Arg	Ala	Gly	Gly	Pro	Vidmar et al., 2017
Filamin-A	P21333		peptide-Ala1005+Ser-peptide	N	MS	Gly	Lys	Val	Ala	Ser	Lys	Ile	Val	Vidmar et al., 2017
Filamin-A	P21333		peptide-Thr1798+Ile-peptide	N	MS	Ile	Pro	Phe	Thr	Ile	Lys	Lys	Gly	Vidmar et al., 2017
Filamin-A	P21333		peptide-Ser2463+Val-peptide	N	MS	Gly	Ala	Leu	Ser	Val	Thr	Ile	Asp	Vidmar et al., 2017
Filamin-A	P21333		peptide-Gly1779+Val-peptide	N	MS	Pro	Leu	Val	Gly	Val	Asn	Gly	Leu	Vidmar et al., 2017
Filamin-A	P21333		peptide-Ala1141+Asp-peptide	N	MS	Ile	Leu	Phe	Ala	Asp	Thr	His	Ile	Vidmar et al., 2017
Filamin-A	P21333		peptide-Gly425+Gln-peptide	N	MS	Asp	Pro	Met	Gly	Gln	Lys	Gly	Thr	Vidmar et al., 2017
Filamin-A	P21333		peptide-Ala688+Val-peptide	N	MS	Thr	Gly	Val	Ala	Val	Asn	Lys	Pro	Vidmar et al., 2017
Filamin-A	P21333		peptide-Arg1831+Tyr-peptide	N	MS	Val	Thr	Val	Arg	Tyr	Ala	Pro	Ser	Vidmar et al., 2017
Filamin-A	P21333		peptide-Gln1472+Val-peptide	N	MS	Gln	Ser	Phe	Gln	Val	Asp	Thr	Ser	Vidmar et al., 2017
Filamin-A	P21333		peptide-Gln182+Leu-peptide	N	MS	Lys	Leu	Pro	Gln	Leu	Pro	Ile	Thr	Vidmar et al., 2017
Filamin-A	P21333		peptide-Ala853+Asp-peptide	N	MS	Val	Leu	Phe	Ala	Asp	Gln	Ala	Thr	Vidmar et al., 2017
Filamin-A	P21333		peptide-Arg921+Asp-peptide	N	MS	Asp	Ala	Val	Arg	Asp	Val	Asp	Ile	Vidmar et al., 2017
Filamin-A	P21333		peptide-Lys1937+Tyr-peptide	N	MS	Ile	Leu	Val	Lys	Tyr	Asn	Glu	Gln	Vidmar et al., 2017
Filamin-A	P21333		peptide-Lys1452+Cys-peptide	N	MS	Ser	Lys	Val	Lys	Cys	Ser	Gly	Pro	Vidmar et al., 2017
Filamin-A	P21333		peptide-Ile242+Thr-peptide	N	MS	Pro	Gln	Val	Ile	Thr	Pro	Glu	Glu	Vidmar et al., 2017
Filamin-A	P21333		peptide-Lys2621+Asp-peptide	N	MS	Tyr	Leu	Leu	Lys	Asp	Lys	Gly	Glu	Vidmar et al., 2017
Filamin-A	P21333		peptide-Asn1881+Lys-peptide	N	MS	Gly	Val	Val	Asn	Lys	Pro	Ala	Thr	Vidmar et al., 2017
Filamin-A	P21333		peptide-Lys58+Cys-peptide	N	MS	Glu	His	Leu	Lys	Cys	Val	Ser	Lys	Vidmar et al., 2017
Filamin-A	P21333		peptide-Lys1621+Tyr-peptide	N	MS	Ile	Leu	Ile	Lys	Tyr	Gly	Gly	Asp	Vidmar et al., 2017
Filamin-A	P21333		peptide-Leu1139+Phe-peptide	N	MS	Ile	Asn	Ile	Leu	Phe	Ala	Asp	Thr	Vidmar et al., 2017
Filamin-A	P21333		peptide-Thr1762+Tyr-peptide	N	MS	Pro	Gln	Tyr	Thr	Tyr	Ala	Gln	Gly	Vidmar et al., 2017
Filamin-A	P21333		peptide-Arg664+Asp-peptide	N	MS	Ala	Asp	Ile	Arg	Asp	Ala	Pro	Gln	Vidmar et al., 2017
Filamin-A	P21333		peptide-Lys1439+Val-peptide	N	MS	Ser	Pro	Phe	Lys	Val	Pro	Val	His	Vidmar et al., 2017
Filamin-A	P21333		peptide-Thr1427+Tyr-peptide	N	MS	Leu	Asn	Val	Thr	Tyr	Gly	Gly	His	Vidmar et al., 2017
Filamin-A	P21333		peptide-Gln1259+Cys-peptide	N	MS	Ser	Gly	Val	Gln	Cys	Tyr	Gly	Pro	Vidmar et al., 2017
Filamin-A	P21333		peptide-Thr1739+Ala-peptide	N	MS	Phe	Gln	Val	Thr	Ala	Leu	Ala	Gly	Vidmar et al., 2017
Filamin-A	P21333		peptide-Leu851+Phe-peptide	N	MS	Ile	Met	Val	Leu	Phe	Ala	Asp	Gln	Vidmar et al., 2017
Filamin-A	P21333		peptide-Leu1524+Tyr-peptide	N	MS	Ile	Ser	Val	Leu	Tyr	Gly	Asp	Glu	Vidmar et al., 2017
Filamin-B	O75369		peptide-Lys1508+Val-peptide	N	MS	Ser	Pro	Phe	Lys	Val	Lys	Val	Leu	Vidmar et al., 2017
Filamin-B	O75369		peptide-Glu957+Val-peptide	N	MS	Asn	Arg	Val	Glu	Val	Gly	Lys	Asp	Vidmar et al., 2017
Filamin-B	O75369		peptide-Ser2036+Leu-peptide	N	MS	Gly	Gly	Ile	Ser	Leu	Ala	Val	Glu	Vidmar et al., 2017
Filamin-B	O75369		peptide-Gly210+Val-peptide	N	MS	Asp	Trp	Leu	Gly	Val	Pro	Gln	Val	Vidmar et al., 2017
Filamin-B	O75369		peptide-Glu2204+Arg-peptide	N	MS	Pro	Gly	Leu	Glu	Arg	Gly	Glu	Ala	Vidmar et al., 2017
Filamin-B	O75369		peptide-Asp176+Ser-peptide	N	MS	Ala	Leu	Val	Asp	Ser	Cys	Ala	Pro	Vidmar et al., 2017
Filamin-B	O75369		peptide-Gly1972+Glu-peptide	N	MS	Arg	Glu	Val	Gly	Glu	His	Leu	Val	Vidmar et al., 2017
Filamin-B	O75369		peptide-Asp1855+Leu-peptide	N	MS	Gly	Gly	Leu	Asp	Leu	Ala	Ile	Glu	Vidmar et al., 2017
Filamin-B	O75369		peptide-Thr216+Pro-peptide	N	MS	Gln	Val	Ile	Thr	Pro	Glu	Glu	Ile	Vidmar et al., 2017
Filamin-B	O75369		peptide-Ser1535+Leu-peptide	N	MS	Val	Pro	Ala	Ser	Leu	Pro	Val	Asp	Vidmar et al., 2017
Filamin-B	O75369		peptide-Glu2207+Ala-peptide	N	MS	Glu	Arg	Gly	Glu	Ala	Gly	Val	Pro	Vidmar et al., 2017
Filamin-B	O75369		peptide-Lys746+Val-peptide	N	MS	Gln	Lys	Val	Lys	Val	Phe	Gly	Pro	Vidmar et al., 2017
Filamin-B	O75369		peptide-Thr1205+Met-peptide	N	MS	Tyr	Thr	Leu	Thr	Met	Lys	Tyr	Gly	Vidmar et al., 2017
Filamin-B	O75369		peptide-Glu1293+Tyr-peptide	N	MS	Tyr	Gln	Val	Glu	Tyr	Thr	Pro	Phe	Vidmar et al., 2017
Filamin-B	O75369		peptide-Asn2118+Leu-peptide	N	MS	Cys	Asp	Leu	Asn	Leu	Lys	Ile	Pro	Vidmar et al., 2017
Filamin-B	O75369		peptide-Gln1996+Ser-peptide	N	MS	Met	Val	Val	Gln	Ser	Glu	Ile	Gly	Vidmar et al., 2017
Filamin-B	O75369		peptide-Asn162+Gln-peptide	N	MS	Thr	Asn	Phe	Asn	Gln	Asn	Trp	Gln	Vidmar et al., 2017
Filamin-B	O75369		peptide-Lys1496+Tyr-peptide	N	MS	Val	Ser	Val	Lys	Tyr	Ala	Asp	Glu	Vidmar et al., 2017
Filamin-B	O75369		peptide-Lys1510+Val-peptide	N	MS	Phe	Lys	Val	Lys	Val	Leu	Pro	Thr	Vidmar et al., 2017
Filamin-B	O75369		peptide-Thr528+Trp-peptide	N	MS	Ile	Ala	Ile	Thr	Trp	Gly	Gly	His	Vidmar et al., 2017
Filamin-B	O75369		peptide-Leu788+Ser-peptide	N	MS	Ala	Arg	Val	Leu	Ser	Glu	Asp	Glu	Vidmar et al., 2017
Filamin-B	O75369		peptide-Arg2197+Ala-peptide	N	MS	His	Lys	Val	Arg	Ala	Gly	Gly	Pro	Vidmar et al., 2017
Filamin-B	O75369		peptide-Ser1384+Ala-peptide	N	MS	Gly	Ser	Cys	Ser	Ala	Glu	Tyr	Ile	Vidmar et al., 2017
Filamin-B	O75369		peptide-Leu1460+Gly-peptide	N	MS	Val	Arg	Val	Leu	Gly	Pro	Arg	Gly	Vidmar et al., 2017
Filamin-B	O75369		peptide-Gln542+Val-peptide	N	MS	Phe	Glu	Val	Gln	Val	Gly	Pro	Glu	Vidmar et al., 2017
Filamin-B	O75369		peptide-Glu2019+Met-peptide	N	MS	Arg	Thr	Phe	Glu	Met	Ser	Asp	Phe	Vidmar et al., 2017
Filamin-B	O75369		peptide-Lys1207+Tyr-peptide	N	MS	Leu	Thr	Met	Lys	Tyr	Gly	Gly	Glu	Vidmar et al., 2017
Filamin-B	O75369		peptide-Glu1033+Ala-peptide	N	MS	Tyr	Thr	Val	Glu	Ala	Ser	Leu	Pro	Vidmar et al., 2017
Filamin-B	O75369		peptide-Thr1879+Tyr-peptide	N	MS	Cys	Thr	Val	Thr	Tyr	Leu	Pro	Thr	Vidmar et al., 2017
Filamin-B	O75369		peptide-Met2441+Tyr-peptide	N	MS	Tyr	Lys	Val	Met	Tyr	Thr	Pro	Met	Vidmar et al., 2017
Filamin-B	O75369		peptide-Glu656+Lys-peptide	N	MS	Pro	Gly	Leu	Glu	Lys	Ser	Gly	Cys	Vidmar et al., 2017
Filamin-B	O75369		peptide-Ser2215+Ile-peptide	N	MS	Ala	Glu	Phe	Ser	Ile	Trp	Thr	Arg	Vidmar et al., 2017
Filamin-B	O75369		peptide-Gln883+Phe-peptide	N	MS	Leu	Asn	Val	Gln	Phe	Asn	Ser	Pro	Vidmar et al., 2017
Filamin-B	O75369		peptide-Thr1019+Tyr-peptide	N	MS	Val	Asp	Val	Thr	Tyr	Asp	Gly	His	Vidmar et al., 2017
Filamin-B	O75369		peptide-Lys810+Tyr-peptide	N	MS	Phe	Thr	Val	Lys	Tyr	Val	Pro	Pro	Vidmar et al., 2017
Filamin-B	O75369		peptide-Leu992+Val-peptide	N	MS	Val	Pro	Cys	Leu	Val	Thr	Pro	Val	Vidmar et al., 2017
Filamin-B	O75369		peptide-Gly2528+Gln-peptide	N	MS	Ala	Phe	Val	Gly	Gln	Lys	Ser	Ser	Vidmar et al., 2017
Filamin-B	O75369		peptide-Leu146+Gly-peptide	N	MS	Gln	Arg	Leu	Leu	Gly	Trp	Ile	Gln	Vidmar et al., 2017
Filamin-B	O75369		peptide-Ala371+Asn-peptide	N	MS	Gly	Asn	Ile	Ala	Asn	Lys	Pro	Thr	Vidmar et al., 2017
Filamin-B	O75369		peptide-Gln2402+Ser-peptide	N	MS	Thr	Gly	Ile	Gln	Ser	Glu	Phe	Phe	Vidmar et al., 2017
Filamin-B	O75369		peptide-Asn2125+Ser-peptide	N	MS	Pro	Glu	Ile	Asn	Ser	Ser	Asp	Met	Vidmar et al., 2017
Filamin-B	O75369		peptide-Leu2546+Ile-peptide	N	MS	Asn	Met	Leu	Leu	Ile	Gly	Val	His	Vidmar et al., 2017
Filamin-B	O75369		peptide-Thr1062+Ile-peptide	N	MS	Ala	Glu	Phe	Thr	Ile	Asp	Thr	Lys	Vidmar et al., 2017
Filamin-B	O75369		peptide-Ala1619+Thr-peptide	N	MS	Lys	Cys	Leu	Ala	Thr	Gly	Pro	Gly	Vidmar et al., 2017
Filamin-B	O75369		peptide-Arg1607+Ala-peptide	N	MS	Tyr	Arg	Ile	Arg	Ala	Thr	Gln	Thr	Vidmar et al., 2017
Filamin-B	O75369		peptide-Thr997+Gly-peptide	N	MS	Thr	Pro	Val	Thr	Gly	Arg	Glu	Asn	Vidmar et al., 2017
Filamin-B	O75369		peptide-Gln150+Asn-peptide	N	MS	Gly	Trp	Ile	Gln	Asn	Lys	Ile	Pro	Vidmar et al., 2017
Filamin-B	O75369		peptide-Lys2468+Ala-peptide	N	MS	Ser	Pro	Phe	Lys	Ala	Lys	Val	Thr	Vidmar et al., 2017
Filamin-B	O75369		peptide-Phe432+Ala-peptide	N	MS	Lys	Ile	Phe	Phe	Ala	Gly	Asp	Thr	Vidmar et al., 2017
Filamin-B	O75369		peptide-Phe825+Ala-peptide	N	MS	Lys	Val	Leu	Phe	Ala	Ser	Gln	Glu	Vidmar et al., 2017
Filamin-B	O75369		peptide-Glu2040+Gly-peptide	N	MS	Leu	Ala	Val	Glu	Gly	Pro	Ser	Lys	Vidmar et al., 2017
Filamin-B	O75369		peptide-Gly147+Trp-peptide	N	MS	Arg	Leu	Leu	Gly	Trp	Ile	Gln	Asn	Vidmar et al., 2017
Filamin-B	O75369		peptide-Lys1416+Asp-peptide	N	MS	Val	Pro	Val	Lys	Asp	Val	Val	Asp	Vidmar et al., 2017
Filamin-B	O75369		peptide-Thr923+Tyr-peptide	N	MS	Val	Leu	Val	Thr	Tyr	Gly	Gly	Asp	Vidmar et al., 2017
Filamin-B	O75369		peptide-Thr2141+Glu-peptide	N	MS	Gly	Arg	Val	Thr	Glu	Ala	Glu	Ile	Vidmar et al., 2017
Filamin-B	O75369		peptide-Glu392+Val-peptide	N	MS	Ile	Gly	Val	Glu	Val	Glu	Asp	Pro	Vidmar et al., 2017
Filamin-B	O75369		peptide-Lys712+Ala-peptide	N	MS	Thr	Pro	Val	Lys	Ala	Ile	Lys	His	Vidmar et al., 2017
Filamin-B	O75369		peptide-Glu2261+Val-peptide	N	MS	Gly	Asn	Tyr	Glu	Val	Ser	Ile	Lys	Vidmar et al., 2017
Filamin-B	O75369		peptide-Gln445+Val-peptide	N	MS	Phe	Val	Val	Gln	Val	Gly	Glu	Ala	Vidmar et al., 2017
Filamin-B	O75369		peptide-Thr872+Lys-peptide	N	MS	Thr	Val	Tyr	Thr	Lys	Gly	Ala	Gly	Vidmar et al., 2017
Filamin-B	O75369		peptide-Thr1444+Val-peptide	N	MS	Gln	Ser	Phe	Thr	Val	Asp	Ser	Ser	Vidmar et al., 2017
Filamin-B	O75369		peptide-Glu1128+Met-peptide	N	MS	Ala	Asp	Ile	Glu	Met	Pro	Phe	Asp	Vidmar et al., 2017
Filamin-B	O75369		peptide-Gly2209+Val-peptide	N	MS	Gly	Glu	Ala	Gly	Val	Pro	Ala	Glu	Vidmar et al., 2017
Filamin-B	O75369		peptide-Cys622+Asp-peptide	N	MS	His	Ile	Met	Cys	Asp	Asp	Glu	Asp	Vidmar et al., 2017
Filamin-B	O75369		peptide-Lys502+Gln-peptide	N	MS	Glu	Leu	Val	Lys	Gln	Lys	Asp	Phe	Vidmar et al., 2017
Filamin-B	O75369		peptide-Asp1539+Phe-peptide	N	MS	Leu	Pro	Val	Asp	Phe	Ala	Ile	Asp	Vidmar et al., 2017
Filamin-B	O75369		peptide-Thr23+Arg-peptide	N	MS	Asn	Thr	Phe	Thr	Arg	Trp	Cys	Asn	Vidmar et al., 2017
Filamin-B	O75369		peptide-Glu514+Tyr-peptide	N	MS	Tyr	Ala	Phe	Glu	Tyr	Tyr	Pro	Ser	Vidmar et al., 2017
Filamin-B	O75369		peptide-Gly2368+Ser-peptide	N	MS	His	Val	Val	Gly	Ser	Pro	Phe	Lys	Vidmar et al., 2017
Filamin-B	O75369		peptide-Ile2281+Ala-peptide	N	MS	Val	Pro	Val	Ile	Ala	Pro	Ser	Asp	Vidmar et al., 2017
Filamin-B	O75369		peptide-Ile215+Thr-peptide	N	MS	Pro	Gln	Val	Ile	Thr	Pro	Glu	Glu	Vidmar et al., 2017
Filamin-B	O75369		peptide-Trp722+Gly-peptide	N	MS	Ala	Val	Val	Trp	Gly	Gly	Val	Asn	Vidmar et al., 2017
Filamin-B	O75369		peptide-Gly1963+Ile-peptide	N	MS	Asn	His	Ile	Gly	Ile	Ser	Phe	Ile	Vidmar et al., 2017
Filamin-B	O75369		peptide-Thr1343+Asn-peptide	N	MS	Glu	Ala	Phe	Thr	Asn	Lys	Pro	Asn	Vidmar et al., 2017
Filamin-B	O75369		peptide-Gly387+Asp-peptide	N	MS	Ala	Gly	Val	Gly	Asp	Ile	Gly	Val	Vidmar et al., 2017
Filamin-B	O75369		peptide-Thr669+Val-peptide	N	MS	Ala	Glu	Phe	Thr	Val	Asp	Pro	Lys	Vidmar et al., 2017
Filamin-B	O75369		peptide-Thr1883+Leu-peptide	N	MS	Tyr	Leu	Pro	Thr	Leu	Pro	Gly	Asp	Vidmar et al., 2017
Filamin-B	O75369		peptide-Ala1138+Ser-peptide	N	MS	Lys	Val	Val	Ala	Ser	Gly	Pro	Gly	Vidmar et al., 2017
Filamin-B	O75369		peptide-Ser2263+Ile-peptide	N	MS	Tyr	Glu	Val	Ser	Ile	Lys	Phe	Asn	Vidmar et al., 2017
Filamin-B	O75369		peptide-Gly1804+Ser-peptide	N	MS	Lys	Tyr	Met	Gly	Ser	His	Ile	Pro	Vidmar et al., 2017
Filamin-B	O75369		peptide-Thr1593+Tyr-peptide	N	MS	Ile	Gly	Val	Thr	Tyr	Gly	Gly	Asp	Vidmar et al., 2017
Filamin-B	O75369		peptide-Thr159+Asn-peptide	N	MS	Leu	Pro	Ile	Thr	Asn	Phe	Asn	Gln	Vidmar et al., 2017
Filamin-B	O75369		peptide-Met633+Ala-peptide	N	MS	Ser	Pro	Tyr	Met	Ala	Phe	Ile	His	Vidmar et al., 2017
Filamin-B	O75369		peptide-Val993+Thr-peptide	N	MS	Pro	Cys	Leu	Val	Thr	Pro	Val	Thr	Vidmar et al., 2017
Filamin-B	O75369		peptide-Ala2208+Gly-peptide	N	MS	Arg	Gly	Glu	Ala	Gly	Val	Pro	Ala	Vidmar et al., 2017
Filamin-B	O75369		peptide-Gly1402+Gly-peptide	N	MS	Ile	Thr	Tyr	Gly	Gly	Ala	His	Ile	Vidmar et al., 2017
Filamin-B	O75369		peptide-Tyr1833+Gly-peptide	N	MS	Gly	Leu	Val	Tyr	Gly	Val	Ala	Asn	Vidmar et al., 2017
Filamin-B	O75369		peptide-His1765+Met-peptide	N	MS	Gly	Glu	Val	His	Met	Pro	Ser	Gly	Vidmar et al., 2017
Filamin-B	O75369		peptide-Gly583+Phe-peptide	N	MS	Gly	Ser	Leu	Gly	Phe	Ala	Ile	Glu	Vidmar et al., 2017
Filamin-B	O75369		peptide-Thr1400+Tyr-peptide	N	MS	Val	Asn	Ile	Thr	Tyr	Gly	Gly	Ala	Vidmar et al., 2017
Filamin-B	O75369		peptide-Asn885+Ser-peptide	N	MS	Val	Gln	Phe	Asn	Ser	Pro	Leu	Pro	Vidmar et al., 2017
Filamin-B	O75369		peptide-Thr1579+Tyr-peptide	N	MS	Tyr	Ala	Val	Thr	Tyr	Ile	Pro	Asp	Vidmar et al., 2017
Filamin-B	O75369		peptide-Gln41+Thr-peptide	N	MS	Gly	Asn	Leu	Gln	Thr	Asp	Leu	Ser	Vidmar et al., 2017
Filamin-B	O75369		peptide-Lys2096+Glu-peptide	N	MS	Gly	Arg	Val	Lys	Glu	Ser	Ile	Thr	Vidmar et al., 2017
Filamin-B	O75369		peptide-Ala939+Ala-peptide	N	MS	Val	Gly	Val	Ala	Ala	Pro	Leu	Asp	Vidmar et al., 2017
Filamin-B	O75369		peptide-Lys1893+Tyr-peptide	N	MS	Ile	Leu	Val	Lys	Tyr	Asn	Asp	Lys	Vidmar et al., 2017
Filamin-B	O75369		peptide-Leu824+Phe-peptide	N	MS	Ile	Lys	Val	Leu	Phe	Ala	Ser	Gln	Vidmar et al., 2017
Filamin-B	O75369		peptide-Val1466+Glu-peptide	N	MS	Arg	Gly	Leu	Val	Glu	Pro	Val	Asn	Vidmar et al., 2017
Filamin-B	O75369		peptide-Lys1221+Val-peptide	N	MS	Ala	Arg	Val	Lys	Val	Glu	Pro	Ala	Vidmar et al., 2017
Filamin-B	O75369		peptide-Gly641+Gly-peptide	N	MS	Pro	Ala	Thr	Gly	Gly	Tyr	Asn	Pro	Vidmar et al., 2017
Filamin-B	O75369		peptide-Gly261+Arg-peptide	N	MS	Arg	Ala	Tyr	Gly	Arg	Gly	Ile	Glu	Vidmar et al., 2017
Filamin-B	O75369		peptide-Glu344+Val-peptide	N	MS	Ser	Pro	Phe	Glu	Val	Ser	Val	Asp	Vidmar et al., 2017
Filamin-B	O75369		peptide-Ser2072+Thr-peptide	N	MS	Tyr	Ile	Val	Ser	Thr	Lys	Phe	Ala	Vidmar et al., 2017
Filamin-B	O75369		peptide-Ala634+Phe-peptide	N	MS	Pro	Tyr	Met	Ala	Phe	Ile	His	Pro	Vidmar et al., 2017
Filamin-B	O75369		peptide-Lys2120+Ile-peptide	N	MS	Leu	Asn	Leu	Lys	Ile	Pro	Glu	Ile	Vidmar et al., 2017
Filamin-B	O75369		peptide-Glu1305+Val-peptide	N	MS	His	Val	Val	Glu	Val	Thr	Tyr	Asp	Vidmar et al., 2017
Filamin-B	O75369		peptide-Asp1748+Leu-peptide	N	MS	Lys	Pro	Phe	Asp	Leu	Val	Ile	Pro	Vidmar et al., 2017
Filamin-B	O75369		peptide-Arg456+Ala-peptide	N	MS	Asn	Ala	Cys	Arg	Ala	Ser	Gly	Arg	Vidmar et al., 2017
Filamin-B	O75369		peptide-Gly1056+Lys-peptide	N	MS	Gly	Leu	Val	Gly	Lys	Pro	Ala	Glu	Vidmar et al., 2017
Filamin-B	O75369		peptide-Lys2301+Val-peptide	N	MS	Ser	Gly	Leu	Lys	Val	Asn	Gln	Pro	Vidmar et al., 2017
Filamin-B	O75369		peptide-Phe1234+Gly-peptide	N	MS	Ile	Lys	Val	Phe	Gly	Pro	Gly	Ile	Vidmar et al., 2017
Filamin-B	O75369		peptide-Gly181+Leu-peptide	N	MS	Cys	Ala	Pro	Gly	Leu	Cys	Pro	Asp	Vidmar et al., 2017
Filamin-B	O75369		peptide-Phe1113+Glu-peptide	N	MS	Asn	Ile	Leu	Phe	Glu	Glu	Val	His	Vidmar et al., 2017
Filamin-B	O75369		peptide-Ala684+Gln-peptide	N	MS	Lys	Ile	Phe	Ala	Gln	Asp	Gly	Glu	Vidmar et al., 2017
Filamin-B	O75369		peptide-Leu2277+Val-peptide	N	MS	Ser	Pro	Tyr	Leu	Val	Pro	Val	Ile	Vidmar et al., 2017
Filamin-C	Q14315		peptide-Gln170+Asn-peptide	N	MS	Gly	Trp	Ile	Gln	Asn	Lys	Val	Pro	Vidmar et al., 2017
Filamin-C	Q14315		peptide-Thr2562+Tyr-peptide	N	MS	His	Val	Val	Thr	Tyr	Thr	Pro	Met	Vidmar et al., 2017
Filamin-C	Q14315		peptide-Lys2135+Glu-peptide	N	MS	Gly	Arg	Met	Lys	Glu	Ser	Ile	Thr	Vidmar et al., 2017
Filamin-C	Q14315		peptide-Thr1041+Tyr-peptide	N	MS	Val	Asp	Ile	Thr	Tyr	Asp	Gly	His	Vidmar et al., 2017
Filamin-C	Q14315		peptide-Ser1893+Leu-peptide	N	MS	Gly	Gly	Leu	Ser	Leu	Ala	Val	Glu	Vidmar et al., 2017
Filamin-C	Q14315		peptide-Glu2262+Ala-peptide	N	MS	Gly	Lys	Val	Glu	Ala	Ala	Glu	Ile	Vidmar et al., 2017
Filamin-C	Q14315		peptide-Gly1078+Thr-peptide	N	MS	Gly	Leu	Val	Gly	Thr	Pro	Ala	Pro	Vidmar et al., 2017
Filamin-C	Q14315		peptide-Lys2709+Trp-peptide	N	MS	Leu	Ile	Val	Lys	Trp	Gly	Asp	Glu	Vidmar et al., 2017
Filamin-C	Q14315		peptide-Gly2223+Asp-peptide	N	MS	Ala	Val	Phe	Gly	Asp	Phe	Leu	Gly	Vidmar et al., 2017
Filamin-C	Q14315		peptide-Gly1837+Ile-peptide	N	MS	His	Gln	Met	Gly	Ile	Lys	Tyr	Asp	Vidmar et al., 2017
Filamin-C	Q14315		peptide-Phe1135+Ala-peptide	N	MS	Asn	Ile	Leu	Phe	Ala	Glu	Ala	His	Vidmar et al., 2017
Filamin-C	Q14315		peptide-Arg1931+Phe-peptide	N	MS	Ile	Ile	Val	Arg	Phe	Asp	Asp	Lys	Vidmar et al., 2017
Filamin-C	Q14315		peptide-Thr1915+Val-peptide	N	MS	Gly	Thr	Cys	Thr	Val	Ser	Tyr	Leu	Vidmar et al., 2017
Filamin-C	Q14315		peptide-Ile235+Ala-peptide	N	MS	Pro	Gln	Val	Ile	Ala	Pro	Glu	Glu	Vidmar et al., 2017
Filamin-C	Q14315		peptide-Lys2291+Tyr-peptide	N	MS	Val	Ala	Val	Lys	Tyr	Arg	Gly	Gln	Vidmar et al., 2017
Filamin-C	Q14315		peptide-Leu1733+Ala-peptide	N	MS	Phe	His	Val	Leu	Ala	Cys	Asp	Pro	Vidmar et al., 2017
Flap endonuclease 1	P39748	110-125	Gln-Leu-Gln112+Gln-Peptide	N	MS	-	Gln	Leu	Gln	Gln	Ala	Gln	Ala	Biniossek et al., 2011
Flap endonuclease 1	P39748		peptide-Lys297+Trp-peptide	N	MS	Val	Glu	Leu	Lys	Trp	Ser	Glu	Pro	Vidmar et al., 2017
Flap endonuclease 1	P39748		peptide-Lys93+Ser-peptide	N	MS	Pro	Gln	Leu	Lys	Ser	Gly	Glu	Leu	Vidmar et al., 2017
Flap endonuclease 1	P39748		peptide-Phe283+Leu-peptide	N	MS	His	Gln	Leu	Phe	Leu	Glu	Pro	Glu	Vidmar et al., 2017
Fructose-bisphosphate aldolase A	P04075	29-42	Gly-IIe-Leu31+Ala-Peptide	N	MS	-	Gly	Ile	Leu	Ala	Ala	Asp	Glu	Biniossek et al., 2011
Fructose-bisphosphate aldolase A	P04075	29-42	Gly-IIe-Leu-Ala32+Ala-Peptide	N	MS	Gly	Ile	Leu	Ala	Ala	Asp	Glu	Ser	Biniossek et al., 2011
Fructose-bisphosphate aldolase A	P04075	216-243	Peptide-Leu229+Lys-Peptide	N	MS	Gly	Thr	Leu	Leu	Lys	Pro	Asn	Met	Biniossek et al., 2011
Fructose-bisphosphate aldolase A	P04075	44-56	Leu-Gln45+Ser-Peptide	N	MS	-	-	Leu	Gln	Ser	Ile	Gly	Thr	Biniossek et al., 2011
Fructose-bisphosphate aldolase A	P04075	216-243	Peptide-Met233+Val-Peptide	N	MS	Lys	Pro	Asn	Met	Val	Thr	Pro	Gly	Biniossek et al., 2011
Fructose-bisphosphate aldolase A	P04075	2-13	Pro-Tyr-Gln4+Tyr-Peptide	N	MS	-	Pro	Tyr	Gln	Tyr	Pro	Ala	Leu	Biniossek et al., 2011
Fructose-bisphosphate aldolase A	P04075		peptide-Gln179+Gln-peptide	N	MS	Ser	Ile	Cys	Gln	Gln	Asn	Gly	Ile	Vidmar et al., 2017
Fructose-bisphosphate aldolase A	P04075		peptide-Leu64+Thr-peptide	N	MS	Gln	Leu	Leu	Leu	Thr	Ala	Asp	Asp	Vidmar et al., 2017
Fructose-bisphosphate aldolase A	P04075		peptide-Thr65+Ala-peptide	N	MS	Leu	Leu	Leu	Thr	Ala	Asp	Asp	Arg	Vidmar et al., 2017
Fructose-bisphosphate aldolase A	P04075		peptide-Leu63+Leu-peptide	N	MS	Arg	Gln	Leu	Leu	Leu	Thr	Ala	Asp	Vidmar et al., 2017
Fructose-bisphosphate aldolase A	P04075		peptide-Lys153+Ile-peptide	N	MS	Cys	Val	Leu	Lys	Ile	Gly	Glu	His	Vidmar et al., 2017
Fructose-bisphosphate aldolase A	P04075		peptide-Lys139+Lys-peptide	N	MS	Ala	Gln	Tyr	Lys	Lys	Asp	Gly	Ala	Vidmar et al., 2017
Fructose-bisphosphate aldolase A	P04075		peptide-Thr299+Phe-peptide	N	MS	Trp	Ala	Leu	Thr	Phe	Ser	Tyr	Gly	Vidmar et al., 2017
Fructose-bisphosphate aldolase A	P04075		peptide-Lys322+Ala-peptide	N	MS	Glu	Asn	Leu	Lys	Ala	Ala	Gln	Glu	Vidmar et al., 2017
Fructose-bisphosphate aldolase A	P04075		peptide-Ser17+Asp-peptide	N	MS	Lys	Glu	Leu	Ser	Asp	Ile	Ala	His	Vidmar et al., 2017
Fructose-bisphosphate aldolase A	P04075		peptide-Asn285+Ala-peptide	N	MS	Ile	Asn	Leu	Asn	Ala	Ile	Asn	Lys	Vidmar et al., 2017
Fructose-bisphosphate aldolase A	P04075		peptide-Gln86+Lys-peptide	N	MS	Thr	Leu	Tyr	Gln	Lys	Ala	Asp	Asp	Vidmar et al., 2017
Fructose-bisphosphate aldolase C	P09972	112-134	Peptide-Ala117+Gly-Peptide	N	MS	Val	Pro	Leu	Ala	Gly	Thr	Asp	Gly	Biniossek et al., 2011
Fumarate hydratase, mitochondrial	P07954		peptide-Lys61+Val-peptide	N	MS	Gly	Glu	Leu	Lys	Val	Pro	Asn	Asp	Vidmar et al., 2017
Fumarate hydratase, mitochondrial	P07954		peptide-Asn154+Glu-peptide	N	MS	Met	Asn	Val	Asn	Glu	Val	Ile	Ser	Vidmar et al., 2017
Fumarate hydratase, mitochondrial	P07954		peptide-Lys100+Arg-peptide	N	MS	Gly	Ile	Leu	Lys	Arg	Ala	Ala	Ala	Vidmar et al., 2017
Fumarate hydratase, mitochondrial	P07954		peptide-Thr493+Ala-peptide	N	MS	Gly	Tyr	Leu	Thr	Ala	Glu	Gln	Phe	Vidmar et al., 2017
Fumarate hydratase, mitochondrial	P07954		peptide-Asn133+Asp-peptide	N	MS	Gly	Lys	Leu	Asn	Asp	His	Phe	Pro	Vidmar et al., 2017
Fumarate hydratase, mitochondrial	P07954		peptide-Lys263+Ala-peptide	N	MS	Thr	Arg	Ile	Lys	Ala	Ala	Met	Pro	Vidmar et al., 2017
Fumarate hydratase, mitochondrial	P07954		peptide-Lys337+Ile-peptide	N	MS	Ser	Leu	Met	Lys	Ile	Ala	Asn	Asp	Vidmar et al., 2017
G patch domain and KOW motifs-containing protein	Q92917	56-67	Glu-Leu-Gln58+Ser-Peptide	N	MS	-	Glu	Leu	Gln	Ser	Val	Lys	Pro	Biniossek et al., 2011
G-rich sequence factor 1	Q12849		peptide-Gln411+Ala-peptide	N	MS	Leu	Pro	Phe	Gln	Ala	Asn	Ala	Gln	Vidmar et al., 2017
Galectin-1	P09382		peptide-Arg21+Gly-peptide	N	MS	Leu	Arg	Val	Arg	Gly	Glu	Val	Ala	Vidmar et al., 2017
Galectin-1	P09382		peptide-Asn51+Ala-peptide	N	MS	Pro	Arg	Phe	Asn	Ala	His	Gly	Asp	Vidmar et al., 2017
Galectin-1	P09382		peptide-Cys89+Ile-peptide	N	MS	Ala	Glu	Val	Cys	Ile	Thr	Phe	Asp	Vidmar et al., 2017
Galectin-3	P17931		peptide-Ile115+Val-peptide	N	MS	Gly	Pro	Leu	Ile	Val	Pro	Tyr	Asn	Vidmar et al., 2017
Galectin-3	P17931		peptide-Asn119+Leu-peptide	N	MS	Val	Pro	Tyr	Asn	Leu	Pro	Leu	Pro	Vidmar et al., 2017
Gamma-enolase	P09104	33-48	Peptide-Gly38+Ala-Peptide	N	MS	Val	Pro	Ser	Gly	Ala	Ser	Thr	Gly	Biniossek et al., 2011
Gamma-enolase	P09104	133-162	Peptide-Asn151+Val-Peptide	N	MS	Pro	Ala	Phe	Asn	Val	Ile	Asn	Gly	Biniossek et al., 2011
Gamma-tubulin complex component 3	Q96CW5	489-506	Peptide-His494+Gln-Peptide	N	MS	Asn	Phe	Leu	His	Gln	Val	Cys	His	Biniossek et al., 2011
GC-rich sequence DNA-binding factor 2	P16383	587-601	Val-IIe-Leu-Glu590+Glu-Peptide	N	MS	Val	Ile	Leu	Glu	Glu	His	Ser	Thr	Biniossek et al., 2011
Glucose-6-phosphate isomerase	P06744	181-194	Peptide-Ser185+Asn-Peptide	N	MS	Trp	Tyr	Val	Ser	Asn	Ile	Asp	Gly	Biniossek et al., 2011
Glucose-6-phosphate isomerase	P06744	212-226	Thr-Phe-Thr214+Thr-Peptide	N	MS	-	Thr	Phe	Thr	Thr	Gln	Glu	Thr	Biniossek et al., 2011
Glucose-6-phosphate isomerase	P06744		peptide-Trp380+Gly-peptide	N	MS	Pro	Ile	Val	Trp	Gly	Glu	Pro	Gly	Vidmar et al., 2017
Glucose-6-phosphate isomerase	P06744		peptide-Ala522+Lys-peptide	N	MS	Lys	Gln	Leu	Ala	Lys	Lys	Ile	Glu	Vidmar et al., 2017
Glucose-6-phosphate isomerase	P06744		peptide-Thr5+Arg-peptide	N	MS	Ala	Ala	Leu	Thr	Arg	Asp	Pro	Gln	Vidmar et al., 2017
Glucose-6-phosphate isomerase	P06744		peptide-Phe468+Glu-peptide	N	MS	His	Lys	Val	Phe	Glu	Gly	Asn	Arg	Vidmar et al., 2017
Glucose-6-phosphate isomerase	P06744		peptide-Thr536+Ser-peptide	N	MS	Ala	Gln	Val	Thr	Ser	His	Asp	Ala	Vidmar et al., 2017
Glucosidase 2 subunit beta	P14314	356-374	Peptide-Thr363+Gln-Peptide	N	MS	Asp	Glu	Gln	Thr	Gln	Ala	Phe	Ile	Biniossek et al., 2011
Glucosidase 2 subunit beta	P14314	438-459	Peptide-Gly450+Ser-Peptide	N	MS	Gly	Thr	Trp	Gly	Ser	Trp	Ile	Gly	Biniossek et al., 2011
Glutamate dehydrogenase 1, mitochondrial	P00367	232-268	Peptide-Thr256+Gly-Peptide	N	MS	Ala	Cys	Val	Thr	Gly	Lys	Pro	Ile	Biniossek et al., 2011
Glutamate dehydrogenase 1, mitochondrial	P00367		peptide-Ser270+Ala-peptide	N	MS	Gly	Arg	Ile	Ser	Ala	Thr	Gly	Arg	Vidmar et al., 2017
Glutamate dehydrogenase 1, mitochondrial	P00367		peptide-Lys187+Ile-peptide	N	MS	Ala	Gly	Val	Lys	Ile	Asn	Pro	Lys	Vidmar et al., 2017
Glutamate dehydrogenase 1, mitochondrial	P00367		peptide-Glu71+Gly-peptide	N	MS	Lys	Met	Val	Glu	Gly	Phe	Phe	Asp	Vidmar et al., 2017
Glutaredoxin-3	O76003		peptide-Asn272+Ser-peptide	N	MS	Glu	Ile	Leu	Asn	Ser	Thr	Gly	Val	Vidmar et al., 2017
Glutaredoxin-3	O76003		peptide-Tyr204+Val-peptide	N	MS	Pro	Gln	Leu	Tyr	Val	Ser	Gly	Glu	Vidmar et al., 2017
Glutaredoxin-3	O76003		peptide-Lys322+Glu-peptide	N	MS	Lys	Glu	Leu	Lys	Glu	Asn	Gly	Glu	Vidmar et al., 2017
Glutathione S-transferase omega-1	P78417		peptide-Leu216+Thr-peptide	N	MS	Ser	Ala	Leu	Leu	Thr	Ser	Glu	Lys	Vidmar et al., 2017
Glutathione S-transferase P	P09211		peptide-Ser106+Leu-peptide	N	MS	Lys	Tyr	Ile	Ser	Leu	Ile	Tyr	Thr	Vidmar et al., 2017
Glutathione S-transferase P	P09211		peptide-Thr35+Val-peptide	N	MS	Glu	Val	Val	Thr	Val	Glu	Thr	Trp	Vidmar et al., 2017
Glutathione S-transferase P	P09211		peptide-Asn201+Leu-peptide	N	MS	Glu	Tyr	Val	Asn	Leu	Pro	Ile	Asn	Vidmar et al., 2017
Glutathione synthetase	P48637		peptide-Leu320+Leu-peptide	N	MS	Leu	Glu	Met	Leu	Leu	Pro	Gly	Gln	Vidmar et al., 2017
Glyceraldehyde-3-phosphate dehydrogenase	P04406	28-55	Peptide-Met46+Phe-Peptide	N	MS	Met	Val	Tyr	Met	Phe	Gln	Tyr	Asp	Biniossek et al., 2011
Glyceraldehyde-3-phosphate dehydrogenase	P04406	67-80	Leu-Val-IIe-Asn70+Gly-Peptide	N	MS	Leu	Val	Ile	Asn	Gly	Asn	Pro	Ile	Biniossek et al., 2011
Glyceraldehyde-3-phosphate dehydrogenase	P04406		peptide-Ser283+Ser-peptide	N	MS	Gln	Val	Val	Ser	Ser	Asp	Phe	Asn	Vidmar et al., 2017
Glyceraldehyde-3-phosphate dehydrogenase	P04406		peptide-Lys309+Leu-peptide	N	MS	His	Phe	Val	Lys	Leu	Ile	Ser	Trp	Vidmar et al., 2017
Glyceraldehyde-3-phosphate dehydrogenase	P04406		peptide-Lys84+Ile-peptide	N	MS	Asp	Pro	Ser	Lys	Ile	Lys	Trp	Gly	Vidmar et al., 2017
Glyceraldehyde-3-phosphate dehydrogenase	P04406		peptide-Leu157+Ala-peptide	N	MS	Thr	Asn	Cys	Leu	Ala	Pro	Leu	Ala	Vidmar et al., 2017
Glyceraldehyde-3-phosphate dehydrogenase	P04406		peptide-Gly218+Lys-peptide	N	MS	Lys	Ala	Val	Gly	Lys	Val	Ile	Pro	Vidmar et al., 2017
Glyceraldehyde-3-phosphate dehydrogenase	P04406		peptide-Met133+Gly-peptide	N	MS	Met	Phe	Val	Met	Gly	Val	Asn	His	Vidmar et al., 2017
Glyceraldehyde-3-phosphate dehydrogenase	P04406		peptide-Ala161+Lys-peptide	N	MS	Ala	Pro	Leu	Ala	Lys	Val	Ile	His	Vidmar et al., 2017
Glyceraldehyde-3-phosphate dehydrogenase	P04406		peptide-Arg20+Ala-peptide	N	MS	Leu	Val	Thr	Arg	Ala	Ala	Phe	Asn	Vidmar et al., 2017
Glyceraldehyde-3-phosphate dehydrogenase	P04406		peptide-Val18+Thr-peptide	N	MS	Gly	Arg	Leu	Val	Thr	Arg	Ala	Ala	Vidmar et al., 2017
Glyceraldehyde-3-phosphate dehydrogenase	P04406		peptide-Ser241+Val-peptide	N	MS	Ala	Asn	Val	Ser	Val	Val	Asp	Leu	Vidmar et al., 2017
Glyceraldehyde-3-phosphate dehydrogenase	P04406		peptide-Ala232+Phe-peptide	N	MS	Thr	Gly	Met	Ala	Phe	Arg	Val	Pro	Vidmar et al., 2017
Glyceraldehyde-3-phosphate dehydrogenase	P04406		peptide-Ile311+Ser-peptide	N	MS	Val	Lys	Leu	Ile	Ser	Trp	Tyr	Asp	Vidmar et al., 2017
Glyceraldehyde-3-phosphate dehydrogenase	P04406		peptide-Ala32+Ile-peptide	N	MS	Asp	Ile	Val	Ala	Ile	Asn	Asp	Pro	Vidmar et al., 2017
Glyceraldehyde-3-phosphate dehydrogenase	P04406		peptide-Val132+Met-peptide	N	MS	Pro	Met	Phe	Val	Met	Gly	Val	Asn	Vidmar et al., 2017
Glyceraldehyde-3-phosphate dehydrogenase	P04406		peptide-Arg248+Leu-peptide	N	MS	Leu	Thr	Cys	Arg	Leu	Glu	Lys	Pro	Vidmar et al., 2017
Glyceraldehyde-3-phosphate dehydrogenase	P04406		peptide-Asp189+Gly-peptide	N	MS	Lys	Thr	Val	Asp	Gly	Pro	Ser	Gly	Vidmar et al., 2017
Glyceraldehyde-3-phosphate dehydrogenase	P04406		peptide-Gly319+Tyr-peptide	N	MS	Asn	Glu	Phe	Gly	Tyr	Ser	Asn	Arg	Vidmar et al., 2017
Glyceraldehyde-3-phosphate dehydrogenase	P04406		peptide-Gln204+Asn-peptide	N	MS	Gly	Ala	Leu	Gln	Asn	Ile	Ile	Pro	Vidmar et al., 2017
Glyceraldehyde-3-phosphate dehydrogenase	P04406		peptide-Ser321+Asn-peptide	N	MS	Phe	Gly	Tyr	Ser	Asn	Arg	Val	Val	Vidmar et al., 2017
Glyceraldehyde-3-phosphate dehydrogenase	P04406		peptide-Glu97+Ser-peptide	N	MS	Tyr	Val	Val	Glu	Ser	Thr	Gly	Val	Vidmar et al., 2017
Glyceraldehyde-3-phosphate dehydrogenase	P04406		peptide-Thr182+Ala-peptide	N	MS	His	Ala	Ile	Thr	Ala	Thr	Gln	Lys	Vidmar et al., 2017
Glyceraldehyde-3-phosphate dehydrogenase	P04406		peptide-Thr19+Arg-peptide	N	MS	Arg	Leu	Val	Thr	Arg	Ala	Ala	Phe	Vidmar et al., 2017
Glyceraldehyde-3-phosphate dehydrogenase	P04406		peptide-Gln78+Glu-peptide	N	MS	Thr	Ile	Phe	Gln	Glu	Arg	Asp	Pro	Vidmar et al., 2017
Glyceraldehyde-3-phosphate dehydrogenase	P04406		peptide-Lys61+Ala-peptide	N	MS	Gly	Thr	Val	Lys	Ala	Glu	Asn	Gly	Vidmar et al., 2017
Glyceraldehyde-3-phosphate dehydrogenase	P04406		peptide-Ser312+Trp-peptide	N	MS	Lys	Leu	Ile	Ser	Trp	Tyr	Asp	Asn	Vidmar et al., 2017
Glyceraldehyde-3-phosphate dehydrogenase	P04406		peptide-Glu250+Lys-peptide	N	MS	Cys	Arg	Leu	Glu	Lys	Pro	Ala	Lys	Vidmar et al., 2017
Glycylpeptide N-tetradecanoyltransferase 2	O60551	130-148	Peptide-Thr135+Ser-Peptide	N	MS	Glu	Val	Ile	Thr	Ser	His	Gly	Ala	Biniossek et al., 2011
Glyoxylate reductase/hydroxypyruvate reductase	Q9UBQ7		peptide-Thr271+Ser-peptide	N	MS	Leu	Asp	Val	Thr	Ser	Pro	Glu	Pro	Vidmar et al., 2017
GMP synthase [glutamine-hydrolyzing]	P49915	124-194	Leu-Tyr-Gly186+Ala-Peptide	N	MS	-	Leu	Tyr	Gly	Ala	Gln	Phe	His	Biniossek et al., 2011
Golgin subfamily A member 3	Q08378		peptide-Gln1045+Ala-peptide	N	MS	Glu	Arg	Ile	Gln	Ala	Leu	Glu	Ala	Vidmar et al., 2017
GRWHKFSVRWE			GRWHKFS+VRWE	S		His	Lys	Phe	Ser	Val	Arg	Trp	Glu	Ruckrich et al., 2006
GRWHKISVRWE			GRWHKIS+VRWE	S		His	Lys	Ile	Ser	Val	Arg	Trp	Glu	Ruckrich et al., 2006
GRWHKLSVRWE			GRWHKLS+VRWE	S		His	Lys	Leu	Ser	Val	Arg	Trp	Glu	Ruckrich et al., 2006
GRWHKVSVRWE			GRWHKVS+VRWE	S		His	Lys	Val	Ser	Val	Arg	Trp	Glu	Ruckrich et al., 2006
GTP-binding nuclear protein Ran	P62826	2-12	Ala-Ala-Gln4+Gly-Peptide	N	MS	-	Ala	Ala	Gln	Gly	Glu	Pro	Gln	Biniossek et al., 2011
GTP-binding nuclear protein Ran	P62826	39-53	Peptide-Glu46+Val-Peptide	N	MS	Leu	Gly	Val	Glu	Val	His	Pro	Leu	Biniossek et al., 2011
GTP-binding protein SAR1a	Q9NR31		peptide-Thr70+Phe-peptide	N	MS	Ala	Gly	Met	Thr	Phe	Thr	Thr	Phe	Vidmar et al., 2017
GTP-binding protein SAR1a	Q9NR31		peptide-Trp86+Lys-peptide	N	MS	Arg	Arg	Val	Trp	Lys	Asn	Tyr	Leu	Vidmar et al., 2017
HCG1820743, isoform CRA_a	Q4G0Q5	129-168	Peptide-Gly154+Ala-Peptide	N	MS	Val	Leu	Gly	Gly	Ala	Glu	Ala	Gly	Biniossek et al., 2011
HCG32827, isoform CRA_d	C9J4G0	104-133	Peptide-Ser120+Ser-Peptide	N	MS	Pro	Pro	Ser	Ser	Ser	Ser	Val	Pro	Biniossek et al., 2011
Heat shock 70 kDa protein 1A/1B	P08107	574-595	Peptide-Ala587+Glu-Peptide	N	MS	Asn	Thr	Leu	Ala	Glu	Lys	Asp	Glu	Biniossek et al., 2011
Heat shock 70 kDa protein 1A/1B	P08107	237-246	Leu-Val-Asn239+His-Peptide	N	MS	-	Leu	Val	Asn	His	Phe	Val	Glu	Biniossek et al., 2011
Heat shock 70 kDa protein 1A/1B	P08107	57-71	Asn-Gln-Val-Ala60+Leu-Peptide	N	MS	Asn	Gln	Val	Ala	Leu	Asn	Pro	Gln	Biniossek et al., 2011
Heat shock 70 kDa protein 1A/1B	P08107	89-102	Peptide-Gln93+Val-Peptide	N	MS	Trp	Pro	Phe	Gln	Val	Ile	Asn	Asp	Biniossek et al., 2011
Heat shock 70 kDa protein 4	P34932	522-543	Peptide-Glu532+Glu-Peptide	N	MS	Pro	His	Val	Glu	Glu	Gln	Gln	Gln	Biniossek et al., 2011
Heat shock 70 kDa protein 4	P34932	306-316	Phe-Leu-Glu308+Met-Peptide	N	MS	-	Phe	Leu	Glu	Met	Cys	Asn	Asp	Biniossek et al., 2011
Heat shock 70 kDa protein 4	P34932	222-234	Val-Leu-Ala224+Thr-Peptide	N	MS	-	Val	Leu	Ala	Thr	Ala	Phe	Asp	Biniossek et al., 2011
Heat shock 70 kDa protein 4	P34932		peptide-Gln607+Asp-peptide	N	MS	Met	Ile	Met	Gln	Asp	Lys	Leu	Glu	Vidmar et al., 2017
Heat shock 70 kDa protein 4	P34932		peptide-Gly49+Ala-peptide	N	MS	Arg	Ser	Ile	Gly	Ala	Ala	Ala	Lys	Vidmar et al., 2017
Heat shock cognate 71 kDa protein	P11142	221-236	Peptide-Gly224+Asp-Peptide	N	MS	Ser	Thr	Ala	Gly	Asp	Thr	His	Leu	Biniossek et al., 2011
Heat shock cognate 71 kDa protein	P11142	237-246	Met-Val-Asn239+His-Peptide	N	MS	-	Met	Val	Asn	His	Phe	Ile	Ala	Biniossek et al., 2011
Heat shock factor-binding protein 1	O75506	51-75	Peptide-Glu65+Ser-Peptide	N	MS	Glu	Glu	Leu	Glu	Ser	Glu	Asn	Lys	Biniossek et al., 2011
Heat shock protein 105 kDa	Q92598	501-529	Peptide-Asn518+Gln-Peptide	N	MS	Glu	Cys	Leu	Asn	Gln	Arg	Pro	Pro	Biniossek et al., 2011
Heat shock protein 105 kDa	Q92598		peptide-Glu813+Arg-peptide	N	MS	Pro	Lys	Leu	Glu	Arg	Thr	Pro	Asn	Vidmar et al., 2017
Heat shock protein 75 kDa, mitochondrial	Q12931	68-87	Peptide-Ser76+Ser-Peptide	N	MS	Ser	Ile	Ile	Ser	Ser	Thr	Glu	Ser	Biniossek et al., 2011
Heat shock protein beta-1	P04792		peptide-Ser98+Leu-peptide	N	MS	Trp	Arg	Val	Ser	Leu	Asp	Val	Asn	Vidmar et al., 2017
Heat shock protein beta-1	P04792		peptide-Thr143+Leu-peptide	N	MS	Arg	Lys	Tyr	Thr	Leu	Pro	Pro	Gly	Vidmar et al., 2017
Heat shock protein beta-1	P04792		peptide-Arg20+Asp-peptide	N	MS	Asp	Pro	Phe	Arg	Asp	Trp	Tyr	Pro	Vidmar et al., 2017
Heat shock protein beta-1	P04792		peptide-Gly34+Leu-peptide	N	MS	Gln	Ala	Phe	Gly	Leu	Pro	Arg	Leu	Vidmar et al., 2017
Heat shock protein beta-1	P04792		peptide-Gly47+Gly-peptide	N	MS	Gln	Trp	Leu	Gly	Gly	Ser	Ser	Trp	Vidmar et al., 2017
Heat shock protein beta-1	P04792		peptide-Arg12+Gly-peptide	N	MS	Ser	Leu	Leu	Arg	Gly	Pro	Ser	Trp	Vidmar et al., 2017
Heat shock protein HSP 90-alpha	P07900	420-434	Peptide-Thr425+Glu-Peptide	N	MS	Glu	Leu	Phe	Thr	Glu	Leu	Ala	Glu	Biniossek et al., 2011
Heat shock protein HSP 90-alpha	P07900	88-100	Thr-Leu-Thr90+IIe-Peptide	N	MS	-	Thr	Leu	Thr	Ile	Val	Asp	Thr	Biniossek et al., 2011
Heat shock protein HSP 90-alpha	P07900	661-687	Peptide-Ser677+Leu-Peptide	N	MS	Ser	Gly	Phe	Ser	Leu	Glu	Asp	Pro	Biniossek et al., 2011
Heat shock protein HSP 90-alpha	P07900	186-201	Val-IIe-Leu-His189+Leu-Peptide	N	MS	Val	Ile	Leu	His	Leu	Lys	Glu	Asp	Biniossek et al., 2011
Heat shock protein HSP 90-alpha	P07900	547-559	Glu-Gly-Leu-Glu550+Leu-Peptide	N	MS	Glu	Gly	Leu	Glu	Leu	Pro	Glu	Asp	Biniossek et al., 2011
Heat shock protein HSP 90-alpha	P07900	315-327	Ser-Leu-Thr317+Asn-Peptide	N	MS	-	Ser	Leu	Thr	Asn	Asp	Trp	Glu	Biniossek et al., 2011
Heat shock protein HSP 90-alpha	P07900	465-478	Tyr-Tyr-Thr467+Ser-Peptide	N	MS	-	Tyr	Tyr	Thr	Ser	Ala	Ser	Gly	Biniossek et al., 2011
Heat shock protein HSP 90-alpha	P07900		peptide-Glu635+Ile-peptide	N	MS	Lys	His	Leu	Glu	Ile	Asn	Pro	Asp	Vidmar et al., 2017
Heat shock protein HSP 90-beta	P08238	625-636	His-Leu-Glu627+IIe-Peptide	N	MS	-	His	Leu	Glu	Ile	Asn	Pro	Asp	Biniossek et al., 2011
Heat shock protein HSP 90-beta	P08238	42-55	Glu-Leu-IIe-Ser45+Asn-Peptide	N	MS	Glu	Leu	Ile	Ser	Asn	Ala	Ser	Asp	Biniossek et al., 2011
Heat shock protein HSP 90-beta	P08238	320-330	His-Phe-Ser322+Val-Peptide	N	MS	-	His	Phe	Ser	Val	Glu	Gly	Gln	Biniossek et al., 2011
Heat shock protein HSP 90-beta	P08238	412-426	Peptide-Ser417+Glu-Peptide	N	MS	Glu	Leu	Phe	Ser	Glu	Leu	Ala	Glu	Biniossek et al., 2011
Heat shock protein HSP 90-beta	P08238		peptide-Gly92+Met-peptide	N	MS	Thr	Gly	Ile	Gly	Met	Thr	Lys	Ala	Vidmar et al., 2017
Heat shock protein HSP 90-beta	P08238		peptide-Lys186+Glu-peptide	N	MS	Leu	His	Leu	Lys	Glu	Asp	Gln	Thr	Vidmar et al., 2017
Heat shock protein HSP 90-beta	P08238		peptide-Lys438+Leu-peptide	N	MS	Lys	Asn	Leu	Lys	Leu	Gly	Ile	His	Vidmar et al., 2017
Heat shock protein HSP 90-beta	P08238		peptide-Glu712+Gly-peptide	N	MS	Pro	Pro	Leu	Glu	Gly	Asp	Glu	Asp	Vidmar et al., 2017
Heat shock protein HSP 90-beta	P08238		peptide-Lys72+Ile-peptide	N	MS	Lys	Glu	Leu	Lys	Ile	Asp	Ile	Ile	Vidmar et al., 2017
Heat shock protein HSP 90-beta	P08238		peptide-Thr514+Glu-peptide	N	MS	Val	Tyr	Met	Thr	Glu	Pro	Ile	Asp	Vidmar et al., 2017
Heat shock protein HSP 90-beta	P08238		peptide-Lys568+Glu-peptide	N	MS	Lys	Leu	Met	Lys	Glu	Ile	Leu	Asp	Vidmar et al., 2017
Heat shock protein HSP 90-beta	P08238		peptide-Ser669+Leu-peptide	N	MS	Ser	Gly	Phe	Ser	Leu	Glu	Asp	Pro	Vidmar et al., 2017
Heat shock protein HSP 90-beta	P08238		peptide-Arg456+Tyr-peptide	N	MS	Glu	Leu	Leu	Arg	Tyr	His	Thr	Ser	Vidmar et al., 2017
Hepatoma-derived growth factor	P51858	107-126	Ser-Cys-Val-Glu110+Glu-Peptide	N	MS	Ser	Cys	Val	Glu	Glu	Pro	Glu	Pro	Biniossek et al., 2011
Hepatoma-derived growth factor-related protein 3	Q9Y3E1	44-60	Peptide-Gly50+Thr-Peptide	N	MS	Phe	Phe	Phe	Gly	Thr	His	Glu	Thr	Biniossek et al., 2011
Heterogeneous nuclear ribonucleoprotein A/B	Q99729		peptide-Lys101+Met-peptide	N	MS	Cys	Thr	Ile	Lys	Met	Asp	Pro	Asn	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein A/B	Q99729		peptide-Gly74+Gly-peptide	N	MS	Met	Phe	Val	Gly	Gly	Leu	Ser	Trp	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein A0	Q13151	49-80	Peptide-Ala66+Ala-Peptide	N	MS	Ala	Ala	Met	Ala	Ala	Ser	Pro	His	Biniossek et al., 2011
Heterogeneous nuclear ribonucleoprotein A1	P09651	266-318	Peptide-Gly307+Gly-Peptide	N	MS	Ser	Asn	Phe	Gly	Gly	Gly	Gly	Ser	Biniossek et al., 2011
Heterogeneous nuclear ribonucleoprotein A1	P09651	16-31	Leu-Phe-IIe-Gly19+Gly-Peptide	N	MS	Leu	Phe	Ile	Gly	Gly	Leu	Ser	Phe	Biniossek et al., 2011
Heterogeneous nuclear ribonucleoprotein A1	P09651		peptide-Gly358+Gly-peptide	N	MS	Gly	Gly	Tyr	Gly	Gly	Ser	Ser	Ser	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein A1	P09651		peptide-Val45+Met-peptide	N	MS	Asp	Cys	Val	Val	Met	Arg	Asp	Pro	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein A1	P09651		peptide-Glu126+Gln-peptide	N	MS	Asp	Tyr	Phe	Glu	Gln	Tyr	Gly	Lys	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein A1	P09651		peptide-Gln321+Ser-peptide	N	MS	Tyr	Asn	Asn	Gln	Ser	Ser	Asn	Phe	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein A1	P09651		peptide-Gly342+Gly-peptide	N	MS	Gly	Pro	Tyr	Gly	Gly	Gly	Gly	Gln	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein A1	P09651		peptide-Phe17+Ile-peptide	N	MS	Arg	Lys	Leu	Phe	Ile	Gly	Gly	Leu	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein A1	P09651		peptide-Thr152+Phe-peptide	N	MS	Ala	Phe	Val	Thr	Phe	Asp	Asp	His	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein A1	P09651		peptide-Asn313+Asp-peptide	N	MS	Gly	Ser	Tyr	Asn	Asp	Phe	Gly	Asn	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein A1	P09651		peptide-Lys329+Gly-peptide	N	MS	Gly	Pro	Met	Lys	Gly	Gly	Asn	Phe	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein A1	P09651		peptide-Arg31+Ser-peptide	N	MS	Glu	Ser	Leu	Arg	Ser	His	Phe	Glu	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein A1	P09651		peptide-Gly316+Asn-peptide	N	MS	Asn	Asp	Phe	Gly	Asn	Tyr	Asn	Asn	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein A1-like 2	Q32P51		peptide-Gly248+Asn-peptide	N	MS	Asn	Gly	Phe	Gly	Asn	Asp	Gly	Ser	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein A3	P51991		peptide-Lys347+Gly-peptide	N	MS	Gly	Pro	Met	Lys	Gly	Gly	Ser	Phe	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein A3	P51991		peptide-Arg52+Glu-peptide	N	MS	Asp	Ser	Leu	Arg	Glu	His	Phe	Glu	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein A3	P51991		peptide-Thr173+Phe-peptide	N	MS	Ala	Phe	Val	Thr	Phe	Asp	Asp	His	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein A3	P51991		peptide-Gly131+Gly-peptide	N	MS	Ile	Phe	Val	Gly	Gly	Ile	Lys	Glu	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein D-like	O14979	150-162	Met-Phe-IIe152+Gly-Peptide	N	MS	-	Met	Phe	Ile	Gly	Gly	Leu	Ser	Biniossek et al., 2011
Heterogeneous nuclear ribonucleoprotein D-like	O14979	235-250	Val-Phe-Val-Gly238+Gly-Peptide	N	MS	Val	Phe	Val	Gly	Gly	Leu	Ser	Pro	Biniossek et al., 2011
Heterogeneous nuclear ribonucleoprotein D-like	O14979	150-162	Met-Phe-IIe-Gly153+Gly-Peptide	N	MS	Met	Phe	Ile	Gly	Gly	Leu	Ser	Trp	Biniossek et al., 2011
Heterogeneous nuclear ribonucleoprotein D0	Q14103	1-67	Peptide-Gly36+Ala-Peptide	N	MS	Ala	Thr	Gln	Gly	Ala	Ala	Ala	Ala	Biniossek et al., 2011
Heterogeneous nuclear ribonucleoprotein D0	Q14103	1-68	Peptide-Ala38+Ala-Peptide	N	MS	Gln	Gly	Ala	Ala	Ala	Ala	Ala	Gly	Biniossek et al., 2011
Heterogeneous nuclear ribonucleoprotein D0	Q14103	1-68	Peptide-Ala39+Ala-Peptide	N	MS	Gly	Ala	Ala	Ala	Ala	Ala	Gly	Ser	Biniossek et al., 2011
Heterogeneous nuclear ribonucleoprotein D0	Q14103	1-67	Peptide-Ala32+Ala-Peptide	N	MS	Ala	Met	Val	Ala	Ala	Thr	Gln	Gly	Biniossek et al., 2011
Heterogeneous nuclear ribonucleoprotein D0	Q14103	1-67	Peptide-Gly42+Ser-Peptide	N	MS	Ala	Ala	Ala	Gly	Ser	Gly	Ala	Gly	Biniossek et al., 2011
Heterogeneous nuclear ribonucleoprotein D0	Q14103	1-67	Peptide-Ala40+Ala-Peptide	N	MS	Ala	Ala	Ala	Ala	Ala	Gly	Ser	Gly	Biniossek et al., 2011
Heterogeneous nuclear ribonucleoprotein D0	Q14103	1-67	Peptide-Thr51+Ala-Peptide	N	MS	Gly	Gly	Gly	Thr	Ala	Ser	Gly	Gly	Biniossek et al., 2011
Heterogeneous nuclear ribonucleoprotein D0	Q14103	1-67	Peptide-Gln35+Gly-Peptide	N	MS	Ala	Ala	Thr	Gln	Gly	Ala	Ala	Ala	Biniossek et al., 2011
Heterogeneous nuclear ribonucleoprotein D0	Q14103		peptide-Phe100+Ile-peptide	N	MS	Trp	Lys	Met	Phe	Ile	Gly	Gly	Leu	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein D0	Q14103		peptide-Lys98+Met-peptide	N	MS	Glu	Glu	Trp	Lys	Met	Phe	Ile	Gly	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein D0	Q14103		peptide-Lys146+Glu-peptide	N	MS	Val	Leu	Phe	Lys	Glu	Ser	Glu	Ser	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein D0	Q14103		peptide-Lys114+Asp-peptide	N	MS	Lys	Asp	Leu	Lys	Asp	Tyr	Phe	Ser	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein D0	Q14103		peptide-Gly248+Leu-peptide	N	MS	His	Asn	Val	Gly	Leu	Ser	Lys	Cys	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein D0	Q14103		peptide-Gly187+Gly-peptide	N	MS	Ile	Phe	Val	Gly	Gly	Leu	Ser	Pro	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein D0	Q14103		peptide-Lys231+Glu-peptide	N	MS	Ile	Thr	Phe	Lys	Glu	Glu	Glu	Pro	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein F	P52597	1-14	Met-Met-Leu3+Gly-Peptide	N	MS	-	Met	Met	Leu	Gly	Pro	Glu	Gly	Biniossek et al., 2011
Heterogeneous nuclear ribonucleoprotein F	P52597	201-217	Peptide-Gln205+Arg-Peptide	N	MS	Met	Ser	Val	Gln	Arg	Pro	Gly	Pro	Biniossek et al., 2011
Heterogeneous nuclear ribonucleoprotein F	P52597		peptide-Thr142+Leu-peptide	N	MS	Asn	Gly	Ile	Thr	Leu	Pro	Val	Asp	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein F	P52597		peptide-Gly254+Phe-peptide	N	MS	Asp	Gly	Tyr	Gly	Phe	Thr	Thr	Asp	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein F	P52597		peptide-Lys98+His-peptide	N	MS	Trp	Val	Leu	Lys	His	Ser	Gly	Pro	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein H	P31943	1-14	Met-Met-Leu3+Gly-Peptide	N	MS	-	Met	Met	Leu	Gly	Thr	Glu	Gly	Biniossek et al., 2011
Heterogeneous nuclear ribonucleoprotein H	P31943	356-375	Peptide-Asn362+Ser-Peptide	N	MS	Leu	Phe	Leu	Asn	Ser	Thr	Ala	Gly	Biniossek et al., 2011
Heterogeneous nuclear ribonucleoprotein H	P31943	356-375	Peptide-Ser363+Thr-Peptide	N	MS	Phe	Leu	Asn	Ser	Thr	Ala	Gly	Ala	Biniossek et al., 2011
Heterogeneous nuclear ribonucleoprotein H	P31943	1-14	Met-Met-Leu-Gly4+Thr-Peptide	N	MS	Met	Met	Leu	Gly	Thr	Glu	Gly	Gly	Biniossek et al., 2011
Heterogeneous nuclear ribonucleoprotein H	P31943	327-353	Peptide-Ala343+Ala-Peptide	N	MS	Asp	Ala	Val	Ala	Ala	Met	Ser	Lys	Biniossek et al., 2011
Heterogeneous nuclear ribonucleoprotein H	P31943		peptide-Gly254+Phe-peptide	N	MS	Asp	Gly	Tyr	Gly	Phe	Gly	Ser	Asp	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein H	P31943		peptide-Arg299+Ala-peptide	N	MS	Leu	Pro	Tyr	Arg	Ala	Thr	Glu	Asn	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein H	P31943		peptide-Arg49+Glu-peptide	N	MS	Ile	Tyr	Thr	Arg	Glu	Gly	Arg	Pro	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein H	P31943		peptide-Thr48+Arg-peptide	N	MS	Phe	Ile	Tyr	Thr	Arg	Glu	Gly	Arg	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein H	P31943		peptide-Gly177+His-peptide	N	MS	Glu	Arg	Ile	Gly	His	Arg	Tyr	Ile	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein H	P31943		peptide-Arg316+Val-peptide	N	MS	Asn	Pro	Val	Arg	Val	His	Ile	Glu	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein H	P31943		peptide-Gln158+Phe-peptide	N	MS	Ala	Phe	Val	Gln	Phe	Ala	Ser	Gln	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein H	P31943		peptide-Gly121+Cys-peptide	N	MS	Leu	Pro	Phe	Gly	Cys	Ser	Lys	Glu	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein H	P31943		peptide-Gly256+Ser-peptide	N	MS	Tyr	Gly	Phe	Gly	Ser	Asp	Arg	Phe	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein H	P31943		peptide-Thr142+Leu-peptide	N	MS	Asn	Gly	Ile	Thr	Leu	Pro	Val	Asp	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein H	P31943		peptide-Lys98+His-peptide	N	MS	Trp	Val	Leu	Lys	His	Thr	Gly	Pro	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein H3	P31942	175-196	Peptide-Gly182+Gly-Peptide	N	MS	His	Gly	Tyr	Gly	Gly	Ala	Gly	Asp	Biniossek et al., 2011
Heterogeneous nuclear ribonucleoprotein H3	P31942		peptide-Arg205+Ala-peptide	N	MS	Leu	Pro	Phe	Arg	Ala	Thr	Glu	Asn	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein K	P61978	434-449	Peptide-Thr438+Gly-Peptide	N	MS	Ile	Thr	Ile	Thr	Gly	Thr	Gln	Asp	Biniossek et al., 2011
Heterogeneous nuclear ribonucleoprotein K	P61978	149-163	Leu-Leu-IIe-His152+Gln-Peptide	N	MS	Leu	Leu	Ile	His	Gln	Ser	Leu	Ala	Biniossek et al., 2011
Heterogeneous nuclear ribonucleoprotein K	P61978		peptide-Thr240+Met-peptide	N	MS	Gly	Gly	Phe	Thr	Met	Met	Phe	Asp	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein K	P61978		peptide-Ser77+Val-peptide	N	MS	Ala	Ser	Val	Ser	Val	Pro	Asp	Ser	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein K	P61978		peptide-Pro308+Leu-peptide	N	MS	Arg	Asn	Leu	Pro	Leu	Pro	Pro	Pro	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein K	P61978		peptide-Ser89+Ile-peptide	N	MS	Arg	Ile	Leu	Ser	Ile	Ser	Ala	Asp	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein L	P14866	63-97	Peptide-Gly81+Ala-Peptide	N	MS	Gly	Gly	Ala	Gly	Ala	Ala	Gly	Gly	Biniossek et al., 2011
Heterogeneous nuclear ribonucleoprotein M	P52272	628-650	Peptide-Gly639+Gly-Peptide	N	MS	Gly	Ser	Phe	Gly	Gly	Ala	Gly	Gly	Biniossek et al., 2011
Heterogeneous nuclear ribonucleoprotein M	P52272	628-650	Peptide-Ala635+Gly-Peptide	N	MS	Gly	Ser	Phe	Ala	Gly	Ser	Phe	Gly	Biniossek et al., 2011
Heterogeneous nuclear ribonucleoprotein Q	O60506	579-609	Peptide-Gln596+Gly-Peptide	N	MS	Gln	Pro	Leu	Gln	Gly	Gly	Asp	His	Biniossek et al., 2011
Heterogeneous nuclear ribonucleoprotein U	Q00839		peptide-Thr197+Val-peptide	N	MS	Phe	Ala	Val	Thr	Val	Ala	Pro	Pro	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein U	Q00839		peptide-Gln175+Gln-peptide	N	MS	Gln	Pro	Gln	Gln	Gln	Arg	Gly	Ala	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein U	Q00839		peptide-Gly460+Gln-peptide	N	MS	Phe	Asn	Phe	Gly	Gln	Lys	Glu	Lys	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein U	Q00839		peptide-Asp61+Leu-peptide	N	MS	Gly	Ser	Leu	Asp	Leu	Gly	Gly	Asp	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein U	Q00839		peptide-Glu482+Asp-peptide	N	MS	Val	Pro	Leu	Glu	Asp	Arg	Val	Arg	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein U	Q00839		peptide-Thr515+Lys-peptide	N	MS	Thr	Trp	Val	Thr	Lys	His	Ala	Ala	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein U	Q00839		peptide-Glu624+Gly-peptide	N	MS	Ala	Glu	Val	Glu	Gly	Lys	Asp	Leu	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein U	Q00839		peptide-Glu656+Leu-peptide	N	MS	Thr	Tyr	Val	Glu	Leu	Gln	Lys	Glu	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein U	Q00839		peptide-Gln39+Ala-peptide	N	MS	Glu	Arg	Leu	Gln	Ala	Ala	Leu	Asp	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein U	Q00839		peptide-Lys543+Lys-peptide	N	MS	Ala	Gly	Phe	Lys	Lys	Gln	Met	Ala	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoprotein U-like protein 1	Q9BUJ2	528-541	Ala-IIe-Val-IIe531+Cys-Peptide	N	MS	Ala	Ile	Val	Ile	Cys	Pro	Thr	Asp	Biniossek et al., 2011
Heterogeneous nuclear ribonucleoprotein U-like protein 1	Q9BUJ2	194-223	Peptide-Asp214+Thr-Peptide	N	MS	Val	Ala	Ile	Asp	Thr	Tyr	Asn	Cys	Biniossek et al., 2011
Heterogeneous nuclear ribonucleoproteins A2/B1	P22626	154-168	Gly-Phe-Gly156+Phe-Peptide	N	MS	-	Gly	Phe	Gly	Phe	Val	Thr	Phe	Biniossek et al., 2011
Heterogeneous nuclear ribonucleoproteins A2/B1	P22626	326-350	Peptide-Gly332+Gly-Peptide	N	MS	Gly	Pro	Tyr	Gly	Gly	Gly	Asn	Tyr	Biniossek et al., 2011
Heterogeneous nuclear ribonucleoproteins A2/B1	P22626		peptide-Arg54+Asp-peptide	N	MS	Val	Val	Met	Arg	Asp	Pro	Ala	Ser	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoproteins A2/B1	P22626		peptide-Arg129+Asp-peptide	N	MS	His	His	Leu	Arg	Asp	Tyr	Phe	Glu	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoproteins A2/B1	P22626		peptide-Gln197+Ser-peptide	N	MS	Gln	Glu	Val	Gln	Ser	Ser	Arg	Ser	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoproteins A2/B1	P22626		peptide-Gly257+Gly-peptide	N	MS	Gly	Asn	Phe	Gly	Gly	Ser	Pro	Gly	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoproteins A2/B1	P22626		peptide-Val52+Met-peptide	N	MS	Asp	Cys	Val	Val	Met	Arg	Asp	Pro	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoproteins A2/B1	P22626		peptide-Thr159+Phe-peptide	N	MS	Gly	Phe	Val	Thr	Phe	Asp	Asp	His	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoproteins A2/B1	P22626		peptide-Asn307+Gln-peptide	N	MS	Gly	Asn	Tyr	Asn	Gln	Gln	Pro	Ser	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoproteins A2/B1	P22626		peptide-Gly328+Gly-peptide	N	MS	Arg	Asn	Met	Gly	Gly	Pro	Tyr	Gly	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoproteins A2/B1	P22626		peptide-Gly117+Gly-peptide	N	MS	Leu	Phe	Val	Gly	Gly	Ile	Lys	Glu	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoproteins A2/B1	P22626		peptide-Arg228+Gly-peptide	N	MS	Ser	Asn	Phe	Arg	Gly	Gly	Ser	Asp	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoproteins A2/B1	P22626		peptide-Lys317+Ser-peptide	N	MS	Gly	Pro	Met	Lys	Ser	Gly	Asn	Phe	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoproteins A2/B1	P22626		peptide-Gly208+Phe-peptide	N	MS	Gly	Asn	Phe	Gly	Phe	Gly	Asp	Ser	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoproteins A2/B1	P22626		peptide-Gly210+Asp-peptide	N	MS	Phe	Gly	Phe	Gly	Asp	Ser	Arg	Gly	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoproteins C1/C2	P07910		peptide-Leu211+Glu-peptide	N	MS	Asp	Ser	Leu	Leu	Glu	Asn	Leu	Glu	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoproteins C1/C2	P07910		peptide-Ser119+Ser-peptide	N	MS	Pro	Leu	Leu	Ser	Ser	Ser	Phe	Asp	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoproteins C1/C2	P07910		peptide-Arg142+Val-peptide	N	MS	Tyr	Pro	Ala	Arg	Val	Pro	Pro	Pro	Vidmar et al., 2017
Heterogeneous nuclear ribonucleoproteins C1/C2	P07910		peptide-Glu227+Met-peptide	N	MS	Gln	Ala	Val	Glu	Met	Lys	Asn	Asp	Vidmar et al., 2017
Hexokinase-2	P52789	50-62	Gly-Leu-Gly52+Ala-Peptide	N	MS	-	Gly	Leu	Gly	Ala	Thr	Thr	His	Biniossek et al., 2011
High mobility group protein B1	P09429	128-146	Peptide-Asn134+Asn-Peptide	N	MS	Glu	Met	Trp	Asn	Asn	Thr	Ala	Ala	Biniossek et al., 2011
High mobility group protein B1	P09429	129-146	Peptide-Thr136+Ala-Peptide	N	MS	Trp	Asn	Asn	Thr	Ala	Ala	Asp	Asp	Biniossek et al., 2011
High mobility group protein B1	P09429		peptide-Gly130+Glu-peptide	N	MS	Lys	Lys	Leu	Gly	Glu	Met	Trp	Asn	Vidmar et al., 2017
High mobility group protein B2	P26583		peptide-Lys90+Asp-peptide	N	MS	Gly	Lys	Lys	Lys	Asp	Pro	Asn	Ala	Vidmar et al., 2017
High mobility group protein B2	P26583		peptide-Gly130+Glu-peptide	N	MS	Lys	Lys	Leu	Gly	Glu	Met	Trp	Ser	Vidmar et al., 2017
High mobility group protein B2	P26583		peptide-Lys152+Glu-peptide	N	MS	Ala	Lys	Leu	Lys	Glu	Lys	Tyr	Glu	Vidmar et al., 2017
High mobility group protein HMG-I/HMG-Y	P17096		peptide-Arg30+Lys-peptide	N	MS	Gly	Arg	Pro	Arg	Lys	Gln	Pro	Pro	Vidmar et al., 2017
Histidine triad nucleotide-binding protein 1	P49773	8-21	Ala-Gln-Val-Ala11+Arg-Peptide	N	MS	Ala	Gln	Val	Ala	Arg	Pro	Gly	Gly	Biniossek et al., 2011
Histidine triad nucleotide-binding protein 1	P49773		peptide-His42+Asp-peptide	N	MS	Leu	Ala	Phe	His	Asp	Ile	Ser	Pro	Vidmar et al., 2017
Histidine triad nucleotide-binding protein 1	P49773		peptide-Arg24+Lys-peptide	N	MS	Lys	Ile	Ile	Arg	Lys	Glu	Ile	Pro	Vidmar et al., 2017
Histidine--tRNA ligase, cytoplasmic	P12081		peptide-Lys22+Gln-peptide	N	MS	Arg	Gly	Leu	Lys	Gln	Gln	Lys	Ala	Vidmar et al., 2017
Histidine--tRNA ligase, cytoplasmic	P12081		peptide-Lys25+Ala-peptide	N	MS	Lys	Gln	Gln	Lys	Ala	Ser	Ala	Glu	Vidmar et al., 2017
Histone H1.2	P16403	65-75	Ala-Leu-Ala67+Ala-Peptide	N	MS	-	Ala	Leu	Ala	Ala	Ala	Gly	Tyr	Biniossek et al., 2011
Histone H1.4	P10412		peptide-Lys85+Ser-peptide	N	MS	Leu	Gly	Leu	Lys	Ser	Leu	Val	Ser	Vidmar et al., 2017
Histone H1.4	P10412		peptide-Gln95+Thr-peptide	N	MS	Thr	Leu	Val	Gln	Thr	Lys	Gly	Thr	Vidmar et al., 2017
Histone H1.4	P10412		peptide-Ala67+Ala-peptide	N	MS	Lys	Ala	Leu	Ala	Ala	Ala	Gly	Tyr	Vidmar et al., 2017
Histone H2A type 1-C	Q93077		peptide-Gln85+Leu-peptide	N	MS	Arg	His	Leu	Gln	Leu	Ala	Ile	Arg	Vidmar et al., 2017
Histone H2A type 1-J	Q99878		peptide-Leu86+Ala-peptide	N	MS	His	Leu	Gln	Leu	Ala	Ile	Arg	Asn	Vidmar et al., 2017
Histone H2A type 1-J	Q99878		peptide-Thr102+Ile-peptide	N	MS	Gly	Lys	Val	Thr	Ile	Ala	Gln	Gly	Vidmar et al., 2017
Histone H2A type 1-J	Q99878		peptide-Gly99+Lys-peptide	N	MS	Lys	Leu	Leu	Gly	Lys	Val	Thr	Ile	Vidmar et al., 2017
Histone H2A type 1-J	Q99878		peptide-Gln25+Phe-peptide	N	MS	Ala	Gly	Leu	Gln	Phe	Pro	Val	Gly	Vidmar et al., 2017
Histone H2A type 1-J	Q99878		peptide-Ala87+Ile-peptide	N	MS	Leu	Gln	Leu	Ala	Ile	Arg	Asn	Asp	Vidmar et al., 2017
Histone H2A type 1-J	Q99878		peptide-Arg36+Lys-peptide	N	MS	Arg	Leu	Leu	Arg	Lys	Gly	Asn	Tyr	Vidmar et al., 2017
Histone H2A type 1-J	Q99878		peptide-Gln85+Leu-peptide	N	MS	Arg	His	Leu	Gln	Leu	Ala	Ile	Arg	Vidmar et al., 2017
Histone H2A type 1-J	Q99878		peptide-Glu65+Leu-peptide	N	MS	Glu	Ile	Leu	Glu	Leu	Ala	Gly	Asn	Vidmar et al., 2017
Histone H2A.V	Q71UI9		peptide-Glu68+Leu-peptide	N	MS	Glu	Val	Leu	Glu	Leu	Ala	Gly	Asn	Vidmar et al., 2017
Histone H2A.V	Q71UI9		peptide-Gln27+Phe-peptide	N	MS	Ala	Gly	Leu	Gln	Phe	Pro	Val	Gly	Vidmar et al., 2017
Histone H2A.V	Q71UI9		peptide-Lys102+Ala-peptide	N	MS	Ser	Leu	Ile	Lys	Ala	Thr	Ile	Ala	Vidmar et al., 2017
Histone H2A.V	Q71UI9		peptide-Gln88+Leu-peptide	N	MS	Arg	His	Leu	Gln	Leu	Ala	Ile	Arg	Vidmar et al., 2017
Histone H2A.V	Q71UI9		peptide-Ala90+Ile-peptide	N	MS	Leu	Gln	Leu	Ala	Ile	Arg	Gly	Asp	Vidmar et al., 2017
Histone H2B type 1-M	Q99879		peptide-Ala82+His-peptide	N	MS	Ser	Arg	Leu	Ala	His	Tyr	Asn	Lys	Vidmar et al., 2017
Histone H2B type 1-M	Q99879		peptide-Asn64+Ser-peptide	N	MS	Gly	Ile	Met	Asn	Ser	Phe	Val	Asn	Vidmar et al., 2017
Histone H2B type 1-M	Q99879		peptide-Leu102+Leu-peptide	N	MS	Val	Arg	Leu	Leu	Leu	Pro	Gly	Glu	Vidmar et al., 2017
Histone H2B type 1-M	Q99879		peptide-Ser113+Glu-peptide	N	MS	His	Ala	Val	Ser	Glu	Gly	Thr	Lys	Vidmar et al., 2017
Histone H2B type 1-M	Q99879		peptide-Met63+Asn-peptide	N	MS	Met	Gly	Ile	Met	Asn	Ser	Phe	Val	Vidmar et al., 2017
Histone H2B type 1-M	Q99879		peptide-Thr89+Ile-peptide	N	MS	Lys	Arg	Ser	Thr	Ile	Thr	Ser	Arg	Vidmar et al., 2017
Histone H2B type 1-M	Q99879		peptide-Lys47+Gln-peptide	N	MS	Lys	Val	Leu	Lys	Gln	Val	His	Pro	Vidmar et al., 2017
Histone H2B type 1-M	Q99879		peptide-Glu72+Arg-peptide	N	MS	Asp	Ile	Phe	Glu	Arg	Ile	Ala	Gly	Vidmar et al., 2017
Histone H2B type 1-M	Q99879		peptide-Thr91+Ser-peptide	N	MS	Ser	Thr	Ile	Thr	Ser	Arg	Glu	Ile	Vidmar et al., 2017
Histone H2B type 1-M	Q99879		peptide-Asn68+Asp-peptide	N	MS	Ser	Phe	Val	Asn	Asp	Ile	Phe	Glu	Vidmar et al., 2017
Histone H3.2	Q71DI3		peptide-Arg73+Glu-peptide	N	MS	Arg	Leu	Val	Arg	Glu	Ile	Ala	Gln	Vidmar et al., 2017
Histone H3.2	Q71DI3		peptide-Gln56+Lys-peptide	N	MS	Arg	Arg	Tyr	Gln	Lys	Ser	Thr	Glu	Vidmar et al., 2017
Histone H4	P62805		peptide-Arg24+Asp-peptide	N	MS	Lys	Val	Leu	Arg	Asp	Asn	Ile	Gln	Vidmar et al., 2017
Histone-arginine methyltransferase CARM1	Q86X55	551-578	Peptide-Gln561+Gly-Peptide	N	MS	Gly	Ile	Val	Gln	Gly	Ser	Ser	Gly	Biniossek et al., 2011
Histone-arginine methyltransferase CARM1	Q86X55	210-227	Peptide-Ala219+Gln-Peptide	N	MS	Ser	Thr	Met	Ala	Gln	His	Ala	Glu	Biniossek et al., 2011
Histone-arginine methyltransferase CARM1	Q86X55	551-578	Peptide-Gly562+Ser-Peptide	N	MS	Ile	Val	Gln	Gly	Ser	Ser	Gly	Ala	Biniossek et al., 2011
Histone-binding protein RBBP7	Q16576	59-79	Peptide-Leu67+Gly-Peptide	N	MS	Trp	Leu	Val	Leu	Gly	Thr	His	Thr	Biniossek et al., 2011
Histone-binding protein RBBP7	Q16576	59-82	Peptide-Gly68+Thr-Peptide	N	MS	Leu	Val	Leu	Gly	Thr	His	Thr	Ser	Biniossek et al., 2011
Histone-binding protein RBBP7	Q16576	83-105	Peptide-Asp93+Ala-Peptide	N	MS	Ala	Gln	Phe	Asp	Ala	Ser	His	Cys	Biniossek et al., 2011
HLA class I histocompatibility antigen, A-23 alpha chain	P30447		peptide-Glu256+Thr-peptide	N	MS	Glu	Leu	Val	Glu	Thr	Arg	Pro	Ala	Vidmar et al., 2017
HLA class I histocompatibility antigen, A-23 alpha chain	P30447		peptide-Arg59+Phe-peptide	N	MS	Gln	Phe	Val	Arg	Phe	Asp	Ser	Asp	Vidmar et al., 2017
HLA class I histocompatibility antigen, A-23 alpha chain	P30447		peptide-Ala269+Ala-peptide	N	MS	Gln	Lys	Trp	Ala	Ala	Val	Val	Val	Vidmar et al., 2017
HLA class I histocompatibility antigen, A-23 alpha chain	P30447		peptide-Arg68+Met-peptide	N	MS	Ala	Ser	Gln	Arg	Met	Glu	Pro	Arg	Vidmar et al., 2017
HLA class I histocompatibility antigen, A-23 alpha chain	P30447		peptide-Ala141+Tyr-peptide	N	MS	His	Gln	Tyr	Ala	Tyr	Asp	Gly	Lys	Vidmar et al., 2017
HLA class I histocompatibility antigen, A-23 alpha chain	P30447		peptide-Ala270+Val-peptide	N	MS	Lys	Trp	Ala	Ala	Val	Val	Val	Pro	Vidmar et al., 2017
HLA class I histocompatibility antigen, A-23 alpha chain	P30447		peptide-Thr240+Trp-peptide	N	MS	Ile	Thr	Leu	Thr	Trp	Gln	Arg	Asp	Vidmar et al., 2017
HLA class I histocompatibility antigen, A-23 alpha chain	P30447		peptide-Gly50+Tyr-peptide	N	MS	Ile	Ala	Val	Gly	Tyr	Val	Asp	Asp	Vidmar et al., 2017
HLA class I histocompatibility antigen, A-23 alpha chain	P30447		peptide-Gln286+His-peptide	N	MS	Cys	His	Val	Gln	His	Glu	Gly	Leu	Vidmar et al., 2017
HLA class I histocompatibility antigen, A-23 alpha chain	P30447		peptide-Ala48+Val-peptide	N	MS	Arg	Phe	Ile	Ala	Val	Gly	Tyr	Val	Vidmar et al., 2017
HLA class I histocompatibility antigen, A-69 alpha chain	P10316		peptide-Ala269+Ala-peptide	N	MS	Gln	Lys	Trp	Ala	Ala	Val	Val	Val	Vidmar et al., 2017
HLA class II histocompatibility antigen gamma chain	P04441	1-279	peptide-Pro86+Val-peptide	P		Ser	Ala	Lys	Pro	Val	Ser	Gln	Met	Villadangos et al., 1997
hLA class II histocompatibility antigen gamma chain	P04233	74-296	peptide-Thr82+Val-peptide	P	NT	Asp	Lys	Leu	Thr	Val	Thr	Ser	Gln	Ruckrich et al., 2006
hLA class II histocompatibility antigen gamma chain	P04233	74-296	peptide-Thr84+Ser-peptide	P	NT	Leu	Thr	Val	Thr	Ser	Gln	Asn	Leu	Ruckrich et al., 2006
hLA class II histocompatibility antigen gamma chain	P04233	74-296	peptide-Arg94+Met-peptide	P	NT	Glu	Asn	Leu	Arg	Met	Lys	Leu	Pro	Ruckrich et al., 2006
hLA class II histocompatibility antigen gamma chain	P04233	74-296	peptide-Lys96+Leu-peptide	P	NT	Leu	Arg	Met	Lys	Leu	Pro	Lys	Pro	Ruckrich et al., 2006
hLA class II histocompatibility antigen gamma chain	P04233	74-296	peptide-Arg108+Met-peptide	P	NT	Ser	Lys	Met	Arg	Met	Ala	Thr	Pro	Ruckrich et al., 2006
hLA class II histocompatibility antigen gamma chain	P04233	74-296	peptide-Ala110+Thr-peptide	P	NT	Met	Arg	Met	Ala	Thr	Pro	Leu	Leu	Ruckrich et al., 2006
hLA class II histocompatibility antigen gamma chain	P04233	74-296	peptide-Gln116+Ala-peptide	P	NT	Leu	Leu	Met	Gln	Ala	Leu	Pro	Met	Ruckrich et al., 2006
hLA class II histocompatibility antigen gamma chain	P04233	74-296	peptide-Gly121+Ala-peptide	P	NT	Leu	Pro	Met	Gly	Ala	Leu	Pro	Gln	Ruckrich et al., 2006
hLA class II histocompatibility antigen gamma chain	P04233	74-296	peptide-Gln129+Asn-peptide	P	NT	Gly	Pro	Met	Gln	Asn	Ala	Thr	Lys	Ruckrich et al., 2006
hLA class II histocompatibility antigen gamma chain	P04233	74-296	peptide-Lys159+Gly-peptide	P	NT	Pro	Pro	Leu	Lys	Gly	Ser	Phe	Pro	Ruckrich et al., 2006
hLA class II histocompatibility antigen gamma chain	P04233	74-296	peptide-Lys170+Asn-peptide	P	NT	Arg	His	Leu	Lys	Asn	Thr	Met	Glu	Ruckrich et al., 2006
hLA class II histocompatibility antigen gamma chain	P04233	74-296	peptide-Glu199+Gln-peptide	P	NT	His	Ser	Leu	Glu	Gln	Lys	Pro	Thr	Ruckrich et al., 2006
hLA class II histocompatibility antigen gamma chain	P04233	79-117	peptide-Thr84+Ser-peptide	P	NT	Leu	Thr	Val	Thr	Ser	Gln	Asn	Leu	Ruckrich et al., 2006
hLA class II histocompatibility antigen gamma chain	P04233	79-117	peptide-Arg94+Met-peptide	P	NT	Glu	Asn	Leu	Arg	Met	Lys	Leu	Pro	Ruckrich et al., 2006
hLA class II histocompatibility antigen gamma chain	P04233	79-117	peptide-Lys96+Leu-peptide	P	NT	Leu	Arg	Met	Lys	Leu	Pro	Lys	Pro	Ruckrich et al., 2006
hLA class II histocompatibility antigen gamma chain	P04233	79-117	peptide-Arg108+Met-peptide	P	NT	Ser	Lys	Met	Arg	Met	Ala	Thr	Pro	Ruckrich et al., 2006
hLA class II histocompatibility antigen gamma chain	P04233	79-117	peptide-Ala110+Thr-peptide	P	NT	Met	Arg	Met	Ala	Thr	Pro	Leu	Leu	Ruckrich et al., 2006
hLA class II histocompatibility antigen gamma chain	P04233	93-121	peptide-Lys96+Leu-peptide	P	NT	Leu	Arg	Met	Lys	Leu	Pro	Lys	Pro	Ruckrich et al., 2006
hLA class II histocompatibility antigen gamma chain	P04233	93-121	peptide-Arg108+Met-peptide	P	NT	Ser	Lys	Met	Arg	Met	Ala	Thr	Pro	Ruckrich et al., 2006
hLA class II histocompatibility antigen gamma chain	P04233	93-121	peptide-Ala110+Thr-peptide	P	NT	Met	Arg	Met	Ala	Thr	Pro	Leu	Leu	Ruckrich et al., 2006
hLA class II histocompatibility antigen gamma chain	P04233	93-121	peptide-Leu114+Met-peptide	P	NT	Thr	Pro	Leu	Leu	Met	Gln	Ala	Leu	Ruckrich et al., 2006
hLA class II histocompatibility antigen gamma chain	P04233	93-121	peptide-Gln116+Ala-peptide	P	NT	Leu	Leu	Met	Gln	Ala	Leu	Pro	Met	Ruckrich et al., 2006
Host cell factor 1	P51610	1775-1803	Peptide-Gly1792+Val-Peptide	N	MS	Glu	Ser	Leu	Gly	Val	Lys	Pro	Asp	Biniossek et al., 2011
Hsc70-interacting protein	P50502	194-206	Leu-Leu-Gly196+His-Peptide	N	MS	-	Leu	Leu	Gly	His	Trp	Glu	Glu	Biniossek et al., 2011
Hsp90 co-chaperone Cdc37	Q16543	127-144	Ser-Met-Val-Asn130+Thr-Peptide	N	MS	Ser	Met	Val	Asn	Thr	Lys	Pro	Glu	Biniossek et al., 2011
Hsp90 co-chaperone Cdc37	Q16543		peptide-Trp342+Val-peptide	N	MS	Ser	Gly	Leu	Trp	Val	Pro	Asn	Ser	Vidmar et al., 2017
Hsp90 co-chaperone Cdc37	Q16543		peptide-Glu365+Ala-peptide	N	MS	Pro	Leu	Leu	Glu	Ala	Val	Pro	Lys	Vidmar et al., 2017
Hsp90 co-chaperone Cdc37	Q16543		peptide-Lys323+Met-peptide	N	MS	Ala	Ile	Ser	Lys	Met	Asp	Pro	Thr	Vidmar et al., 2017
Hsp90 co-chaperone Cdc37	Q16543		peptide-Glu72+Val-peptide	N	MS	Lys	Glu	Leu	Glu	Val	Ala	Glu	Gly	Vidmar et al., 2017
Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial	Q16836	272-287	Peptide-Asp275+Gly-Peptide	N	MS	Phe	Ile	Val	Asp	Gly	Trp	His	Glu	Biniossek et al., 2011
Hypoxia up-regulated protein 1	Q9Y4L1		peptide-Leu706+Asp-peptide	N	MS	Leu	Val	Val	Leu	Asp	Leu	Pro	Asp	Vidmar et al., 2017
Hypoxia up-regulated protein 1	Q9Y4L1		peptide-Thr727+Leu-peptide	N	MS	Gln	Asp	Leu	Thr	Leu	Arg	Asp	Leu	Vidmar et al., 2017
Importin subunit alpha-1	P52294	399-417	Peptide-Asn406+Ala-Peptide	N	MS	Ala	Ile	Thr	Asn	Ala	Thr	Ser	Gly	Biniossek et al., 2011
Importin subunit alpha-1	P52292		peptide-Leu104+Ser-peptide	N	MS	Arg	Lys	Leu	Leu	Ser	Arg	Glu	Lys	Vidmar et al., 2017
Importin subunit alpha-1	P52292		peptide-Lys18+Asn-peptide	N	MS	His	Arg	Phe	Lys	Asn	Lys	Gly	Lys	Vidmar et al., 2017
Importin subunit alpha-1	P52292		peptide-Lys291+Thr-peptide	N	MS	Met	Val	Val	Lys	Thr	Gly	Val	Val	Vidmar et al., 2017
Importin subunit alpha-1	P52292		peptide-Gly303+Ala-peptide	N	MS	Lys	Leu	Leu	Gly	Ala	Ser	Glu	Leu	Vidmar et al., 2017
Importin subunit alpha-4	O00629	462-475	Peptide-Gln466+Asn-Peptide	N	MS	Glu	Gln	Leu	Gln	Asn	His	Glu	Asn	Biniossek et al., 2011
Importin subunit alpha-7	O60684	478-493	Peptide-Leu482+Gln-Peptide	N	MS	Ile	Glu	Phe	Leu	Gln	Ser	His	Glu	Biniossek et al., 2011
Importin subunit alpha-7	O60684	479-493	Peptide-Gln483+Ser-Peptide	N	MS	Glu	Phe	Leu	Gln	Ser	His	Glu	Asn	Biniossek et al., 2011
Importin subunit beta-1	Q14974	680-707	Peptide-Glu698+Asn-Peptide	N	MS	Leu	Leu	Leu	Glu	Asn	Leu	Gly	Asn	Biniossek et al., 2011
Importin subunit beta-1	Q14974	106-147	Peptide-Thr138+Asn-Peptide	N	MS	Ala	Asn	Val	Thr	Asn	Pro	Asn	Ser	Biniossek et al., 2011
Importin subunit beta-1	Q14974	731-749	Peptide-Gln740+Gln-Peptide	N	MS	Asn	Thr	Leu	Gln	Gln	Ala	Ser	Gln	Biniossek et al., 2011
Importin subunit beta-1	Q14974	510-525	Leu-Leu-Glu512+Thr-Peptide	N	MS	-	Leu	Leu	Glu	Thr	Thr	Asp	Arg	Biniossek et al., 2011
Importin-4	Q8TEX9	136-156	Peptide-Thr147+Ser-Peptide	N	MS	Val	Val	Val	Thr	Ser	Arg	Pro	Glu	Biniossek et al., 2011
Importin-5	O00410	176-190	Met-Leu-Val-Gln179+Cys-Peptide	N	MS	Met	Leu	Val	Gln	Cys	Met	Gln	Asp	Biniossek et al., 2011
Importin-7	O95373	725-740	Val-Leu-Thr727+Gly-Peptide	N	MS	-	Val	Leu	Thr	Gly	Val	Ala	Gly	Biniossek et al., 2011
Inorganic pyrophosphatase	Q15181	89-109	Peptide-Gly95+Ala-Peptide	N	MS	Trp	Asn	Tyr	Gly	Ala	Ile	Pro	Gln	Biniossek et al., 2011
Inorganic pyrophosphatase	Q15181		peptide-Glu184+Ala-peptide	N	MS	Gly	Tyr	Leu	Glu	Ala	Thr	Val	Asp	Vidmar et al., 2017
Inorganic pyrophosphatase	Q15181		peptide-Lys253+Cys-peptide	N	MS	Ser	Pro	Phe	Lys	Cys	Asp	Pro	Asp	Vidmar et al., 2017
Inorganic pyrophosphatase	Q15181		peptide-His33+Asp-peptide	N	MS	Ser	Pro	Phe	His	Asp	Ile	Pro	Ile	Vidmar et al., 2017
Inorganic pyrophosphatase	Q15181		peptide-Glu59+Ile-peptide	N	MS	Ala	Lys	Met	Glu	Ile	Ala	Thr	Lys	Vidmar et al., 2017
Inorganic pyrophosphatase	Q15181		peptide-Val48+Glu-peptide	N	MS	His	Met	Val	Val	Glu	Val	Pro	Arg	Vidmar et al., 2017
Inorganic pyrophosphatase	Q15181		peptide-Thr275+Val-peptide	N	MS	Ser	Ala	Cys	Thr	Val	Pro	Thr	Asp	Vidmar et al., 2017
Inorganic pyrophosphatase	Q15181		peptide-Cys130+Ala-peptide	N	MS	Ser	Lys	Val	Cys	Ala	Arg	Gly	Glu	Vidmar et al., 2017
Inorganic pyrophosphatase 2, mitochondrial	Q9H2U2	177-187	IIe-Leu-Ser179+Cys-Peptide	N	MS	-	Ile	Leu	Ser	Cys	Gly	Glu	Val	Biniossek et al., 2011
Inosine-5'-monophosphate dehydrogenase 2	P12268	243-257	Gln-Leu-Leu-Cys246+Gly-Peptide	N	MS	Gln	Leu	Leu	Cys	Gly	Ala	Ala	Ile	Biniossek et al., 2011
Inosine-5'-monophosphate dehydrogenase 2	P12268	1-19	Peptide-Ser7+Gly-Peptide	N	MS	Tyr	Leu	Ile	Ser	Gly	Gly	Thr	Ser	Biniossek et al., 2011
Inosine-5'-monophosphate dehydrogenase 2	P12268	456-474	Peptide-Gly463+IIe-Peptide	N	MS	Leu	Ile	Ala	Gly	Ile	Gln	His	Ser	Biniossek et al., 2011
insulin B-chain (oxidized)	P01317	25-54	Phe-Val-Asn+Gln-His-Leu-Cya-Gly-Ser-His-Leu-Val-Glu-Ala-Leu-Tyr-Leu-Val-Cya-Gly-Glu-Arg-Gly-Phe-Phe-Tyr-Thr-Pro-Lys-Ala	N	NT	-	Phe	Val	Asn	Gln	His	Leu	Cya	Bromme et al., 1989
insulin B-chain (oxidized)	P01317	25-54	Phe-Val-Asn-Gln-His-Leu-Cya-Gly-Ser+His-Leu-Val-Glu-Ala-Leu-Tyr-Leu-Val-Cya-Gly-Glu-Arg-Gly-Phe-Phe-Tyr-Thr-Pro-Lys-Ala	N	NT	Leu	Cya	Gly	Ser	His	Leu	Val	Glu	Bromme et al., 1989
insulin B-chain (oxidized)	P01317	25-54	Phe-Val-Asn-Gln-His-Leu-Cya-Gly-Ser-His-Leu-Val-Glu+Ala-Leu-Tyr-Leu-Val-Cya-Gly-Glu-Arg-Gly-Phe-Phe-Tyr-Thr-Pro-Lys-Ala	N	NT	His	Leu	Val	Glu	Ala	Leu	Tyr	Leu	Bromme et al., 1989
insulin B-chain (oxidized)	P01317	25-54	Phe-Val-Asn-Gln-His-Leu-Cya-Gly-Ser-His-Leu-Val-Glu-Ala-Leu+Tyr-Leu-Val-Cya-Gly-Glu-Arg-Gly-Phe-Phe-Tyr-Thr-Pro-Lys-Ala	N	NT	Val	Glu	Ala	Leu	Tyr	Leu	Val	Cya	Bromme et al., 1989
insulin B-chain (oxidized)	P01317	25-54	Phe-Val-Asn-Gln-His-Leu-Cya-Gly-Ser-His-Leu-Val-Glu-Ala-Leu-Tyr-Leu+Val-Cya-Gly-Glu-Arg-Gly-Phe-Phe-Tyr-Thr-Pro-Lys-Ala	N	NT	Ala	Leu	Tyr	Leu	Val	Cya	Gly	Glu	Bromme et al., 1989
insulin B-chain (oxidized)	P01317	25-54	Phe-Val-Asn-Gln-His-Leu-Cya-Gly-Ser-His-Leu-Val-Glu-Ala-Leu-Tyr-Leu-Val-Cya-Gly-Glu-Arg-Gly-Phe-Phe+Tyr-Thr-Pro-Lys-Ala	N	NT	Arg	Gly	Phe	Phe	Tyr	Thr	Pro	Lys	Bromme et al., 1989
Insulin-like growth factor 2 mRNA-binding protein 1	Q9NZI8	37-52	Peptide-Asp43+Cys-Peptide	N	MS	Ala	Phe	Val	Asp	Cys	Pro	Asp	Glu	Biniossek et al., 2011
Insulin-like growth factor 2 mRNA-binding protein 3	O00425	453-465	Peptide-Thr457+Gly-Peptide	N	MS	Val	Ile	Ile	Thr	Gly	Pro	Pro	Glu	Biniossek et al., 2011
Insulin-like growth factor 2 mRNA-binding protein 3	O00425	243-258	Peptide-Leu247+Ser-Peptide	N	MS	Ile	Thr	Ile	Leu	Ser	Thr	Pro	Glu	Biniossek et al., 2011
Integrin alpha-2	P17301		peptide-Gln53+Gln-peptide	N	MS	Tyr	Ala	Val	Gln	Gln	Phe	Ile	Asn	Vidmar et al., 2017
Integrin alpha-2	P17301		peptide-Tyr1005+Leu-peptide	N	MS	Pro	Leu	Met	Tyr	Leu	Thr	Gly	Val	Vidmar et al., 2017
Integrin alpha-2	P17301		peptide-Gly33+Leu-peptide	N	MS	Tyr	Asn	Val	Gly	Leu	Pro	Glu	Ala	Vidmar et al., 2017
Integrin alpha-2	P17301		peptide-Gly66+Ser-peptide	N	MS	Leu	Leu	Val	Gly	Ser	Pro	Trp	Ser	Vidmar et al., 2017
Integrin alpha-2	P17301		peptide-Leu543+Glu-peptide	N	MS	His	Gln	Phe	Leu	Glu	Gly	Pro	Glu	Vidmar et al., 2017
Integrin alpha-3	P26006		peptide-Arg562+Asp-peptide	N	MS	Asp	Asn	Leu	Arg	Asp	Lys	Leu	Arg	Vidmar et al., 2017
Integrin beta-1	P05556		peptide-Gly185+Ser-peptide	N	MS	Ile	Gly	Phe	Gly	Ser	Phe	Val	Glu	Vidmar et al., 2017
Integrin beta-1	P05556		peptide-Cys538+Arg-peptide	N	MS	Gln	Cys	Val	Cys	Arg	Lys	Arg	Asp	Vidmar et al., 2017
Integrin beta-1	P05556		peptide-Thr788+Thr-peptide	N	MS	Ser	Ala	Val	Thr	Thr	Val	Val	Asn	Vidmar et al., 2017
Integrin beta-1	P05556		peptide-Glu674+Ser-peptide	N	MS	Thr	Lys	Val	Glu	Ser	Arg	Asp	Lys	Vidmar et al., 2017
Integrin beta-1	P05556		peptide-Asn772+Ala-peptide	N	MS	Glu	Lys	Met	Asn	Ala	Lys	Trp	Asp	Vidmar et al., 2017
Integrin-linked protein kinase	Q13418		peptide-Gln258+Ser-peptide	N	MS	Gly	Ala	Cys	Gln	Ser	Pro	Pro	Ala	Vidmar et al., 2017
Interferon regulatory factor 2-binding protein 2	Q7Z5L9	237-252	Peptide-Ser242+Ser-Peptide	N	MS	Ala	Ser	Val	Ser	Ser	Ser	Ala	Ala	Biniossek et al., 2011
Interferon-induced transmembrane protein 2	Q01629		peptide-Asn12+Ser-peptide	N	MS	Ser	Pro	Val	Asn	Ser	Gly	Gln	Pro	Vidmar et al., 2017
Interleukin enhancer-binding factor 2	Q12905		peptide-Gly14+Ser-peptide	N	MS	Gly	Arg	Phe	Gly	Ser	Arg	Gly	Gly	Vidmar et al., 2017
Interleukin enhancer-binding factor 2	Q12905		peptide-Glu38+Met-peptide	N	MS	Tyr	Leu	Cys	Glu	Met	Ala	Phe	Pro	Vidmar et al., 2017
Interleukin enhancer-binding factor 2	Q12905		peptide-Lys59+Arg-peptide	N	MS	Ala	Leu	Leu	Lys	Arg	Asn	Gln	Asp	Vidmar et al., 2017
Interleukin enhancer-binding factor 3	Q12906	144-158	Peptide-Gln148+Ser-Peptide	N	MS	Glu	Ile	Leu	Gln	Ser	Val	Asp	Asp	Biniossek et al., 2011
interleukin-6 receptor subunit alpha	P08887	20-468	peptide-Pro355+Val-peptide	P	NT	Thr	Ser	Leu	Pro	Val	Gln	Asp	Ser	Flynn et al., 2020
Inverted formin-2	Q27J81		peptide-Gln361+Ala-peptide	N	MS	Lys	Ser	Val	Gln	Ala	Asn	Leu	Asp	Vidmar et al., 2017
Inverted formin-2	Q27J81		peptide-Ser588+Ser-peptide	N	MS	Ala	Ser	Leu	Ser	Ser	Pro	Asp	Ala	Vidmar et al., 2017
Isocitrate dehydrogenase [NADP], mitochondrial	P48735	341-353	Thr-IIe-Glu343+Ala-Peptide	N	MS	-	Thr	Ile	Glu	Ala	Glu	Ala	Ala	Biniossek et al., 2011
Isoleucine--tRNA ligase, mitochondrial	Q9NSE4	541-555	Peptide-Asn546+Ser-Peptide	N	MS	Tyr	Leu	Ile	Asn	Ser	Gln	Thr	Thr	Biniossek et al., 2011
Isoleucine--tRNA ligase, mitochondrial	Q9NSE4	251-267	Peptide-Glu259+Tyr-Peptide	N	MS	Ala	Glu	Leu	Glu	Tyr	Asn	Pro	Glu	Biniossek et al., 2011
Isopentenyl-diphosphate Delta-isomerase 1	Q13907	170-180	Ser-Tyr-Cys172+Tyr-Peptide	N	MS	-	Ser	Tyr	Cys	Tyr	Val	Ser	Lys	Biniossek et al., 2011
Jupiter microtubule associated homolog 1	Q9UK76		peptide-Gly117+Gln-peptide	N	MS	Gly	Ser	Leu	Gly	Gln	Ser	Glu	Glu	Vidmar et al., 2017
Keratin, type I cytoskeletal 18	P05783		peptide-Gln334+Met-peptide	N	MS	Tyr	Ala	Leu	Gln	Met	Glu	Gln	Leu	Vidmar et al., 2017
Keratin, type I cytoskeletal 18	P05783		peptide-Glu307+Ile-peptide	N	MS	Gln	Ser	Leu	Glu	Ile	Asp	Leu	Asp	Vidmar et al., 2017
Keratin, type I cytoskeletal 18	P05783		peptide-Arg186+Lys-peptide	N	MS	His	Gly	Leu	Arg	Lys	Val	Ile	Asp	Vidmar et al., 2017
Keratin, type I cytoskeletal 18	P05783		peptide-Arg124+Asp-peptide	N	MS	Pro	Gln	Val	Arg	Asp	Trp	Ser	His	Vidmar et al., 2017
Keratin, type I cytoskeletal 18	P05783		peptide-Ala92+Ser-peptide	N	MS	Asp	Arg	Leu	Ala	Ser	Tyr	Leu	Asp	Vidmar et al., 2017
Keratin, type I cytoskeletal 18	P05783		peptide-Tyr36+Ala-peptide	N	MS	Ala	Ser	Val	Tyr	Ala	Gly	Ala	Gly	Vidmar et al., 2017
Keratin, type I cytoskeletal 18	P05783		peptide-Gln198+Leu-peptide	N	MS	Thr	Arg	Leu	Gln	Leu	Glu	Thr	Glu	Vidmar et al., 2017
Keratin, type I cytoskeletal 18	P05783		peptide-Lys207+Glu-peptide	N	MS	Glu	Ala	Leu	Lys	Glu	Glu	Leu	Leu	Vidmar et al., 2017
Keratin, type I cytoskeletal 18	P05783		peptide-Lys317+Ala-peptide	N	MS	Arg	Asn	Leu	Lys	Ala	Ser	Leu	Glu	Vidmar et al., 2017
Keratin, type I cytoskeletal 18	P05783		peptide-Gly290+Ala-peptide	N	MS	Ala	Glu	Val	Gly	Ala	Ala	Glu	Thr	Vidmar et al., 2017
Keratin, type I cytoskeletal 18	P05783		peptide-Arg175+Gln-peptide	N	MS	Leu	Ala	Met	Arg	Gln	Ser	Val	Glu	Vidmar et al., 2017
Kinectin	Q86UP2		peptide-Lys880+Ala-peptide	N	MS	Asn	Thr	Met	Lys	Ala	Val	Leu	Glu	Vidmar et al., 2017
Kinectin	Q86UP2		peptide-Gln501+Ser-peptide	N	MS	Glu	Glu	Val	Gln	Ser	Tyr	Ile	Arg	Vidmar et al., 2017
Kinesin light chain 3	Q6P597	359-376	Peptide-Gly367+Gly-Peptide	N	MS	Glu	Ala	Leu	Gly	Gly	Pro	His	Asp	Biniossek et al., 2011
L-lactate dehydrogenase A chain	P00338	246-265	Peptide-Ser255+Val-Peptide	N	MS	Ile	Gly	Leu	Ser	Val	Ala	Asp	Leu	Biniossek et al., 2011
L-lactate dehydrogenase A chain	P00338		peptide-Leu40+Met-peptide	N	MS	Ile	Ser	Ile	Leu	Met	Lys	Asp	Leu	Vidmar et al., 2017
L-lactate dehydrogenase A chain	P00338		peptide-Gly160+Ser-peptide	N	MS	Arg	Val	Ile	Gly	Ser	Gly	Cys	Asn	Vidmar et al., 2017
L-lactate dehydrogenase A chain	P00338		peptide-Gly253+Leu-peptide	N	MS	Trp	Ala	Ile	Gly	Leu	Ser	Val	Ala	Vidmar et al., 2017
L-lactate dehydrogenase A chain	P00338		peptide-Glu236+Ser-peptide	N	MS	Gln	Val	Val	Glu	Ser	Ala	Tyr	Glu	Vidmar et al., 2017
L-lactate dehydrogenase A chain	P00338		peptide-Lys317+Lys-peptide	N	MS	Ala	Arg	Leu	Lys	Lys	Ser	Ala	Asp	Vidmar et al., 2017
L-lactate dehydrogenase A chain	P00338		peptide-Gly296+Gln-peptide	N	MS	Cys	Ile	Leu	Gly	Gln	Asn	Gly	Ile	Vidmar et al., 2017
L-lactate dehydrogenase A chain	P00338		peptide-Lys14+Glu-peptide	N	MS	Asn	Leu	Leu	Lys	Glu	Glu	Gln	Thr	Vidmar et al., 2017
L-lactate dehydrogenase A chain	P00338		peptide-Lys42+Asp-peptide	N	MS	Ile	Leu	Met	Lys	Asp	Leu	Ala	Asp	Vidmar et al., 2017
L-lactate dehydrogenase A chain	P00338		peptide-Asn164+Leu-peptide	N	MS	Ser	Gly	Cys	Asn	Leu	Asp	Ser	Ala	Vidmar et al., 2017
L-lactate dehydrogenase A chain	P00338		peptide-Gly191+Glu-peptide	N	MS	Trp	Val	Leu	Gly	Glu	His	Gly	Asp	Vidmar et al., 2017
L-lactate dehydrogenase A chain	P00338		peptide-Met41+Lys-peptide	N	MS	Ser	Ile	Leu	Met	Lys	Asp	Leu	Ala	Vidmar et al., 2017
L-lactate dehydrogenase A chain	P00338		peptide-Lys118+Phe-peptide	N	MS	Asn	Ile	Phe	Lys	Phe	Ile	Ile	Pro	Vidmar et al., 2017
L-lactate dehydrogenase A chain	P00338		peptide-Lys5+Asp-peptide	N	MS	Ala	Thr	Leu	Lys	Asp	Gln	Leu	Ile	Vidmar et al., 2017
L-lactate dehydrogenase A chain	P00338		peptide-Thr307+Leu-peptide	N	MS	Val	Lys	Val	Thr	Leu	Thr	Ser	Glu	Vidmar et al., 2017
L-lactate dehydrogenase A chain	P00338		peptide-Thr86+Ala-peptide	N	MS	Tyr	Asn	Val	Thr	Ala	Asn	Ser	Lys	Vidmar et al., 2017
L-lactate dehydrogenase B chain	P07195	179-229	Peptide-Gln213+Glu-Peptide	N	MS	Val	Ser	Leu	Gln	Glu	Leu	Asn	Pro	Biniossek et al., 2011
L-lactate dehydrogenase B chain	P07195		peptide-Gly42+Lys-peptide	N	MS	Ser	Ile	Leu	Gly	Lys	Ser	Leu	Ala	Vidmar et al., 2017
L-lactate dehydrogenase B chain	P07195		peptide-Ile9+Ala-peptide	N	MS	Glu	Lys	Leu	Ile	Ala	Pro	Val	Ala	Vidmar et al., 2017
L-lactate dehydrogenase B chain	P07195		peptide-Ala13+Glu-peptide	N	MS	Ala	Pro	Val	Ala	Glu	Glu	Glu	Ala	Vidmar et al., 2017
L-lactate dehydrogenase B chain	P07195		peptide-Ala50+Leu-peptide	N	MS	Asp	Glu	Leu	Ala	Leu	Val	Asp	Val	Vidmar et al., 2017
L-lactate dehydrogenase B chain	P07195		peptide-Lys318+Lys-peptide	N	MS	Ala	Gln	Leu	Lys	Lys	Ser	Ala	Asp	Vidmar et al., 2017
L-lactate dehydrogenase B chain	P07195		peptide-Thr87+Ala-peptide	N	MS	Tyr	Ser	Val	Thr	Ala	Asn	Ser	Lys	Vidmar et al., 2017
L-lactate dehydrogenase B chain	P07195		peptide-Gly254+Leu-peptide	N	MS	Trp	Ala	Ile	Gly	Leu	Ser	Val	Ala	Vidmar et al., 2017
L-lactate dehydrogenase B chain	P07195		peptide-Gly192+Glu-peptide	N	MS	Trp	Ile	Leu	Gly	Glu	His	Gly	Asp	Vidmar et al., 2017
L-lactate dehydrogenase B chain	P07195		peptide-Thr302+Ser-peptide	N	MS	Arg	Gly	Leu	Thr	Ser	Val	Ile	Asn	Vidmar et al., 2017
L-lactate dehydrogenase C chain	P07864	158-169	Val-IIe-Gly160+Ser-Peptide	N	MS	-	Val	Ile	Gly	Ser	Gly	Cys	Asn	Biniossek et al., 2011
L-xylulose reductase	Q7Z4W1	174-196	Peptide-Gly187+Gln-Peptide	N	MS	Thr	Ser	Met	Gly	Gln	Ala	Thr	Trp	Biniossek et al., 2011
La-related protein 1	Q6PKG0	130-152	Peptide-Asn140+Gly-Peptide	N	MS	Thr	Thr	Val	Asn	Gly	Gln	Ser	Pro	Biniossek et al., 2011
Lactoylglutathione lyase	Q04760	2-28	Peptide-Ser18+Cys-Peptide	N	MS	Ala	Ala	Leu	Ser	Cys	Cys	Ser	Asp	Biniossek et al., 2011
Lactoylglutathione lyase	Q04760	97-115	Peptide-Thr102+His-Peptide	N	MS	Leu	Glu	Leu	Thr	His	Asn	Trp	Gly	Biniossek et al., 2011
Lactoylglutathione lyase	Q04760		peptide-Ala162+Phe-peptide	N	MS	Lys	Gly	Leu	Ala	Phe	Ile	Gln	Asp	Vidmar et al., 2017
Lactoylglutathione lyase	Q04760		peptide-Ile164+Gln-peptide	N	MS	Leu	Ala	Phe	Ile	Gln	Asp	Pro	Asp	Vidmar et al., 2017
Lactoylglutathione lyase	Q04760		peptide-Cys20+Ser-peptide	N	MS	Leu	Ser	Cys	Cys	Ser	Asp	Ala	Asp	Vidmar et al., 2017
Lactoylglutathione lyase	Q04760		peptide-Ser21+Asp-peptide	N	MS	Ser	Cys	Cys	Ser	Asp	Ala	Asp	Pro	Vidmar et al., 2017
Lactoylglutathione lyase	Q04760		peptide-Gln59+Lys-peptide	N	MS	Thr	Leu	Ile	Gln	Lys	Cys	Asp	Phe	Vidmar et al., 2017
Lactoylglutathione lyase	Q04760		peptide-Gln165+Asp-peptide	N	MS	Ala	Phe	Ile	Gln	Asp	Pro	Asp	Gly	Vidmar et al., 2017
Lamina-associated polypeptide 2, isoforms beta/gamma	P42167		peptide-Leu5+Glu-peptide	N	MS	Pro	Glu	Phe	Leu	Glu	Asp	Pro	Ser	Vidmar et al., 2017
Lamina-associated polypeptide 2, isoforms beta/gamma	P42167		peptide-Thr26+Leu-peptide	N	MS	Asn	Asn	Val	Thr	Leu	Pro	Ala	Gly	Vidmar et al., 2017
Lamina-associated polypeptide 2, isoforms beta/gamma	P42167		peptide-Ala287+Ser-peptide	N	MS	Thr	Ile	Met	Ala	Ser	Ser	Asn	Glu	Vidmar et al., 2017
Large neutral amino acids transporter small subunit 1	Q01650		peptide-Ala12+Ala-peptide	N	MS	Arg	Ala	Leu	Ala	Ala	Pro	Ala	Ala	Vidmar et al., 2017
Leucine-rich repeat-containing protein 59	Q96AG4		peptide-Gln75+Gln-peptide	N	MS	Asn	Lys	Leu	Gln	Gln	Leu	Pro	Ala	Vidmar et al., 2017
Leucine-rich repeat-containing protein 59	Q96AG4		peptide-Lys66+Leu-peptide	N	MS	His	Leu	Val	Lys	Leu	Asp	Leu	Ser	Vidmar et al., 2017
Leucine-rich repeat-containing protein 59	Q96AG4		peptide-Asn281+Thr-peptide	N	MS	Thr	Ser	Val	Asn	Thr	Ile	Tyr	Asp	Vidmar et al., 2017
Leukocyte elastase inhibitor	P30740		peptide-Tyr93+Gly-peptide	N	MS	Asn	Arg	Leu	Tyr	Gly	Glu	Lys	Thr	Vidmar et al., 2017
Leukocyte elastase inhibitor	P30740		peptide-Leu231+Leu-peptide	N	MS	Met	Val	Ile	Leu	Leu	Pro	Asp	Asp	Vidmar et al., 2017
Leukotriene A-4 hydrolase	P09960	356-365	Thr-Phe-Gly358+Glu-Peptide	N	MS	'-'	Thr	Phe	Gly	Glu	Thr	His	Pro	Biniossek et al., 2011
LIM and SH3 domain protein 1	Q14847		peptide-Ala66+Asp-peptide	N	MS	Thr	Met	Val	Ala	Asp	Thr	Pro	Glu	Vidmar et al., 2017
Lupus La protein	P05455		peptide-Arg206+Ala-peptide	N	MS	Ala	Lys	Leu	Arg	Ala	Lys	Gln	Glu	Vidmar et al., 2017
Lupus La protein	P05455		peptide-Lys316+Lys-peptide	N	MS	Glu	Ala	Leu	Lys	Lys	Ile	Ile	Glu	Vidmar et al., 2017
Lupus La protein	P05455		peptide-Arg90+Arg-peptide	N	MS	Thr	Lys	Ile	Arg	Arg	Ser	Pro	Ser	Vidmar et al., 2017
Lupus La protein	P05455		peptide-Arg266+Gly-peptide	N	MS	Asp	Phe	Val	Arg	Gly	Ala	Lys	Glu	Vidmar et al., 2017
Lupus La protein	P05455		peptide-Thr101+Asp-peptide	N	MS	Pro	Glu	Val	Thr	Asp	Glu	Tyr	Lys	Vidmar et al., 2017
Lupus La protein	P05455		peptide-Lys235+Phe-peptide	N	MS	Cys	Leu	Leu	Lys	Phe	Ser	Gly	Asp	Vidmar et al., 2017
Lysine-specific demethylase 5B	Q9UGL1		peptide-Leu685+Pro-peptide	N	MS	Phe	Glu	Leu	Leu	Pro	Asp	Asp	Glu	Vidmar et al., 2017
MACRO domain-containing protein 1	Q9BQ69	164-189	Peptide-Gly179+Gly-Peptide	N	MS	Ser	Leu	Leu	Gly	Gly	Gly	Gly	Val	Biniossek et al., 2011
Macrophage migration inhibitory factor	P14174	13-41	Peptide-Gln29+Ala-Peptide	N	MS	Gln	Leu	Ala	Gln	Ala	Thr	Gly	Lys	Biniossek et al., 2011
Macrophage migration inhibitory factor	P14174	34-60	Peptide-Ala49+Phe-Peptide	N	MS	Gln	Leu	Met	Ala	Phe	Gly	Gly	Ser	Biniossek et al., 2011
Macrophage migration inhibitory factor	P14174	13-41	Peptide-Thr31+Gly-Peptide	N	MS	Ala	Gln	Ala	Thr	Gly	Lys	Pro	Pro	Biniossek et al., 2011
Macrophage migration inhibitory factor	P14174	13-41	Peptide-Gly32+Lys-Peptide	N	MS	Gln	Ala	Thr	Gly	Lys	Pro	Pro	Gln	Biniossek et al., 2011
Macrophage migration inhibitory factor	P14174	13-38	Peptide-Ala28+Gln-Peptide	N	MS	Gln	Gln	Leu	Ala	Gln	Ala	Thr	Gly	Biniossek et al., 2011
Macrophage migration inhibitory factor	P14174	34-74	Peptide-His63+Ser-Peptide	N	MS	Cys	Ser	Leu	His	Ser	Ile	Gly	Lys	Biniossek et al., 2011
Macrophage-capping protein	P40121		peptide-Gly89+Glu-peptide	N	MS	Thr	Leu	Leu	Gly	Glu	Arg	Pro	Val	Vidmar et al., 2017
Macrophage-capping protein	P40121		peptide-Lys231+Glu-peptide	N	MS	Pro	Ala	Leu	Lys	Glu	Gly	Asn	Pro	Vidmar et al., 2017
Macrophage-capping protein	P40121		peptide-Ala196+Ile-peptide	N	MS	Leu	Ala	Leu	Ala	Ile	Arg	Asp	Ser	Vidmar et al., 2017
Macrophage-capping protein	P40121		peptide-Gly291+Lys-peptide	N	MS	Gly	Leu	Cys	Gly	Lys	Ile	Tyr	Ile	Vidmar et al., 2017
Macrophage-capping protein	P40121		peptide-Cys290+Gly-peptide	N	MS	Asn	Gly	Leu	Cys	Gly	Lys	Ile	Tyr	Vidmar et al., 2017
Macrophage-capping protein	P40121		peptide-Gln17+Asp-peptide	N	MS	Gly	Ser	Val	Gln	Asp	Pro	Gly	Leu	Vidmar et al., 2017
Macrophage-capping protein	P40121		peptide-Ala176+Trp-peptide	N	MS	Asn	Ile	Phe	Ala	Trp	Cys	Gly	Gly	Vidmar et al., 2017
Macrophage-capping protein	P40121		peptide-Met107+Ser-peptide	N	MS	Asp	Leu	Phe	Met	Ser	Tyr	Phe	Pro	Vidmar et al., 2017
Macrophage-capping protein	P40121		peptide-Gln311+Val-peptide	N	MS	Ala	Ala	Leu	Gln	Val	Ala	Glu	Gly	Vidmar et al., 2017
Macrophage-capping protein	P40121		peptide-Gly66+Gln-peptide	N	MS	Leu	Trp	Ile	Gly	Gln	Gln	Ser	Ser	Vidmar et al., 2017
Macrophage-capping protein	P40121		peptide-Ala313+Glu-peptide	N	MS	Leu	Gln	Val	Ala	Glu	Gly	Phe	Ile	Vidmar et al., 2017
Major vault protein	Q14764		peptide-Ser876+Ala-peptide	N	MS	Ser	Pro	Gln	Ser	Ala	Gln	Ala	Pro	Vidmar et al., 2017
Malate dehydrogenase, cytoplasmic	P40925	180-199	Peptide-Trp184+Gly-Peptide	N	MS	Val	Ile	Ile	Trp	Gly	Asn	His	Ser	Biniossek et al., 2011
Malate dehydrogenase, cytoplasmic	P40925	67-79	Asp-Val-IIe69+Ala-Peptide	N	MS	-	Asp	Val	Ile	Ala	Thr	Asp	Lys	Biniossek et al., 2011
Malate dehydrogenase, cytoplasmic	P40925		peptide-Glu301+Gly-peptide	N	MS	Lys	Phe	Val	Glu	Gly	Leu	Pro	Ile	Vidmar et al., 2017
Malate dehydrogenase, mitochondrial	P40926		peptide-Lys324+Ala-peptide	N	MS	Pro	Glu	Leu	Lys	Ala	Ser	Ile	Lys	Vidmar et al., 2017
Malate dehydrogenase, mitochondrial	P40926		peptide-Ala65+Ala-peptide	N	MS	Pro	Gly	Val	Ala	Ala	Asp	Leu	Ser	Vidmar et al., 2017
Malate dehydrogenase, mitochondrial	P40926		peptide-Gly198+Gly-peptide	N	MS	Pro	Val	Ile	Gly	Gly	His	Ala	Gly	Vidmar et al., 2017
Malate dehydrogenase, mitochondrial	P40926		peptide-Thr54+Leu-peptide	N	MS	Ser	Arg	Leu	Thr	Leu	Tyr	Asp	Ile	Vidmar et al., 2017
Malate dehydrogenase, mitochondrial	P40926		peptide-Lys78+Gly-peptide	N	MS	Ala	Ala	Val	Lys	Gly	Tyr	Leu	Gly	Vidmar et al., 2017
MAPK-interacting and spindle-stabilizing protein-like	Q8NDC0	2-18	Peptide-Ala8+Asp-Peptide	N	MS	Phe	Ser	Leu	Ala	Asp	Ala	Leu	Pro	Biniossek et al., 2011
MARCKS-related protein	P49006	111-144	Peptide-Gly132+Ala-Peptide	N	MS	Gly	Glu	Ile	Gly	Ala	Cys	Ser	Asp	Biniossek et al., 2011
Matrin-3	P43243	543-554	Peptide-Ala547+Met-Peptide	N	MS	Asp	Ala	Met	Ala	Met	Val	Asp	His	Biniossek et al., 2011
Matrin-3	P43243	52-84	Peptide-Ser74+Ser-Peptide	N	MS	Ser	Ala	Leu	Ser	Ser	Ala	Ser	Thr	Biniossek et al., 2011
Matrin-3	P43243	288-304	Peptide-Cys293+Ser-Peptide	N	MS	Pro	His	Leu	Cys	Ser	Ile	Cys	Asp	Biniossek et al., 2011
Matrin-3	P43243		peptide-His499+Leu-peptide	N	MS	Arg	Val	Ile	His	Leu	Ser	Asn	Leu	Vidmar et al., 2017
Matrin-3	P43243		peptide-Lys831+Lys-peptide	N	MS	Gln	Lys	Leu	Lys	Lys	Phe	Leu	Asn	Vidmar et al., 2017
Matrin-3	P43243		peptide-Ser98+Ser-peptide	N	MS	Leu	Pro	Leu	Ser	Ser	Gln	His	Arg	Vidmar et al., 2017
Matrin-3	P43243		peptide-Leu356+Gly-peptide	N	MS	Pro	Gly	Ile	Leu	Gly	Pro	Pro	Pro	Vidmar et al., 2017
Matrin-3	P43243		peptide-Gly366+Gly-peptide	N	MS	Phe	His	Leu	Gly	Gly	Pro	Ala	Val	Vidmar et al., 2017
Matrin-3	P43243		peptide-Arg172+Val-peptide	N	MS	Pro	Pro	Tyr	Arg	Val	Pro	Arg	Asp	Vidmar et al., 2017
Matrin-3	P43243		peptide-Ser126+Arg-peptide	N	MS	Asp	Glu	Leu	Ser	Arg	Tyr	Pro	Glu	Vidmar et al., 2017
Melanoma-associated antigen D2	Q9UNF1	138-171	Peptide-Ser157+Ala-Peptide	N	MS	Glu	Pro	Glu	Ser	Ala	Ala	Ala	Gln	Biniossek et al., 2011
Mesencephalic astrocyte-derived neurotrophic factor	P55145		peptide-Thr50+Phe-peptide	N	MS	Arg	Asp	Val	Thr	Phe	Ser	Pro	Ala	Vidmar et al., 2017
Mesencephalic astrocyte-derived neurotrophic factor	P55145		peptide-Gly79+Ala-peptide	N	MS	Tyr	Tyr	Ile	Gly	Ala	Thr	Asp	Asp	Vidmar et al., 2017
Methionine--tRNA ligase, cytoplasmic	P56192	882-895	Peptide-Ala886+Glu-Peptide	N	MS	Leu	Ala	Val	Ala	Glu	Gly	Lys	Pro	Biniossek et al., 2011
Methylosome protein 50	Q9BQA1		peptide-His324+His-peptide	N	MS	Gln	Val	Val	His	His	Val	Val	Pro	Vidmar et al., 2017
Microtubule-associated protein 1B	P46821		peptide-Thr1449+Ser-peptide	N	MS	Ser	Glu	Met	Thr	Ser	Thr	Ser	Leu	Vidmar et al., 2017
Microtubule-associated protein 1B	P46821		peptide-Ser1520+Ile-peptide	N	MS	Thr	Lys	Met	Ser	Ile	Ser	Glu	Gly	Vidmar et al., 2017
Microtubule-associated protein 1B	P46821		peptide-Pro514+Leu-peptide	N	MS	Leu	Lys	Gln	Pro	Leu	Ala	Thr	Gln	Vidmar et al., 2017
Microtubule-associated protein 1B	P46821		peptide-Ser1970+Gly-peptide	N	MS	Pro	Glu	Val	Ser	Gly	Tyr	Ser	Tyr	Vidmar et al., 2017
Microtubule-associated protein 1B	P46821		peptide-Ala1558+Thr-peptide	N	MS	Ala	Ser	Val	Ala	Thr	Ser	Ser	Phe	Vidmar et al., 2017
Microtubule-associated protein 1B	P46821		peptide-Glu874+Ala-peptide	N	MS	Glu	Pro	Val	Glu	Ala	Tyr	Val	Ile	Vidmar et al., 2017
Microtubule-associated protein 1B	P46821		peptide-Ala2111+Ser-peptide	N	MS	Glu	Trp	Phe	Ala	Ser	Glu	Glu	Pro	Vidmar et al., 2017
Microtubule-associated protein 4	P27816		peptide-Thr629+Gly-peptide	N	MS	Glu	Thr	Val	Thr	Gly	Thr	Gly	Lys	Vidmar et al., 2017
Microtubule-associated protein 4	P27816		peptide-Asn655+Ser-peptide	N	MS	Lys	Pro	Cys	Asn	Ser	Gln	Pro	Ser	Vidmar et al., 2017
Microtubule-associated protein 4	P27816		peptide-Lys142+Met-peptide	N	MS	Asp	Pro	Phe	Lys	Met	Tyr	His	Asp	Vidmar et al., 2017
Microtubule-associated protein 4	P27816		peptide-Thr287+Leu-peptide	N	MS	Leu	Asp	Val	Thr	Leu	Ala	Lys	Asp	Vidmar et al., 2017
Microtubule-associated protein 4	P27816		peptide-Ala744+Ser-peptide	N	MS	Met	Ser	Leu	Ala	Ser	Gly	Leu	Val	Vidmar et al., 2017
Microtubule-associated protein 4	P27816		peptide-Lys246+Thr-peptide	N	MS	Met	Gly	Leu	Lys	Thr	Thr	Asp	Met	Vidmar et al., 2017
Microtubule-associated protein 4	P27816		peptide-Ser580+Glu-peptide	N	MS	Pro	Pro	Leu	Ser	Glu	Thr	Glu	Ala	Vidmar et al., 2017
Microtubule-associated protein 4	P27816		peptide-Ser68+Glu-peptide	N	MS	Lys	Pro	Cys	Ser	Glu	Thr	Ser	Gln	Vidmar et al., 2017
Microtubule-associated protein 4	P27816		peptide-Ala543+Leu-peptide	N	MS	Met	Glu	Val	Ala	Leu	Thr	Glu	Asp	Vidmar et al., 2017
Microtubule-associated protein 4	P27816		peptide-Ser679+Gly-peptide	N	MS	Pro	Val	Val	Ser	Gly	Thr	Gly	Asn	Vidmar et al., 2017
Microtubule-associated protein 4	P27816		peptide-Ser636+Leu-peptide	N	MS	Lys	Lys	Cys	Ser	Leu	Pro	Ala	Glu	Vidmar et al., 2017
Microtubule-associated protein 4	P27816		peptide-Ser876+Gly-peptide	N	MS	Thr	Thr	Leu	Ser	Gly	Thr	Ala	Pro	Vidmar et al., 2017
Microtubule-associated protein 4	P27816		peptide-Thr565+Leu-peptide	N	MS	Gly	Val	Leu	Thr	Leu	Ala	Asn	Asn	Vidmar et al., 2017
Microtubule-associated protein 4	P27816		peptide-Ser662+Ser-peptide	N	MS	Ser	Glu	Leu	Ser	Ser	Glu	Thr	Ser	Vidmar et al., 2017
Microtubule-associated protein RP/EB family member 1	Q15691	131-150	Peptide-Val142+Ala-Peptide	N	MS	Pro	Ser	Leu	Val	Ala	Pro	Ala	Leu	Biniossek et al., 2011
Microtubule-associated protein RP/EB family member 1	Q15691	151-168	Peptide-Thr154+Ser-Peptide	N	MS	Lys	Pro	Leu	Thr	Ser	Ser	Ser	Ala	Biniossek et al., 2011
Microtubule-associated protein RP/EB family member 1	Q15691		peptide-Lys204+Leu-peptide	N	MS	Asn	Val	Leu	Lys	Leu	Thr	Val	Glu	Vidmar et al., 2017
Microtubule-associated protein RP/EB family member 1	Q15691		peptide-Arg181+Lys-peptide	N	MS	Gly	Val	Val	Arg	Lys	Asn	Pro	Gly	Vidmar et al., 2017
Mitochondrial import inner membrane translocase subunit Tim13	Q9Y5L4	50-64	Cys-IIe-Gly52+Lys-Peptide	N	MS	-	Cys	Ile	Gly	Lys	Pro	Gly	Gly	Biniossek et al., 2011
Mitochondrial import receptor subunit TOM34	Q15785		peptide-Lys143+Leu-peptide	N	MS	Trp	Arg	Leu	Lys	Leu	Pro	Ser	Ile	Vidmar et al., 2017
Mitochondrial import receptor subunit TOM34	Q15785		peptide-Met133+Asp-peptide	N	MS	Arg	Ala	Leu	Met	Asp	Ser	Leu	Gly	Vidmar et al., 2017
Mitochondrial-processing peptidase subunit alpha	Q10713		peptide-Ser45+Ser-peptide	N	MS	Ile	Pro	Leu	Ser	Ser	Pro	Leu	Pro	Vidmar et al., 2017
Mitogen-activated protein kinase 9	P45984	221-236	Peptide-Gln226+Gly-Peptide	N	MS	Val	Ile	Phe	Gln	Gly	Thr	Asp	His	Biniossek et al., 2011
Mitotic spindle-associated MMXD complex subunit MIP18	Q9Y3D0		peptide-Thr29+Ala-peptide	N	MS	Arg	Pro	Val	Thr	Ala	Gly	Glu	Glu	Vidmar et al., 2017
MKL/myocardin-like protein 2	Q9ULH7	597-615	Peptide-Glu604+Ala-Peptide	N	MS	Arg	Pro	Leu	Glu	Ala	Gln	Pro	Ser	Biniossek et al., 2011
Moesin	P26038		peptide-Gly239+Phe-peptide	N	MS	Pro	Lys	Ile	Gly	Phe	Pro	Trp	Ser	Vidmar et al., 2017
Moesin	P26038		peptide-Gly224+Leu-peptide	N	MS	Asp	Ala	Leu	Gly	Leu	Asn	Ile	Tyr	Vidmar et al., 2017
Moesin	P26038		peptide-Gln131+Ser-peptide	N	MS	Tyr	Ala	Val	Gln	Ser	Lys	Tyr	Gly	Vidmar et al., 2017
Moesin	P26038		peptide-Glu374+Leu-peptide	N	MS	Arg	Ala	Leu	Glu	Leu	Glu	Gln	Glu	Vidmar et al., 2017
Moesin	P26038		peptide-Glu432+Met-peptide	N	MS	Ser	Gln	Leu	Glu	Met	Ala	Arg	Gln	Vidmar et al., 2017
Moesin	P26038		peptide-Leu147+Ala-peptide	N	MS	Ser	Gly	Tyr	Leu	Ala	Gly	Asp	Lys	Vidmar et al., 2017
Moesin	P26038		peptide-Asp261+Lys-peptide	N	MS	Lys	Pro	Ile	Asp	Lys	Lys	Ala	Pro	Vidmar et al., 2017
Moesin	P26038		peptide-Arg563+Gln-peptide	N	MS	Arg	Gln	Ile	Arg	Gln	Gly	Asn	Thr	Vidmar et al., 2017
Moesin	P26038		peptide-Gln405+Ala-peptide	N	MS	Ala	Leu	Leu	Gln	Ala	Ser	Arg	Asp	Vidmar et al., 2017
Moesin	P26038		peptide-Lys352+Gln-peptide	N	MS	Glu	Arg	Leu	Lys	Gln	Ile	Glu	Glu	Vidmar et al., 2017
Moesin	P26038		peptide-Leu158+Glu-peptide	N	MS	Gln	Arg	Val	Leu	Glu	Gln	His	Lys	Vidmar et al., 2017
Moesin	P26038		peptide-Gln450+Met-peptide	N	MS	Gln	Lys	Ala	Gln	Met	Val	Gln	Glu	Vidmar et al., 2017
Moesin	P26038		peptide-Arg560+Gln-peptide	N	MS	Lys	Thr	Leu	Arg	Gln	Ile	Arg	Gln	Vidmar et al., 2017
Moesin	P26038		peptide-Thr526+Ser-peptide	N	MS	Lys	Ala	Leu	Thr	Ser	Glu	Leu	Ala	Vidmar et al., 2017
Moesin	P26038		peptide-Ala530+Asn-peptide	N	MS	Ser	Glu	Leu	Ala	Asn	Ala	Arg	Asp	Vidmar et al., 2017
Moesin	P26038		peptide-Gln453+Glu-peptide	N	MS	Gln	Met	Val	Gln	Glu	Asp	Leu	Glu	Vidmar et al., 2017
Monocarboxylate transporter 4	O15427		peptide-Lys448+Ala-peptide	N	MS	His	Phe	Leu	Lys	Ala	Glu	Pro	Glu	Vidmar et al., 2017
Multifunctional protein ADE2	P22234	268-283	Peptide-Met272+Gly-Peptide	N	MS	Val	Val	Leu	Met	Gly	Ser	Thr	Ser	Biniossek et al., 2011
Multifunctional protein ADE2	P22234	268-283	Peptide-Gly273+Ser-Peptide	N	MS	Val	Leu	Met	Gly	Ser	Thr	Ser	Asp	Biniossek et al., 2011
Multifunctional protein ADE2	P22234		peptide-Ala327+Val-peptide	N	MS	Val	Phe	Val	Ala	Val	Ala	Gly	Arg	Vidmar et al., 2017
Myb-binding protein 1A	Q9BQG0	34-50	Peptide-Trp40+Asp-Peptide	N	MS	Asp	Phe	Phe	Trp	Asp	Ile	Ala	Lys	Biniossek et al., 2011
myelin basic protein isoform 1	P02686	135-304	peptide-Leu16+Ala-peptide	P	MS	Ser	Lys	Tyr	Leu	Ala	Thr	Ala	Ser	Beck et al., 2001	26662
myelin basic protein isoform 1	P02686	135-304	peptide-Asp40+Ser-peptide	P	MS	Gly	Ile	Leu	Asp	Ser	Ile	Gly	Arg	Beck et al., 2001	26667
myelin basic protein isoform 1	P02686	135-304	peptide-Gly47+Gly-peptide	P	MS	Arg	Phe	Phe	Gly	Gly	Asp	Arg	Gly	Beck et al., 2001	26672
myelin basic protein isoform 1	P02686	135-304	peptide-Arg92+Thr-peptide	P	MS	His	Pro	Ala	Arg	Thr	Ala	His	Tyr	Beck et al., 2001	26677
myelin basic protein isoform 1	P02686	135-304	peptide-His115+Phe-peptide	P	MS	Pro	Val	Val	His	Phe	Phe	Lys	Asn	Beck et al., 2001	26681
myelin basic protein isoform 1	P02686	135-304	peptide-Lys118+Asn-peptide	P	MS	His	Phe	Phe	Lys	Asn	Ile	Val	Thr	Beck et al., 2001	26685
myelin basic protein isoform 1	P02686	135-304	peptide-Ser137+Leu-peptide	P	MS	Arg	Gly	Leu	Ser	Leu	Ser	Arg	Phe	Beck et al., 2001	26689
myelin basic protein isoform 1	P02686	135-304	peptide-Ser142+Trp-peptide	P	MS	Ser	Arg	Phe	Ser	Trp	Gly	Ala	Glu	Beck et al., 2001	26691
myelin basic protein isoform 1	P02686	135-304	peptide-Gly153+Tyr-peptide	P	MS	Pro	Gly	Phe	Gly	Tyr	Gly	Gly	Arg	Beck et al., 2001	26694
myelin basic protein isoform 1	P02686	135-304	peptide-Tyr154+Gly-peptide	P	MS	Gly	Phe	Gly	Tyr	Gly	Gly	Arg	Ala	Beck et al., 2001	26698
myelin basic protein isoform 1	P02686	135-304	peptide-Gly155+Gly-peptide	P	MS	Phe	Gly	Tyr	Gly	Gly	Arg	Ala	Ser	Beck et al., 2001	26702
myelin basic protein isoform 1	P02686	135-304	peptide-Lys169+Gly-peptide	P	MS	Lys	Gly	Phe	Lys	Gly	Val	Asp	Ala	Beck et al., 2001	26706
myelin basic protein isoform 1	P02686	135-304	peptide-Asp172+Ala-peptide	P	MS	Lys	Gly	Val	Asp	Ala	Gln	Gly	Thr	Beck et al., 2001	26710
myelin basic protein isoform 1	P02686	135-304	peptide-Lys182+Leu-peptide	P	MS	Lys	Ile	Phe	Lys	Leu	Gly	Gly	Arg	Beck et al., 2001	26714
Myoferlin	Q9NZM1		peptide-Lys1237+Leu-peptide	N	MS	Pro	Val	Val	Lys	Leu	Asn	Ser	Glu	Vidmar et al., 2017
Myoferlin	Q9NZM1		peptide-Gly1635+Glu-peptide	N	MS	Glu	Lys	Val	Gly	Glu	Thr	Ile	Ile	Vidmar et al., 2017
Myoferlin	Q9NZM1		peptide-Ser136+Gly-peptide	N	MS	Asn	Asp	Leu	Ser	Gly	Pro	Ser	Val	Vidmar et al., 2017
Myosin light chain 6B	P14649	95-107	Ala-Leu-Gly97+Gln-Peptide	N	MS	-	Ala	Leu	Gly	Gln	Asn	Pro	Thr	Biniossek et al., 2011
Myosin light polypeptide 6	P60660		peptide-Leu52+Gly-peptide	N	MS	Leu	Lys	Val	Leu	Gly	Asn	Pro	Lys	Vidmar et al., 2017
Myosin light polypeptide 6	P60660		peptide-Arg94+Val-peptide	N	MS	Glu	Gly	Leu	Arg	Val	Phe	Asp	Lys	Vidmar et al., 2017
Myosin light polypeptide 6	P60660		peptide-Gln17+Leu-peptide	N	MS	Glu	Ala	Phe	Gln	Leu	Phe	Asp	Arg	Vidmar et al., 2017
Myosin light polypeptide 6	P60660		peptide-Gly106+Ala-peptide	N	MS	Thr	Val	Met	Gly	Ala	Glu	Ile	Arg	Vidmar et al., 2017
Myosin light polypeptide 6	P60660		peptide-Leu65+Asp-peptide	N	MS	Val	Lys	Val	Leu	Asp	Phe	Glu	His	Vidmar et al., 2017
Myosin light polypeptide 6	P60660		peptide-Gly53+Asn-peptide	N	MS	Lys	Val	Leu	Gly	Asn	Pro	Lys	Ser	Vidmar et al., 2017
Myosin light polypeptide 6	P60660		peptide-Gln75+Thr-peptide	N	MS	Pro	Met	Leu	Gln	Thr	Val	Ala	Lys	Vidmar et al., 2017
Myosin regulatory light chain 12A	P19105		peptide-Gly90+Glu-peptide	N	MS	Thr	Met	Phe	Gly	Glu	Lys	Leu	Asn	Vidmar et al., 2017
Myosin regulatory light chain 12A	P19105		peptide-Lys34+Glu-peptide	N	MS	Gln	Glu	Phe	Lys	Glu	Ala	Phe	Asn	Vidmar et al., 2017
Myosin regulatory light chain 12A	P19105		peptide-Ala23+Met-peptide	N	MS	Asn	Val	Phe	Ala	Met	Phe	Asp	Gln	Vidmar et al., 2017
Myosin regulatory light chain 12A	P19105		peptide-Phe25+Asp-peptide	N	MS	Phe	Ala	Met	Phe	Asp	Gln	Ser	Gln	Vidmar et al., 2017
Myosin regulatory light chain 12A	P19105		peptide-Phe22+Ala-peptide	N	MS	Ser	Asn	Val	Phe	Ala	Met	Phe	Asp	Vidmar et al., 2017
Myosin regulatory light chain 12A	P19105		peptide-Gly130+Asp-peptide	N	MS	Thr	Thr	Met	Gly	Asp	Arg	Phe	Thr	Vidmar et al., 2017
Myosin-9	P35579		peptide-Leu1450+Ala-peptide	N	MS	Asp	Gln	Leu	Leu	Ala	Glu	Glu	Lys	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu998+Asp-peptide	N	MS	Lys	Leu	Leu	Glu	Asp	Arg	Ile	Ala	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu722+Ile-peptide	N	MS	Gln	Arg	Tyr	Glu	Ile	Leu	Thr	Pro	Vidmar et al., 2017
Myosin-9	P35579		peptide-Ser609+Glu-peptide	N	MS	Lys	Phe	Val	Ser	Glu	Leu	Trp	Lys	Vidmar et al., 2017
Myosin-9	P35579		peptide-Gly379+Ile-peptide	N	MS	His	Leu	Leu	Gly	Ile	Asn	Val	Thr	Vidmar et al., 2017
Myosin-9	P35579		peptide-Gln1419+Gln-peptide	N	MS	Thr	Arg	Leu	Gln	Gln	Glu	Leu	Asp	Vidmar et al., 2017
Myosin-9	P35579		peptide-Asp507+Leu-peptide	N	MS	Phe	Gly	Leu	Asp	Leu	Gln	Pro	Cys	Vidmar et al., 2017
Myosin-9	P35579		peptide-Lys74+Met-peptide	N	MS	Asp	Ile	Gln	Lys	Met	Asn	Pro	Pro	Vidmar et al., 2017
Myosin-9	P35579		peptide-Ala526+Leu-peptide	N	MS	Gly	Ile	Leu	Ala	Leu	Leu	Asp	Glu	Vidmar et al., 2017
Myosin-9	P35579		peptide-Lys1212+Ala-peptide	N	MS	Lys	Arg	Val	Lys	Ala	Asn	Leu	Glu	Vidmar et al., 2017
Myosin-9	P35579		peptide-Tyr11+Val-peptide	N	MS	Lys	Tyr	Leu	Tyr	Val	Asp	Lys	Asn	Vidmar et al., 2017
Myosin-9	P35579		peptide-Gln348+Leu-peptide	N	MS	Gly	Val	Leu	Gln	Leu	Gly	Asn	Ile	Vidmar et al., 2017
Myosin-9	P35579		peptide-Ala152+Ile-peptide	N	MS	His	Ile	Tyr	Ala	Ile	Thr	Asp	Thr	Vidmar et al., 2017
Myosin-9	P35579		peptide-Leu10+Tyr-peptide	N	MS	Asp	Lys	Tyr	Leu	Tyr	Val	Asp	Lys	Vidmar et al., 2017
Myosin-9	P35579		peptide-Ser1457+Ala-peptide	N	MS	Lys	Thr	Ile	Ser	Ala	Lys	Tyr	Ala	Vidmar et al., 2017
Myosin-9	P35579		peptide-Met848+Ala-peptide	N	MS	Glu	Glu	Met	Met	Ala	Lys	Glu	Glu	Vidmar et al., 2017
Myosin-9	P35579		peptide-Lys1566+Ala-peptide	N	MS	Gln	Ala	Met	Lys	Ala	Gln	Phe	Glu	Vidmar et al., 2017
Myosin-9	P35579		peptide-Lys587+Asn-peptide	N	MS	Trp	Leu	Met	Lys	Asn	Met	Asp	Pro	Vidmar et al., 2017
Myosin-9	P35579		peptide-Gln839+Val-peptide	N	MS	Pro	Leu	Leu	Gln	Val	Ser	Arg	Gln	Vidmar et al., 2017
Myosin-9	P35579		peptide-Lys1876+Arg-peptide	N	MS	Lys	Gln	Leu	Lys	Arg	Gln	Leu	Glu	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu921+Ala-peptide	N	MS	His	Asp	Leu	Glu	Ala	Arg	Val	Glu	Vidmar et al., 2017
Myosin-9	P35579		peptide-Leu1849+Gln-peptide	N	MS	Asp	Val	Leu	Leu	Gln	Val	Asp	Asp	Vidmar et al., 2017
Myosin-9	P35579		peptide-Arg1268+Thr-peptide	N	MS	Glu	Arg	Val	Arg	Thr	Glu	Leu	Ala	Vidmar et al., 2017
Myosin-9	P35579		peptide-Thr309+Ile-peptide	N	MS	Gly	His	Val	Thr	Ile	Pro	Gly	Gln	Vidmar et al., 2017
Myosin-9	P35579		peptide-Leu378+Gly-peptide	N	MS	Ser	His	Leu	Leu	Gly	Ile	Asn	Val	Vidmar et al., 2017
Myosin-9	P35579		peptide-Ala195+Ser-peptide	N	MS	Ala	Tyr	Val	Ala	Ser	Ser	His	Lys	Vidmar et al., 2017
Myosin-9	P35579		peptide-Arg1191+Gln-peptide	N	MS	Gln	Glu	Met	Arg	Gln	Lys	His	Ser	Vidmar et al., 2017
Myosin-9	P35579		peptide-Gln1258+Val-peptide	N	MS	Gln	Glu	Leu	Gln	Val	Lys	Phe	Asn	Vidmar et al., 2017
Myosin-9	P35579		peptide-Asp578+Tyr-peptide	N	MS	Gly	Lys	Val	Asp	Tyr	Lys	Ala	Asp	Vidmar et al., 2017
Myosin-9	P35579		peptide-Thr386+Arg-peptide	N	MS	Thr	Asp	Phe	Thr	Arg	Gly	Ile	Leu	Vidmar et al., 2017
Myosin-9	P35579		peptide-Asn1499+Lys-peptide	N	MS	Glu	Arg	Leu	Asn	Lys	Gln	Phe	Arg	Vidmar et al., 2017
Myosin-9	P35579		peptide-Arg1342+Glu-peptide	N	MS	Asn	Ser	Phe	Arg	Glu	Gln	Leu	Glu	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1381+Thr-peptide	N	MS	Gly	Cys	Leu	Glu	Thr	Ala	Glu	Glu	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1199+Glu-peptide	N	MS	Gln	Ala	Val	Glu	Glu	Leu	Ala	Glu	Vidmar et al., 2017
Myosin-9	P35579		peptide-Cys896+Ala-peptide	N	MS	Thr	Glu	Leu	Cys	Ala	Glu	Ala	Glu	Vidmar et al., 2017
Myosin-9	P35579		peptide-Asn93+Glu-peptide	N	MS	Thr	Cys	Leu	Asn	Glu	Ala	Ser	Val	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1728+Ala-peptide	N	MS	Arg	Arg	Leu	Glu	Ala	Arg	Ile	Ala	Vidmar et al., 2017
Myosin-9	P35579		peptide-Lys1793+Leu-peptide	N	MS	Leu	Lys	Val	Lys	Leu	Gln	Glu	Met	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1490+Gln-peptide	N	MS	Glu	Ala	Met	Glu	Gln	Lys	Ala	Glu	Vidmar et al., 2017
Myosin-9	P35579		peptide-Arg1162+Ser-peptide	N	MS	Gln	Glu	Leu	Arg	Ser	Lys	Arg	Glu	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1901+Asp-peptide	N	MS	Arg	Glu	Leu	Glu	Asp	Ala	Thr	Glu	Vidmar et al., 2017
Myosin-9	P35579		peptide-Ala1690+Ala-peptide	N	MS	Glu	Glu	Leu	Ala	Ala	Ala	Glu	Arg	Vidmar et al., 2017
Myosin-9	P35579		peptide-Leu294+Glu-peptide	N	MS	Asp	Leu	Leu	Leu	Glu	Pro	Tyr	Asn	Vidmar et al., 2017
Myosin-9	P35579		peptide-Gln942+Gln-peptide	N	MS	Lys	Lys	Met	Gln	Gln	Asn	Ile	Gln	Vidmar et al., 2017
Myosin-9	P35579		peptide-Leu293+Leu-peptide	N	MS	Thr	Asp	Leu	Leu	Leu	Glu	Pro	Tyr	Vidmar et al., 2017
Myosin-9	P35579		peptide-Arg705+Gln-peptide	N	MS	Arg	Ile	Cys	Arg	Gln	Gly	Phe	Pro	Vidmar et al., 2017
Myosin-9	P35579		peptide-Cys172+Thr-peptide	N	MS	Ser	Ile	Leu	Cys	Thr	Gly	Glu	Ser	Vidmar et al., 2017
Myosin-9	P35579		peptide-Lys1145+Thr-peptide	N	MS	Glu	Ala	Leu	Lys	Thr	Glu	Leu	Glu	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu57+Leu-peptide	N	MS	Ala	Ile	Val	Glu	Leu	Val	Glu	Asn	Vidmar et al., 2017
Myosin-9	P35579		peptide-Arg1922+Arg-peptide	N	MS	Asn	Lys	Leu	Arg	Arg	Gly	Asp	Leu	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1595+Ala-peptide	N	MS	Arg	Glu	Met	Glu	Ala	Glu	Leu	Glu	Vidmar et al., 2017
Myosin-9	P35579		peptide-Ala22+Gln-peptide	N	MS	Asn	Pro	Leu	Ala	Gln	Ala	Asp	Trp	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1820+Glu-peptide	N	MS	Ala	Gln	Leu	Glu	Glu	Gln	Leu	Asp	Vidmar et al., 2017
Myosin-9	P35579		peptide-Arg1652+Glu-peptide	N	MS	Asp	Cys	Met	Arg	Glu	Leu	Asp	Asp	Vidmar et al., 2017
Myosin-9	P35579		peptide-Arg1592+Glu-peptide	N	MS	Arg	Gln	Val	Arg	Glu	Met	Glu	Ala	Vidmar et al., 2017
Myosin-9	P35579		peptide-Leu1380+Glu-peptide	N	MS	Val	Gly	Cys	Leu	Glu	Thr	Ala	Glu	Vidmar et al., 2017
Myosin-9	P35579		peptide-Arg662+Asn-peptide	N	MS	Ala	Thr	Leu	Arg	Asn	Thr	Asn	Pro	Vidmar et al., 2017
Myosin-9	P35579		peptide-Thr907+Ala-peptide	N	MS	Ala	Arg	Leu	Thr	Ala	Lys	Lys	Gln	Vidmar et al., 2017
Myosin-9	P35579		peptide-Lys1538+Thr-peptide	N	MS	Glu	Glu	Met	Lys	Thr	Gln	Leu	Glu	Vidmar et al., 2017
Myosin-9	P35579		peptide-Met329+Gly-peptide	N	MS	Met	Arg	Ile	Met	Gly	Ile	Pro	Glu	Vidmar et al., 2017
Myosin-9	P35579		peptide-Met1510+Ser-peptide	N	MS	Glu	Asp	Leu	Met	Ser	Ser	Lys	Asp	Vidmar et al., 2017
Myosin-9	P35579		peptide-Ser1511+Ser-peptide	N	MS	Asp	Leu	Met	Ser	Ser	Lys	Asp	Asp	Vidmar et al., 2017
Myosin-9	P35579		peptide-Lys1332+Gln-peptide	N	MS	Thr	Lys	Leu	Lys	Gln	Val	Glu	Asp	Vidmar et al., 2017
Myosin-9	P35579		peptide-Trp33+Val-peptide	N	MS	Lys	Leu	Val	Trp	Val	Pro	Ser	Asp	Vidmar et al., 2017
Myosin-9	P35579		peptide-Asp1153+Ser-peptide	N	MS	Asp	Thr	Leu	Asp	Ser	Thr	Ala	Ala	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1616+Met-peptide	N	MS	Lys	Lys	Leu	Glu	Met	Asp	Leu	Lys	Vidmar et al., 2017
Myosin-9	P35579		peptide-Arg1589+Gln-peptide	N	MS	Gln	Leu	Val	Arg	Gln	Val	Arg	Glu	Vidmar et al., 2017
Myosin-9	P35579		peptide-Ala1406+Ala-peptide	N	MS	Glu	Lys	Val	Ala	Ala	Tyr	Asp	Lys	Vidmar et al., 2017
Myosin-9	P35579		peptide-Gly330+Ile-peptide	N	MS	Arg	Ile	Met	Gly	Ile	Pro	Glu	Glu	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu1735+Glu-peptide	N	MS	Ala	Gln	Leu	Glu	Glu	Glu	Leu	Glu	Vidmar et al., 2017
Myosin-9	P35579		peptide-Glu949+Glu-peptide	N	MS	Gln	Glu	Leu	Glu	Glu	Gln	Leu	Glu	Vidmar et al., 2017
Myosin-9	P35579		peptide-Lys1173+Lys-peptide	N	MS	Asn	Ile	Leu	Lys	Lys	Thr	Leu	Glu	Vidmar et al., 2017
Myristoylated alanine-rich C-kinase substrate	P29966	194-256	Peptide-Glu241+Ala-Peptide	N	MS	Lys	Pro	Gln	Glu	Ala	Ala	Val	Ala	Biniossek et al., 2011
Myristoylated alanine-rich C-kinase substrate	P29966	239-256	Peptide-Ala243+Val-Peptide	N	MS	Gln	Glu	Ala	Ala	Val	Ala	Pro	Glu	Biniossek et al., 2011
Myristoylated alanine-rich C-kinase substrate	P29966	194-256	Peptide-Ala242+Ala-Peptide	N	MS	Pro	Gln	Glu	Ala	Ala	Val	Ala	Pro	Biniossek et al., 2011
N(G),N(G)-dimethylarginine dimethylaminohydrolase 2	O95865		peptide-Phe222+Leu-peptide	N	MS	Asp	Cys	Leu	Phe	Leu	Arg	Pro	Gly	Vidmar et al., 2017
N-acylglucosamine 2-epimerase	P51606	178-191	Peptide-Gly182+Ala-Peptide	N	MS	Gln	Leu	Gln	Gly	Ala	Pro	Ala	Ala	Biniossek et al., 2011
NEDD8-activating enzyme E1 regulatory subunit	Q13564	168-184	Peptide-Glu173+Ser-Peptide	N	MS	Pro	Val	Ile	Glu	Ser	His	Pro	Asp	Biniossek et al., 2011
NEDD8-conjugating enzyme Ubc12	P61081	82-92	Val-Gly83+Gln-Peptide	N	MS	-	-	Val	Gly	Gln	Gly	Tyr	Pro	Biniossek et al., 2011
NEDD8-conjugating enzyme Ubc12	P61081		peptide-Asn42+Leu-peptide	N	MS	Asn	Glu	Leu	Asn	Leu	Pro	Lys	Thr	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Asp3915+Ile-peptide	N	MS	Pro	Lys	Val	Asp	Ile	Asn	Ala	Pro	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Thr5729+Gly-peptide	N	MS	Gly	Gly	Val	Thr	Gly	Ser	Pro	Glu	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Lys1210+Gly-peptide	N	MS	Pro	Lys	Val	Lys	Gly	Asp	Val	Asp	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Lys712+Gly-peptide	N	MS	Thr	Lys	Val	Lys	Gly	Glu	Tyr	Asp	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Lys1466+Gly-peptide	N	MS	Pro	Lys	Met	Lys	Gly	Asp	Tyr	Asp	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Lys1140+Gly-peptide	N	MS	Pro	Ser	Leu	Lys	Gly	Glu	Gly	Pro	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Ser1068+Leu-peptide	N	MS	Pro	Lys	Met	Ser	Leu	Pro	Asp	Val	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Asp1830+Leu-peptide	N	MS	Pro	Asp	Val	Asp	Leu	Glu	Cys	Pro	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Thr4339+Leu-peptide	N	MS	Val	Asp	Val	Thr	Leu	Pro	Lys	Ala	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Ser521+Ala-peptide	N	MS	Ile	Lys	Val	Ser	Ala	Pro	Gly	Val	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Ser5448+Ala-peptide	N	MS	Pro	Arg	Ile	Ser	Ala	Pro	Asn	Val	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Glu2861+Gly-peptide	N	MS	Pro	Lys	Val	Glu	Gly	Asp	Leu	Lys	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Lys3292+Ile-peptide	N	MS	Asn	Met	Pro	Lys	Ile	Ser	Met	Pro	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Lys3430+Gly-peptide	N	MS	Pro	Lys	Val	Lys	Gly	Asp	Leu	Asp	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Lys1205+Gly-peptide	N	MS	Leu	His	Leu	Lys	Gly	Pro	Lys	Val	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Lys2257+Gly-peptide	N	MS	Pro	Gly	Phe	Lys	Gly	Glu	Gly	Pro	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Ser1580+Met-peptide	N	MS	His	Lys	Ile	Ser	Met	Pro	Asp	Val	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Asp1365+Ile-peptide	N	MS	Pro	Lys	Val	Asp	Ile	Ser	Ala	Pro	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Ser1196+Met-peptide	N	MS	Pro	Lys	Ile	Ser	Met	Pro	Asp	Val	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Lys2962+Ile-peptide	N	MS	Lys	Ala	Pro	Lys	Ile	Pro	Met	Pro	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Gly254+Gly-peptide	N	MS	Ile	Lys	Val	Gly	Gly	Ser	Gly	Val	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Glu867+Val-peptide	N	MS	Pro	Asp	Val	Glu	Val	Gln	Gly	Pro	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Asn2461+Leu-peptide	N	MS	Val	Asp	Leu	Asn	Leu	Lys	Gly	Pro	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Asp732+Ile-peptide	N	MS	Pro	Lys	Val	Asp	Ile	Asp	Ala	Pro	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Asp2421+Val-peptide	N	MS	Pro	His	Val	Asp	Val	Ser	Gly	Pro	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Glu1230+Ile-peptide	N	MS	Pro	Asp	Val	Glu	Ile	Lys	Gly	Pro	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Lys1796+Gly-peptide	N	MS	Pro	Lys	Leu	Lys	Gly	Glu	Ile	Asp	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Thr24+Ile-peptide	N	MS	His	Gly	Leu	Thr	Ile	Ala	Gln	Arg	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Glu595+Gly-peptide	N	MS	Pro	Arg	Val	Glu	Gly	Lys	Val	Lys	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Lys5103+Ala-peptide	N	MS	Pro	Lys	Phe	Lys	Ala	Glu	Ala	Pro	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Asn3457+Leu-peptide	N	MS	Pro	Glu	Val	Asn	Leu	Asn	Ala	Pro	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Lys3036+Gly-peptide	N	MS	Pro	Gly	Phe	Lys	Gly	Glu	Gly	Pro	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Lys1668+Gly-peptide	N	MS	Pro	Lys	Val	Lys	Gly	Asp	Met	Asp	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Lys1082+Gly-peptide	N	MS	Pro	Lys	Met	Lys	Gly	Asn	Val	Asp	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Lys891+Ala-peptide	N	MS	Pro	Gly	Phe	Lys	Ala	Glu	Gly	Pro	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Asp739+Val-peptide	N	MS	Pro	Asp	Val	Asp	Val	His	Gly	Pro	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Lys855+Ser-peptide	N	MS	Val	Glu	Leu	Lys	Ser	Ala	Lys	Met	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Lys5346+Val-peptide	N	MS	Asp	Gly	Val	Lys	Val	Pro	Gly	Ile	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Lys1524+Gly-peptide	N	MS	Pro	Gly	Phe	Lys	Gly	Glu	Gly	Pro	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Asn1426+Ile-peptide	N	MS	Pro	Asp	Val	Asn	Ile	Glu	Gly	Pro	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Lys5512+Leu-peptide	N	MS	Val	Asn	Val	Lys	Leu	Pro	Thr	Gly	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Gly5466+Ala-peptide	N	MS	Gly	Ser	Leu	Gly	Ala	Thr	Gly	Glu	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Ser4130+Met-peptide	N	MS	Pro	Lys	Ile	Ser	Met	Pro	Glu	Val	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Ser3294+Met-peptide	N	MS	Pro	Lys	Ile	Ser	Met	Pro	Glu	Ile	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Ser3240+Leu-peptide	N	MS	Val	Asp	Val	Ser	Leu	Ala	Asn	Val	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Lys371+Gly-peptide	N	MS	Gly	Lys	Leu	Lys	Gly	Pro	Gln	Ile	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Thr376+Gly-peptide	N	MS	Pro	Gln	Ile	Thr	Gly	Pro	Ser	Leu	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Asp3133+Ile-peptide	N	MS	Pro	Lys	Val	Asp	Ile	Asn	Ala	Pro	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Lys3218+Ile-peptide	N	MS	Lys	Ala	Pro	Lys	Ile	Ser	Met	Pro	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Asn1554+Leu-peptide	N	MS	Pro	Asp	Val	Asn	Leu	Glu	Ala	Pro	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Ser440+Val-peptide	N	MS	Pro	Lys	Phe	Ser	Val	Ser	Gly	Ala	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Lys5591+Gly-peptide	N	MS	Leu	Ser	Val	Lys	Gly	Ser	Gly	Gly	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Asp4097+Ile-peptide	N	MS	Pro	Lys	Val	Asp	Ile	Asp	Thr	Pro	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Ser4386+Met-peptide	N	MS	Pro	Lys	Ile	Ser	Met	Pro	Asp	Ile	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Glu988+Met-peptide	N	MS	Pro	Asp	Val	Glu	Met	Gln	Gly	Pro	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Asp1086+Ile-peptide	N	MS	Gly	Asn	Val	Asp	Ile	Ser	Ala	Pro	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Ser5641+Val-peptide	N	MS	Pro	Gly	Leu	Ser	Val	Ser	Gly	Pro	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Ser5195+Ile-peptide	N	MS	Pro	Gln	Val	Ser	Ile	Pro	Asp	Val	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Gly5412+Ile-peptide	N	MS	Pro	Gln	Phe	Gly	Ile	Ser	Thr	Pro	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Glu618+Ala-peptide	N	MS	Pro	Asp	Val	Glu	Ala	His	Gly	Pro	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Gln1097+Val-peptide	N	MS	Gly	Glu	Met	Gln	Val	Pro	Asp	Val	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Asp1419+Ala-peptide	N	MS	Pro	Lys	Met	Asp	Ala	Glu	Val	Pro	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Glu844+Ser-peptide	N	MS	Pro	Lys	Val	Glu	Ser	Glu	Ile	Lys	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Asn261+Ala-peptide	N	MS	Val	Asn	Val	Asn	Ala	Lys	Gly	Leu	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Lys5434+Gly-peptide	N	MS	Gly	Glu	Leu	Lys	Gly	Pro	Gly	Val	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Ser637+Thr-peptide	N	MS	Pro	Thr	Phe	Ser	Thr	Pro	Gly	Ala	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Ser1324+Met-peptide	N	MS	Pro	Lys	Ile	Ser	Met	Pro	Asp	Val	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Ser2313+Met-peptide	N	MS	Pro	Lys	Ile	Ser	Met	Pro	Asp	Val	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Lys1353+Val-peptide	N	MS	Gly	Glu	Met	Lys	Val	Pro	Asp	Val	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Lys5498+Ser-peptide	N	MS	Pro	Gly	Ile	Lys	Ser	Ser	Gly	Cys	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Gly1540+Val-peptide	N	MS	Ala	Asp	Leu	Gly	Val	Ser	Gly	Pro	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Lys5056+Ala-peptide	N	MS	Ala	Ser	Leu	Lys	Ala	Pro	Asp	Val	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Leu11+Leu-peptide	N	MS	Arg	Glu	Leu	Leu	Leu	Pro	Asn	Trp	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Ser3220+Met-peptide	N	MS	Pro	Lys	Ile	Ser	Met	Pro	Asp	Leu	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Ser1042+Leu-peptide	N	MS	Pro	Asp	Leu	Ser	Leu	Glu	Gly	Pro	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Asn5607+Leu-peptide	N	MS	Ser	Ala	Leu	Asn	Leu	Asp	Thr	Ser	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Lys537+Gly-peptide	N	MS	Val	Ala	Leu	Lys	Gly	Ser	Arg	Val	Vidmar et al., 2017
Neuroblast differentiation-associated protein AHNAK	Q09666		peptide-Thr190+Glu-peptide	N	MS	His	Glu	Leu	Thr	Glu	Ile	Ser	Asn	Vidmar et al., 2017
Neuronal acetylcholine receptor subunit beta-2	P17787		peptide-Leu340+Glu-peptide	N	MS	Val	Val	Phe	Leu	Glu	Lys	Leu	Pro	Vidmar et al., 2017
Neutral alpha-glucosidase AB	Q14697	238-267	Peptide-Tyr257+Gly-Peptide	N	MS	Glu	His	Val	Tyr	Gly	Ile	Pro	Glu	Biniossek et al., 2011
Neutral alpha-glucosidase AB	Q14697	338-354	Peptide-Gln343+Gly-Peptide	N	MS	Asp	Tyr	Leu	Gln	Gly	Ser	Gly	Glu	Biniossek et al., 2011
Neutral alpha-glucosidase AB	Q14697	463-492	Leu-Val-Ala465+IIe-Peptide	N	MS	-	Leu	Val	Ala	Ile	Val	Asp	Pro	Biniossek et al., 2011
Neutral alpha-glucosidase AB	Q14697	611-627	Peptide-Trp615+Thr-Peptide	N	MS	Gly	Ala	Val	Trp	Thr	Gly	Asp	Asn	Biniossek et al., 2011
Nicotinamide phosphoribosyltransferase	P43490		peptide-Thr304+Gln-peptide	N	MS	Ser	Arg	Ser	Thr	Gln	Ala	Pro	Leu	Vidmar et al., 2017
Nicotinamide phosphoribosyltransferase	P43490		peptide-Lys117+Ala-peptide	N	MS	Ile	Glu	Ile	Lys	Ala	Val	Pro	Glu	Vidmar et al., 2017
Nicotinamide phosphoribosyltransferase	P43490		peptide-His433+Arg-peptide	N	MS	Leu	Ser	Leu	His	Arg	Thr	Pro	Ala	Vidmar et al., 2017
Nicotinamide phosphoribosyltransferase	P43490		peptide-Gly207+Ala-peptide	N	MS	Ala	Gly	Ile	Gly	Ala	Ser	Ala	His	Vidmar et al., 2017
Nicotinamide phosphoribosyltransferase	P43490		peptide-Ser241+Val-peptide	N	MS	Pro	Gly	Tyr	Ser	Val	Pro	Ala	Ala	Vidmar et al., 2017
Nicotinamide phosphoribosyltransferase	P43490		peptide-Leu105+Glu-peptide	N	MS	Asn	Tyr	Ile	Leu	Glu	Lys	Tyr	Asp	Vidmar et al., 2017
Nicotinamide phosphoribosyltransferase	P43490		peptide-Thr442+Leu-peptide	N	MS	Asn	Phe	Val	Thr	Leu	Glu	Glu	Gly	Vidmar et al., 2017
Non-POU domain-containing octamer-binding protein	Q15233	326-336	Met-Glu327+Glu-Peptide	N	MS	-	-	Met	Glu	Glu	Leu	His	Asn	Biniossek et al., 2011
Non-POU domain-containing octamer-binding protein	Q15233		peptide-Gly394+Ile-peptide	N	MS	Gly	Ala	Met	Gly	Ile	Asn	Asn	Arg	Vidmar et al., 2017
Non-POU domain-containing octamer-binding protein	Q15233		peptide-Gly426+Leu-peptide	N	MS	Gly	Thr	Leu	Gly	Leu	Thr	Pro	Pro	Vidmar et al., 2017
Nuclear autoantigenic sperm protein	P49321	328-376	Peptide-Ser364+Glu-Peptide	N	MS	Ser	Glu	Val	Ser	Glu	Lys	Pro	Gly	Biniossek et al., 2011
Nuclear autoantigenic sperm protein	P49321	244-255	Ser-Val-Ser246+Gly-Peptide	N	MS	-	Ser	Val	Ser	Gly	Thr	Asp	Val	Biniossek et al., 2011
Nuclear autoantigenic sperm protein	P49321	21-44	Peptide-Thr29+Ser-Peptide	N	MS	Ala	Pro	Ser	Thr	Ser	Ala	Asp	Lys	Biniossek et al., 2011
Nuclear autoantigenic sperm protein	P49321	215-243	Peptide-Thr228+Ser-Peptide	N	MS	Ala	Glu	Val	Thr	Ser	Gly	Lys	Pro	Biniossek et al., 2011
Nuclear autoantigenic sperm protein	P49321	582-609	Peptide-Asn597+Ser-Peptide	N	MS	Tyr	Gly	Tyr	Asn	Ser	Gln	Tyr	Asp	Biniossek et al., 2011
Nuclear inhibitor of protein phosphatase 1	Q12972		peptide-Thr202+Phe-peptide	N	MS	Ser	Arg	Val	Thr	Phe	Ser	Glu	Asp	Vidmar et al., 2017
Nuclear migration protein nudC	Q9Y266	134-156	Peptide-Asp138+Ser-Peptide	N	MS	Gly	Ser	Leu	Asp	Ser	Pro	Gly	Lys	Biniossek et al., 2011
Nuclear migration protein nudC	Q9Y266		peptide-Ala92+Lys-peptide	N	MS	Ala	Arg	Leu	Ala	Lys	Glu	Ala	Lys	Vidmar et al., 2017
Nuclear migration protein nudC	Q9Y266		peptide-Met317+Asp-peptide	N	MS	Lys	Lys	Phe	Met	Asp	Gln	His	Pro	Vidmar et al., 2017
Nuclear migration protein nudC	Q9Y266		peptide-Gln26+Glu-peptide	N	MS	Gly	Gly	Val	Gln	Glu	Leu	Val	Asn	Vidmar et al., 2017
Nuclear migration protein nudC	Q9Y266		peptide-Gln116+Leu-peptide	N	MS	Glu	Arg	Leu	Gln	Leu	Glu	Ile	Asp	Vidmar et al., 2017
Nuclear migration protein nudC	Q9Y266		peptide-Gly300+Leu-peptide	N	MS	Lys	Ser	Met	Gly	Leu	Pro	Thr	Ser	Vidmar et al., 2017
Nuclear mitotic apparatus protein 1	Q14980		peptide-Arg924+Lys-peptide	N	MS	Thr	Leu	Val	Arg	Lys	Ala	Gly	Glu	Vidmar et al., 2017
Nuclear mitotic apparatus protein 1	Q14980		peptide-Gln625+Val-peptide	N	MS	Gln	Gln	Leu	Gln	Val	Ala	Asn	Glu	Vidmar et al., 2017
Nuclear pore complex protein Nup155	O75694	392-407	Peptide-Ser397+Ala-Peptide	N	MS	Pro	Gly	Phe	Ser	Ala	Ser	Ser	Thr	Biniossek et al., 2011
Nuclear receptor 2C2-associated protein	Q86WQ0	75-88	Peptide-Glu78+Gly-Peptide	N	MS	Gly	Cys	Leu	Glu	Gly	Ser	Gln	Gly	Biniossek et al., 2011
Nuclear transport factor 2	P61970	27-49	Peptide-Thr40+Trp-Peptide	N	MS	Ser	Cys	Leu	Thr	Trp	Glu	Gly	Gln	Biniossek et al., 2011
Nuclear transport factor 2	P61970	64-82	Peptide-Thr69+Ala-Peptide	N	MS	His	Ser	Ile	Thr	Ala	Gln	Asp	His	Biniossek et al., 2011
Nuclease-sensitive element-binding protein 1	P67809	2-43	Peptide-Ser21+Ala-Peptide	N	MS	Pro	Ala	Leu	Ser	Ala	Ala	Asp	Thr	Biniossek et al., 2011
Nuclease-sensitive element-binding protein 1	P67809	206-234	Peptide-Glu219+Gly-Peptide	N	MS	Glu	Val	Met	Glu	Gly	Ala	Asp	Asn	Biniossek et al., 2011
Nuclease-sensitive element-binding protein 1	P67809	157-185	Peptide-Gln163+Asn-Peptide	N	MS	Gln	Asn	Tyr	Gln	Asn	Ser	Glu	Ser	Biniossek et al., 2011
Nuclease-sensitive element-binding protein 1	P67809	157-185	Asn-Tyr-Gln159+Gln-Peptide	N	MS	-	Asn	Tyr	Gln	Gln	Asn	Tyr	Gln	Biniossek et al., 2011
Nuclease-sensitive element-binding protein 1	P67809	171-185	Peptide-Glu175+Ser-Peptide	N	MS	Glu	Gly	Ser	Glu	Ser	Ala	Pro	Glu	Biniossek et al., 2011
Nuclease-sensitive element-binding protein 1	P67809		peptide-Glu110+Phe-peptide	N	MS	Glu	Thr	Val	Glu	Phe	Asp	Val	Val	Vidmar et al., 2017
Nuclease-sensitive element-binding protein 1	P67809		peptide-Thr43+Ser-peptide	N	MS	Gly	Gly	Leu	Thr	Ser	Ala	Ala	Pro	Vidmar et al., 2017
Nuclease-sensitive element-binding protein 1	P67809		peptide-Arg253+Gln-peptide	N	MS	Pro	Arg	Gln	Arg	Gln	Pro	Arg	Glu	Vidmar et al., 2017
Nuclease-sensitive element-binding protein 1	P67809		peptide-Gly73+Phe-peptide	N	MS	Asn	Gly	Tyr	Gly	Phe	Ile	Asn	Arg	Vidmar et al., 2017
Nuclease-sensitive element-binding protein 1	P67809		peptide-Met218+Glu-peptide	N	MS	Gly	Glu	Val	Met	Glu	Gly	Ala	Asp	Vidmar et al., 2017
Nucleolar RNA helicase 2	Q9NR30	606-627	Peptide-Ala616+His-Peptide	N	MS	Ala	Ala	Leu	Ala	His	Ile	Ser	Gly	Biniossek et al., 2011
Nucleolin	P19338	611-623	Gly-Phe-Gly613+Phe-Peptide	N	MS	-	Gly	Phe	Gly	Phe	Val	Asp	Phe	Biniossek et al., 2011
Nucleolin	P19338	578-589	Gly-Leu-Ser580+Glu-Peptide	N	MS	-	Gly	Leu	Ser	Glu	Asp	Thr	Thr	Biniossek et al., 2011
Nucleolin	P19338		peptide-Thr105+Thr-peptide	N	MS	Lys	Ala	Val	Thr	Thr	Pro	Gly	Lys	Vidmar et al., 2017
Nucleolin	P19338		peptide-Thr346+Arg-peptide	N	MS	Ile	Gly	Met	Thr	Arg	Lys	Phe	Gly	Vidmar et al., 2017
Nucleolin	P19338		peptide-Asn308+Leu-peptide	N	MS	Thr	Ala	Phe	Asn	Leu	Phe	Val	Gly	Vidmar et al., 2017
Nucleolin	P19338		peptide-Lys577+Gly-peptide	N	MS	Leu	Phe	Val	Lys	Gly	Leu	Ser	Glu	Vidmar et al., 2017
Nucleolin	P19338		peptide-Val576+Lys-peptide	N	MS	Thr	Leu	Phe	Val	Lys	Gly	Leu	Ser	Vidmar et al., 2017
Nucleolin	P19338		peptide-Lys324+Thr-peptide	N	MS	Pro	Glu	Leu	Lys	Thr	Gly	Ile	Ser	Vidmar et al., 2017
Nucleolin	P19338		peptide-Lys589+Glu-peptide	N	MS	Glu	Thr	Leu	Lys	Glu	Ser	Phe	Asp	Vidmar et al., 2017
Nucleophosmin	P06748		peptide-Gly105+Ser-peptide	N	MS	Leu	Lys	Cys	Gly	Ser	Gly	Pro	Val	Vidmar et al., 2017
Nucleophosmin	P06748		peptide-Asp8+Met-peptide	N	MS	Met	Asp	Met	Asp	Met	Ser	Pro	Leu	Vidmar et al., 2017
Nucleophosmin	P06748		peptide-Arg277+Met-peptide	N	MS	Asn	Cys	Phe	Arg	Met	Thr	Asp	Gln	Vidmar et al., 2017
Nucleophosmin	P06748		peptide-Gly50+Ala-peptide	N	MS	Val	Ser	Leu	Gly	Ala	Gly	Ala	Lys	Vidmar et al., 2017
Nucleophosmin	P06748		peptide-Glu93+Ile-peptide	N	MS	Gly	Gly	Phe	Glu	Ile	Thr	Pro	Pro	Vidmar et al., 2017
Nucleophosmin	P06748		peptide-His110+Ile-peptide	N	MS	Gly	Pro	Val	His	Ile	Ser	Gly	Gln	Vidmar et al., 2017
Nucleophosmin	P06748		peptide-Asn66+Tyr-peptide	N	MS	Glu	Ala	Met	Asn	Tyr	Glu	Gly	Ser	Vidmar et al., 2017
Nucleophosmin	P06748		peptide-Lys24+Ala-peptide	N	MS	Cys	Glu	Leu	Lys	Ala	Asp	Lys	Asp	Vidmar et al., 2017
Nucleophosmin	P06748		peptide-Glu61+Ala-peptide	N	MS	His	Ile	Val	Glu	Ala	Glu	Ala	Met	Vidmar et al., 2017
Nucleophosmin	P06748		peptide-Gln285+Asp-peptide	N	MS	Glu	Ala	Ile	Gln	Asp	Leu	Trp	Gln	Vidmar et al., 2017
Nucleophosmin	P06748		peptide-Gln252+Ala-peptide	N	MS	Ala	Lys	Met	Gln	Ala	Ser	Ile	Glu	Vidmar et al., 2017
Nucleophosmin	P06748		peptide-Glu265+Ala-peptide	N	MS	Pro	Lys	Val	Glu	Ala	Lys	Phe	Ile	Vidmar et al., 2017
Nucleoside diphosphate kinase A	P15531		peptide-Gly131+Leu-peptide	N	MS	Lys	Glu	Ile	Gly	Leu	Trp	Phe	His	Vidmar et al., 2017
Nucleoside diphosphate kinase B	P22392	7-18	Thr-Phe-IIe9+Ala-Peptide	N	MS	-	Thr	Phe	Ile	Ala	Ile	Lys	Pro	Biniossek et al., 2011
Nucleoside diphosphate kinase B	P22392	89-105	Val-Met-Leu-Gly92+Glu-Peptide	N	MS	Val	Met	Leu	Gly	Glu	Thr	Asn	Pro	Biniossek et al., 2011
Nucleoside diphosphate kinase B	P22392	106-124	Peptide-Gly113+Arg-Peptide	N	MS	Ile	Gln	Val	Gly	Arg	Asn	Ile	Ile	Biniossek et al., 2011
Nucleoside diphosphate kinase B	P22392		peptide-Ala75+Met-peptide	N	MS	Pro	Val	Val	Ala	Met	Val	Trp	Glu	Vidmar et al., 2017
Nucleoside diphosphate kinase B	P22392		peptide-Lys143+Ser-peptide	N	MS	Val	Asp	Tyr	Lys	Ser	Cys	Ala	His	Vidmar et al., 2017
Nucleoside diphosphate kinase B	P22392		peptide-Trp133+Phe-peptide	N	MS	Ile	Ser	Leu	Trp	Phe	Lys	Pro	Glu	Vidmar et al., 2017
Nucleoside diphosphate kinase B	P22392		peptide-Ser131+Leu-peptide	N	MS	Lys	Glu	Ile	Ser	Leu	Trp	Phe	Lys	Vidmar et al., 2017
Nucleoside diphosphate kinase B	P22392		peptide-Lys56+Asp-peptide	N	MS	Ile	Asp	Leu	Lys	Asp	Arg	Pro	Phe	Vidmar et al., 2017
Nucleosome assembly protein 1-like 1	P55209	177-193	Peptide-Gln186+Glu-Peptide	N	MS	Asp	Met	Val	Gln	Glu	His	Asp	Glu	Biniossek et al., 2011
Nucleosome assembly protein 1-like 1	P55209		peptide-Asn122+Ala-peptide	N	MS	Glu	Ile	Ile	Asn	Ala	Ile	Tyr	Glu	Vidmar et al., 2017
Nucleosome assembly protein 1-like 1	P55209		peptide-Ser182+Asp-peptide	N	MS	Asp	Leu	Leu	Ser	Asp	Met	Val	Gln	Vidmar et al., 2017
Nucleosome assembly protein 1-like 1	P55209		peptide-Gln259+Ile-peptide	N	MS	Thr	Gly	Cys	Gln	Ile	Asp	Trp	Lys	Vidmar et al., 2017
Nucleosome assembly protein 1-like 1	P55209		peptide-Glu215+Phe-peptide	N	MS	Phe	Val	Leu	Glu	Phe	His	Phe	Glu	Vidmar et al., 2017
Nucleosome assembly protein 1-like 1	P55209		peptide-Val60+Glu-peptide	N	MS	Asp	Gly	Leu	Val	Glu	Thr	Pro	Thr	Vidmar et al., 2017
Nucleosome assembly protein 1-like 1	P55209		peptide-Leu109+Tyr-peptide	N	MS	Tyr	Ala	Val	Leu	Tyr	Gln	Pro	Leu	Vidmar et al., 2017
Nucleosome assembly protein 1-like 1	P55209		peptide-Glu133+Trp-peptide	N	MS	Glu	Glu	Cys	Glu	Trp	Lys	Pro	Asp	Vidmar et al., 2017
Nucleosome assembly protein 1-like 1	P55209		peptide-Ala321+Ala-peptide	N	MS	Ala	Ile	Leu	Ala	Ala	Asp	Phe	Glu	Vidmar et al., 2017
Nucleosome assembly protein 1-like 1	P55209		peptide-Arg331+Glu-peptide	N	MS	His	Phe	Leu	Arg	Glu	Arg	Ile	Ile	Vidmar et al., 2017
Nucleosome assembly protein 1-like 4	Q99733		peptide-Lys282+Gln-peptide	N	MS	Thr	Ile	Thr	Lys	Gln	Val	Pro	Asn	Vidmar et al., 2017
Nucleosome assembly protein 1-like 4	Q99733		peptide-Glu287+Ser-peptide	N	MS	Val	Pro	Asn	Glu	Ser	Phe	Phe	Asn	Vidmar et al., 2017
Obg-like ATPase 1	Q9NTK5		peptide-Cys55+Thr-peptide	N	MS	Phe	Pro	Phe	Cys	Thr	Ile	Asp	Pro	Vidmar et al., 2017
Obg-like ATPase 1	Q9NTK5		peptide-Gln153+Leu-peptide	N	MS	Glu	Glu	Leu	Gln	Leu	Lys	Asp	Glu	Vidmar et al., 2017
Obg-like ATPase 1	Q9NTK5		peptide-Glu136+Gly-peptide	N	MS	Thr	His	Val	Glu	Gly	Ser	Val	Asp	Vidmar et al., 2017
Obg-like ATPase 1	Q9NTK5		peptide-Thr56+Ile-peptide	N	MS	Pro	Phe	Cys	Thr	Ile	Asp	Pro	Asn	Vidmar et al., 2017
Obg-like ATPase 1	Q9NTK5		peptide-Glu61+Ser-peptide	N	MS	Asp	Pro	Asn	Glu	Ser	Arg	Val	Pro	Vidmar et al., 2017
Obg-like ATPase 1	Q9NTK5		peptide-Asn89+Val-peptide	N	MS	Ala	Phe	Leu	Asn	Val	Val	Asp	Ile	Vidmar et al., 2017
Obg-like ATPase 1	Q9NTK5		peptide-Lys190+Ser-peptide	N	MS	Cys	Lys	Val	Lys	Ser	Trp	Val	Ile	Vidmar et al., 2017
Obg-like ATPase 1	Q9NTK5		peptide-Gly34+Lys-peptide	N	MS	Pro	Asn	Val	Gly	Lys	Ser	Thr	Phe	Vidmar et al., 2017
Obg-like ATPase 1	Q9NTK5		peptide-Thr124+Arg-peptide	N	MS	Phe	His	Leu	Thr	Arg	Ala	Phe	Glu	Vidmar et al., 2017
OCIA domain-containing protein 1	Q9NX40		peptide-Glu154+Met-peptide	N	MS	Asp	Asn	Ile	Glu	Met	Leu	Pro	His	Vidmar et al., 2017
OCIA domain-containing protein 1	Q9NX40		peptide-Phe35+Ala-peptide	N	MS	Arg	Arg	Val	Phe	Ala	Glu	Cys	Asn	Vidmar et al., 2017
Ornithine aminotransferase, mitochondrial	P04181	114-129	Peptide-Leu120+Gly-Peptide	N	MS	Asn	Asn	Val	Leu	Gly	Glu	Tyr	Glu	Biniossek et al., 2011
Ornithine aminotransferase, mitochondrial	P04181	33-46	Thr-Val-Gln35+Gly-Peptide	N	MS	-	Thr	Val	Gln	Gly	Pro	Pro	Thr	Biniossek et al., 2011
osteocalcin	P02818	52-100	peptide-Gly58+Ala-peptide	P		Gln	Trp	Leu	Gly	Ala	Pro	Val	Pro	Baumgrass et al., 1997	3158
PDZ and LIM domain protein 1	O00151		peptide-Ala29+Ile-peptide	N	MS	Gln	Pro	Leu	Ala	Ile	Ser	Arg	Val	Vidmar et al., 2017
PDZ and LIM domain protein 1	O00151		peptide-Thr128+Ala-peptide	N	MS	Met	Pro	Phe	Thr	Ala	Ser	Pro	Ala	Vidmar et al., 2017
PDZ and LIM domain protein 1	O00151		peptide-Thr51+Ala-peptide	N	MS	Asp	Val	Ile	Thr	Ala	Ile	Asp	Gly	Vidmar et al., 2017
PDZ and LIM domain protein 1	O00151		peptide-Gln9+Gly-peptide	N	MS	Ile	Asp	Leu	Gln	Gly	Pro	Gly	Pro	Vidmar et al., 2017
PDZ and LIM domain protein 5	Q96HC4		peptide-Ser7+Leu-peptide	N	MS	Tyr	Ser	Val	Ser	Leu	Val	Gly	Pro	Vidmar et al., 2017
Peptidase M20 domain-containing protein 2	Q8IYS1	142-155	Gly-Ala-Leu-Glu145+Gly-Peptide	N	MS	Gly	Ala	Leu	Glu	Gly	Leu	Pro	Arg	Biniossek et al., 2011
Peptidyl-prolyl cis-trans isomerase A	P62937	56-69	Peptide-Met61+Cys-Peptide	N	MS	Pro	Gly	Phe	Met	Cys	Gln	Gly	Gly	Biniossek et al., 2011
Peptidyl-prolyl cis-trans isomerase A	P62937	2-19	Peptide-Phe8+Asp-Peptide	N	MS	Thr	Val	Phe	Phe	Asp	Ile	Ala	Val	Biniossek et al., 2011
Peptidyl-prolyl cis-trans isomerase A	P62937	2-19	Peptide-Asp9+IIe-Peptide	N	MS	Val	Phe	Phe	Asp	Ile	Ala	Val	Asp	Biniossek et al., 2011
Peptidyl-prolyl cis-trans isomerase A	P62937		peptide-Cys115+Thr-peptide	N	MS	Phe	Phe	Ile	Cys	Thr	Ala	Lys	Thr	Vidmar et al., 2017
Peptidyl-prolyl cis-trans isomerase A	P62937		peptide-Gln63+Gly-peptide	N	MS	Phe	Met	Cys	Gln	Gly	Gly	Asp	Phe	Vidmar et al., 2017
Peptidyl-prolyl cis-trans isomerase A	P62937		peptide-Gly47+Tyr-peptide	N	MS	Lys	Gly	Phe	Gly	Tyr	Lys	Gly	Ser	Vidmar et al., 2017
Peptidyl-prolyl cis-trans isomerase A	P62937		peptide-Arg37+Ala-peptide	N	MS	Glu	Asn	Phe	Arg	Ala	Leu	Ser	Thr	Vidmar et al., 2017
Peptidyl-prolyl cis-trans isomerase A	P62937		peptide-Thr116+Ala-peptide	N	MS	Phe	Ile	Cys	Thr	Ala	Lys	Thr	Glu	Vidmar et al., 2017
Peptidyl-prolyl cis-trans isomerase A	P62937		peptide-Lys133+Glu-peptide	N	MS	Gly	Lys	Val	Lys	Glu	Gly	Met	Asn	Vidmar et al., 2017
Peptidyl-prolyl cis-trans isomerase A	P62937		peptide-Gly146+Ser-peptide	N	MS	Glu	Arg	Phe	Gly	Ser	Arg	Asn	Gly	Vidmar et al., 2017
Peptidyl-prolyl cis-trans isomerase A	P62937		peptide-Cys62+Gln-peptide	N	MS	Gly	Phe	Met	Cys	Gln	Gly	Gly	Asp	Vidmar et al., 2017
Peptidyl-prolyl cis-trans isomerase A	P62937		peptide-Lys49+Gly-peptide	N	MS	Phe	Gly	Tyr	Lys	Gly	Ser	Cys	Phe	Vidmar et al., 2017
Peptidyl-prolyl cis-trans isomerase A	P62937		peptide-His54+Arg-peptide	N	MS	Ser	Cys	Phe	His	Arg	Ile	Ile	Pro	Vidmar et al., 2017
Peptidyl-prolyl cis-trans isomerase A	P62937		peptide-Ala26+Asp-peptide	N	MS	Glu	Leu	Phe	Ala	Asp	Lys	Val	Pro	Vidmar et al., 2017
Peptidyl-prolyl cis-trans isomerase A	P62937		peptide-Gly80+Glu-peptide	N	MS	Ser	Ile	Tyr	Gly	Glu	Lys	Phe	Glu	Vidmar et al., 2017
Peptidyl-prolyl cis-trans isomerase A	P62937		peptide-Phe53+His-peptide	N	MS	Gly	Ser	Cys	Phe	His	Arg	Ile	Ile	Vidmar et al., 2017
Peptidyl-prolyl cis-trans isomerase B	P23284		peptide-Ala200+Asp-peptide	N	MS	Val	Ile	Ile	Ala	Asp	Cys	Gly	Lys	Vidmar et al., 2017
Peptidyl-prolyl cis-trans isomerase B	P23284		peptide-Gly66+Lys-peptide	N	MS	Gly	Leu	Phe	Gly	Lys	Thr	Val	Pro	Vidmar et al., 2017
Peptidyl-prolyl cis-trans isomerase B	P23284		peptide-Arg51+Ile-peptide	N	MS	Phe	Asp	Leu	Arg	Ile	Gly	Asp	Glu	Vidmar et al., 2017
Peptidyl-prolyl cis-trans isomerase B	P23284		peptide-Gly120+Glu-peptide	N	MS	Ser	Ile	Tyr	Gly	Glu	Arg	Phe	Pro	Vidmar et al., 2017
Peptidyl-prolyl cis-trans isomerase B	P23284		peptide-Ser139+Met-peptide	N	MS	Gly	Trp	Val	Ser	Met	Ala	Asn	Ala	Vidmar et al., 2017
Peptidyl-prolyl cis-trans isomerase FKBP4	Q02790	296-313	Peptide-Glu303+Ser-Peptide	N	MS	Leu	Glu	Tyr	Glu	Ser	Ser	Phe	Ser	Biniossek et al., 2011
Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1	Q13526	22-46	Peptide-Thr29+Asn-Peptide	N	MS	Asn	His	Ile	Thr	Asn	Ala	Ser	Gln	Biniossek et al., 2011
Perilipin-3	O60664		peptide-Gln159+Ser-peptide	N	MS	Gly	Ala	Val	Gln	Ser	Gly	Val	Asp	Vidmar et al., 2017
Perilipin-3	O60664		peptide-Trp301+Leu-peptide	N	MS	His	Gln	Met	Trp	Leu	Ser	Trp	Asn	Vidmar et al., 2017
Perilipin-3	O60664		peptide-Ser126+Ser-peptide	N	MS	Glu	Leu	Val	Ser	Ser	Lys	Val	Ser	Vidmar et al., 2017
Perilipin-3	O60664		peptide-Ser24+Val-peptide	N	MS	Gln	Gln	Pro	Ser	Val	Val	Asp	Arg	Vidmar et al., 2017
Perilipin-3	O60664		peptide-Cys60+Asp-peptide	N	MS	Lys	Thr	Val	Cys	Asp	Ala	Ala	Glu	Vidmar et al., 2017
Perilipin-3	O60664		peptide-Ala90+Ser-peptide	N	MS	Pro	Gln	Ile	Ala	Ser	Ala	Ser	Glu	Vidmar et al., 2017
Peroxiredoxin-1	Q06830	69-84	Peptide-Gly75+Ala-Peptide	N	MS	Gln	Val	Ile	Gly	Ala	Ser	Val	Asp	Biniossek et al., 2011
Peroxiredoxin-1	Q06830		peptide-Gln164+Phe-peptide	N	MS	Gln	Ala	Phe	Gln	Phe	Thr	Asp	Lys	Vidmar et al., 2017
Peroxiredoxin-1	Q06830		peptide-Ala86+Trp-peptide	N	MS	Cys	His	Leu	Ala	Trp	Val	Asn	Thr	Vidmar et al., 2017
Peroxiredoxin-1	Q06830		peptide-Ser126+Phe-peptide	N	MS	Glu	Gly	Ile	Ser	Phe	Arg	Gly	Leu	Vidmar et al., 2017
Peroxiredoxin-1	Q06830		peptide-Val105+Ser-peptide	N	MS	Ile	Pro	Leu	Val	Ser	Asp	Pro	Lys	Vidmar et al., 2017
Peroxiredoxin-1	Q06830		peptide-His84+Leu-peptide	N	MS	His	Phe	Cys	His	Leu	Ala	Trp	Val	Vidmar et al., 2017
Peroxiredoxin-1	Q06830		peptide-Arg128+Gly-peptide	N	MS	Ile	Ser	Phe	Arg	Gly	Leu	Phe	Ile	Vidmar et al., 2017
Peroxiredoxin-1	Q06830		peptide-Gly176+Trp-peptide	N	MS	Cys	Pro	Ala	Gly	Trp	Lys	Pro	Gly	Vidmar et al., 2017
Peroxiredoxin-1	Q06830		peptide-Thr18+Ala-peptide	N	MS	Phe	Lys	Ala	Thr	Ala	Val	Met	Pro	Vidmar et al., 2017
Peroxiredoxin-1	Q06830		peptide-Gly150+Arg-peptide	N	MS	Leu	Pro	Val	Gly	Arg	Ser	Val	Asp	Vidmar et al., 2017
Peroxiredoxin-1	Q06830		peptide-Lys120+Ala-peptide	N	MS	Gly	Val	Leu	Lys	Ala	Asp	Glu	Gly	Vidmar et al., 2017
Peroxiredoxin-1	Q06830		peptide-Ser106+Asp-peptide	N	MS	Pro	Leu	Val	Ser	Asp	Pro	Lys	Arg	Vidmar et al., 2017
Peroxiredoxin-1	Q06830		peptide-Lys16+Ala-peptide	N	MS	Pro	Asn	Phe	Lys	Ala	Thr	Ala	Val	Vidmar et al., 2017
Peroxiredoxin-2	P32119		peptide-Gln163+Tyr-peptide	N	MS	Gln	Ala	Phe	Gln	Tyr	Thr	Asp	Glu	Vidmar et al., 2017
Peroxiredoxin-2	P32119		peptide-His83+Leu-peptide	N	MS	Gln	Phe	Thr	His	Leu	Ala	Trp	Ile	Vidmar et al., 2017
Peroxiredoxin-2	P32119		peptide-Ala85+Trp-peptide	N	MS	Thr	His	Leu	Ala	Trp	Ile	Asn	Thr	Vidmar et al., 2017
Peroxiredoxin-2	P32119		peptide-Gly149+Arg-peptide	N	MS	Leu	Pro	Val	Gly	Arg	Ser	Val	Asp	Vidmar et al., 2017
Peroxiredoxin-6	P30041	2-22	Peptide-Gly8+Asp-Peptide	N	MS	Leu	Leu	Leu	Gly	Asp	Val	Ala	Pro	Biniossek et al., 2011
Peroxiredoxin-6	P30041	183-200	Peptide-Val189+Leu-Peptide	N	MS	Ser	Val	Met	Val	Leu	Pro	Thr	Ile	Biniossek et al., 2011
Peroxiredoxin-6	P30041		peptide-Lys97+Leu-peptide	N	MS	Pro	Thr	Glu	Lys	Leu	Pro	Phe	Pro	Vidmar et al., 2017
Peroxiredoxin-6	P30041		peptide-Lys56+Leu-peptide	N	MS	Arg	Ala	Ala	Lys	Leu	Ala	Pro	Glu	Vidmar et al., 2017
Peroxiredoxin-6	P30041		peptide-Ala176+Thr-peptide	N	MS	Lys	Arg	Val	Ala	Thr	Pro	Val	Asp	Vidmar et al., 2017
Phenylalanine--tRNA ligase beta chain	Q9NSD9	384-395	Thr-Tyr-Thr386+IIe-Peptide	N	MS	-	Thr	Tyr	Thr	Ile	Ala	Asn	Gln	Biniossek et al., 2011
Phosphate carrier protein, mitochondrial	Q00325		peptide-Gln191+Thr-peptide	N	MS	Val	Arg	Ile	Gln	Thr	Gln	Pro	Gly	Vidmar et al., 2017
Phosphate carrier protein, mitochondrial	Q00325		peptide-Lys218+Gly-peptide	N	MS	Ala	Phe	Tyr	Lys	Gly	Val	Ala	Pro	Vidmar et al., 2017
Phosphate carrier protein, mitochondrial	Q00325		peptide-Arg201+Asp-peptide	N	MS	Asn	Thr	Leu	Arg	Asp	Ala	Ala	Pro	Vidmar et al., 2017
Phosphatidylethanolamine-binding protein 1	P30086	8-39	Peptide-Thr28+Tyr-Peptide	N	MS	Leu	His	Val	Thr	Tyr	Ala	Gly	Ala	Biniossek et al., 2011
Phosphatidylethanolamine-binding protein 1	P30086	8-28	Peptide-Asp18+Glu-Peptide	N	MS	Gln	Glu	Val	Asp	Glu	Gln	Pro	Gln	Biniossek et al., 2011
Phosphatidylethanolamine-binding protein 1	P30086		peptide-Asn91+Met-peptide	N	MS	Leu	Val	Val	Asn	Met	Lys	Gly	Asn	Vidmar et al., 2017
Phosphatidylethanolamine-binding protein 1	P30086		peptide-Gln170+Ala-peptide	N	MS	Thr	Cys	Tyr	Gln	Ala	Glu	Trp	Asp	Vidmar et al., 2017
Phosphatidylethanolamine-binding protein 1	P30086		peptide-Ser13+Leu-peptide	N	MS	Gly	Pro	Leu	Ser	Leu	Gln	Glu	Val	Vidmar et al., 2017
Phosphatidylinositol-binding clathrin assembly protein	Q13492	497-529	Peptide-Ala519+Ser-Peptide	N	MS	Pro	Thr	Val	Ala	Ser	Gln	Asn	Gln	Biniossek et al., 2011
Phosphoglucomutase-2	Q96G03	520-533	Asp-Leu-Thr522+Thr-Peptide	N	MS	-	Asp	Leu	Thr	Thr	Gly	Tyr	Asp	Biniossek et al., 2011
Phosphoglycerate kinase 1	P00558	280-297	Peptide-Thr288+Ala-Peptide	N	MS	Asp	Phe	Val	Thr	Ala	Asp	Lys	Phe	Biniossek et al., 2011
Phosphoglycerate kinase 1	P00558	366-382	Peptide-Gly372+Gly-Peptide	N	MS	Thr	Ile	Ile	Gly	Gly	Gly	Asp	Thr	Biniossek et al., 2011
Phosphoglycerate kinase 1	P00558	298-323	Peptide-Met312+Gly-Peptide	N	MS	Ala	Gly	Trp	Met	Gly	Leu	Asp	Cys	Biniossek et al., 2011
Phosphoglycerate kinase 1	P00558	57-75	Peptide-Leu64+Gly-Peptide	N	MS	Met	Ser	His	Leu	Gly	Arg	Pro	Asp	Biniossek et al., 2011
Phosphoglycerate kinase 1	P00558	247-264	Peptide-Glu252+IIe-Peptide	N	MS	Asn	Asn	Met	Glu	Ile	Gly	Thr	Ser	Biniossek et al., 2011
Phosphoglycerate kinase 1	P00558	366-382	Gly-Cys-IIe-Thr369+IIe-Peptide	N	MS	Gly	Cys	Ile	Thr	Ile	Ile	Gly	Gly	Biniossek et al., 2011
Phosphoglycerate kinase 1	P00558	57-76	Peptide-Gly65+Arg-Peptide	N	MS	Ser	His	Leu	Gly	Arg	Pro	Asp	Gly	Biniossek et al., 2011
Phosphoglycerate kinase 1	P00558	247-264	Peptide-Gly254+Thr-Peptide	N	MS	Met	Glu	Ile	Gly	Thr	Ser	Leu	Phe	Biniossek et al., 2011
Phosphoglycerate kinase 1	P00558	280-297	Peptide-Ala289+Asp-Peptide	N	MS	Phe	Val	Thr	Ala	Asp	Lys	Phe	Asp	Biniossek et al., 2011
Phosphoglycerate kinase 1	P00558		peptide-Trp336+Asn-peptide	N	MS	Gln	Ile	Val	Trp	Asn	Gly	Pro	Val	Vidmar et al., 2017
Phosphoglycerate kinase 1	P00558		peptide-Asn163+Asp-peptide	N	MS	Val	Tyr	Val	Asn	Asp	Ala	Phe	Gly	Vidmar et al., 2017
Phosphoglycerate kinase 1	P00558		peptide-Lys361+Ala-peptide	N	MS	Glu	Val	Val	Lys	Ala	Thr	Ser	Arg	Vidmar et al., 2017
Phosphoglycerate kinase 1	P00558		peptide-Lys48+Phe-peptide	N	MS	Pro	Ser	Ile	Lys	Phe	Cys	Leu	Asp	Vidmar et al., 2017
Phosphoglycerate kinase 1	P00558		peptide-Glu404+Gly-peptide	N	MS	Glu	Leu	Leu	Glu	Gly	Lys	Val	Leu	Vidmar et al., 2017
Phosphoglycerate kinase 1	P00558		peptide-Ala241+Phe-peptide	N	MS	Gly	Gly	Met	Ala	Phe	Thr	Phe	Leu	Vidmar et al., 2017
Phosphoglycerate kinase 1	P00558		peptide-Arg123+Phe-peptide	N	MS	Glu	Asn	Leu	Arg	Phe	His	Val	Glu	Vidmar et al., 2017
Phosphoglycerate kinase 1	P00558		peptide-Cys380+Ala-peptide	N	MS	Ala	Thr	Cys	Cys	Ala	Lys	Trp	Asn	Vidmar et al., 2017
Phosphoglycerate kinase 1	P00558		peptide-Gly341+Val-peptide	N	MS	Gly	Pro	Val	Gly	Val	Phe	Glu	Trp	Vidmar et al., 2017
Phosphoglycerate kinase 1	P00558		peptide-Asp315+Cys-peptide	N	MS	Met	Gly	Leu	Asp	Cys	Gly	Pro	Glu	Vidmar et al., 2017
Phosphoglycerate kinase 1	P00558		peptide-Asn180+Leu-peptide	N	MS	Val	Gly	Val	Asn	Leu	Pro	Gln	Lys	Vidmar et al., 2017
Phosphoglycerate kinase 1	P00558		peptide-Lys41+Ala-peptide	N	MS	Gln	Arg	Ile	Lys	Ala	Ala	Val	Pro	Vidmar et al., 2017
Phosphoglycerate kinase 1	P00558		peptide-Gly178+Val-peptide	N	MS	Ser	Met	Val	Gly	Val	Asn	Leu	Pro	Vidmar et al., 2017
Phosphoglycerate kinase 1	P00558		peptide-Glu143+Pro-peptide	N	MS	Val	Lys	Ala	Glu	Pro	Ala	Lys	Ile	Vidmar et al., 2017
Phosphoglycerate kinase 1	P00558		peptide-Glu105+Lys-peptide	N	MS	Pro	Glu	Val	Glu	Lys	Ala	Cys	Ala	Vidmar et al., 2017
Phosphoglycerate kinase 1	P00558		peptide-Met21+Arg-peptide	N	MS	Arg	Val	Val	Met	Arg	Val	Asp	Phe	Vidmar et al., 2017
Phosphoglycerate kinase 1	P00558		peptide-Arg22+Val-peptide	N	MS	Val	Val	Met	Arg	Val	Asp	Phe	Asn	Vidmar et al., 2017
Phosphoglycerate kinase 1	P00558		peptide-Cys50+Leu-peptide	N	MS	Ile	Lys	Phe	Cys	Leu	Asp	Asn	Gly	Vidmar et al., 2017
Phosphoglycerate kinase 1	P00558		peptide-Leu403+Glu-peptide	N	MS	Leu	Glu	Leu	Leu	Glu	Gly	Lys	Val	Vidmar et al., 2017
Phosphoglycerate kinase 1	P00558		peptide-Met61+Ser-peptide	N	MS	Val	Val	Leu	Met	Ser	His	Leu	Gly	Vidmar et al., 2017
Phosphoglycerate kinase 1	P00558		peptide-Gln222+Leu-peptide	N	MS	Asp	Lys	Ile	Gln	Leu	Ile	Asn	Asn	Vidmar et al., 2017
Phosphoglycerate kinase 1	P00558		peptide-Thr8+Leu-peptide	N	MS	Asn	Lys	Leu	Thr	Leu	Asp	Lys	Leu	Vidmar et al., 2017
Phosphoglycerate kinase 1	P00558		peptide-Lys30+Asn-peptide	N	MS	Val	Pro	Met	Lys	Asn	Asn	Gln	Ile	Vidmar et al., 2017
Phosphoglycerate kinase 2	P07205	389-403	Peptide-Ser393+Thr-Peptide	N	MS	Ser	His	Val	Ser	Thr	Gly	Gly	Gly	Biniossek et al., 2011
Phosphoglycerate mutase 1	P18669		peptide-Asp120+Val-peptide	N	MS	Arg	Ser	Tyr	Asp	Val	Pro	Pro	Pro	Vidmar et al., 2017
Phosphoglycerate mutase 1	P18669		peptide-Thr146+Glu-peptide	N	MS	Ala	Asp	Leu	Thr	Glu	Asp	Gln	Leu	Vidmar et al., 2017
Phosphoglycerate mutase 1	P18669		peptide-Arg191+Gly-peptide	N	MS	Asn	Ser	Leu	Arg	Gly	Ile	Val	Lys	Vidmar et al., 2017
Phosphoglycerate mutase 1	P18669		peptide-Leu8+Ile-peptide	N	MS	Lys	Leu	Val	Leu	Ile	Arg	His	Gly	Vidmar et al., 2017
Phosphoglycerate mutase 1	P18669		peptide-Arg162+Ala-peptide	N	MS	Thr	Ile	Ala	Arg	Ala	Leu	Pro	Phe	Vidmar et al., 2017
Phosphoglycerate mutase 1	P18669		peptide-Tyr133+Ser-peptide	N	MS	His	Pro	Phe	Tyr	Ser	Asn	Ile	Ser	Vidmar et al., 2017
Phosphoglycerate mutase 1	P18669		peptide-Leu71+Asp-peptide	N	MS	Trp	Thr	Val	Leu	Asp	Ala	Ile	Asp	Vidmar et al., 2017
Phosphoglycerate mutase 1	P18669		peptide-Gly234+Asp-peptide	N	MS	Gln	Phe	Leu	Gly	Asp	Glu	Glu	Thr	Vidmar et al., 2017
Phosphoglycerate mutase 1	P18669		peptide-Ala161+Arg-peptide	N	MS	Asp	Thr	Ile	Ala	Arg	Ala	Leu	Pro	Vidmar et al., 2017
Phosphoglycerate mutase 1	P18669		peptide-Gln231+Phe-peptide	N	MS	Lys	Pro	Met	Gln	Phe	Leu	Gly	Asp	Vidmar et al., 2017
Phosphoglycerate mutase 1	P18669		peptide-Tyr218+Glu-peptide	N	MS	Pro	Ile	Val	Tyr	Glu	Leu	Asp	Lys	Vidmar et al., 2017
Phosphoglycerate mutase 1	P18669		peptide-Ser23+Gly-peptide	N	MS	Asn	Arg	Phe	Ser	Gly	Trp	Tyr	Asp	Vidmar et al., 2017
Phosphoglycerate mutase 2	P15259	223-241	Peptide-Gln231+Phe-Peptide	N	MS	Lys	Pro	Met	Gln	Phe	Leu	Gly	Asp	Biniossek et al., 2011
Phosphoribosylformylglycinamidine synthase	O15067	508-527	Peptide-Ser513+Leu-Peptide	N	MS	Pro	Ile	Cys	Ser	Leu	His	Asp	Gln	Biniossek et al., 2011
Phosphoribosylformylglycinamidine synthase	O15067	508-527	Peptide-Cys512+Ser-Peptide	N	MS	Asn	Pro	Ile	Cys	Ser	Leu	His	Asp	Biniossek et al., 2011
Phosphorylated adapter RNA export protein	Q9H814	94-112	Peptide-Gly100+Gln-Peptide	N	MS	Phe	Gln	Phe	Gly	Gln	Ser	Ser	Gln	Biniossek et al., 2011
Phosphoserine aminotransferase	Q9Y617	118-127	Phe-Gly119+Thr-Peptide	N	MS	-	-	Phe	Gly	Thr	Ile	Asn	Ile	Biniossek et al., 2011
Phosphotriesterase-related protein	Q96BW5	183-204	Peptide-Gly195+Cys-Peptide	N	MS	Ala	Gln	Leu	Gly	Cys	Pro	Val	Ile	Biniossek et al., 2011
Pituitary tumor-transforming gene 1 protein-interacting protein	P53801		peptide-Lys169+Glu-peptide	N	MS	Gly	Leu	Phe	Lys	Glu	Glu	Asn	Pro	Vidmar et al., 2017
Plasminogen	P00747	20-810	Peptide-Leu469+Leu-Peptide	P	NT	Pro	Val	Val	Leu	Leu	Pro	Asp	Val	Coppini et al., 2010
Plasminogen activator inhibitor 1 RNA-binding protein	Q8NC51	53-68	Ser-Ala-Ala55+Gln-Peptide	N	MS	-	Ser	Ala	Ala	Gln	Ala	Ala	Ala	Biniossek et al., 2011
Plasminogen activator inhibitor 1 RNA-binding protein	Q8NC51	241-268	Peptide-Thr255+Glu-Peptide	N	MS	Ser	Asn	Val	Thr	Glu	Glu	Thr	Pro	Biniossek et al., 2011
Plasminogen activator inhibitor 1 RNA-binding protein	Q8NC51	241-268	Peptide-Glu256+Glu-Peptide	N	MS	Asn	Val	Thr	Glu	Glu	Thr	Pro	Glu	Biniossek et al., 2011
Plasminogen activator inhibitor 1 RNA-binding protein	Q8NC51		peptide-Gln118+Gly-peptide	N	MS	Gln	Gln	Leu	Gln	Gly	Glu	Gly	Lys	Vidmar et al., 2017
Plasminogen activator inhibitor 1 RNA-binding protein	Q8NC51		peptide-Thr14+Asn-peptide	N	MS	Cys	Val	Val	Thr	Asn	Arg	Phe	Asp	Vidmar et al., 2017
Plasminogen activator inhibitor 1 RNA-binding protein	Q8NC51		peptide-Gly87+Val-peptide	N	MS	Pro	Ser	Val	Gly	Val	Val	Asp	Lys	Vidmar et al., 2017
Plasminogen activator inhibitor 1 RNA-binding protein	Q8NC51		peptide-Glu143+Glu-peptide	N	MS	Lys	Pro	Leu	Glu	Glu	Lys	Gly	Glu	Vidmar et al., 2017
Plastin-3	P13797	1-18	Peptide-Thr7+Gln-Peptide	N	MS	Met	Ala	Thr	Thr	Gln	Ile	Ser	Lys	Biniossek et al., 2011
Plastin-3	P13797	101-126	Peptide-Ser113+Ser-Peptide	N	MS	Ser	Glu	Leu	Ser	Ser	Glu	Gly	Thr	Biniossek et al., 2011
Plastin-3	P13797	405-420	Peptide-Gly411+Val-Peptide	N	MS	Asn	Ser	Leu	Gly	Val	Asn	Pro	His	Biniossek et al., 2011
Plectin	Q15149		peptide-Arg1744+Glu-peptide	N	MS	Ala	Gln	Leu	Arg	Glu	Glu	Ala	Glu	Vidmar et al., 2017
Plectin	Q15149		peptide-Glu4181+Ala-peptide	N	MS	Arg	Leu	Leu	Glu	Ala	Gln	Ile	Ala	Vidmar et al., 2017
Plectin	Q15149		peptide-Ala1488+Glu-peptide	N	MS	Glu	Arg	Leu	Ala	Glu	Gln	Gln	Arg	Vidmar et al., 2017
Plectin	Q15149		peptide-Thr1467+Ser-peptide	N	MS	Thr	Thr	Leu	Thr	Ser	Gln	Tyr	Ile	Vidmar et al., 2017
Plectin	Q15149		peptide-Ala2758+Ala-peptide	N	MS	Ser	Gln	Val	Ala	Ala	Thr	Lys	Thr	Vidmar et al., 2017
Plectin	Q15149		peptide-Lys253+Leu-peptide	N	MS	Arg	Gln	Val	Lys	Leu	Val	Asn	Ile	Vidmar et al., 2017
Plectin	Q15149		peptide-Thr4186+Gly-peptide	N	MS	Gln	Ile	Ala	Thr	Gly	Gly	Ile	Ile	Vidmar et al., 2017
Plectin	Q15149		peptide-Lys4152+Asp-peptide	N	MS	Thr	Gly	Tyr	Lys	Asp	Pro	Tyr	Ser	Vidmar et al., 2017
Plectin	Q15149		peptide-Phe330+Asn-peptide	N	MS	Gly	Arg	Leu	Phe	Asn	Ala	Ile	Ile	Vidmar et al., 2017
Plectin	Q15149		peptide-Leu3941+Ala-peptide	N	MS	Asp	Ala	Gln	Leu	Ala	Thr	Gly	Gly	Vidmar et al., 2017
Plectin	Q15149		peptide-Ala667+Trp-peptide	N	MS	Asp	Leu	Leu	Ala	Trp	Val	Glu	Glu	Vidmar et al., 2017
Plectin	Q15149		peptide-Gln1716+Ser-peptide	N	MS	Ala	Glu	Leu	Gln	Ser	Lys	Arg	Ala	Vidmar et al., 2017
Plectin	Q15149		peptide-Glu803+Leu-peptide	N	MS	Arg	Glu	Leu	Glu	Leu	Lys	Glu	Lys	Vidmar et al., 2017
Plectin	Q15149		peptide-Arg3999+Arg-peptide	N	MS	Gln	Leu	Leu	Arg	Arg	Cys	Arg	Arg	Vidmar et al., 2017
Plectin	Q15149		peptide-Gln2533+Ala-peptide	N	MS	Ser	Arg	Ala	Gln	Ala	Arg	Ala	Glu	Vidmar et al., 2017
Plectin	Q15149		peptide-Gly3222+Leu-peptide	N	MS	Val	Arg	Ala	Gly	Leu	Val	Gly	Pro	Vidmar et al., 2017
Plectin	Q15149		peptide-Arg1145+Leu-peptide	N	MS	His	Arg	Leu	Arg	Leu	Pro	Leu	Asp	Vidmar et al., 2017
Plectin	Q15149		peptide-Leu3275+Ser-peptide	N	MS	Asp	Ala	Gln	Leu	Ser	Thr	Gly	Gly	Vidmar et al., 2017
Plectin	Q15149		peptide-Glu3196+Ala-peptide	N	MS	Ala	Leu	Leu	Glu	Ala	Gln	Ala	Gly	Vidmar et al., 2017
Plectin	Q15149		peptide-Gly573+Glu-peptide	N	MS	Gln	Arg	Ala	Gly	Glu	Val	Glu	Arg	Vidmar et al., 2017
Plectin	Q15149		peptide-Arg3145+Asp-peptide	N	MS	Arg	Ser	Val	Arg	Asp	Val	Ala	Glu	Vidmar et al., 2017
Plectin	Q15149		peptide-Gln966+Leu-peptide	N	MS	Asp	Glu	Cys	Gln	Leu	Val	Gly	Pro	Vidmar et al., 2017
Plectin	Q15149		peptide-Arg1822+Gln-peptide	N	MS	Gln	Ala	Val	Arg	Gln	Arg	Glu	Leu	Vidmar et al., 2017
Plectin	Q15149		peptide-Glu4105+Ala-peptide	N	MS	Glu	Leu	Leu	Glu	Ala	Gln	Ala	Ala	Vidmar et al., 2017
Plectin	Q15149		peptide-Gln2236+Ala-peptide	N	MS	Ala	Arg	Val	Gln	Ala	Glu	Arg	Glu	Vidmar et al., 2017
Plectin	Q15149		peptide-Ala3942+Thr-peptide	N	MS	Ala	Gln	Leu	Ala	Thr	Gly	Gly	Ile	Vidmar et al., 2017
Plectin	Q15149		peptide-Arg2295+Gln-peptide	N	MS	Ala	Ala	Leu	Arg	Gln	Lys	Gln	Ala	Vidmar et al., 2017
Plectin	Q15149		peptide-Ser3276+Thr-peptide	N	MS	Ala	Gln	Leu	Ser	Thr	Gly	Gly	Ile	Vidmar et al., 2017
Plectin	Q15149		peptide-Tyr396+Asp-peptide	N	MS	Ser	Ser	Leu	Tyr	Asp	Ala	Met	Pro	Vidmar et al., 2017
Plectin	Q15149		peptide-Lys1986+Thr-peptide	N	MS	Thr	Arg	Leu	Lys	Thr	Glu	Ala	Glu	Vidmar et al., 2017
Plectin	Q15149		peptide-Gly4131+Ile-peptide	N	MS	Val	Arg	Met	Gly	Ile	Val	Gly	Pro	Vidmar et al., 2017
Plectin	Q15149		peptide-Gln1132+Leu-peptide	N	MS	Ile	Arg	Leu	Gln	Leu	Glu	Ala	Cys	Vidmar et al., 2017
Plectin	Q15149		peptide-Val2686+Ala-peptide	N	MS	Gln	Arg	Leu	Val	Ala	Ser	Met	Glu	Vidmar et al., 2017
Plectin	Q15149		peptide-Ser3309+Ala-peptide	N	MS	Arg	Ala	Leu	Ser	Ala	Pro	Arg	Ala	Vidmar et al., 2017
Plectin	Q15149		peptide-Arg821+Glu-peptide	N	MS	Arg	Leu	Leu	Arg	Glu	Asp	His	Pro	Vidmar et al., 2017
Plectin	Q15149		peptide-Lys3258+Lys-peptide	N	MS	Gln	Ala	Leu	Lys	Lys	Gly	Leu	Ile	Vidmar et al., 2017
Plectin	Q15149		peptide-Ala2007+Glu-peptide	N	MS	Arg	Arg	Leu	Ala	Glu	Asp	Glu	Ala	Vidmar et al., 2017
Plectin	Q15149		peptide-Gln2185+Ala-peptide	N	MS	Lys	Arg	Leu	Gln	Ala	Glu	Glu	Lys	Vidmar et al., 2017
Plectin	Q15149		peptide-Thr4531+Gly-peptide	N	MS	Gln	Tyr	Leu	Thr	Gly	Gly	Leu	Ile	Vidmar et al., 2017
Plectin	Q15149		peptide-Glu1705+Thr-peptide	N	MS	Val	Ala	Leu	Glu	Thr	Ala	Gln	Arg	Vidmar et al., 2017
Plectin	Q15149		peptide-Arg1586+Ile-peptide	N	MS	Ser	Arg	Leu	Arg	Ile	Glu	Glu	Glu	Vidmar et al., 2017
Plectin	Q15149		peptide-Lys2068+Ala-peptide	N	MS	Leu	Ala	Leu	Lys	Ala	Ser	Phe	Glu	Vidmar et al., 2017
Plectin	Q15149		peptide-Ser2802+Ala-peptide	N	MS	Gly	Ile	Leu	Ser	Ala	Glu	Glu	Leu	Vidmar et al., 2017
Plectin	Q15149		peptide-Lys4173+Asp-peptide	N	MS	Leu	Ile	Leu	Lys	Asp	His	Gly	Ile	Vidmar et al., 2017
Plectin	Q15149		peptide-Lys1659+Ala-peptide	N	MS	Ser	Arg	Val	Lys	Ala	Glu	Ala	Glu	Vidmar et al., 2017
Plectin	Q15149		peptide-Thr4470+Asp-peptide	N	MS	Phe	Pro	Val	Thr	Asp	Ala	Val	Asn	Vidmar et al., 2017
Plectin	Q15149		peptide-Lys4205+Arg-peptide	N	MS	Val	Ala	Tyr	Lys	Arg	Gly	Leu	Phe	Vidmar et al., 2017
Plectin	Q15149		peptide-Arg1690+Gln-peptide	N	MS	Arg	Arg	Leu	Arg	Gln	Ala	Glu	Val	Vidmar et al., 2017
Plectin	Q15149		peptide-Lys2411+Gln-peptide	N	MS	Glu	Lys	Met	Lys	Gln	Val	Ala	Glu	Vidmar et al., 2017
Plectin	Q15149		peptide-Thr4432+Glu-peptide	N	MS	Val	Ser	Ile	Thr	Glu	Ala	Met	His	Vidmar et al., 2017
Plectin	Q15149		peptide-Gly1357+Ala-peptide	N	MS	Asp	Pro	Leu	Gly	Ala	Trp	Leu	Gln	Vidmar et al., 2017
Plectin	Q15149		peptide-Gln2607+Leu-peptide	N	MS	Lys	Leu	Leu	Gln	Leu	Lys	Ser	Glu	Vidmar et al., 2017
Plectin	Q15149		peptide-Thr4455+Gly-peptide	N	MS	Gln	Ala	Cys	Thr	Gly	Gly	Ile	Ile	Vidmar et al., 2017
Plectin	Q15149		peptide-Arg3981+Ser-peptide	N	MS	Ser	Glu	Val	Arg	Ser	Tyr	Val	Asp	Vidmar et al., 2017
Plectin	Q15149		peptide-Phe2991+Asp-peptide	N	MS	Lys	Gly	Phe	Phe	Asp	Pro	Asn	Thr	Vidmar et al., 2017
Plectin	Q15149		peptide-Lys3182+Lys-peptide	N	MS	Asn	Ala	Leu	Lys	Lys	Asp	Leu	Leu	Vidmar et al., 2017
Plectin	Q15149		peptide-Glu2654+Gln-peptide	N	MS	Ala	Lys	Leu	Glu	Gln	Leu	Phe	Gln	Vidmar et al., 2017
Plectin	Q15149		peptide-Arg2004+Arg-peptide	N	MS	Glu	Arg	Leu	Arg	Arg	Leu	Ala	Glu	Vidmar et al., 2017
Plectin	Q15149		peptide-Lys3924+Lys-peptide	N	MS	Gln	Ala	Met	Lys	Lys	Glu	Leu	Ile	Vidmar et al., 2017
Plectin	Q15149		peptide-Ala1513+Glu-peptide	N	MS	Arg	Gln	Leu	Ala	Glu	Ala	His	Ala	Vidmar et al., 2017
Plectin	Q15149		peptide-Gln1535+Glu-peptide	N	MS	Gln	Arg	Met	Gln	Glu	Glu	Val	Val	Vidmar et al., 2017
Plectin	Q15149		peptide-Gln3962+Arg-peptide	N	MS	Val	Ala	Tyr	Gln	Arg	Gly	Tyr	Leu	Vidmar et al., 2017
Plectin	Q15149		peptide-Gln813+Asn-peptide	N	MS	Lys	Glu	Leu	Gln	Asn	Ala	Gly	Asp	Vidmar et al., 2017
Plectin	Q15149		peptide-Gln4550+Arg-peptide	N	MS	Glu	Ala	Leu	Gln	Arg	Gly	Thr	Val	Vidmar et al., 2017
Plectin	Q15149		peptide-Gln2502+Arg-peptide	N	MS	Gln	Gly	Phe	Gln	Arg	Thr	Leu	Glu	Vidmar et al., 2017
Plectin	Q15149		peptide-Leu563+Ala-peptide	N	MS	Val	Arg	Leu	Leu	Ala	Ala	Gly	Lys	Vidmar et al., 2017
Plectin	Q15149		peptide-Arg2316+Gln-peptide	N	MS	Gln	Thr	Leu	Arg	Gln	Lys	Ala	Gln	Vidmar et al., 2017
Plectin	Q15149		peptide-Leu1188+Ala-peptide	N	MS	Glu	Lys	Val	Leu	Ala	Leu	Pro	Glu	Vidmar et al., 2017
Plectin	Q15149		peptide-Arg522+Ser-peptide	N	MS	Lys	Gln	Leu	Arg	Ser	Glu	Phe	Glu	Vidmar et al., 2017
Plectin	Q15149		peptide-Arg1934+Glu-peptide	N	MS	Gly	Arg	Phe	Arg	Glu	Leu	Ala	Glu	Vidmar et al., 2017
Plectin	Q15149		peptide-Thr3880+Val-peptide	N	MS	Glu	Arg	Leu	Thr	Val	Asp	Glu	Ala	Vidmar et al., 2017
Plectin	Q15149		peptide-Met4242+Glu-peptide	N	MS	Leu	Gln	Leu	Met	Glu	Arg	Cys	Ile	Vidmar et al., 2017
Plectin	Q15149		peptide-Glu2333+Glu-peptide	N	MS	Leu	Gln	Leu	Glu	Glu	Thr	Asp	His	Vidmar et al., 2017
Plectin	Q15149		peptide-Thr4053+Ser-peptide	N	MS	Glu	Gly	Leu	Thr	Ser	Ile	Glu	Glu	Vidmar et al., 2017
Plectin	Q15149		peptide-Arg1679+Leu-peptide	N	MS	Glu	Glu	Leu	Arg	Leu	Gln	Ala	Glu	Vidmar et al., 2017
Plectin	Q15149		peptide-Arg2276+Lys-peptide	N	MS	Glu	Lys	Leu	Arg	Lys	Glu	Ala	Glu	Vidmar et al., 2017
Plectin	Q15149		peptide-Gln3366+Ala-peptide	N	MS	Ser	Glu	Leu	Gln	Ala	Arg	Glu	Thr	Vidmar et al., 2017
Plectin	Q15149		peptide-Leu589+Phe-peptide	N	MS	Ile	Arg	Leu	Leu	Phe	Asn	Asp	Val	Vidmar et al., 2017
Plectin	Q15149		peptide-Glu3006+Arg-peptide	N	MS	Gln	Leu	Leu	Glu	Arg	Cys	Val	Glu	Vidmar et al., 2017
Plectin	Q15149		peptide-Arg3886+Lys-peptide	N	MS	Glu	Ala	Val	Arg	Lys	Gly	Leu	Val	Vidmar et al., 2017
Plectin	Q15149		peptide-Leu341+Ile-peptide	N	MS	Lys	Pro	Leu	Leu	Ile	Asp	Met	Asn	Vidmar et al., 2017
Plectin	Q15149		peptide-Glu3125+Ser-peptide	N	MS	Glu	Leu	Leu	Glu	Ser	Arg	Val	Ile	Vidmar et al., 2017
Plectin	Q15149		peptide-Phe993+Leu-peptide	N	MS	Ser	Val	Cys	Phe	Leu	Val	Pro	Pro	Vidmar et al., 2017
Plectin	Q15149		peptide-Ser3461+Arg-peptide	N	MS	Gly	Val	Leu	Ser	Arg	Ala	Gln	Phe	Vidmar et al., 2017
Plectin	Q15149		peptide-Glu2018+Glu-peptide	N	MS	Arg	Arg	Leu	Glu	Glu	Gln	Ala	Ala	Vidmar et al., 2017
Plectin	Q15149		peptide-Ala1189+Leu-peptide	N	MS	Lys	Val	Leu	Ala	Leu	Pro	Glu	Pro	Vidmar et al., 2017
Plectin	Q15149		peptide-Ala1977+Ala-peptide	N	MS	Glu	Lys	Leu	Ala	Ala	Ile	Gly	Glu	Vidmar et al., 2017
Plectin	Q15149		peptide-Gln2174+Leu-peptide	N	MS	Arg	Gln	Leu	Gln	Leu	Ala	Gln	Glu	Vidmar et al., 2017
Plectin	Q15149		peptide-Ala2810+Gln-peptide	N	MS	Gln	Arg	Leu	Ala	Gln	Gly	His	Thr	Vidmar et al., 2017
Plectin	Q15149		peptide-Ala1847+Ala-peptide	N	MS	Gln	Arg	Leu	Ala	Ala	Glu	Gln	Glu	Vidmar et al., 2017
Plectin	Q15149		peptide-Leu3460+Ser-peptide	N	MS	Ser	Gly	Val	Leu	Ser	Arg	Ala	Gln	Vidmar et al., 2017
Plectin	Q15149		peptide-Leu2905+Ser-peptide	N	MS	His	Lys	Leu	Leu	Ser	Ala	Glu	Arg	Vidmar et al., 2017
Plectin	Q15149		peptide-Arg1616+Ala-peptide	N	MS	Gln	Ala	Leu	Arg	Ala	Arg	Ala	Glu	Vidmar et al., 2017
Plectin	Q15149		peptide-Arg1233+Gly-peptide	N	MS	Leu	Val	Ile	Arg	Gly	Thr	Gln	Gly	Vidmar et al., 2017
Plectin	Q15149		peptide-Arg2217+Gly-peptide	N	MS	Asp	Gln	Leu	Arg	Gly	Glu	Ala	Glu	Vidmar et al., 2017
Plectin	Q15149		peptide-Arg2431+Gln-peptide	N	MS	Ala	Arg	Leu	Arg	Gln	Leu	Ala	Glu	Vidmar et al., 2017
Plectin	Q15149		peptide-Leu994+Val-peptide	N	MS	Val	Cys	Phe	Leu	Val	Pro	Pro	Pro	Vidmar et al., 2017
Plectin	Q15149		peptide-Leu3664+Glu-peptide	N	MS	Arg	Gln	Leu	Leu	Glu	Arg	Cys	Val	Vidmar et al., 2017
Plectin	Q15149		peptide-Leu3233+Ser-peptide	N	MS	Glu	Lys	Leu	Leu	Ser	Ala	Glu	Lys	Vidmar et al., 2017
Plectin	Q15149		peptide-Ala3294+Cys-peptide	N	MS	Leu	Asp	Val	Ala	Cys	Ala	Arg	Gly	Vidmar et al., 2017
Plectin	Q15149		peptide-Gln2658+Asp-peptide	N	MS	Gln	Leu	Phe	Gln	Asp	Glu	Val	Ala	Vidmar et al., 2017
Plectin	Q15149		peptide-Gln2796+Glu-peptide	N	MS	Gln	Arg	Leu	Gln	Glu	Ala	Gly	Ile	Vidmar et al., 2017
Plectin	Q15149		peptide-Gln2207+Gln-peptide	N	MS	Gln	Thr	Leu	Gln	Gln	Glu	Gln	Ser	Vidmar et al., 2017
Plectin	Q15149		peptide-Arg2394+Asp-peptide	N	MS	Leu	Ile	Leu	Arg	Asp	Lys	Asp	Asn	Vidmar et al., 2017
Plectin	Q15149		peptide-Gln1443+Ser-peptide	N	MS	Pro	Lys	Val	Gln	Ser	Gly	Ser	Glu	Vidmar et al., 2017
Plectin	Q15149		peptide-His511+Val-peptide	N	MS	Gly	Lys	Leu	His	Val	Ala	Ile	Leu	Vidmar et al., 2017
Plectin	Q15149		peptide-Glu2514+Met-peptide	N	MS	Arg	Gln	Leu	Glu	Met	Ser	Ala	Glu	Vidmar et al., 2017
Plectin	Q15149		peptide-Gln3627+Arg-peptide	N	MS	Val	Ala	Tyr	Gln	Arg	Gly	Tyr	Phe	Vidmar et al., 2017
Plectin	Q15149		peptide-Arg1075+Asp-peptide	N	MS	Ala	Phe	Leu	Arg	Asp	Ser	Gln	Asp	Vidmar et al., 2017
Plectin	Q15149		peptide-Arg2162+Glu-peptide	N	MS	Arg	Arg	Leu	Arg	Glu	Arg	Ala	Glu	Vidmar et al., 2017
Plectin	Q15149		peptide-Ser3350+Glu-peptide	N	MS	Leu	Pro	Leu	Ser	Glu	Lys	Ala	Ala	Vidmar et al., 2017
Plectin	Q15149		peptide-Arg2968+Arg-peptide	N	MS	Val	Ala	Tyr	Arg	Arg	Gly	Tyr	Phe	Vidmar et al., 2017
Plectin	Q15149		peptide-Arg1856+Ala-peptide	N	MS	Ile	Arg	Leu	Arg	Ala	Glu	Thr	Glu	Vidmar et al., 2017
Plectin	Q15149		peptide-Glu3665+Arg-peptide	N	MS	Gln	Leu	Leu	Glu	Arg	Cys	Val	Glu	Vidmar et al., 2017
Plectin	Q15149		peptide-Arg2668+Glu-peptide	N	MS	Gln	Gln	Leu	Arg	Glu	Glu	Gln	Gln	Vidmar et al., 2017
Plectin	Q15149		peptide-Arg1273+Ala-peptide	N	MS	Lys	Lys	Leu	Arg	Ala	Gln	Ala	Glu	Vidmar et al., 2017
Plectin	Q15149		peptide-Arg2586+Glu-peptide	N	MS	Glu	Arg	Leu	Arg	Glu	Ala	Ile	Ala	Vidmar et al., 2017
Podocalyxin	O00592		peptide-Gly535+Asp-peptide	N	MS	Gly	Glu	Leu	Gly	Asp	Ser	Trp	Ile	Vidmar et al., 2017
Poly [ADP-ribose] polymerase 1	P09874	168-182	Glu-Glu-Leu-Gly171+Phe-Peptide	N	MS	Glu	Glu	Leu	Gly	Phe	Arg	Pro	Glu	Biniossek et al., 2011
Poly [ADP-ribose] polymerase 1	P09874	356-394	Peptide-Asn381+Ser-Peptide	N	MS	Ala	Ala	Val	Asn	Ser	Ser	Ala	Ser	Biniossek et al., 2011
Poly(ADP-ribose) glycohydrolase ARH3	Q9NX46	176-213	Peptide-Gln203+Gly-Peptide	N	MS	Leu	Ala	Leu	Gln	Gly	Glu	Ser	Ser	Biniossek et al., 2011
Poly(rC)-binding protein 1	Q15365	244-268	Peptide-His252+Gly-Peptide	N	MS	Ala	Met	Met	His	Gly	Gly	Thr	Gly	Biniossek et al., 2011
Poly(rC)-binding protein 1	Q15365		peptide-Ser50+Glu-peptide	N	MS	Ile	Asn	Ile	Ser	Glu	Gly	Asn	Cys	Vidmar et al., 2017
Poly(rC)-binding protein 1	Q15365		peptide-Gln132+Val-peptide	N	MS	Ala	Gln	Val	Gln	Val	Ala	Gly	Asp	Vidmar et al., 2017
Poly(rC)-binding protein 1	Q15365		peptide-Trp271+Ala-peptide	N	MS	Lys	Gly	Tyr	Trp	Ala	Ser	Leu	Asp	Vidmar et al., 2017
Poly(rC)-binding protein 1	Q15365		peptide-Gly299+Ala-peptide	N	MS	Gly	Arg	Gln	Gly	Ala	Asn	Ile	Asn	Vidmar et al., 2017
Poly(rC)-binding protein 1	Q15365		peptide-Thr62+Gly-peptide	N	MS	Ile	Thr	Leu	Thr	Gly	Pro	Thr	Asn	Vidmar et al., 2017
Poly(rC)-binding protein 1	Q15365		peptide-Arg40+Glu-peptide	N	MS	Lys	Arg	Ile	Arg	Glu	Glu	Ser	Gly	Vidmar et al., 2017
Poly(rC)-binding protein 1	Q15365		peptide-Lys121+Glu-peptide	N	MS	Cys	Lys	Ile	Lys	Glu	Ile	Arg	Glu	Vidmar et al., 2017
Poly(rC)-binding protein 1	Q15365		peptide-Ser202+Asp-peptide	N	MS	Asp	Arg	Cys	Ser	Asp	Ala	Ala	Gly	Vidmar et al., 2017
Poly(rC)-binding protein 1	Q15365		peptide-Thr60+Leu-peptide	N	MS	Arg	Ile	Ile	Thr	Leu	Thr	Gly	Pro	Vidmar et al., 2017
Poly(rC)-binding protein 2	Q15366	58-70	IIe-IIe-Thr-Leu61+Ala-Peptide	N	MS	Ile	Ile	Thr	Leu	Ala	Gly	Pro	Thr	Biniossek et al., 2011
Poly(rC)-binding protein 2	Q15366		peptide-Thr179+Ile-peptide	N	MS	Lys	Gly	Val	Thr	Ile	Pro	Tyr	Arg	Vidmar et al., 2017
Poly(rC)-binding protein 2	Q15366		peptide-Asp282+Ala-peptide	N	MS	Trp	Gly	Leu	Asp	Ala	Ser	Ala	Gln	Vidmar et al., 2017
Poly(rC)-binding protein 2	Q15366		peptide-Thr60+Leu-peptide	N	MS	Arg	Ile	Ile	Thr	Leu	Ala	Gly	Pro	Vidmar et al., 2017
Poly(U)-binding-splicing factor PUF60	Q9UHX1	228-243	IIe-Tyr-Val-Ala231+Ser-Peptide	N	MS	Ile	Tyr	Val	Ala	Ser	Val	His	Gln	Biniossek et al., 2011
Polyadenylate-binding protein 2	Q86U42		peptide-Leu61+Leu-peptide	N	MS	Glu	Glu	Leu	Leu	Leu	Glu	Pro	Glu	Vidmar et al., 2017
Polyglutamine-binding protein 1	O60828	55-87	Peptide-Leu76+Ser-Peptide	N	MS	Val	Ser	Trp	Leu	Ser	Pro	His	Asp	Biniossek et al., 2011
Polypyrimidine tract-binding protein 1	P26599	1-13	Met-Asp2+Gly-Peptide	N	MS	-	-	Met	Asp	Gly	Ile	Val	Pro	Biniossek et al., 2011
Polypyrimidine tract-binding protein 1	P26599		peptide-Gly79+Leu-peptide	N	MS	Ile	Ser	Leu	Gly	Leu	Pro	Phe	Gly	Vidmar et al., 2017
Polypyrimidine tract-binding protein 1	P26599		peptide-Arg64+Lys-peptide	N	MS	Ile	His	Ile	Arg	Lys	Leu	Pro	Ile	Vidmar et al., 2017
Polypyrimidine tract-binding protein 1	P26599		peptide-Gln415+Leu-peptide	N	MS	Gln	Asn	Val	Gln	Leu	Pro	Arg	Glu	Vidmar et al., 2017
Polypyrimidine tract-binding protein 1	P26599		peptide-Ala312+Ile-peptide	N	MS	Ala	Pro	Leu	Ala	Ile	Pro	Ser	Ala	Vidmar et al., 2017
Polypyrimidine tract-binding protein 1	P26599		peptide-Leu80+Pro-peptide	N	MS	Ser	Leu	Gly	Leu	Pro	Phe	Gly	Lys	Vidmar et al., 2017
Polypyrimidine tract-binding protein 1	P26599		peptide-Thr427+Lys-peptide	N	MS	Gln	Gly	Leu	Thr	Lys	Asp	Tyr	Gly	Vidmar et al., 2017
Polypyrimidine tract-binding protein 1	P26599		peptide-Leu340+Val-peptide	N	MS	Ser	Val	Leu	Leu	Val	Ser	Asn	Leu	Vidmar et al., 2017
Pre-mRNA-processing factor 19	Q9UMS4	383-396	Thr-Asn-Val-Ala386+Asn-Peptide	N	MS	Thr	Asn	Val	Ala	Asn	Phe	Pro	Gly	Biniossek et al., 2011
Pre-mRNA-processing factor 6	O94906	884-898	Phe-Glu-Leu-Gln887+His-Peptide	N	MS	Phe	Glu	Leu	Gln	His	Gly	Thr	Glu	Biniossek et al., 2011
Pre-mRNA-processing-splicing factor 8	Q6P2Q9	862-880	Peptide-Glu868+Gln-Peptide	N	MS	Gly	Leu	Ile	Glu	Gln	Ala	Tyr	Asp	Biniossek et al., 2011
Pre-mRNA-splicing factor 38B	Q5VTL8	2-42	Peptide-Gln27+Gln-Peptide	N	MS	Gln	Gln	Gln	Gln	Gln	Cys	Gly	Gly	Biniossek et al., 2011
Pre-mRNA-splicing factor 38B	Q5VTL8	2-42	Peptide-Gln26+Gln-Peptide	N	MS	Ala	Gln	Gln	Gln	Gln	Gln	Cys	Gly	Biniossek et al., 2011
Pre-mRNA-splicing factor 38B	Q5VTL8	2-42	Peptide-Gln25+Gln-Peptide	N	MS	Ala	Ala	Gln	Gln	Gln	Gln	Gln	Cys	Biniossek et al., 2011
Prefoldin subunit 3	P61758		peptide-Ser149+Thr-peptide	N	MS	Lys	Asn	Leu	Ser	Thr	Ala	Thr	Lys	Vidmar et al., 2017
Prelamin-A/C	P02545		peptide-Glu264+Lys-peptide	N	MS	Lys	Glu	Leu	Glu	Lys	Thr	Tyr	Ser	Vidmar et al., 2017
Prelamin-A/C	P02545		peptide-Lys201+Glu-peptide	N	MS	Gln	Thr	Met	Lys	Glu	Glu	Leu	Asp	Vidmar et al., 2017
PRKC apoptosis WT1 regulator protein	Q96IZ0		peptide-Lys304+Glu-peptide	N	MS	Gly	Lys	Leu	Lys	Glu	Glu	Ile	Asp	Vidmar et al., 2017
probable ATP-dependent RNA helicase DDX17 isoform 2	Q92841-1	490-508	Peptide-Met500+Tyr-Peptide	N	MS	Pro	Asn	Leu	Met	Tyr	Gln	Asp	Glu	Biniossek et al., 2011
Probable ATP-dependent RNA helicase DDX20	Q9UHI6	548-565	Peptide-Gln551+Thr-Peptide	N	MS	Asn	Ser	Val	Gln	Thr	Pro	Val	Glu	Biniossek et al., 2011
Probable ATP-dependent RNA helicase DDX6	P26196		peptide-Arg22+Gly-peptide	N	MS	Gly	Gln	Leu	Arg	Gly	Pro	Val	Lys	Vidmar et al., 2017
Probable E3 ubiquitin-protein ligase HERC4	Q5GLZ8	244-259	Peptide-Cys249+Gly-Peptide	N	MS	Tyr	Ile	Cys	Cys	Gly	Glu	Asp	His	Biniossek et al., 2011
Probable rRNA-processing protein EBP2	Q99848	70-90	Peptide-Gly81+Gly-Peptide	N	MS	Pro	Glu	Ile	Gly	Gly	Ser	Glu	Ala	Biniossek et al., 2011
Probable ubiquitin carboxyl-terminal hydrolase FAF-X	Q93008	1835-1862	Peptide-Gln1848+Gln-Peptide	N	MS	Gln	Leu	Ile	Gln	Gln	Ser	Glu	Gln	Biniossek et al., 2011
Profilin-1	P07737	2-26	Peptide-Met12+Ala-Peptide	N	MS	Asp	Asn	Leu	Met	Ala	Asp	Gly	Thr	Biniossek et al., 2011
Profilin-1	P07737	92-105	Ser-Thr-Gly94+Gly-Peptide	N	MS	-	Ser	Thr	Gly	Gly	Ala	Pro	Thr	Biniossek et al., 2011
Profilin-1	P07737	76-89	Asp-Ser-Leu-Leu79+Gln-Peptide	N	MS	Asp	Ser	Leu	Leu	Gln	Asp	Gly	Glu	Biniossek et al., 2011
Programmed cell death protein 4	Q53EL6	312-329	Asp-Ser-Val-Trp315+Gly-Peptide	N	MS	Asp	Ser	Val	Trp	Gly	Ser	Gly	Gly	Biniossek et al., 2011
Programmed cell death protein 4	Q53EL6	337-352	Glu-Tyr-Leu-Leu340+Ser-Peptide	N	MS	Glu	Tyr	Leu	Leu	Ser	Gly	Asp	Ile	Biniossek et al., 2011
Programmed cell death protein 4	Q53EL6	312-329	Peptide-Gly316+Ser-Peptide	N	MS	Ser	Val	Trp	Gly	Ser	Gly	Gly	Gly	Biniossek et al., 2011
Programmed cell death protein 6	O75340		peptide-Ser53+Asn-peptide	N	MS	Gln	Ala	Leu	Ser	Asn	Gly	Thr	Trp	Vidmar et al., 2017
Proliferating cell nuclear antigen	P12004		peptide-Ser183+Gln-peptide	N	MS	Ile	Lys	Leu	Ser	Gln	Thr	Ser	Asn	Vidmar et al., 2017
Proliferating cell nuclear antigen	P12004		peptide-Tyr250+Leu-peptide	N	MS	Leu	Lys	Tyr	Tyr	Leu	Ala	Pro	Lys	Vidmar et al., 2017
Proliferating cell nuclear antigen	P12004		peptide-Gly127+Ile-peptide	N	MS	Glu	Gln	Leu	Gly	Ile	Pro	Glu	Gln	Vidmar et al., 2017
Proliferating cell nuclear antigen	P12004		peptide-Arg53+Ser-peptide	N	MS	Leu	Thr	Leu	Arg	Ser	Glu	Gly	Phe	Vidmar et al., 2017
Proliferating cell nuclear antigen	P12004		peptide-Lys80+Cys-peptide	N	MS	Lys	Ile	Leu	Lys	Cys	Ala	Gly	Asn	Vidmar et al., 2017
Proliferation-associated protein 2G4	Q9UQ80	108-138	Peptide-Ala130+Gln-Peptide	N	MS	Val	Asp	Val	Ala	Gln	Gly	Thr	Gln	Biniossek et al., 2011
Proliferation-associated protein 2G4	Q9UQ80		peptide-Arg155+Leu-peptide	N	MS	Ala	Ala	Leu	Arg	Leu	Val	Lys	Pro	Vidmar et al., 2017
Proliferation-associated protein 2G4	Q9UQ80		peptide-Thr334+Ser-peptide	N	MS	Met	Arg	Ile	Thr	Ser	Gly	Pro	Phe	Vidmar et al., 2017
Proliferation-associated protein 2G4	Q9UQ80		peptide-Lys344+Ser-peptide	N	MS	Asp	Leu	Tyr	Lys	Ser	Glu	Met	Glu	Vidmar et al., 2017
Proline-rich protein 13	Q9NZ81	1-108	Peptide-Val99+Gly-Peptide	N	MS	Pro	Gly	Met	Val	Gly	Pro	Ala	Val	Biniossek et al., 2011
Prolyl endopeptidase	P48147	261-278	Peptide-Gln267+Gln-Peptide	N	MS	Cys	Asp	Leu	Gln	Gln	Glu	Ser	Ser	Biniossek et al., 2011
Prostaglandin E synthase 3	Q15185		peptide-Cys76+Leu-peptide	N	MS	Ile	Leu	Cys	Cys	Leu	Arg	Lys	Gly	Vidmar et al., 2017
Prostaglandin E synthase 3	Q15185		peptide-Arg78+Lys-peptide	N	MS	Cys	Cys	Leu	Arg	Lys	Gly	Glu	Ser	Vidmar et al., 2017
Proteasomal ubiquitin receptor ADRM1	Q16186	310-379	Peptide-Glu367+Ala-Peptide	N	MS	Glu	Ala	Val	Glu	Ala	Ala	Asn	Lys	Biniossek et al., 2011
Proteasome activator complex subunit 1	Q06323		peptide-Gly30+Ser-peptide	N	MS	Asn	Leu	Leu	Gly	Ser	Tyr	Phe	Pro	Vidmar et al., 2017
Proteasome activator complex subunit 1	Q06323		peptide-Asp62+Ile-peptide	N	MS	Ala	Pro	Leu	Asp	Ile	Pro	Val	Pro	Vidmar et al., 2017
Proteasome activator complex subunit 1	Q06323		peptide-Asn50+Glu-peptide	N	MS	Pro	Ala	Leu	Asn	Glu	Ala	Asn	Leu	Vidmar et al., 2017
Proteasome activator complex subunit 2	Q9UL46		peptide-Gln48+Glu-peptide	N	MS	Gln	Leu	Leu	Gln	Glu	Asp	Ser	Leu	Vidmar et al., 2017
Proteasome subunit alpha type-1	P25786	175-189	Peptide-Met180+Glu-Peptide	N	MS	Ser	Glu	Phe	Met	Glu	Cys	Asn	Leu	Biniossek et al., 2011
Proteasome subunit alpha type-1	P25786		peptide-Gln146+Thr-peptide	N	MS	His	Ile	Phe	Gln	Thr	Cys	Pro	Ser	Vidmar et al., 2017
Proteasome subunit alpha type-1	P25786		peptide-Leu133+Ile-peptide	N	MS	Val	Gly	Leu	Leu	Ile	Ala	Gly	Tyr	Vidmar et al., 2017
Proteasome subunit alpha type-1	P25786		peptide-Ile134+Ala-peptide	N	MS	Gly	Leu	Leu	Ile	Ala	Gly	Tyr	Asp	Vidmar et al., 2017
Proteasome subunit alpha type-1	P25786		peptide-Phe99+Asp-peptide	N	MS	Arg	Phe	Val	Phe	Asp	Arg	Pro	Leu	Vidmar et al., 2017
Proteasome subunit alpha type-1	P25786		peptide-Gly113+Ser-peptide	N	MS	Ser	Leu	Ile	Gly	Ser	Lys	Thr	Gln	Vidmar et al., 2017
Proteasome subunit alpha type-1	P25786		peptide-Gly216+Lys-peptide	N	MS	Gly	Ile	Val	Gly	Lys	Asp	Leu	Glu	Vidmar et al., 2017
Proteasome subunit alpha type-2	P25787		peptide-Phe147+Gln-peptide	N	MS	Pro	Tyr	Leu	Phe	Gln	Ser	Asp	Pro	Vidmar et al., 2017
Proteasome subunit alpha type-4	P25789		peptide-Thr10+Ile-peptide	N	MS	Ser	Arg	Thr	Thr	Ile	Phe	Ser	Pro	Vidmar et al., 2017
Proteasome subunit alpha type-6	P60900	60-71	Leu-Leu-Asp62+Ser-Peptide	N	MS	-	Leu	Leu	Asp	Ser	Ser	Thr	Val	Biniossek et al., 2011
Proteasome subunit alpha type-7	O14818	6-28	Peptide-Glu20+Tyr-Peptide	N	MS	Phe	Gln	Val	Glu	Tyr	Ala	Gln	Glu	Biniossek et al., 2011
Proteasome subunit alpha type-7	O14818		peptide-Thr77+Ala-peptide	N	MS	Ala	Gly	Leu	Thr	Ala	Asp	Ala	Arg	Vidmar et al., 2017
Proteasome subunit alpha type-7	O14818		peptide-Ile133+Val-peptide	N	MS	Ser	Ala	Leu	Ile	Val	Gly	Phe	Asp	Vidmar et al., 2017
Proteasome subunit alpha type-7	O14818		peptide-Gly135+Phe-peptide	N	MS	Leu	Ile	Val	Gly	Phe	Asp	Phe	Asp	Vidmar et al., 2017
Proteasome subunit beta type-1	P20618		peptide-Ser209+Ala-peptide	N	MS	Val	Phe	Ile	Ser	Ala	Ala	Glu	Arg	Vidmar et al., 2017
Proteasome subunit beta type-4	P28070		peptide-Thr238+Glu-peptide	N	MS	Ala	Thr	Val	Thr	Glu	Lys	Gly	Val	Vidmar et al., 2017
Proteasome subunit beta type-4	P28070		peptide-Gly97+Ala-peptide	N	MS	Thr	Met	Leu	Gly	Ala	Ser	Gly	Asp	Vidmar et al., 2017
Proteasome subunit beta type-4	P28070		peptide-Ser249+Thr-peptide	N	MS	Gly	Pro	Leu	Ser	Thr	Glu	Thr	Asn	Vidmar et al., 2017
Proteasome subunit beta type-5	P28074	93-116	Peptide-Ala105+Gly-Peptide	N	MS	Gly	Thr	Met	Ala	Gly	Gly	Ala	Ala	Biniossek et al., 2011
Proteasome subunit beta type-6	P28072		peptide-Thr65+Asp-peptide	N	MS	Asn	Arg	Val	Thr	Asp	Lys	Leu	Thr	Vidmar et al., 2017
Proteasome subunit beta type-6	P28072		peptide-Gln96+Leu-peptide	N	MS	Val	Thr	Tyr	Gln	Leu	Gly	Phe	His	Vidmar et al., 2017
Proteasome subunit beta type-7	Q99436		peptide-Glu182+Asp-peptide	N	MS	Ala	Val	Phe	Glu	Asp	Lys	Phe	Arg	Vidmar et al., 2017
Proteasome-associated protein ECM29 homolog	Q5VYK3	861-879	Peptide-Gly871+Asp-Peptide	N	MS	Phe	Pro	Val	Gly	Asp	Gly	Asp	Phe	Biniossek et al., 2011
Protein ABHD14B	Q96IU4		peptide-Thr139+Asp-peptide	N	MS	Pro	Ile	Cys	Thr	Asp	Lys	Ile	Asn	Vidmar et al., 2017
Protein AHNAK2	Q8IVF2		peptide-Ser1033+Leu-peptide	N	MS	Ala	Asp	Leu	Ser	Leu	Pro	Ser	Met	Vidmar et al., 2017
Protein arginine N-methyltransferase 5	O14744	429-458	Peptide-Leu450+Asp-Peptide	N	MS	Pro	Glu	Cys	Leu	Asp	Gly	Ala	Gln	Biniossek et al., 2011
Protein CDV3 homolog	Q9UKY7		peptide-Thr177+Thr-peptide	N	MS	Ala	Arg	Leu	Thr	Thr	Thr	Arg	Lys	Vidmar et al., 2017
Protein disulfide-isomerase	P07237		peptide-Thr117+Ala-peptide	N	MS	Lys	Glu	Tyr	Thr	Ala	Gly	Arg	Glu	Vidmar et al., 2017
Protein disulfide-isomerase	P07237		peptide-Ser357+Gln-peptide	N	MS	His	Leu	Met	Ser	Gln	Glu	Leu	Pro	Vidmar et al., 2017
Protein disulfide-isomerase	P07237		peptide-Lys401+Gln-peptide	N	MS	Gly	His	Cys	Lys	Gln	Leu	Ala	Pro	Vidmar et al., 2017
Protein disulfide-isomerase	P07237		peptide-Thr325+Lys-peptide	N	MS	Glu	Glu	Met	Thr	Lys	Tyr	Lys	Pro	Vidmar et al., 2017
Protein disulfide-isomerase	P07237		peptide-Lys444+Phe-peptide	N	MS	Pro	Thr	Leu	Lys	Phe	Phe	Pro	Ala	Vidmar et al., 2017
Protein disulfide-isomerase	P07237		peptide-Arg78+Leu-peptide	N	MS	Ser	Glu	Ile	Arg	Leu	Ala	Lys	Val	Vidmar et al., 2017
Protein disulfide-isomerase	P07237		peptide-Gly374+Lys-peptide	N	MS	Val	Leu	Val	Gly	Lys	Asn	Phe	Glu	Vidmar et al., 2017
Protein disulfide-isomerase	P07237		peptide-Ala17+Asp-peptide	N	MS	Leu	Val	Arg	Ala	Asp	Ala	Pro	Glu	Vidmar et al., 2017
Protein disulfide-isomerase	P07237		peptide-Gly411+Glu-peptide	N	MS	Asp	Lys	Leu	Gly	Glu	Thr	Tyr	Lys	Vidmar et al., 2017
Protein disulfide-isomerase	P07237		peptide-Ser266+Asp-peptide	N	MS	Lys	Ser	Val	Ser	Asp	Tyr	Asp	Gly	Vidmar et al., 2017
Protein disulfide-isomerase A3	P30101	153-173	Peptide-Ser165+Glu-Peptide	N	MS	Asp	Ser	Phe	Ser	Glu	Ala	His	Ser	Biniossek et al., 2011
Protein disulfide-isomerase A3	P30101	380-395	Peptide-Ala383+Glu-Peptide	N	MS	Val	Val	Val	Ala	Glu	Asn	Phe	Asp	Biniossek et al., 2011
Protein disulfide-isomerase A3	P30101	306-329	Peptide-Glu317+Ser-Peptide	N	MS	Phe	Gly	Leu	Glu	Ser	Thr	Ala	Gly	Biniossek et al., 2011
Protein disulfide-isomerase A3	P30101		peptide-Thr212+Asn-peptide	N	MS	Ser	His	Leu	Thr	Asn	Lys	Phe	Glu	Vidmar et al., 2017
Protein disulfide-isomerase A3	P30101		peptide-Arg107+Asp-peptide	N	MS	Lys	Ile	Phe	Arg	Asp	Gly	Glu	Glu	Vidmar et al., 2017
Protein disulfide-isomerase A3	P30101		peptide-Lys61+Arg-peptide	N	MS	Gly	His	Cys	Lys	Arg	Leu	Ala	Pro	Vidmar et al., 2017
Protein disulfide-isomerase A3	P30101		peptide-Ala121+Asp-peptide	N	MS	Pro	Arg	Thr	Ala	Asp	Gly	Ile	Val	Vidmar et al., 2017
Protein disulfide-isomerase A3	P30101		peptide-Gln481+Arg-peptide	N	MS	Ser	Tyr	Leu	Gln	Arg	Glu	Ala	Thr	Vidmar et al., 2017
Protein disulfide-isomerase A3	P30101		peptide-Ser424+Lys-peptide	N	MS	Glu	Lys	Leu	Ser	Lys	Asp	Pro	Asn	Vidmar et al., 2017
Protein disulfide-isomerase A3	P30101		peptide-Glu29+Leu-peptide	N	MS	Asp	Val	Leu	Glu	Leu	Thr	Asp	Asp	Vidmar et al., 2017
Protein disulfide-isomerase A3	P30101		peptide-Tyr454+Phe-peptide	N	MS	Pro	Thr	Ile	Tyr	Phe	Ser	Pro	Ala	Vidmar et al., 2017
Protein disulfide-isomerase A3	P30101		peptide-Thr228+Ser-peptide	N	MS	Gln	Lys	Met	Thr	Ser	Gly	Lys	Ile	Vidmar et al., 2017
Protein disulfide-isomerase A3	P30101		peptide-Gly158+Phe-peptide	N	MS	Ser	Ile	Val	Gly	Phe	Phe	Asp	Asp	Vidmar et al., 2017
Protein disulfide-isomerase A3	P30101		peptide-Arg140+Thr-peptide	N	MS	Val	Pro	Leu	Arg	Thr	Glu	Glu	Glu	Vidmar et al., 2017
Protein disulfide-isomerase A3	P30101		peptide-Lys129+Lys-peptide	N	MS	Ser	His	Leu	Lys	Lys	Gln	Ala	Gly	Vidmar et al., 2017
Protein disulfide-isomerase A3	P30101		peptide-Asp435+Ala-peptide	N	MS	Ala	Lys	Met	Asp	Ala	Thr	Ala	Asn	Vidmar et al., 2017
Protein disulfide-isomerase A6	Q15084		peptide-Glu408+Arg-peptide	N	MS	Thr	Ile	Val	Glu	Arg	Glu	Pro	Trp	Vidmar et al., 2017
Protein disulfide-isomerase A6	Q15084		peptide-Glu164+Leu-peptide	N	MS	Asp	Val	Ile	Glu	Leu	Thr	Asp	Asp	Vidmar et al., 2017
Protein disulfide-isomerase A6	Q15084		peptide-Ser377+Glu-peptide	N	MS	Gly	Ser	Phe	Ser	Glu	Gln	Gly	Ile	Vidmar et al., 2017
Protein disulfide-isomerase A6	Q15084		peptide-Glu29+Leu-peptide	N	MS	Asp	Val	Ile	Glu	Leu	Thr	Pro	Ser	Vidmar et al., 2017
Protein disulfide-isomerase A6	Q15084		peptide-Gly120+Glu-peptide	N	MS	Gly	Arg	Thr	Gly	Glu	Ala	Ile	Val	Vidmar et al., 2017
Protein disulfide-isomerase A6	Q15084		peptide-Lys373+Gly-peptide	N	MS	Ala	Leu	Leu	Lys	Gly	Ser	Phe	Ser	Vidmar et al., 2017
Protein DJ-1	Q99497		peptide-Gln45+Cys-peptide	N	MS	Asp	Pro	Val	Gln	Cys	Ser	Arg	Asp	Vidmar et al., 2017
Protein DJ-1	Q99497		peptide-Thr154+Ser-peptide	N	MS	Leu	Ile	Leu	Thr	Ser	Arg	Gly	Pro	Vidmar et al., 2017
Protein DJ-1	Q99497		peptide-Thr34+Val-peptide	N	MS	Ile	Lys	Val	Thr	Val	Ala	Gly	Leu	Vidmar et al., 2017
Protein DJ-1	Q99497		peptide-Glu18+Thr-peptide	N	MS	Glu	Glu	Met	Glu	Thr	Val	Ile	Pro	Vidmar et al., 2017
Protein FAM3C	Q92520		peptide-Gly126+Gly-peptide	N	MS	Asp	Met	Trp	Gly	Gly	Asp	Val	Ala	Vidmar et al., 2017
Protein FAM3C	Q92520		peptide-Met147+Gly-peptide	N	MS	Ile	Val	Leu	Met	Gly	Thr	Tyr	Asp	Vidmar et al., 2017
Protein FAM53C	Q9NYF3	244-257	Peptide-Ala248+Arg-Peptide	N	MS	Leu	Pro	Ser	Ala	Arg	Ser	Ser	Pro	Biniossek et al., 2011
Protein LSM14 homolog A	Q8ND56	216-229	Peptide-Ser219+Thr-Peptide	N	MS	Ser	Pro	Val	Ser	Thr	Arg	Pro	Leu	Biniossek et al., 2011
Protein NDRG1	Q92597	213-225	Peptide-Asn217+Asp-Peptide	N	MS	His	Ile	Val	Asn	Asp	Met	Asn	Pro	Biniossek et al., 2011
Protein NDRG1	Q92597	199-212	Glu-Glu-Met-Gln202+Ser-Peptide	N	MS	Glu	Glu	Met	Gln	Ser	Asn	Val	Glu	Biniossek et al., 2011
Protein PBDC1	Q9BVG4		peptide-Lys107+Phe-peptide	N	MS	Phe	Cys	Leu	Lys	Phe	Asn	Gly	Ile	Vidmar et al., 2017
Protein phosphatase 1 regulatory subunit 12B	O60237		peptide-Lys967+Asp-peptide	N	MS	Gln	Arg	Leu	Lys	Asp	Glu	Asn	Gly	Vidmar et al., 2017
Protein phosphatase 1 regulatory subunit 14B	Q96C90		peptide-Ala13+Ala-peptide	N	MS	Ala	Ala	Leu	Ala	Ala	Pro	Ala	Pro	Vidmar et al., 2017
Protein phosphatase 1F	P49593	415-435	Peptide-Glu421+Gly-Peptide	N	MS	Glu	Leu	Leu	Glu	Gly	Gly	Asn	Gln	Biniossek et al., 2011
Protein phosphatase 1G	O15355	113-130	Glu-Leu-Ala115+Gln-Peptide	N	MS	-	Glu	Leu	Ala	Gln	Ile	Ala	Gly	Biniossek et al., 2011
Protein phosphatase 1G	O15355	221-250	Peptide-Ser242+Ser-Peptide	N	MS	Pro	Ser	Cys	Ser	Ser	Ala	Ser	Asp	Biniossek et al., 2011
Protein PRRC1	Q96M27		peptide-Lys227+Ser-peptide	N	MS	Pro	Met	Val	Lys	Ser	Val	Leu	Asp	Vidmar et al., 2017
Protein PRRC1	Q96M27		peptide-Lys307+Gly-peptide	N	MS	Ala	Gly	Leu	Lys	Gly	Ala	Gln	Glu	Vidmar et al., 2017
Protein PRRC2C	Q9Y520		peptide-Lys2129+Asp-peptide	N	MS	Arg	Lys	Val	Lys	Asp	Ala	Gln	Gln	Vidmar et al., 2017
Protein quaking	Q96PU8		peptide-Arg242+Thr-peptide	N	MS	Ala	Ala	Leu	Arg	Thr	Pro	Thr	Pro	Vidmar et al., 2017
Protein SCAI	Q8N9R8	256-286	Peptide-Ala276+Asp-Peptide	N	MS	Leu	Ser	Leu	Ala	Asp	Ala	Leu	Ile	Biniossek et al., 2011
Protein SET	Q01105	40-57	Peptide-Glu46+His-Peptide	N	MS	Glu	Ala	Ile	Glu	His	Ile	Asp	Glu	Biniossek et al., 2011
Protein SET	Q01105		peptide-Thr97+Thr-peptide	N	MS	Phe	Trp	Val	Thr	Thr	Phe	Val	Asn	Vidmar et al., 2017
Protein SET	Q01105		peptide-Thr204+Trp-peptide	N	MS	Ser	Phe	Phe	Thr	Trp	Phe	Thr	Asp	Vidmar et al., 2017
Protein SET	Q01105		peptide-Asn59+Glu-peptide	N	MS	Asp	Arg	Leu	Asn	Glu	Gln	Ala	Ser	Vidmar et al., 2017
Protein SET	Q01105		peptide-Gly218+Glu-peptide	N	MS	Asp	Glu	Leu	Gly	Glu	Val	Ile	Lys	Vidmar et al., 2017
Protein SMG5	Q9UPR3		peptide-Arg778+Leu-peptide	N	MS	Phe	Ile	Ala	Arg	Leu	Gln	Gly	Ser	Vidmar et al., 2017
Protein SON	P18583		peptide-Ser1722+Ala-peptide	N	MS	Ser	Gly	Phe	Ser	Ala	Asn	Ile	Glu	Vidmar et al., 2017
Protein TFG	Q92734	180-203	Peptide-Ser193+Gly-Peptide	N	MS	Asp	Gln	Val	Ser	Gly	Pro	Pro	Ser	Biniossek et al., 2011
Protein TFG	Q92734	86-106	Peptide-Glu98+Ser-Peptide	N	MS	Arg	Pro	Leu	Glu	Ser	Ser	Gln	Val	Biniossek et al., 2011
Protein TFG	Q92734		peptide-Lys172+Asn-peptide	N	MS	Asp	Pro	Leu	Lys	Asn	Gln	Asp	Glu	Vidmar et al., 2017
Protein TFG	Q92734		peptide-Met371+Thr-peptide	N	MS	Gly	Ser	Thr	Met	Thr	Pro	Pro	Pro	Vidmar et al., 2017
Protein transport protein Sec23A	Q15436	448-476	Peptide-Asn465+Gln-Peptide	N	MS	Glu	Val	Val	Asn	Gln	His	Asn	Ala	Biniossek et al., 2011
Protein transport protein Sec23A	Q15436		peptide-Arg18+Phe-peptide	N	MS	Asp	Gly	Val	Arg	Phe	Ser	Trp	Asn	Vidmar et al., 2017
Protein-arginine deiminase type-1	Q9ULC6	13-40	Peptide-His30+Ser-Peptide	N	MS	Val	Asp	Ile	His	Ser	Asp	Val	Pro	Biniossek et al., 2011
Protein-L-isoaspartate(D-aspartate) O-methyltransferase	P22061	145-159	Peptide-Ala148+Glu-Peptide	N	MS	Met	Gly	Tyr	Ala	Glu	Glu	Ala	Pro	Biniossek et al., 2011
proteoglycan 4	Q92954	25-1404	peptide-His1112+Val-peptide	P	MS	Leu	Arg	Pro	His	Val	Phe	Met	Pro	Regmi et al., 2017
proteoglycan 4	Q92954	25-1404	peptide-Phe1114+Met-peptide	P	MS	Pro	His	Val	Phe	Met	Pro	Glu	Val	Regmi et al., 2017
proteoglycan 4	Q92954	25-1404	peptide-Trp1171+Met-peptide	P	MS	His	Tyr	Phe	Trp	Met	Leu	Ser	Pro	Regmi et al., 2017
proteoglycan 4	Q92954	25-1404	peptide-Gly1265+Gly-peptide	P	MS	Phe	Lys	Arg	Gly	Gly	Ser	Ile	Gln	Regmi et al., 2017
proteoglycan 4	Q92954	25-1404	peptide-Pro1286+Ala-peptide	P	MS	Gly	Arg	Arg	Pro	Ala	Leu	Asn	Tyr	Regmi et al., 2017
proteoglycan 4	Q92954	25-1404	peptide-Phe1370+Ser-peptide	P	MS	Tyr	Tyr	Ala	Phe	Ser	Lys	Asp	Gln	Regmi et al., 2017
Pterin-4-alpha-carbinolamine dehydratase	P61457	73-88	Peptide-Leu77+Ser-Peptide	N	MS	His	Ile	Thr	Leu	Ser	Thr	His	Glu	Biniossek et al., 2011
Purine nucleoside phosphorylase	P00491	25-41	Peptide-Cys31+Gly-Peptide	N	MS	Ala	Ile	Ile	Cys	Gly	Ser	Gly	Leu	Biniossek et al., 2011
Purine nucleoside phosphorylase	P00491	212-229	Peptide-Ser220+Thr-Peptide	N	MS	Val	Gly	Met	Ser	Thr	Val	Pro	Glu	Biniossek et al., 2011
Putative adenosylhomocysteinase 3	Q96HN2	331-342	Gly-IIe-Val-Glu334+Glu-Peptide	N	MS	Gly	Ile	Val	Glu	Glu	Ser	Val	Thr	Biniossek et al., 2011
Putative ATP-dependent RNA helicase DHX30	Q7L2E3	188-220	Peptide-Thr211+Gln-Peptide	N	MS	Leu	Ser	Met	Thr	Gln	Gln	Asp	Ser	Biniossek et al., 2011
Putative ciliary rootlet coiled-coil protein 2	H7BZ55		peptide-Lys336+Thr-peptide	N	MS	Gln	Lys	Ala	Lys	Thr	Ile	Ala	Ala	Vidmar et al., 2017
Putative RNA-binding protein Luc7-like 2	Q9Y383		peptide-Gln91+Ser-peptide	N	MS	Asp	His	Leu	Gln	Ser	Phe	Ile	Ala	Vidmar et al., 2017
Putative trypsin-6	Q8NHM4	183-206	Peptide-Glu190+Gly-Peptide	N	MS	Gly	Phe	Leu	Glu	Gly	Gly	Lys	Asp	Biniossek et al., 2011
Pyridoxal kinase	O00764	7-16	Val-Leu-Ser9+IIe-Peptide	N	MS	-	Val	Leu	Ser	Ile	Gln	Ser	His	Biniossek et al., 2011
Pyridoxine-5'-phosphate oxidase	Q9NVS9	164-181	Peptide-Ser172+His-Peptide	N	MS	Ala	Val	Val	Ser	His	Gln	Ser	Ser	Biniossek et al., 2011
Pyrroline-5-carboxylate reductase 2	Q96C36	216-228	Met-Leu-Leu218+Asp-Peptide	N	MS	-	Met	Leu	Leu	Asp	Ser	Glu	Gln	Biniossek et al., 2011
Pyrroline-5-carboxylate reductase 2	Q96C36	216-228	Met-Leu-Leu-Asp219+Ser-Peptide	N	MS	Met	Leu	Leu	Asp	Ser	Glu	Gln	His	Biniossek et al., 2011
Pyrroline-5-carboxylate reductase 3	Q53H96	219-231	Peptide-His222+Glu-Peptide	N	MS	Met	Leu	Leu	His	Glu	Gly	Gln	His	Biniossek et al., 2011
Pyruvate kinase isozymes M1/M2	P14618	476-489	Asp-Pro-Val-Gln479+Glu-Peptide	N	MS	Asp	Pro	Val	Gln	Glu	Ala	Trp	Ala	Biniossek et al., 2011
Pyruvate kinase isozymes M1/M2	P14618	189-206	Peptide-Thr195+Glu-Peptide	N	MS	Phe	Leu	Val	Thr	Glu	Val	Glu	Asn	Biniossek et al., 2011
Pyruvate kinase isozymes M1/M2	P14618	74-89	Peptide-His78+Gly-Peptide	N	MS	Asn	Phe	Ser	His	Gly	Thr	His	Glu	Biniossek et al., 2011
Pyruvate kinase isozymes M1/M2	P14618	208-224	Gly-Val-Asn210+Leu-Peptide	N	MS	-	Gly	Val	Asn	Leu	Pro	Gly	Ala	Biniossek et al., 2011
Pyruvate kinase PKM	P14618		peptide-Met313+Ile-peptide	N	MS	Gln	Lys	Met	Met	Ile	Gly	Arg	Cys	Vidmar et al., 2017
Pyruvate kinase PKM	P14618		peptide-Gly171+Ser-peptide	N	MS	Val	Glu	Val	Gly	Ser	Lys	Ile	Tyr	Vidmar et al., 2017
Pyruvate kinase PKM	P14618		peptide-Ala442+Arg-peptide	N	MS	His	Gln	Val	Ala	Arg	Tyr	Arg	Pro	Vidmar et al., 2017
Pyruvate kinase PKM	P14618		peptide-Leu331+Glu-peptide	N	MS	Thr	Gln	Met	Leu	Glu	Ser	Met	Ile	Vidmar et al., 2017
Pyruvate kinase PKM	P14618		peptide-Lys266+Ile-peptide	N	MS	Lys	Asn	Ile	Lys	Ile	Ile	Ser	Lys	Vidmar et al., 2017
Pyruvate kinase PKM	P14618		peptide-Ala111+Leu-peptide	N	MS	Val	Ala	Val	Ala	Leu	Asp	Thr	Lys	Vidmar et al., 2017
Pyruvate kinase PKM	P14618		peptide-Gln184+Val-peptide	N	MS	Ile	Ser	Leu	Gln	Val	Lys	Gln	Lys	Vidmar et al., 2017
Pyruvate kinase PKM	P14618		peptide-Phe241+Ala-peptide	N	MS	Asp	Met	Val	Phe	Ala	Ser	Phe	Ile	Vidmar et al., 2017
Pyruvate kinase PKM	P14618		peptide-Met149+Glu-peptide	N	MS	Asn	Ala	Tyr	Met	Glu	Lys	Cys	Asp	Vidmar et al., 2017
Pyruvate kinase PKM	P14618		peptide-Ala382+Arg-peptide	N	MS	His	Leu	Ile	Ala	Arg	Glu	Ala	Glu	Vidmar et al., 2017
Pyruvate kinase PKM	P14618		peptide-Cys49+Thr-peptide	N	MS	Gly	Ile	Ile	Cys	Thr	Ile	Gly	Pro	Vidmar et al., 2017
Pyruvate kinase PKM	P14618		peptide-Thr41+Ala-peptide	N	MS	Pro	Pro	Ile	Thr	Ala	Arg	Asn	Thr	Vidmar et al., 2017
Pyruvate kinase PKM	P14618		peptide-Leu361+Ser-peptide	N	MS	Cys	Ile	Met	Leu	Ser	Gly	Glu	Thr	Vidmar et al., 2017
Pyruvate kinase PKM	P14618		peptide-Thr513+Gly-peptide	N	MS	Ile	Val	Leu	Thr	Gly	Trp	Arg	Pro	Vidmar et al., 2017
Pyruvate kinase PKM	P14618		peptide-Lys125+Gly-peptide	N	MS	Gly	Leu	Ile	Lys	Gly	Ser	Gly	Thr	Vidmar et al., 2017
Pyruvate kinase PKM	P14618		peptide-Gly259+Glu-peptide	N	MS	Lys	Val	Leu	Gly	Glu	Lys	Gly	Lys	Vidmar et al., 2017
Pyruvate kinase PKM	P14618		peptide-Thr50+Ile-peptide	N	MS	Ile	Ile	Cys	Thr	Ile	Gly	Pro	Ala	Vidmar et al., 2017
Pyruvate kinase PKM	P14618		peptide-Leu512+Thr-peptide	N	MS	Val	Ile	Val	Leu	Thr	Gly	Trp	Arg	Vidmar et al., 2017
Pyruvate kinase PKM	P14618		peptide-Lys66+Ser-peptide	N	MS	Glu	Met	Ile	Lys	Ser	Gly	Met	Asn	Vidmar et al., 2017
Pyruvate kinase PKM	P14618		peptide-Ser222+Glu-peptide	N	MS	Pro	Ala	Val	Ser	Glu	Lys	Asp	Ile	Vidmar et al., 2017
Pyruvate kinase PKM	P14618		peptide-Met360+Leu-peptide	N	MS	Asp	Cys	Ile	Met	Leu	Ser	Gly	Glu	Vidmar et al., 2017
Pyruvate kinase PKM	P14618		peptide-Ala23+Asp-peptide	N	MS	Ala	Ala	Met	Ala	Asp	Thr	Phe	Leu	Vidmar et al., 2017
Pyruvate kinase PKM	P14618		peptide-Thr454+Arg-peptide	N	MS	Ile	Ala	Val	Thr	Arg	Asn	Pro	Gln	Vidmar et al., 2017
Pyruvate kinase PKM	P14618		peptide-Asn75+Phe-peptide	N	MS	Ala	Arg	Leu	Asn	Phe	Ser	His	Gly	Vidmar et al., 2017
Rab GDP dissociation inhibitor alpha	P31150	424-435	Met-Ala-Gly426+Thr-Peptide	N	MS	-	Met	Ala	Gly	Thr	Ala	Phe	Asp	Biniossek et al., 2011
Rab GDP dissociation inhibitor beta	P50395		peptide-Thr425+Gly-peptide	N	MS	Lys	Arg	Met	Thr	Gly	Ser	Glu	Phe	Vidmar et al., 2017
Rab GDP dissociation inhibitor beta	P50395		peptide-Gly232+Glu-peptide	N	MS	Tyr	Gly	Leu	Gly	Glu	Leu	Pro	Gln	Vidmar et al., 2017
RalBP1-associated Eps domain-containing protein 1	Q96D71	692-704	Thr-Thr-Pro-Leu696+Ala-Peptide	N	MS	Thr	Thr	Pro	Leu	Ala	Pro	Pro	Pro	Biniossek et al., 2011
Ran-binding protein 3	Q9H6Z4	146-165	Peptide-His151+Gly-Peptide	N	MS	Thr	Leu	Ile	His	Gly	Gln	Ala	Pro	Biniossek et al., 2011
Ran-specific GTPase-activating protein	P43487	119-138	Ala-Trp-Val-Trp122+Asn-Peptide	N	MS	Ala	Trp	Val	Trp	Asn	Thr	His	Ala	Biniossek et al., 2011
Ran-specific GTPase-activating protein	P43487		peptide-Ser32+Leu-peptide	N	MS	Pro	Ile	Val	Ser	Leu	Pro	Glu	Gln	Vidmar et al., 2017
Ras GTPase-activating protein-binding protein 1	Q13283	377-393	Peptide-Gly381+Phe-Peptide	N	MS	Pro	Asn	Phe	Gly	Phe	Val	Val	Phe	Biniossek et al., 2011
Ras GTPase-activating protein-binding protein 1	Q13283	258-276	Peptide-Thr268+Gly-Peptide	N	MS	Val	Pro	Val	Thr	Gly	Ile	Pro	Pro	Biniossek et al., 2011
Ras GTPase-activating protein-binding protein 2	Q9UN86	161-205	Peptide-Glu190+Glu-Peptide	N	MS	Glu	Pro	Leu	Glu	Glu	Ser	Ser	His	Biniossek et al., 2011
Ras GTPase-activating-like protein IQGAP1	P46940	1398-1422	Peptide-Glu1409+Thr-Peptide	N	MS	Glu	Ile	Leu	Glu	Thr	Pro	Ala	Thr	Biniossek et al., 2011
Ras-related C3 botulinum toxin substrate 1	P63000		peptide-Lys166+Thr-peptide	N	MS	Arg	Gly	Leu	Lys	Thr	Val	Phe	Asp	Vidmar et al., 2017
Ras-related C3 botulinum toxin substrate 1	P63000		peptide-Ser83+Leu-peptide	N	MS	Ile	Cys	Phe	Ser	Leu	Val	Ser	Pro	Vidmar et al., 2017
Ras-related GTP-binding protein C	Q9HB90	25-63	Peptide-Gly45+Ala-Peptide	N	MS	Gly	Gly	Val	Gly	Ala	Gly	Ala	Gly	Biniossek et al., 2011
Ras-related protein Rab-11A	P62491		peptide-Arg132+Ala-peptide	N	MS	Arg	His	Leu	Arg	Ala	Val	Pro	Thr	Vidmar et al., 2017
Ras-related protein Rab-7a	P51149		peptide-Gln109+Ala-peptide	N	MS	Phe	Leu	Ile	Gln	Ala	Ser	Pro	Arg	Vidmar et al., 2017
Receptor of activated protein C kinase 1	P63244		peptide-Cys207+Ala-peptide	N	MS	Gly	Ser	Leu	Cys	Ala	Ser	Gly	Gly	Vidmar et al., 2017
Receptor of activated protein C kinase 1	P63244		peptide-Cys249+Ala-peptide	N	MS	Tyr	Trp	Leu	Cys	Ala	Ala	Thr	Gly	Vidmar et al., 2017
Regulation of nuclear pre-mRNA domain-containing protein 1A	Q96P16	169-186	Peptide-Glu174+Asn-Peptide	N	MS	Gln	Asp	Leu	Glu	Asn	Ala	Ala	Ser	Biniossek et al., 2011
Regulator of nonsense transcripts 3B	Q9BZI7	14-42	Val-Thr-Leu-Leu17+Thr-Peptide	N	MS	Val	Thr	Leu	Leu	Thr	Pro	Ala	Gly	Biniossek et al., 2011
Replication protein A 70 kDa DNA-binding subunit	P27694	514-551	Peptide-Gly541+Gln-Peptide	N	MS	Ala	Ile	Leu	Gly	Gln	Asn	Ala	Ala	Biniossek et al., 2011
Reticulocalbin-1	Q15293		peptide-Gly65+Lys-peptide	N	MS	Ala	Phe	Leu	Gly	Lys	Glu	Asp	Ser	Vidmar et al., 2017
Reticulocalbin-1	Q15293		peptide-Arg34+Lys-peptide	N	MS	Pro	Thr	Val	Arg	Lys	Glu	Arg	Val	Vidmar et al., 2017
Reticulocalbin-1	Q15293		peptide-Gly85+Lys-peptide	N	MS	Glu	Arg	Leu	Gly	Lys	Ile	Val	Asp	Vidmar et al., 2017
Reticulocalbin-1	Q15293		peptide-Gly314+Ser-peptide	N	MS	Met	Phe	Val	Gly	Ser	Gln	Ala	Thr	Vidmar et al., 2017
Reticulon-4	Q9NQC3		peptide-Ser124+Ala-peptide	N	MS	Ser	Pro	Leu	Ser	Ala	Ala	Ala	Val	Vidmar et al., 2017
Reticulon-4	Q9NQC3		peptide-Ala127+Val-peptide	N	MS	Ser	Ala	Ala	Ala	Val	Ser	Pro	Ser	Vidmar et al., 2017
Reticulon-4	Q9NQC3		peptide-Ser64+Ala-peptide	N	MS	Ala	Gly	Leu	Ser	Ala	Ala	Pro	Val	Vidmar et al., 2017
Reticulon-4	Q9NQC3		peptide-Asp80+Phe-peptide	N	MS	Pro	Leu	Met	Asp	Phe	Gly	Asn	Asp	Vidmar et al., 2017
Reticulon-4	Q9NQC3		peptide-Gly82+Asn-peptide	N	MS	Met	Asp	Phe	Gly	Asn	Asp	Phe	Val	Vidmar et al., 2017
Reticulon-4	Q9NQC3		peptide-Pro95+Ala-peptide	N	MS	Gly	Pro	Leu	Pro	Ala	Ala	Pro	Pro	Vidmar et al., 2017
Reticulon-4	Q9NQC3		peptide-Met79+Asp-peptide	N	MS	Ala	Pro	Leu	Met	Asp	Phe	Gly	Asn	Vidmar et al., 2017
Reticulon-4	Q9NQC3		peptide-Ser11+Ser-peptide	N	MS	Pro	Leu	Val	Ser	Ser	Ser	Asp	Ser	Vidmar et al., 2017
Rho GDP-dissociation inhibitor 1	P52565	59-99	Peptide-Asp89+Met-Peptide	N	MS	Leu	Glu	Leu	Asp	Leu	Thr	Gly	Asp	Biniossek et al., 2011
Rho GDP-dissociation inhibitor 1	P52565	34-49	Peptide-Gln39+Glu-Peptide	N	MS	Gln	Glu	Ile	Gln	Glu	Leu	Asp	Lys	Biniossek et al., 2011
Rho GDP-dissociation inhibitor 1	P52565		peptide-Arg134+Lys-peptide	N	MS	His	Thr	Tyr	Arg	Lys	Gly	Val	Lys	Vidmar et al., 2017
Rho GDP-dissociation inhibitor 1	P52565		peptide-Lys33+Ser-peptide	N	MS	Pro	Ala	Gln	Lys	Ser	Ile	Gln	Glu	Vidmar et al., 2017
Rho GDP-dissociation inhibitor 1	P52565		peptide-Gly147+Ser-peptide	N	MS	Tyr	Met	Val	Gly	Ser	Tyr	Gly	Pro	Vidmar et al., 2017
Rho GDP-dissociation inhibitor 1	P52565		peptide-Thr91+Gly-peptide	N	MS	Leu	Asp	Leu	Thr	Gly	Asp	Leu	Glu	Vidmar et al., 2017
Rho GDP-dissociation inhibitor 1	P52565		peptide-Gln36+Glu-peptide	N	MS	Lys	Ser	Ile	Gln	Glu	Ile	Gln	Glu	Vidmar et al., 2017
Rho GDP-dissociation inhibitor 1	P52565		peptide-Ala12+Gln-peptide	N	MS	Glu	Gln	Leu	Ala	Gln	Ile	Ala	Ala	Vidmar et al., 2017
Rho GDP-dissociation inhibitor 2	P52566		peptide-Gly144+Ser-peptide	N	MS	Phe	Met	Val	Gly	Ser	Tyr	Gly	Pro	Vidmar et al., 2017
Rho GDP-dissociation inhibitor 2	P52566		peptide-Thr60+Asp-peptide	N	MS	Pro	Val	Val	Thr	Asp	Pro	Lys	Ala	Vidmar et al., 2017
Rho GTPase-activating protein 1	Q07960		peptide-Leu423+Leu-peptide	N	MS	Thr	Lys	Phe	Leu	Leu	Asp	His	Gln	Vidmar et al., 2017
Rho GTPase-activating protein 1	Q07960		peptide-Thr12+Leu-peptide	N	MS	Asp	Asp	Leu	Thr	Leu	Asp	Asp	Thr	Vidmar et al., 2017
Ribonuclease inhibitor	P13489		peptide-Arg167+Ala-peptide	N	MS	Ser	Val	Leu	Arg	Ala	Lys	Pro	Asp	Vidmar et al., 2017
Ribonuclease inhibitor	P13489		peptide-Ser290+Leu-peptide	N	MS	Lys	Glu	Leu	Ser	Leu	Ala	Gly	Asn	Vidmar et al., 2017
Ribonuclease inhibitor	P13489		peptide-Thr176+Val-peptide	N	MS	Lys	Glu	Leu	Thr	Val	Ser	Asn	Asn	Vidmar et al., 2017
Ribosomal RNA processing protein 1 homolog B	Q14684	485-511	Peptide-Ser498+Gln-Peptide	N	MS	Glu	Asp	Met	Ser	Gln	Ser	Gly	Pro	Biniossek et al., 2011
Ribosome-binding protein 1	Q9P2E9		peptide-Thr1312+Ala-peptide	N	MS	Gln	Lys	Leu	Thr	Ala	Glu	Phe	Glu	Vidmar et al., 2017
Ribosome-binding protein 1	Q9P2E9		peptide-Glu856+Ala-peptide	N	MS	Lys	Ala	Leu	Glu	Ala	Lys	Ala	Ala	Vidmar et al., 2017
Ribosome-binding protein 1	Q9P2E9		peptide-Gln1293+Leu-peptide	N	MS	Leu	Lys	Thr	Gln	Leu	Glu	Trp	Thr	Vidmar et al., 2017
Ribosome-binding protein 1	Q9P2E9		peptide-Gln881+Lys-peptide	N	MS	Glu	Ala	Leu	Gln	Lys	Arg	Leu	Asp	Vidmar et al., 2017
Ribosome-binding protein 1	Q9P2E9		peptide-Lys1375+Thr-peptide	N	MS	Glu	Leu	Leu	Lys	Thr	Thr	Gln	Glu	Vidmar et al., 2017
Ribulose-phosphate 3-epimerase	Q96AT9	82-106	Peptide-Glu96+Ala-Peptide	N	MS	Phe	His	Leu	Glu	Ala	Thr	Glu	Asn	Biniossek et al., 2011
RNA-binding protein 12	Q9NTZ6	752-859	Peptide-Ser848+Ser-Peptide	N	MS	Gly	Phe	Ala	Ser	Ser	Ser	Gly	Lys	Biniossek et al., 2011
RNA-binding protein 12	Q9NTZ6	752-859	Peptide-Ala847+Ser-Peptide	N	MS	Pro	Gly	Phe	Ala	Ser	Ser	Ser	Gly	Biniossek et al., 2011
RNA-binding protein 12	Q9NTZ6	381-392	Gln-Trp-Val-Ala384+Ala-Peptide	N	MS	Gln	Trp	Val	Ala	Ala	Gly	Gly	His	Biniossek et al., 2011
RNA-binding protein 25	P49756	217-234	Peptide-Asn223+Ala-Peptide	N	MS	Ser	Glu	Leu	Asn	Ala	Pro	Ser	Gln	Biniossek et al., 2011
RNA-binding protein 25	P49756	550-564	Peptide-Ala552+Glu-Peptide	N	MS	-	Leu	Leu	Ala	Glu	Gly	His	Pro	Biniossek et al., 2011
RNA-binding protein 4	Q9BWF3	36-45	Asn-Tyr-Gly38+Phe-Peptide	N	MS	-	Asn	Tyr	Gly	Phe	Val	His	Ile	Biniossek et al., 2011
RNA-binding protein 8A	Q9Y5S9		peptide-Gly141+Gln-peptide	N	MS	Asp	Leu	Met	Gly	Gln	Pro	Ile	Ser	Vidmar et al., 2017
S-adenosylmethionine synthase isoform type-2	P31153	1-34	Peptide-Gly26+Glu-Peptide	N	MS	Glu	Ser	Val	Gly	Glu	Gly	His	Pro	Biniossek et al., 2011
S-formylglutathione hydrolase	P10768	45-64	Peptide-Thr55+Cys-Peptide	N	MS	Ser	Gly	Leu	Thr	Cys	Thr	Glu	Gln	Biniossek et al., 2011
SAP domain-containing ribonucleoprotein	P82979	181-199	Peptide-Thr185+Ser-Peptide	N	MS	Gly	Ile	Val	Thr	Ser	Ser	Ala	Gly	Biniossek et al., 2011
Sarcoplasmic/endoplasmic reticulum calcium ATPase 2	P16615		peptide-Lys514+Gly-peptide	N	MS	Met	Phe	Val	Lys	Gly	Ala	Pro	Glu	Vidmar et al., 2017
Scaffold attachment factor B1	Q15424		peptide-Gln634+Ala-peptide	N	MS	Gln	Arg	Met	Gln	Ala	Gln	Trp	Glu	Vidmar et al., 2017
Secernin-1	Q12765		peptide-Cys89+Ile-peptide	N	MS	His	Gly	Val	Cys	Ile	Ala	Asn	Glu	Vidmar et al., 2017
Secernin-1	Q12765		peptide-Arg302+Ser-peptide	N	MS	Asp	Pro	Ser	Arg	Ser	Ile	Phe	Lys	Vidmar et al., 2017
Septin-2	Q15019		peptide-Lys305+Arg-peptide	N	MS	Glu	Arg	Leu	Lys	Arg	Gly	Gly	Arg	Vidmar et al., 2017
Septin-7	Q16181	64-86	Peptide-Tyr76+Ser-Peptide	N	MS	Thr	Asp	Leu	Tyr	Ser	Pro	Glu	Tyr	Biniossek et al., 2011
Serine hydroxymethyltransferase, mitochondrial	P34897		peptide-Asp385+Leu-peptide	N	MS	Val	Leu	Val	Asp	Leu	Arg	Pro	Lys	Vidmar et al., 2017
Serine hydroxymethyltransferase, mitochondrial	P34897		peptide-Ser50+Asp-peptide	N	MS	Glu	Ser	Leu	Ser	Asp	Ser	Asp	Pro	Vidmar et al., 2017
Serine hydroxymethyltransferase, mitochondrial	P34897		peptide-Ser404+Ile-peptide	N	MS	Glu	Leu	Val	Ser	Ile	Thr	Ala	Asn	Vidmar et al., 2017
Serine hydroxymethyltransferase, mitochondrial	P34897		peptide-Ala493+Arg-peptide	N	MS	Glu	Gln	Phe	Ala	Arg	Ala	Phe	Pro	Vidmar et al., 2017
Serine hydroxymethyltransferase, mitochondrial	P34897		peptide-Lys474+Asp-peptide	N	MS	Phe	Leu	Leu	Lys	Asp	Ser	Glu	Thr	Vidmar et al., 2017
Serine--tRNA ligase, cytoplasmic	P49591		peptide-Lys28+Asp-peptide	N	MS	Lys	Arg	Phe	Lys	Asp	Pro	Gly	Leu	Vidmar et al., 2017
Serine/arginine-rich splicing factor 1	Q07955		peptide-Arg181+Ser-peptide	N	MS	Thr	Lys	Phe	Arg	Ser	His	Glu	Gly	Vidmar et al., 2017
Serine/arginine-rich splicing factor 1	Q07955		peptide-Glu60+Phe-peptide	N	MS	Ala	Phe	Val	Glu	Phe	Glu	Asp	Pro	Vidmar et al., 2017
Serine/arginine-rich splicing factor 1	Q07955		peptide-Arg8+Gly-peptide	N	MS	Gly	Val	Ile	Arg	Gly	Pro	Ala	Gly	Vidmar et al., 2017
Serine/arginine-rich splicing factor 2	Q01130		peptide-Arg61+Phe-peptide	N	MS	Ala	Phe	Val	Arg	Phe	His	Asp	Lys	Vidmar et al., 2017
Serine/arginine-rich splicing factor 3	P84103		peptide-Glu52+Phe-peptide	N	MS	Ala	Phe	Val	Glu	Phe	Glu	Asp	Pro	Vidmar et al., 2017
Serine/arginine-rich splicing factor 3	P84103		peptide-Ala42+Arg-peptide	N	MS	Val	Trp	Val	Ala	Arg	Asn	Pro	Pro	Vidmar et al., 2017
Serine/arginine-rich splicing factor 6	Q13247		peptide-Lys160+Arg-peptide	N	MS	Ser	Asp	Met	Lys	Arg	Ala	Leu	Asp	Vidmar et al., 2017
Serine/arginine-rich splicing factor 7	Q16629		peptide-Glu53+Phe-peptide	N	MS	Ala	Phe	Val	Glu	Phe	Glu	Asp	Pro	Vidmar et al., 2017
Serine/arginine-rich splicing factor 7	Q16629		peptide-Asp92+Arg-peptide	N	MS	Ser	Arg	Phe	Asp	Arg	Pro	Pro	Ala	Vidmar et al., 2017
Serine/threonine-protein kinase 24	Q9Y6E0	246-260	Peptide-Glu252+Gly-Peptide	N	MS	Pro	Thr	Leu	Glu	Gly	Asn	Tyr	Ser	Biniossek et al., 2011
Serine/threonine-protein kinase MST4	Q9P289	95-112	Peptide-Gly103+Gly-Peptide	N	MS	Glu	Tyr	Leu	Gly	Gly	Gly	Ser	Ala	Biniossek et al., 2011
Serine/threonine-protein kinase Nek1	Q96PY6		peptide-Leu1035+Ser-peptide	N	MS	Leu	Ile	Gly	Leu	Ser	Thr	Gly	Leu	Vidmar et al., 2017
Serine/threonine-protein kinase Nek7	Q8TDX7		peptide-Gln9+Gly-peptide	N	MS	Gln	Gly	Met	Gln	Gly	Pro	Pro	Val	Vidmar et al., 2017
Serine/threonine-protein kinase PAK 2	Q13177		peptide-Ser141+Phe-peptide	N	MS	Lys	Tyr	Leu	Ser	Phe	Thr	Pro	Pro	Vidmar et al., 2017
Serine/threonine-protein kinase PAK 2	Q13177		peptide-Thr96+Gly-peptide	N	MS	Gly	Glu	Phe	Thr	Gly	Met	Pro	Glu	Vidmar et al., 2017
Serine/threonine-protein kinase PAK 2	Q13177		peptide-Thr195+Arg-peptide	N	MS	Ser	Ile	Tyr	Thr	Arg	Ser	Val	Ile	Vidmar et al., 2017
Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	P30153	114-133	Peptide-Glu125+Ala-Peptide	N	MS	Ser	Asp	Leu	Glu	Ala	His	Phe	Val	Biniossek et al., 2011
Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	P30153	476-485	Glu-Trp-Ala478+His-Peptide	N	MS	-	Glu	Trp	Ala	His	Ala	Thr	Ile	Biniossek et al., 2011
Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform	P67775	145-181	Peptide-His167+Gly-Peptide	N	MS	Phe	Cys	Leu	His	Gly	Gly	Leu	Ser	Biniossek et al., 2011
Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform	P67775		peptide-Leu199+Trp-peptide	N	MS	Cys	Asp	Leu	Leu	Trp	Ser	Asp	Pro	Vidmar et al., 2017
Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform	P67775		peptide-Thr7+Lys-peptide	N	MS	Lys	Val	Phe	Thr	Lys	Glu	Leu	Asp	Vidmar et al., 2017
Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	P62136		peptide-Asn8+Leu-peptide	N	MS	Glu	Lys	Leu	Asn	Leu	Asp	Ser	Ile	Vidmar et al., 2017
Serine/threonine-protein phosphatase PP1-beta catalytic subunit	P62140	304-319	Peptide-Asn310+Ser-Peptide	N	MS	Gly	Gly	Leu	Asn	Ser	Gly	Arg	Pro	Biniossek et al., 2011
Serpin H1	P50454		peptide-Gln171+Ser-peptide	N	MS	Ser	Ala	Leu	Gln	Ser	Ile	Asn	Glu	Vidmar et al., 2017
Serpin H1	P50454		peptide-Glu358+Leu-peptide	N	MS	Thr	Ala	Phe	Glu	Leu	Asp	Thr	Asp	Vidmar et al., 2017
Serum albumin	Q56G89	45-65	Peptide-Gln56+Gln-Peptide	N	MS	Gln	Tyr	Leu	Gln	Gln	Cys	Pro	Phe	Biniossek et al., 2011
SET and MYND domain-containing protein 5	Q6GMV2	125-150	Peptide-Leu135+Cys-Peptide	N	MS	His	Gln	Val	Leu	Cys	Pro	Gly	Pro	Biniossek et al., 2011
Sialic acid synthase	Q9NR45	87-96	His-Leu-Glu89+Phe-Peptide	N	MS	-	His	Leu	Glu	Phe	Ser	His	Asp	Biniossek et al., 2011
Sialic acid synthase	Q9NR45	12-37	Peptide-Gly26+Gln-Peptide	N	MS	Ala	Glu	Ile	Gly	Gln	Asn	His	Gln	Biniossek et al., 2011
Sialic acid synthase	Q9NR45		peptide-Thr338+Val-peptide	N	MS	Val	Leu	Val	Thr	Val	Glu	Glu	Asp	Vidmar et al., 2017
Sialic acid synthase	Q9NR45		peptide-Gln170+Ile-peptide	N	MS	Gln	Val	Tyr	Gln	Ile	Val	Lys	Pro	Vidmar et al., 2017
Sialic acid synthase	Q9NR45		peptide-Thr185+Ser-peptide	N	MS	Leu	Gln	Cys	Thr	Ser	Ala	Tyr	Pro	Vidmar et al., 2017
Signal recognition particle 68 kDa protein	Q9UHB9	524-549	Peptide-Asp534+Ala-Peptide	N	MS	Ala	Ile	Leu	Asp	Ala	Asn	Asp	Ala	Biniossek et al., 2011
Signal recognition particle 72 kDa protein	O76094	357-376	Peptide-Ser365+Asp-Peptide	N	MS	Gln	Glu	Phe	Ser	Asp	Gln	His	Pro	Biniossek et al., 2011
Small acidic protein	O00193	15-37	Peptide-Gly23+Ser-Peptide	N	MS	Asp	Asp	Leu	Gly	Ser	Ser	Asn	Trp	Biniossek et al., 2011
Small nuclear ribonucleoprotein F	P62306	9-22	Peptide-Thr15+Gly-Peptide	N	MS	Asn	Gly	Leu	Thr	Gly	Lys	Pro	Val	Biniossek et al., 2011
Sodium/potassium-transporting ATPase subunit alpha-1	P05023		peptide-Gly735+Ile-peptide	N	MS	Val	Ala	Met	Gly	Ile	Ala	Gly	Ser	Vidmar et al., 2017
Sodium/potassium-transporting ATPase subunit alpha-1	P05023		peptide-Phe433+Gln-peptide	N	MS	Arg	Ala	Val	Phe	Gln	Ala	Asn	Gln	Vidmar et al., 2017
Sodium/potassium-transporting ATPase subunit alpha-1	P05023		peptide-Met507+Lys-peptide	N	MS	Leu	Leu	Val	Met	Lys	Gly	Ala	Pro	Vidmar et al., 2017
Sodium/potassium-transporting ATPase subunit alpha-1	P05023		peptide-Ser40+Met-peptide	N	MS	Lys	Glu	Val	Ser	Met	Asp	Asp	His	Vidmar et al., 2017
Sodium/potassium-transporting ATPase subunit alpha-1	P05023		peptide-Gly368+Ser-peptide	N	MS	Glu	Thr	Leu	Gly	Ser	Thr	Ser	Thr	Vidmar et al., 2017
Sodium/potassium-transporting ATPase subunit alpha-1	P05023		peptide-Leu523+His-peptide	N	MS	Ser	Ile	Leu	Leu	His	Gly	Lys	Glu	Vidmar et al., 2017
Sodium/potassium-transporting ATPase subunit alpha-1	P05023		peptide-Thr226+Arg-peptide	N	MS	Glu	Pro	Gln	Thr	Arg	Ser	Pro	Asp	Vidmar et al., 2017
Sodium/potassium-transporting ATPase subunit alpha-1	P05023		peptide-Lys444+Arg-peptide	N	MS	Pro	Ile	Leu	Lys	Arg	Ala	Val	Ala	Vidmar et al., 2017
Sodium/potassium-transporting ATPase subunit alpha-1	P05023		peptide-Lys508+Gly-peptide	N	MS	Leu	Val	Met	Lys	Gly	Ala	Pro	Glu	Vidmar et al., 2017
Sodium/potassium-transporting ATPase subunit alpha-1	P05023		peptide-Gly632+Ile-peptide	N	MS	Lys	Gly	Val	Gly	Ile	Ile	Ser	Glu	Vidmar et al., 2017
Solute carrier family 2, facilitated glucose transporter member 1	P11166		peptide-Arg468+Gln-peptide	N	MS	Ser	Gly	Phe	Arg	Gln	Gly	Gly	Ala	Vidmar et al., 2017
Sorting nexin-2	O60749	347-362	Peptide-Leu351+Gly-Peptide	N	MS	Ala	Ala	Met	Leu	Gly	Asn	Ser	Glu	Biniossek et al., 2011
Sorting nexin-2	O60749	347-362	Peptide-Gly352+Asn-Peptide	N	MS	Ala	Met	Leu	Gly	Asn	Ser	Glu	Asp	Biniossek et al., 2011
Spectrin alpha chain, brain	Q13813	1299-1313	Leu-IIe-Gln1301+Ser-Peptide	N	MS	-	Leu	Ile	Gln	Ser	His	Pro	Glu	Biniossek et al., 2011
Spectrin alpha chain, non-erythrocytic 1	Q13813		peptide-Gln1130+Lys-peptide	N	MS	Glu	Val	Leu	Gln	Lys	Lys	Phe	Asp	Vidmar et al., 2017
Spectrin alpha chain, non-erythrocytic 1	Q13813		peptide-Lys1148+Asp-peptide	N	MS	Ser	Arg	Leu	Lys	Asp	Ile	Asn	Lys	Vidmar et al., 2017
Spectrin alpha chain, non-erythrocytic 1	Q13813		peptide-Gln2029+Gln-peptide	N	MS	Gln	Ala	Phe	Gln	Gln	Glu	Gly	Ile	Vidmar et al., 2017
Spectrin alpha chain, non-erythrocytic 1	Q13813		peptide-Leu973+Ala-peptide	N	MS	Glu	Leu	Val	Leu	Ala	Leu	Tyr	Asp	Vidmar et al., 2017
Spectrin alpha chain, non-erythrocytic 1	Q13813		peptide-Gln830+Ala-peptide	N	MS	Gln	Ala	Leu	Gln	Ala	Glu	Ile	Ala	Vidmar et al., 2017
Spectrin alpha chain, non-erythrocytic 1	Q13813		peptide-Lys876+Ala-peptide	N	MS	Glu	Ala	Leu	Lys	Ala	Lys	Ala	Ser	Vidmar et al., 2017
Spectrin alpha chain, non-erythrocytic 1	Q13813		peptide-Ala1814+Ala-peptide	N	MS	Ala	Glu	Leu	Ala	Ala	His	Glu	Pro	Vidmar et al., 2017
Spectrin alpha chain, non-erythrocytic 1	Q13813		peptide-Gln787+Gln-peptide	N	MS	Leu	Arg	Leu	Gln	Gln	Leu	Phe	Arg	Vidmar et al., 2017
Spectrin alpha chain, non-erythrocytic 1	Q13813		peptide-Gln50+Arg-peptide	N	MS	Gln	Phe	Phe	Gln	Arg	Asp	Ala	Glu	Vidmar et al., 2017
Spectrin alpha chain, non-erythrocytic 1	Q13813		peptide-Gln1219+Gln-peptide	N	MS	Arg	Ser	Leu	Gln	Gln	Leu	Ala	Glu	Vidmar et al., 2017
Spectrin alpha chain, non-erythrocytic 1	Q13813		peptide-Leu1824+Asp-peptide	N	MS	Gln	Gly	Val	Leu	Asp	Thr	Gly	Lys	Vidmar et al., 2017
Spectrin alpha chain, non-erythrocytic 1	Q13813		peptide-Glu852+Glu-peptide	N	MS	Ala	Met	Val	Glu	Glu	Gly	His	Phe	Vidmar et al., 2017
Spectrin alpha chain, non-erythrocytic 1	Q13813		peptide-Gln1272+Arg-peptide	N	MS	Gln	Ala	Leu	Gln	Arg	Lys	His	Glu	Vidmar et al., 2017
Spectrin alpha chain, non-erythrocytic 1	Q13813		peptide-Ser2141+Ser-peptide	N	MS	Ser	Ser	Leu	Ser	Ser	Ala	Gln	Ala	Vidmar et al., 2017
Spectrin alpha chain, non-erythrocytic 1	Q13813		peptide-Gln891+Ala-peptide	N	MS	Asp	Ser	Leu	Gln	Ala	Gln	Gln	Tyr	Vidmar et al., 2017
Spectrin alpha chain, non-erythrocytic 1	Q13813		peptide-Gly1293+Glu-peptide	N	MS	Asn	Ser	Leu	Gly	Glu	Thr	Ala	Glu	Vidmar et al., 2017
Spectrin alpha chain, non-erythrocytic 1	Q13813		peptide-Lys2404+Ser-peptide	N	MS	Glu	Asn	Val	Lys	Ser	Ser	Glu	Glu	Vidmar et al., 2017
Spectrin alpha chain, non-erythrocytic 1	Q13813		peptide-Ala897+Asp-peptide	N	MS	Gln	Tyr	Phe	Ala	Asp	Ala	Asn	Glu	Vidmar et al., 2017
Spectrin alpha chain, non-erythrocytic 1	Q13813		peptide-Leu9+Glu-peptide	N	MS	Val	Lys	Val	Leu	Glu	Thr	Ala	Glu	Vidmar et al., 2017
Spectrin alpha chain, non-erythrocytic 1	Q13813		peptide-Lys594+Thr-peptide	N	MS	Glu	Lys	Met	Lys	Thr	Ala	Thr	Asp	Vidmar et al., 2017
Spectrin beta chain, non-erythrocytic 1	Q01082		peptide-Gln1145+Ala-peptide	N	MS	Gln	Arg	Leu	Gln	Ala	Leu	Asp	Thr	Vidmar et al., 2017
Spectrin beta chain, non-erythrocytic 1	Q01082		peptide-Asp1148+Thr-peptide	N	MS	Gln	Ala	Leu	Asp	Thr	Gly	Trp	Asn	Vidmar et al., 2017
Spectrin beta chain, non-erythrocytic 1	Q01082		peptide-Glu862+Leu-peptide	N	MS	Asp	Ala	Cys	Glu	Leu	Trp	Ile	Asp	Vidmar et al., 2017
Spectrin beta chain, non-erythrocytic 1	Q01082		peptide-Asp1756+Thr-peptide	N	MS	Glu	Arg	Val	Asp	Thr	Val	Asn	His	Vidmar et al., 2017
Spectrin beta chain, non-erythrocytic 1	Q01082		peptide-Gln1871+Ala-peptide	N	MS	Ala	Arg	Leu	Gln	Ala	Ala	Tyr	Ala	Vidmar et al., 2017
Spectrin beta chain, non-erythrocytic 1	Q01082		peptide-Thr1129+Gln-peptide	N	MS	Glu	Met	Val	Thr	Gln	Gly	Gln	Thr	Vidmar et al., 2017
Spectrin beta chain, non-erythrocytic 1	Q01082		peptide-Ala1483+Ser-peptide	N	MS	Asn	Leu	Leu	Ala	Ser	Lys	Glu	Ile	Vidmar et al., 2017
Spectrin beta chain, non-erythrocytic 1	Q01082		peptide-Arg434+Glu-peptide	N	MS	Ala	Ala	Met	Arg	Glu	Thr	Trp	Leu	Vidmar et al., 2017
Spectrin beta chain, non-erythrocytic 1	Q01082		peptide-Gln235+Asn-peptide	N	MS	Tyr	Asn	Leu	Gln	Asn	Ala	Phe	Asn	Vidmar et al., 2017
Spectrin beta chain, non-erythrocytic 1	Q01082		peptide-Ser1447+Gln-peptide	N	MS	Gln	Ala	Leu	Ser	Gln	Glu	Gly	Lys	Vidmar et al., 2017
Spectrin beta chain, non-erythrocytic 1	Q01082		peptide-Glu1792+Leu-peptide	N	MS	Asp	Leu	Leu	Glu	Leu	Ile	Asp	Thr	Vidmar et al., 2017
Spectrin beta chain, non-erythrocytic 1	Q01082		peptide-Gln876+Ile-peptide	N	MS	Asn	Asn	Met	Gln	Ile	Pro	Glu	Lys	Vidmar et al., 2017
Spectrin beta chain, non-erythrocytic 1	Q01082		peptide-His1846+Thr-peptide	N	MS	Gln	Arg	Met	His	Thr	Thr	Phe	Glu	Vidmar et al., 2017
Spectrin beta chain, non-erythrocytic 1	Q01082		peptide-Leu677+Ser-peptide	N	MS	Met	Arg	Leu	Leu	Ser	Lys	His	Arg	Vidmar et al., 2017
Spectrin beta chain, non-erythrocytic 1	Q01082		peptide-Gly2046+Gln-peptide	N	MS	Arg	Glu	Ile	Gly	Gln	Ser	Val	Asp	Vidmar et al., 2017
Spectrin beta chain, non-erythrocytic 1	Q01082		peptide-Lys1684+Asp-peptide	N	MS	Ala	Gly	Leu	Lys	Asp	Leu	Ala	Glu	Vidmar et al., 2017
Spectrin beta chain, non-erythrocytic 1	Q01082		peptide-Ala1660+Asp-peptide	N	MS	Ala	Leu	Val	Ala	Asp	Ser	His	Pro	Vidmar et al., 2017
Spectrin beta chain, non-erythrocytic 1	Q01082		peptide-His804+Glu-peptide	N	MS	Asp	Thr	Leu	His	Glu	Gln	Ala	Ser	Vidmar et al., 2017
Spectrin beta chain, non-erythrocytic 1	Q01082		peptide-Glu892+Ser-peptide	N	MS	His	Arg	Phe	Glu	Ser	Leu	Glu	Pro	Vidmar et al., 2017
Spectrin beta chain, non-erythrocytic 1	Q01082		peptide-Lys832+Glu-peptide	N	MS	Glu	Arg	Tyr	Lys	Glu	Val	Ala	Glu	Vidmar et al., 2017
Spermatogenesis-associated protein 5-like protein 1	Q9BVQ7	257-283	Peptide-Gln271+Gly-Peptide	N	MS	Pro	Ala	Leu	Gln	Gly	Ser	Arg	Pro	Biniossek et al., 2011
Spermine synthase	P52788		peptide-Ser283+Thr-peptide	N	MS	Val	Pro	Ile	Ser	Thr	Ser	Pro	Glu	Vidmar et al., 2017
Splicing factor 3B subunit 2	Q13435		peptide-Arg247+Gly-peptide	N	MS	Pro	Arg	Pro	Arg	Gly	Pro	Pro	Pro	Vidmar et al., 2017
Splicing factor 3B subunit 2	Q13435		peptide-Arg71+Gly-peptide	N	MS	Pro	Val	Leu	Arg	Gly	Glu	Asp	Gly	Vidmar et al., 2017
Splicing factor 3B subunit 2	Q13435		peptide-Gln14+Leu-peptide	N	MS	Ala	Glu	Leu	Gln	Leu	Pro	Pro	Pro	Vidmar et al., 2017
Splicing factor 3B subunit 2	Q13435		peptide-Gly200+Thr-peptide	N	MS	Ala	Lys	Met	Gly	Thr	Pro	Val	Pro	Vidmar et al., 2017
Splicing factor 3B subunit 6	Q9Y3B4		peptide-Lys29+Ile-peptide	N	MS	Leu	Pro	Tyr	Lys	Ile	Thr	Ala	Glu	Vidmar et al., 2017
Splicing factor, proline- and glutamine-rich	P23246		peptide-Phe300+Val-peptide	N	MS	Cys	Arg	Leu	Phe	Val	Gly	Asn	Leu	Vidmar et al., 2017
Splicing factor, proline- and glutamine-rich	P23246		peptide-Thr439+Thr-peptide	N	MS	Phe	Leu	Leu	Thr	Thr	Thr	Pro	Arg	Vidmar et al., 2017
SRA stem-loop-interacting RNA-binding protein, mitochondrial	Q9GZT3		peptide-Gln66+Phe-peptide	N	MS	Gly	Trp	Val	Gln	Phe	Ser	Ser	Glu	Vidmar et al., 2017
SRSF protein kinase 2	P78362	196-207	Peptide-Gln199+Gly-Peptide	N	MS	Gln	Val	Leu	Gln	Gly	Leu	Asp	Tyr	Biniossek et al., 2011
SRSF protein kinase 2	P78362	242-263	Peptide-Ser253+Thr-Peptide	N	MS	Ser	Ala	Val	Ser	Thr	Ala	Pro	Gln	Biniossek et al., 2011
Stathmin	P16949		peptide-Gln84+Lys-peptide	N	MS	Glu	Val	Leu	Gln	Lys	Ala	Ile	Glu	Vidmar et al., 2017
STE20-like serine/threonine-protein kinase	Q9H2G2	380-392	IIe-Leu-Asn382+Glu-Peptide	N	MS	-	Ile	Leu	Asn	Glu	Lys	Pro	Thr	Biniossek et al., 2011
STE20-like serine/threonine-protein kinase	Q9H2G2	69-93	Peptide-Ala84+Ser-Peptide	N	MS	Asp	Ile	Leu	Ala	Ser	Cys	Asp	His	Biniossek et al., 2011
Sterol O-acyltransferase 1	P35610		peptide-Gly70+Ser-peptide	N	MS	Lys	Glu	Val	Gly	Ser	His	Phe	Asp	Vidmar et al., 2017
Sterol O-acyltransferase 1	P35610		peptide-Ser14+Lys-peptide	N	MS	Asn	Arg	Leu	Ser	Lys	Ser	Arg	Glu	Vidmar et al., 2017
Stress-70 protein, mitochondrial	P38646	266-284	Peptide-Gly274+Gly-Peptide	N	MS	Thr	Phe	Leu	Gly	Gly	Glu	Asp	Phe	Biniossek et al., 2011
Stress-70 protein, mitochondrial	P38646	579-595	Peptide-Ala585+Glu-Peptide	N	MS	Val	Asn	Met	Ala	Glu	Gly	Ile	Ile	Biniossek et al., 2011
Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial	P31040	262-282	Peptide-Thr267+Ser-Peptide	N	MS	Phe	Ser	Cys	Thr	Ser	Ala	His	Thr	Biniossek et al., 2011
Sulfatase-modifying factor 2	Q8NBJ7		peptide-Gly276+Asn-peptide	N	MS	Thr	Arg	Met	Gly	Asn	Thr	Pro	Asp	Vidmar et al., 2017
SUMO-activating enzyme subunit 1	Q9UBE0	153-178	Peptide-Gly170+Glu-Peptide	N	MS	Ala	Asn	Leu	Gly	Glu	His	Glu	Phe	Biniossek et al., 2011
SUMO-activating enzyme subunit 1	Q9UBE0		peptide-Thr64+Met-peptide	N	MS	Lys	Gly	Leu	Thr	Met	Leu	Asp	His	Vidmar et al., 2017
SUMO-activating enzyme subunit 2	Q9UBT2	20-34	Val-Leu-Val-Val23+Gly-Peptide	N	MS	Val	Leu	Val	Val	Gly	Ala	Gly	Gly	Biniossek et al., 2011
SUMO-activating enzyme subunit 2	Q9UBT2	428-453	Peptide-Ala445+Ser-Peptide	N	MS	Tyr	Val	Cys	Ala	Ser	Lys	Pro	Glu	Biniossek et al., 2011
SUMO-activating enzyme subunit 2	Q9UBT2	428-453	Peptide-Cys444+Ala-Peptide	N	MS	Cys	Tyr	Val	Cys	Ala	Ser	Lys	Pro	Biniossek et al., 2011
Superoxide dismutase [Cu-Zn]	P00441	38-70	Peptide-Ser60+Ala-Peptide	N	MS	Gly	Cys	Thr	Ser	Ala	Gly	Pro	His	Biniossek et al., 2011
Superoxide dismutase [Cu-Zn]	P00441	38-47	Peptide-Thr40+Glu-Peptide	N	MS	-	Gly	Leu	Thr	Glu	Gly	Leu	His	Biniossek et al., 2011
Superoxide dismutase [Cu-Zn]	P00441	93-116	Peptide-Ser108+Gly-Peptide	N	MS	Ile	Ser	Leu	Ser	Gly	Asp	His	Cys	Biniossek et al., 2011
Superoxide dismutase [Cu-Zn]	P00441	38-59	Peptide-His44+Gly-Peptide	N	MS	Glu	Gly	Leu	His	Gly	Phe	His	Val	Biniossek et al., 2011
Superoxide dismutase [Cu-Zn]	P00441	11-24	Peptide-Gln16+Gly-Peptide	N	MS	Gly	Pro	Val	Gln	Gly	Ile	Ile	Asn	Biniossek et al., 2011
Superoxide dismutase [Cu-Zn]	P00441	93-116	Peptide-Ser106+Leu-Peptide	N	MS	Ser	Val	Ile	Ser	Leu	Ser	Gly	Asp	Biniossek et al., 2011
Superoxide dismutase [Cu-Zn]	P00441	38-70	Peptide-Thr59+Ser-Peptide	N	MS	Ala	Gly	Cys	Thr	Ser	Ala	Gly	Pro	Biniossek et al., 2011
Superoxide dismutase [Cu-Zn]	P00441	93-116	Peptide-Leu107+Ser-Peptide	N	MS	Val	Ile	Ser	Leu	Ser	Gly	Asp	His	Biniossek et al., 2011
Superoxide dismutase [Mn], mitochondrial	P04179		peptide-Lys89+Phe-peptide	N	MS	Pro	Ala	Leu	Lys	Phe	Asn	Gly	Gly	Vidmar et al., 2017
Superoxide dismutase [Mn], mitochondrial	P04179		peptide-Gln24+Lys-peptide	N	MS	Gly	Ser	Arg	Gln	Lys	His	Ser	Leu	Vidmar et al., 2017
Survival of motor neuron-related-splicing factor 30	O75940	48-74	Peptide-Ala65+Ser-Peptide	N	MS	Asp	Ser	Phe	Ala	Ser	Thr	Gln	Pro	Biniossek et al., 2011
Synaptic vesicle membrane protein VAT-1 homolog	Q99536		peptide-Tyr100+Asp-peptide	N	MS	Gln	Gly	Leu	Tyr	Asp	Arg	Leu	Pro	Vidmar et al., 2017
Synaptic vesicle membrane protein VAT-1 homolog	Q99536		peptide-Asp101+Arg-peptide	N	MS	Gly	Leu	Tyr	Asp	Arg	Leu	Pro	Pro	Vidmar et al., 2017
T-complex protein 1 subunit alpha	P17987	444-466	Peptide-Asn455+Ala-Peptide	N	MS	Leu	Ala	Val	Asn	Ala	Ala	Gln	Asp	Biniossek et al., 2011
T-complex protein 1 subunit alpha	P17987	485-496	Trp-IIe-Gly487+Leu-Peptide	N	MS	-	Trp	Ile	Gly	Leu	Asp	Leu	Ser	Biniossek et al., 2011
T-complex protein 1 subunit alpha	P17987	469-481	Ala-Phe-His471+Asn-Peptide	N	MS	-	Ala	Phe	His	Asn	Glu	Ala	Gln	Biniossek et al., 2011
T-complex protein 1 subunit alpha	P17987	322-355	Peptide-Gly346+Gln-Peptide	N	MS	Ala	Met	Leu	Gly	Gln	Ala	Glu	Glu	Biniossek et al., 2011
T-complex protein 1 subunit beta	P78371	237-250	IIe-Leu-IIe-Ala240+Asn-Peptide	N	MS	Ile	Leu	Ile	Ala	Asn	Thr	Gly	Met	Biniossek et al., 2011
T-complex protein 1 subunit beta	P78371	139-154	Peptide-Ser143+Ser-Peptide	N	MS	Ala	Leu	Leu	Ser	Ser	Ala	Val	Asp	Biniossek et al., 2011
T-complex protein 1 subunit beta	P78371	139-154	Glu-Ala-Leu-Leu142+Ser-Peptide	N	MS	Glu	Ala	Leu	Leu	Ser	Ser	Ala	Val	Biniossek et al., 2011
T-complex protein 1 subunit beta	P78371	323-342	Peptide-Ala332+Ser-Peptide	N	MS	Gly	Glu	Ile	Ala	Ser	Thr	Phe	Asp	Biniossek et al., 2011
T-complex protein 1 subunit beta	P78371		peptide-Thr27+Ser-peptide	N	MS	Ala	Arg	Leu	Thr	Ser	Phe	Ile	Gly	Vidmar et al., 2017
T-complex protein 1 subunit beta	P78371		peptide-Ser5+Leu-peptide	N	MS	Ala	Ser	Leu	Ser	Leu	Ala	Pro	Val	Vidmar et al., 2017
T-complex protein 1 subunit beta	P78371		peptide-Arg111+Glu-peptide	N	MS	Glu	Leu	Leu	Arg	Glu	Ala	Glu	Ser	Vidmar et al., 2017
T-complex protein 1 subunit beta	P78371		peptide-Met62+Val-peptide	N	MS	Ala	Ser	Leu	Met	Val	Thr	Asn	Asp	Vidmar et al., 2017
T-complex protein 1 subunit beta	P78371		peptide-Met310+Ala-peptide	N	MS	Ala	Gly	Val	Met	Ala	Ile	Glu	His	Vidmar et al., 2017
T-complex protein 1 subunit beta	P78371		peptide-Lys13+Ala-peptide	N	MS	Asn	Ile	Phe	Lys	Ala	Gly	Ala	Asp	Vidmar et al., 2017
T-complex protein 1 subunit beta	P78371		peptide-Leu505+Ser-peptide	N	MS	Gln	Val	Leu	Leu	Ser	Ala	Ala	Glu	Vidmar et al., 2017
T-complex protein 1 subunit delta	P50991		peptide-Gly10+Ala-peptide	N	MS	Pro	Arg	Ser	Gly	Ala	Thr	Ala	Gly	Vidmar et al., 2017
T-complex protein 1 subunit delta	P50991		peptide-Asn165+Ser-peptide	N	MS	Thr	Leu	Leu	Asn	Ser	Ala	Thr	Thr	Vidmar et al., 2017
T-complex protein 1 subunit delta	P50991		peptide-Glu156+Leu-peptide	N	MS	Arg	Pro	Val	Glu	Leu	Ser	Asp	Arg	Vidmar et al., 2017
T-complex protein 1 subunit delta	P50991		peptide-Arg306+Asp-peptide	N	MS	Ser	Ile	Leu	Arg	Asp	Ala	Leu	Ser	Vidmar et al., 2017
T-complex protein 1 subunit delta	P50991		peptide-Thr69+Ile-peptide	N	MS	Gly	Asp	Val	Thr	Ile	Thr	Asn	Asp	Vidmar et al., 2017
T-complex protein 1 subunit delta	P50991		peptide-Arg496+Lys-peptide	N	MS	Ile	Asn	Val	Arg	Lys	Gly	Gly	Ile	Vidmar et al., 2017
T-complex protein 1 subunit epsilon	P48643	248-261	Peptide-Thr252+Cys-Peptide	N	MS	Ala	Ile	Leu	Thr	Cys	Pro	Phe	Glu	Biniossek et al., 2011
T-complex protein 1 subunit epsilon	P48643	65-89	Peptide-Met81+Asp-Peptide	N	MS	Leu	Ser	Met	Met	Asp	Val	Asp	His	Biniossek et al., 2011
T-complex protein 1 subunit eta	Q99832		peptide-Arg375+Gly-peptide	N	MS	Phe	Ile	Leu	Arg	Gly	Gly	Ala	Glu	Vidmar et al., 2017
T-complex protein 1 subunit gamma	P49368	267-294	Peptide-Gln284+Leu-Peptide	N	MS	Asp	Ile	Ile	Gln	Leu	Lys	Pro	Asp	Biniossek et al., 2011
T-complex protein 1 subunit theta	P50990		peptide-Lys459+Ala-peptide	N	MS	Ser	Gly	Val	Lys	Ala	Asn	Glu	Val	Vidmar et al., 2017
T-complex protein 1 subunit theta	P50990		peptide-Arg155+Asp-peptide	N	MS	Lys	Asn	Leu	Arg	Asp	Ile	Asp	Glu	Vidmar et al., 2017
T-complex protein 11-like protein 1	Q9NUJ3	18-37	Peptide-Leu25+Glu-Peptide	N	MS	Glu	Glu	Gly	Leu	Glu	Asp	Ala	Val	Biniossek et al., 2011
Talin-1	Q9Y490	235-254	Peptide-Gln246+Phe-Peptide	N	MS	Cys	Gln	Ile	Gln	Phe	Gly	Pro	His	Biniossek et al., 2011
Talin-1	Q9Y490		peptide-Gln2457+Ala-peptide	N	MS	Lys	Arg	Leu	Gln	Ala	Ala	Gly	Asn	Vidmar et al., 2017
Talin-1	Q9Y490		peptide-Glu421+Asp-peptide	N	MS	Thr	Met	Leu	Glu	Asp	Ser	Val	Ser	Vidmar et al., 2017
Talin-1	Q9Y490		peptide-Ala1717+Asn-peptide	N	MS	Glu	Pro	Leu	Ala	Asn	Ala	Ala	Arg	Vidmar et al., 2017
Talin-1	Q9Y490		peptide-Ala1289+Gly-peptide	N	MS	Val	Glu	Met	Ala	Gly	Gln	Ala	Pro	Vidmar et al., 2017
Talin-1	Q9Y490		peptide-Gln1707+Glu-peptide	N	MS	Thr	Ala	Val	Gln	Glu	Ile	Ser	His	Vidmar et al., 2017
Talin-1	Q9Y490		peptide-Ala676+Ser-peptide	N	MS	Lys	Ala	Val	Ala	Ser	Ala	Ala	Ala	Vidmar et al., 2017
Talin-1	Q9Y490		peptide-Phe2160+Cys-peptide	N	MS	Leu	Ala	Val	Phe	Cys	Ser	Pro	Glu	Vidmar et al., 2017
Talin-1	Q9Y490		peptide-Glu63+Ala-peptide	N	MS	Ile	Trp	Leu	Glu	Ala	Gly	Lys	Ala	Vidmar et al., 2017
Talin-1	Q9Y490		peptide-Ala616+Gly-peptide	N	MS	Lys	Gly	Leu	Ala	Gly	Ala	Val	Ser	Vidmar et al., 2017
Talin-1	Q9Y490		peptide-Gln1527+Ser-peptide	N	MS	Gln	Phe	Val	Gln	Ser	Ala	Lys	Glu	Vidmar et al., 2017
Talin-1	Q9Y490		peptide-Lys2361+Ala-peptide	N	MS	Ala	Leu	Val	Lys	Ala	Ala	Ser	Ala	Vidmar et al., 2017
Talin-1	Q9Y490		peptide-Arg624+Ser-peptide	N	MS	Glu	Leu	Leu	Arg	Ser	Ala	Gln	Pro	Vidmar et al., 2017
Talin-1	Q9Y490		peptide-Ser1582+Ser-peptide	N	MS	Pro	Glu	Phe	Ser	Ser	Ile	Pro	Ala	Vidmar et al., 2017
Talin-1	Q9Y490		peptide-Ala1906+Ala-peptide	N	MS	Ala	Ala	Val	Ala	Ala	Glu	Asn	Glu	Vidmar et al., 2017
Talin-1	Q9Y490		peptide-Ser752+Ala-peptide	N	MS	Gly	Cys	Val	Ser	Ala	Ser	Gln	Ala	Vidmar et al., 2017
TAR DNA-binding protein 43	Q13148	294-301	Peptide-Leu340+Ala-Peptide	N	MS	Met	Gly	Met	Leu	Ala	Ser	Gln	Gln	Biniossek et al., 2011
TAR DNA-binding protein 43	Q13148	294-361	Peptide-Ala341+Ser-Peptide	N	MS	Gly	Met	Leu	Ala	Ser	Gln	Gln	Asn	Biniossek et al., 2011
TATA-binding protein-associated factor 2N	Q92804	374-388	Asn-Ser-Cys-Asn377+Gln-Peptide	N	MS	Asn	Ser	Cys	Asn	Gln	Cys	Asn	Glu	Biniossek et al., 2011
Tetratricopeptide repeat protein 1	Q99614	47-82	Peptide-Glu71+Glu-Peptide	N	MS	Ala	Ser	Phe	Glu	Glu	Glu	Pro	Gly	Biniossek et al., 2011
Thimet oligopeptidase	P52888	80-92	Asn-IIe-Leu82+Asp-Peptide	N	MS	-	Asn	Ile	Leu	Asp	Phe	Pro	Gln	Biniossek et al., 2011
Thioredoxin domain-containing protein 5	Q8NBS9		peptide-Ser409+Glu-peptide	N	MS	Lys	Lys	Val	Ser	Glu	His	Ser	Gly	Vidmar et al., 2017
Thioredoxin domain-containing protein 5	Q8NBS9		peptide-Lys140+Leu-peptide	N	MS	Pro	Thr	Leu	Lys	Leu	Phe	Lys	Pro	Vidmar et al., 2017
Thioredoxin domain-containing protein 5	Q8NBS9		peptide-Lys354+Thr-peptide	N	MS	Gly	His	Cys	Lys	Thr	Leu	Ala	Pro	Vidmar et al., 2017
Thioredoxin domain-containing protein 5	Q8NBS9		peptide-Lys375+Ile-peptide	N	MS	Ala	Gly	Val	Lys	Ile	Ala	Glu	Val	Vidmar et al., 2017
Thioredoxin domain-containing protein 5	Q8NBS9		peptide-Lys150+Tyr-peptide	N	MS	Glu	Ala	Val	Lys	Tyr	Gln	Gly	Pro	Vidmar et al., 2017
Thioredoxin domain-containing protein 5	Q8NBS9		peptide-Arg269+Asp-peptide	N	MS	Leu	Trp	Phe	Arg	Asp	Gly	Lys	Lys	Vidmar et al., 2017
Thioredoxin-dependent peroxide reductase, mitochondrial	P30048		peptide-Glu223+Thr-peptide	N	MS	Gln	Tyr	Val	Glu	Thr	His	Gly	Glu	Vidmar et al., 2017
Thioredoxin-dependent peroxide reductase, mitochondrial	P30048		peptide-Arg184+Gly-peptide	N	MS	Leu	Ala	Leu	Arg	Gly	Leu	Phe	Ile	Vidmar et al., 2017
Thioredoxin-dependent peroxide reductase, mitochondrial	P30048		peptide-Ala114+Phe-peptide	N	MS	Glu	Ile	Val	Ala	Phe	Ser	Asp	Lys	Vidmar et al., 2017
Thioredoxin-like protein 1	O43396		peptide-Asn199+Leu-peptide	N	MS	Ile	Phe	Ile	Asn	Leu	Pro	Arg	Ser	Vidmar et al., 2017
THO complex subunit 4	Q86V81	87-107	Peptide-Gly97+Gly-Peptide	N	MS	Ser	Gly	Phe	Gly	Gly	Gly	Ala	Gly	Biniossek et al., 2011
THO complex subunit 4	Q86V81	87-107	Peptide-Asp93+Ser-Peptide	N	MS	Asp	Leu	Phe	Asp	Ser	Gly	Phe	Gly	Biniossek et al., 2011
THO complex subunit 4	Q86V81	145-155	Ser-Leu-Gly147+Thr-Peptide	N	MS	-	Ser	Leu	Gly	Thr	Ala	Asp	Val	Biniossek et al., 2011
THO complex subunit 4	Q86V81		peptide-Ser78+Arg-peptide	N	MS	Ala	Pro	Tyr	Ser	Arg	Pro	Lys	Gln	Vidmar et al., 2017
Threonine--tRNA ligase, cytoplasmic	P26639	530-543	Peptide-Asn533+Ser-Peptide	N	MS	Trp	Glu	Leu	Asn	Ser	Gly	Asp	Gly	Biniossek et al., 2011
Tight junction protein ZO-2	Q9UDY2		peptide-Lys460+Ser-peptide	N	MS	Thr	Pro	Phe	Lys	Ser	Thr	Gly	Asp	Vidmar et al., 2017
Tissue factor	P13726		peptide-Phe82+Tyr-peptide	N	MS	Ser	Lys	Cys	Phe	Tyr	Thr	Thr	Asp	Vidmar et al., 2017
Tissue factor	P13726		peptide-Arg176+Asp-peptide	N	MS	Leu	Ser	Leu	Arg	Asp	Val	Phe	Gly	Vidmar et al., 2017
Tissue factor	P13726		peptide-Gly283+Gln-peptide	N	MS	Ala	Gly	Val	Gly	Gln	Ser	Trp	Lys	Vidmar et al., 2017
Transaldolase	P37837		peptide-Ser309+Asp-peptide	N	MS	Glu	Lys	Leu	Ser	Asp	Gly	Ile	Arg	Vidmar et al., 2017
Transaldolase	P37837		peptide-Gly73+Gly-peptide	N	MS	Arg	Lys	Leu	Gly	Gly	Ser	Gln	Glu	Vidmar et al., 2017
Transcription elongation factor A protein-like 4	Q96EI5	91-111	Peptide-Glu97+Gly-Peptide	N	MS	Pro	Glu	Ile	Glu	Gly	Lys	Pro	Glu	Biniossek et al., 2011
Transcription elongation factor B polypeptide 1	Q15369	21-32	Leu-IIe-Ser23+Ser-Peptide	N	MS	-	Leu	Ile	Ser	Ser	Asp	Gly	His	Biniossek et al., 2011
Transcription elongation factor B polypeptide 2	Q15370	81-118	Peptide-Met103+Lys-Peptide	N	MS	Pro	Asp	Val	Met	Lys	Pro	Gln	Asp	Biniossek et al., 2011
Transcription elongation factor SPT6	Q7KZ85	267-290	Peptide-Glu278+Ser-Peptide	N	MS	Ser	Glu	Leu	Glu	Ser	Ser	His	Leu	Biniossek et al., 2011
Transcription factor BTF3	P20290		peptide-Thr110+Asn-peptide	N	MS	Asn	Met	Phe	Thr	Asn	Gln	Gly	Thr	Vidmar et al., 2017
Transcription factor BTF3	P20290		peptide-Ile49+Met-peptide	N	MS	Lys	Glu	Thr	Ile	Met	Asn	Gln	Glu	Vidmar et al., 2017
Transcription intermediary factor 1-beta	Q13263	435-469	Peptide-Ser459+Ser-Peptide	N	MS	Asp	Pro	Tyr	Ser	Ser	Ala	Glu	Pro	Biniossek et al., 2011
Transcription intermediary factor 1-beta	Q13263	2-32	Peptide-Gly18+Ser-Peptide	N	MS	Ala	Ala	Ser	Gly	Ser	Pro	Gly	Pro	Biniossek et al., 2011
Transcription intermediary factor 1-beta	Q13263	751-767	Peptide-Ser756+Ser-Peptide	N	MS	Pro	Pro	Tyr	Ser	Ser	Pro	Gln	Glu	Biniossek et al., 2011
Transcription intermediary factor 1-beta	Q13263		peptide-Ala582+Glu-peptide	N	MS	Met	Ala	Leu	Ala	Glu	Gly	Pro	Gly	Vidmar et al., 2017
Transcription intermediary factor 1-beta	Q13263		peptide-Lys695+Leu-peptide	N	MS	Val	Val	Ala	Lys	Leu	Ser	Pro	Ala	Vidmar et al., 2017
Transducin-like enhancer protein 1	Q04724	113-180	Peptide-Ser172+Gly-Peptide	N	MS	Ser	Ala	Leu	Ser	Gly	Gln	Ser	His	Biniossek et al., 2011
Transforming protein RhoA	P61586		peptide-Phe39+Glu-peptide	N	MS	Pro	Thr	Val	Phe	Glu	Asn	Tyr	Val	Vidmar et al., 2017
Transforming protein RhoA	P61586		peptide-Leu22+Ile-peptide	N	MS	Thr	Cys	Leu	Leu	Ile	Val	Phe	Ser	Vidmar et al., 2017
Transforming protein RhoA	P61586		peptide-Lys104+His-peptide	N	MS	Pro	Glu	Val	Lys	His	Phe	Cys	Pro	Vidmar et al., 2017
Transforming protein RhoA	P61586		peptide-Gly12+Asp-peptide	N	MS	Val	Ile	Val	Gly	Asp	Gly	Ala	Cys	Vidmar et al., 2017
Transforming protein RhoA	P61586		peptide-Glu93+Asn-peptide	N	MS	Asp	Ser	Leu	Glu	Asn	Ile	Pro	Glu	Vidmar et al., 2017
Transforming protein RhoA	P61586		peptide-Lys135+Gln-peptide	N	MS	Ala	Lys	Met	Lys	Gln	Glu	Pro	Val	Vidmar et al., 2017
Transforming protein RhoA	P61586		peptide-Phe25+Ser-peptide	N	MS	Leu	Ile	Val	Phe	Ser	Lys	Asp	Gln	Vidmar et al., 2017
Transforming protein RhoA	P61586		peptide-Trp58+Asp-peptide	N	MS	Leu	Ala	Leu	Trp	Asp	Thr	Ala	Gly	Vidmar et al., 2017
Transforming protein RhoA	P61586		peptide-Asp59+Thr-peptide	N	MS	Ala	Leu	Trp	Asp	Thr	Ala	Gly	Gln	Vidmar et al., 2017
Transforming protein RhoA	P61586		peptide-Ala56+Leu-peptide	N	MS	Val	Glu	Leu	Ala	Leu	Trp	Asp	Thr	Vidmar et al., 2017
Transgelin-2	P37802	58-78	Peptide-Asn67+Ala-Peptide	N	MS	Glu	Leu	Ile	Asn	Ala	Leu	Tyr	Pro	Biniossek et al., 2011
Transgelin-2	P37802	140-153	Peptide-Phe144+Ser-Peptide	N	MS	Asp	Gly	Leu	Phe	Ser	Gly	Asp	Pro	Biniossek et al., 2011
Transgelin-2	P37802		peptide-Glu19+Lys-peptide	N	MS	Gln	Lys	Ile	Glu	Lys	Gln	Tyr	Asp	Vidmar et al., 2017
Transgelin-2	P37802		peptide-Gln15+Gln-peptide	N	MS	Arg	Glu	Val	Gln	Gln	Lys	Ile	Glu	Vidmar et al., 2017
Transgelin-2	P37802		peptide-Gly43+Arg-peptide	N	MS	Lys	Asp	Val	Gly	Arg	Pro	Gln	Pro	Vidmar et al., 2017
Transgelin-2	P37802		peptide-Ala136+Val-peptide	N	MS	Gly	Gly	Leu	Ala	Val	Ala	Arg	Asp	Vidmar et al., 2017
Transgelin-2	P37802		peptide-Gln177+Met-peptide	N	MS	Ile	Gly	Leu	Gln	Met	Gly	Thr	Asn	Vidmar et al., 2017
Transgelin-2	P37802		peptide-Gln168+Glu-peptide	N	MS	Asn	Gln	Leu	Gln	Glu	Gly	Lys	Asn	Vidmar et al., 2017
Transgelin-2	P37802		peptide-Lys156+Glu-peptide	N	MS	Lys	Lys	Ser	Lys	Glu	Asn	Pro	Arg	Vidmar et al., 2017
Transitional endoplasmic reticulum ATPase	P55072	678-693	Peptide-Ser683+Gly-Peptide	N	MS	Asn	Gly	Phe	Ser	Gly	Ala	Asp	Leu	Biniossek et al., 2011
Transitional endoplasmic reticulum ATPase	P55072	390-408	Peptide-Glu397+Gln-Peptide	N	MS	Val	Asp	Leu	Glu	Gln	Val	Ala	Asn	Biniossek et al., 2011
Transketolase	P29401	24-42	Peptide-Thr31+Ala-Peptide	N	MS	Gln	Ala	Thr	Thr	Ala	Ala	Gly	Ser	Biniossek et al., 2011
Transketolase	P29401	24-42	Peptide-Gln28+Ala-Peptide	N	MS	Ser	Ser	Ile	Gln	Ala	Thr	Thr	Ala	Biniossek et al., 2011
Translation initiation factor eIF-2B subunit alpha	Q14232	238-251	Peptide-Asn242+Gln-Peptide	N	MS	Phe	Pro	Leu	Asn	Gln	Gln	Asp	Val	Biniossek et al., 2011
Translational activator GCN1	Q92616	1531-1542	Gln-Leu-Ser1533+Ser-Peptide	N	MS	-	Gln	Leu	Ser	Ser	Cys	Leu	Pro	Biniossek et al., 2011
Translationally-controlled tumor protein	P13693		peptide-Ala147+Leu-peptide	N	MS	Gly	Met	Val	Ala	Leu	Leu	Asp	Tyr	Vidmar et al., 2017
Translationally-controlled tumor protein	P13693		peptide-Met115+Thr-peptide	N	MS	Lys	Pro	Phe	Met	Thr	Gly	Ala	Ala	Vidmar et al., 2017
Translationally-controlled tumor protein	P13693		peptide-Arg5+Asp-peptide	N	MS	Ile	Ile	Tyr	Arg	Asp	Leu	Ile	Ser	Vidmar et al., 2017
Translationally-controlled tumor protein	P13693		peptide-Leu149+Asp-peptide	N	MS	Val	Ala	Leu	Leu	Asp	Tyr	Arg	Glu	Vidmar et al., 2017
Translationally-controlled tumor protein	P13693		peptide-Thr116+Gly-peptide	N	MS	Pro	Phe	Met	Thr	Gly	Ala	Ala	Glu	Vidmar et al., 2017
Translocon-associated protein subunit alpha	P43307		peptide-Lys91+Gly-peptide	N	MS	Leu	Phe	Val	Lys	Gly	Glu	Asp	Phe	Vidmar et al., 2017
Transmembrane emp24 domain-containing protein 4	Q7Z7H5		peptide-Glu44+Glu-peptide	N	MS	Cys	Phe	Ile	Glu	Glu	Ile	Pro	Asp	Vidmar et al., 2017
Transportin-1	Q92973	647-673	Peptide-Gly664+Gly-Peptide	N	MS	Glu	Gly	Leu	Gly	Gly	Asn	Ile	Glu	Biniossek et al., 2011
Treacle protein	Q13428	487-502	Peptide-Asn493+Ala-Peptide	N	MS	Ala	Ala	Met	Asn	Ala	Ala	Gln	Val	Biniossek et al., 2011
Trifunctional purine biosynthetic protein adenosine-3	P22102	130-148	Peptide-Ser139+Ala-Peptide	N	MS	Phe	Ile	Leu	Ser	Ala	Asp	Phe	Pro	Biniossek et al., 2011
Trifunctional purine biosynthetic protein adenosine-3	P22102	712-729	Peptide-Gln717+Gln-Peptide	N	MS	Ser	Trp	Leu	Gln	Gln	Glu	Gly	His	Biniossek et al., 2011
Triosephosphate isomerase	P60174	180-193	Peptide-Phe182+Glu-Peptide	N	MS	-	Val	Val	Phe	Glu	Gln	Thr	Lys	Biniossek et al., 2011
Triosephosphate isomerase	P60174	138-150	His-Val-Phe-Gly141+Glu-Peptide	N	MS	His	Val	Phe	Gly	Glu	Ser	Asp	Glu	Biniossek et al., 2011
Triosephosphate isomerase	P60174		peptide-Gly166+Glu-peptide	N	MS	Ala	Cys	Ile	Gly	Glu	Lys	Leu	Asp	Vidmar et al., 2017
Triosephosphate isomerase	P60174		peptide-Asn67+Ala-peptide	N	MS	Gly	Thr	Leu	Asn	Ala	Ala	Lys	Val	Vidmar et al., 2017
Triosephosphate isomerase	P60174		peptide-Gly270+Gly-peptide	N	MS	Phe	Leu	Val	Gly	Gly	Ala	Ser	Leu	Vidmar et al., 2017
Triosephosphate isomerase	P60174		peptide-Trp206+Ala-peptide	N	MS	Glu	Pro	Val	Trp	Ala	Ile	Gly	Thr	Vidmar et al., 2017
Triosephosphate isomerase	P60174		peptide-Ser273+Leu-peptide	N	MS	Gly	Gly	Ala	Ser	Leu	Lys	Pro	Glu	Vidmar et al., 2017
Triosephosphate isomerase	P60174		peptide-Thr83+Ala-peptide	N	MS	Ala	Pro	Pro	Thr	Ala	Tyr	Ile	Asp	Vidmar et al., 2017
Triosephosphate isomerase	P60174		peptide-Ala239+Gln-peptide	N	MS	Asp	Ala	Val	Ala	Gln	Ser	Thr	Arg	Vidmar et al., 2017
Triosephosphate isomerase	P60174		peptide-Cys79+Ala-peptide	N	MS	Glu	Val	Val	Cys	Ala	Pro	Pro	Thr	Vidmar et al., 2017
tRNA (cytosine(34)-C(5))-methyltransferase	Q08J23	10-28	Leu-Gln11+Gln-Peptide	N	MS	-	-	Leu	Gln	Gln	Gln	Gln	Arg	Biniossek et al., 2011
tRNA (cytosine(34)-C(5))-methyltransferase	Q08J23	10-28	Leu-Gln-Gln12+Gln-Peptide	N	MS	-	Leu	Gln	Gln	Gln	Gln	Arg	Pro	Biniossek et al., 2011
tRNA-splicing ligase RtcB homolog	Q9Y3I0	68-81	Peptide-Ala73+Ala-Peptide	N	MS	Gly	Asn	Val	Ala	Ala	Leu	Pro	Gly	Biniossek et al., 2011
Tropomodulin-3	Q9NYL9		peptide-Glu33+Thr-peptide	N	MS	Lys	Gln	Leu	Glu	Thr	Val	Leu	Asp	Vidmar et al., 2017
Tropomyosin alpha-4 chain	P67936		peptide-Gln18+Gln-peptide	N	MS	Gln	Ala	Leu	Gln	Gln	Gln	Ala	Asp	Vidmar et al., 2017
Tropomyosin alpha-4 chain	P67936		peptide-Lys153+Cys-peptide	N	MS	Ser	Glu	Leu	Lys	Cys	Gly	Asp	Leu	Vidmar et al., 2017
Tropomyosin alpha-4 chain	P67936		peptide-Glu172+Ala-peptide	N	MS	Lys	Ser	Leu	Glu	Ala	Ala	Ser	Glu	Vidmar et al., 2017
Tropomyosin alpha-4 chain	P67936		peptide-Glu214+Lys-peptide	N	MS	Ala	Lys	Leu	Glu	Lys	Thr	Ile	Asp	Vidmar et al., 2017
Tropomyosin alpha-4 chain	P67936		peptide-Lys197+Glu-peptide	N	MS	Asp	Lys	Leu	Lys	Glu	Ala	Glu	Thr	Vidmar et al., 2017
Trypsin-1	P07477	179-206	Peptide-Leu189+Glu-Peptide	N	MS	Val	Gly	Phe	Leu	Glu	Gly	Gly	Lys	Biniossek et al., 2011
Trypsin-1	P07477	103-112	Thr103+Leu-Peptide	N	MS	-	-	-	Thr	Leu	Asn	Asn	Asp	Biniossek et al., 2011
Tubulin alpha chain-like 3	A6NHL2	319-333	Peptide-Leu325+Tyr-Peptide	N	MS	Cys	Cys	Leu	Leu	Tyr	Arg	Gly	Asp	Biniossek et al., 2011
Tubulin alpha-1B chain	P68363		peptide-Glu27+His-peptide	N	MS	Tyr	Cys	Leu	Glu	His	Gly	Ile	Gln	Vidmar et al., 2017
Tubulin alpha-1B chain	P68363		peptide-Thr109+Ile-peptide	N	MS	Gly	His	Tyr	Thr	Ile	Gly	Lys	Glu	Vidmar et al., 2017
Tubulin alpha-1B chain	P68363		peptide-Tyr357+Gln-peptide	N	MS	Gly	Ile	Asn	Tyr	Gln	Pro	Pro	Thr	Vidmar et al., 2017
Tubulin alpha-1B chain	P68363		peptide-Asn50+Thr-peptide	N	MS	Asp	Ser	Phe	Asn	Thr	Phe	Phe	Ser	Vidmar et al., 2017
Tubulin alpha-1B chain	P68363		peptide-Leu86+Phe-peptide	N	MS	Tyr	Arg	Gln	Leu	Phe	His	Pro	Glu	Vidmar et al., 2017
Tubulin alpha-1B chain	P68363		peptide-Arg79+Thr-peptide	N	MS	Asp	Glu	Val	Arg	Thr	Gly	Thr	Tyr	Vidmar et al., 2017
Tubulin alpha-1B chain	P68363		peptide-Asn249+Val-peptide	N	MS	Gly	Ala	Leu	Asn	Val	Asp	Leu	Thr	Vidmar et al., 2017
Tubulin alpha-1B chain	P68363		peptide-Lys352+Val-peptide	N	MS	Thr	Gly	Phe	Lys	Val	Gly	Ile	Asn	Vidmar et al., 2017
Tubulin alpha-1B chain	P68363		peptide-Leu26+Glu-peptide	N	MS	Leu	Tyr	Cys	Leu	Glu	His	Gly	Ile	Vidmar et al., 2017
Tubulin alpha-1B chain	P68363		peptide-Ser277+Ala-peptide	N	MS	Pro	Val	Ile	Ser	Ala	Glu	Lys	Ala	Vidmar et al., 2017
Tubulin alpha-1B chain	P68363		peptide-Glu168+Phe-peptide	N	MS	Ser	Lys	Leu	Glu	Phe	Ser	Ile	Tyr	Vidmar et al., 2017
Tubulin alpha-1B chain	P68363		peptide-Ile276+Ser-peptide	N	MS	Ala	Pro	Val	Ile	Ser	Ala	Glu	Lys	Vidmar et al., 2017
Tubulin alpha-1B chain	P68363		peptide-Leu318+Tyr-peptide	N	MS	Cys	Cys	Leu	Leu	Tyr	Arg	Gly	Asp	Vidmar et al., 2017
Tubulin alpha-1B chain	P68363		peptide-Asp69+Leu-peptide	N	MS	Val	Phe	Val	Asp	Leu	Glu	Pro	Thr	Vidmar et al., 2017
Tubulin alpha-1B chain	P68363		peptide-Gly354+Ile-peptide	N	MS	Phe	Lys	Val	Gly	Ile	Asn	Tyr	Gln	Vidmar et al., 2017
Tubulin alpha-1B chain	P68363		peptide-Asp251+Leu-peptide	N	MS	Leu	Asn	Val	Asp	Leu	Thr	Glu	Phe	Vidmar et al., 2017
Tubulin alpha-1B chain	P68363		peptide-Ser158+Val-peptide	N	MS	Glu	Arg	Leu	Ser	Val	Asp	Tyr	Gly	Vidmar et al., 2017
Tubulin alpha-1B chain	P68363		peptide-Asn356+Tyr-peptide	N	MS	Val	Gly	Ile	Asn	Tyr	Gln	Pro	Pro	Vidmar et al., 2017
Tubulin alpha-1B chain	P68363		peptide-Glu429+Lys-peptide	N	MS	Ala	Ala	Leu	Glu	Lys	Asp	Tyr	Glu	Vidmar et al., 2017
Tubulin alpha-1B chain	P68363		peptide-Asn293+Ala-peptide	N	MS	Glu	Ile	Thr	Asn	Ala	Cys	Phe	Glu	Vidmar et al., 2017
Tubulin alpha-1B chain	P68363		peptide-Gly111+Lys-peptide	N	MS	Tyr	Thr	Ile	Gly	Lys	Glu	Ile	Ile	Vidmar et al., 2017
Tubulin alpha-1B chain	P68363		peptide-Lys304+Cys-peptide	N	MS	Gln	Met	Val	Lys	Cys	Asp	Pro	Arg	Vidmar et al., 2017
Tubulin alpha-1B chain	P68363		peptide-Gln342+Phe-peptide	N	MS	Arg	Ser	Ile	Gln	Phe	Val	Asp	Trp	Vidmar et al., 2017
Tubulin alpha-1B chain	P68363		peptide-Ala270+Thr-peptide	N	MS	Phe	Pro	Leu	Ala	Thr	Tyr	Ala	Pro	Vidmar et al., 2017
Tubulin alpha-1B chain	P68363		peptide-Thr271+Tyr-peptide	N	MS	Pro	Leu	Ala	Thr	Tyr	Ala	Pro	Val	Vidmar et al., 2017
Tubulin alpha-1B chain	P68363		peptide-Met203+Val-peptide	N	MS	Cys	Ala	Phe	Met	Val	Asp	Asn	Glu	Vidmar et al., 2017
Tubulin alpha-1B chain	P68363		peptide-Tyr319+Arg-peptide	N	MS	Cys	Leu	Leu	Tyr	Arg	Gly	Asp	Val	Vidmar et al., 2017
Tubulin alpha-1B chain	P68363		peptide-Phe296+Glu-peptide	N	MS	Asn	Ala	Cys	Phe	Glu	Pro	Ala	Asn	Vidmar et al., 2017
Tubulin alpha-1B chain	P68363		peptide-Thr361+Val-peptide	N	MS	Gln	Pro	Pro	Thr	Val	Val	Pro	Gly	Vidmar et al., 2017
Tubulin alpha-1B chain	P68363		peptide-Gly43+Gly-peptide	N	MS	Lys	Thr	Ile	Gly	Gly	Gly	Asp	Asp	Vidmar et al., 2017
Tubulin alpha-1B chain	P68363		peptide-Thr253+Glu-peptide	N	MS	Val	Asp	Leu	Thr	Glu	Phe	Gln	Thr	Vidmar et al., 2017
Tubulin alpha-1B chain	P68363		peptide-Arg390+Leu-peptide	N	MS	Ala	Trp	Ala	Arg	Leu	Asp	His	Lys	Vidmar et al., 2017
Tubulin alpha-1B chain	P68363		peptide-Arg84+Gln-peptide	N	MS	Gly	Thr	Tyr	Arg	Gln	Leu	Phe	His	Vidmar et al., 2017
Tubulin alpha-1B chain	P68363		peptide-Ser419+Glu-peptide	N	MS	Gly	Glu	Phe	Ser	Glu	Ala	Arg	Glu	Vidmar et al., 2017
Tubulin alpha-1B chain	P68363		peptide-Arg214+Arg-peptide	N	MS	Asp	Ile	Cys	Arg	Arg	Asn	Leu	Asp	Vidmar et al., 2017
Tubulin alpha-1B chain	P68363		peptide-Asn329+Ala-peptide	N	MS	Lys	Asp	Val	Asn	Ala	Ala	Ile	Ala	Vidmar et al., 2017
Tubulin alpha-1B chain	P68363		peptide-Ser178+Thr-peptide	N	MS	Pro	Gln	Val	Ser	Thr	Ala	Val	Val	Vidmar et al., 2017
Tubulin alpha-1B chain	P68363		peptide-Ser287+Val-peptide	N	MS	Glu	Gln	Leu	Ser	Val	Ala	Glu	Ile	Vidmar et al., 2017
Tubulin alpha-1B chain	P68363		peptide-Gly410+Glu-peptide	N	MS	Trp	Tyr	Val	Gly	Glu	Gly	Met	Glu	Vidmar et al., 2017
Tubulin alpha-1B chain	P68363		peptide-Ala289+Glu-peptide	N	MS	Leu	Ser	Val	Ala	Glu	Ile	Thr	Asn	Vidmar et al., 2017
Tubulin alpha-1B chain	P68363		peptide-Met154+Glu-peptide	N	MS	Ser	Leu	Leu	Met	Glu	Arg	Leu	Ser	Vidmar et al., 2017
Tubulin alpha-1B chain	P68363		peptide-Glu414+Glu-peptide	N	MS	Glu	Gly	Met	Glu	Glu	Gly	Glu	Phe	Vidmar et al., 2017
Tubulin alpha-1B chain	P68363		peptide-Ser54+Glu-peptide	N	MS	Thr	Phe	Phe	Ser	Glu	Thr	Gly	Ala	Vidmar et al., 2017
Tubulin alpha-1C chain	Q9BQE3		peptide-Ser277+Ala-peptide	N	MS	Pro	Val	Ile	Ser	Ala	Glu	Lys	Ala	Vidmar et al., 2017
Tubulin alpha-1C chain	Q9BQE3		peptide-Ala270+Thr-peptide	N	MS	Phe	Pro	Leu	Ala	Thr	Tyr	Ala	Pro	Vidmar et al., 2017
Tubulin alpha-4A chain	P68366	3-40	Peptide-Glu27+His-Peptide	N	MS	Tyr	Cys	Leu	Glu	His	Gly	Ile	Gln	Biniossek et al., 2011
Tubulin alpha-4A chain	P68366	85-96	Gln-Leu-Phe87+His-Peptide	N	MS	-	Gln	Leu	Phe	His	Pro	Glu	Gln	Biniossek et al., 2011
Tubulin alpha-4A chain	P68366	265-280	Peptide-Ala270+Thr-Peptide	N	MS	Phe	Pro	Leu	Ala	Thr	Tyr	Ala	Pro	Biniossek et al., 2011
Tubulin alpha-4A chain	P68366	353-370	Val-Gly-IIe-Asn356+Tyr-Peptide	N	MS	Val	Gly	Ile	Asn	Tyr	Gln	Pro	Pro	Biniossek et al., 2011
Tubulin beta chain	P07437	3-19	Peptide-Gln8+Ala-Peptide	N	MS	Val	His	Ile	Gln	Ala	Gly	Gln	Cys	Biniossek et al., 2011
Tubulin beta chain	P07437		peptide-Gly17+Ala-peptide	N	MS	Asn	Gln	Ile	Gly	Ala	Lys	Phe	Trp	Vidmar et al., 2017
Tubulin beta chain	P07437		peptide-Val113+Asp-peptide	N	MS	Ala	Glu	Leu	Val	Asp	Ser	Val	Leu	Vidmar et al., 2017
Tubulin beta chain	P07437		peptide-Thr366+Phe-peptide	N	MS	Met	Ala	Val	Thr	Phe	Ile	Gly	Asn	Vidmar et al., 2017
Tubulin beta chain	P07437		peptide-Ser322+Met-peptide	N	MS	Gly	Arg	Met	Ser	Met	Lys	Glu	Val	Vidmar et al., 2017
Tubulin beta chain	P07437		peptide-Leu151+Ile-peptide	N	MS	Gly	Thr	Leu	Leu	Ile	Ser	Lys	Ile	Vidmar et al., 2017
Tubulin beta chain	P07437		peptide-Ser48+Val-peptide	N	MS	Asp	Arg	Ile	Ser	Val	Tyr	Tyr	Asn	Vidmar et al., 2017
Tubulin beta chain	P07437		peptide-Thr290+Gln-peptide	N	MS	Pro	Glu	Leu	Thr	Gln	Gln	Val	Phe	Vidmar et al., 2017
Tubulin beta chain	P07437		peptide-Gly56+Gly-peptide	N	MS	Glu	Ala	Thr	Gly	Gly	Lys	Tyr	Val	Vidmar et al., 2017
Tubulin beta chain	P07437		peptide-Thr136+His-peptide	N	MS	Phe	Gln	Leu	Thr	His	Ser	Leu	Gly	Vidmar et al., 2017
Tubulin beta chain	P07437		peptide-Ala301+Ala-peptide	N	MS	Asn	Met	Met	Ala	Ala	Cys	Asp	Pro	Vidmar et al., 2017
Tubulin beta chain	P07437		peptide-Met300+Ala-peptide	N	MS	Lys	Asn	Met	Met	Ala	Ala	Cys	Asp	Vidmar et al., 2017
Tubulin beta chain	P07437		peptide-Thr312+Val-peptide	N	MS	Arg	Tyr	Leu	Thr	Val	Ala	Ala	Val	Vidmar et al., 2017
Tubulin beta chain	P07437		peptide-Ser153+Lys-peptide	N	MS	Leu	Leu	Ile	Ser	Lys	Ile	Arg	Glu	Vidmar et al., 2017
Tubulin beta chain	P07437		peptide-Leu44+Asp-peptide	N	MS	Asp	Leu	Gln	Leu	Asp	Arg	Ile	Ser	Vidmar et al., 2017
Tubulin beta chain	P07437		peptide-Met164+Asn-peptide	N	MS	Asp	Arg	Ile	Met	Asn	Thr	Phe	Ser	Vidmar et al., 2017
Tubulin beta chain	P07437		peptide-Gln83+Ile-peptide	N	MS	Pro	Phe	Gly	Gln	Ile	Phe	Arg	Pro	Vidmar et al., 2017
Tubulin beta chain	P07437		peptide-Trp21+Glu-peptide	N	MS	Ala	Lys	Phe	Trp	Glu	Val	Ile	Ser	Vidmar et al., 2017
Tubulin beta chain	P07437		peptide-Thr107+Glu-peptide	N	MS	Gly	His	Tyr	Thr	Glu	Gly	Ala	Glu	Vidmar et al., 2017
Tubulin beta chain	P07437		peptide-Arg241+Phe-peptide	N	MS	Thr	Cys	Leu	Arg	Phe	Pro	Gly	Gln	Vidmar et al., 2017
Tubulin beta chain	P07437		peptide-His264+Phe-peptide	N	MS	Pro	Arg	Leu	His	Phe	Phe	Met	Pro	Vidmar et al., 2017
Tubulin beta chain	P07437		peptide-Asn247+Ala-peptide	N	MS	Gly	Gln	Leu	Asn	Ala	Asp	Leu	Arg	Vidmar et al., 2017
Tubulin beta chain	P07437		peptide-Lys362+Met-peptide	N	MS	Arg	Gly	Leu	Lys	Met	Ala	Val	Thr	Vidmar et al., 2017
Tubulin beta chain	P07437		peptide-Arg156+Glu-peptide	N	MS	Ser	Lys	Ile	Arg	Glu	Glu	Tyr	Pro	Vidmar et al., 2017
Tubulin beta chain	P07437		peptide-Arg121+Lys-peptide	N	MS	Asp	Val	Val	Arg	Lys	Glu	Ala	Glu	Vidmar et al., 2017
Tubulin beta chain	P07437		peptide-Phe92+Gly-peptide	N	MS	Asn	Phe	Val	Phe	Gly	Gln	Ser	Gly	Vidmar et al., 2017
Tubulin beta chain	P07437		peptide-Asn332+Val-peptide	N	MS	Gln	Met	Leu	Asn	Val	Gln	Asn	Lys	Vidmar et al., 2017
Tubulin beta chain	P07437		peptide-Glu22+Val-peptide	N	MS	Lys	Phe	Trp	Glu	Val	Ile	Ser	Asp	Vidmar et al., 2017
Tubulin beta chain	P07437		peptide-Asp114+Ser-peptide	N	MS	Glu	Leu	Val	Asp	Ser	Val	Leu	Asp	Vidmar et al., 2017
Tubulin beta chain	P07437		peptide-Lys324+Glu-peptide	N	MS	Met	Ser	Met	Lys	Glu	Val	Asp	Glu	Vidmar et al., 2017
Tubulin beta chain	P07437		peptide-Asn184+Ala-peptide	N	MS	Glu	Pro	Tyr	Asn	Ala	Thr	Leu	Ser	Vidmar et al., 2017
Tubulin beta chain	P07437		peptide-Gly93+Gln-peptide	N	MS	Phe	Val	Phe	Gly	Gln	Ser	Gly	Ala	Vidmar et al., 2017
Tubulin beta chain	P07437		peptide-Ser176+Asp-peptide	N	MS	Pro	Lys	Val	Ser	Asp	Thr	Val	Val	Vidmar et al., 2017
Tubulin beta chain	P07437		peptide-Thr218+Thr-peptide	N	MS	Leu	Lys	Leu	Thr	Thr	Pro	Thr	Tyr	Vidmar et al., 2017
Tubulin beta chain	P07437		peptide-Asn256+Met-peptide	N	MS	Leu	Ala	Val	Asn	Met	Val	Pro	Phe	Vidmar et al., 2017
Tubulin beta chain	P07437		peptide-Gly82+Gln-peptide	N	MS	Gly	Pro	Phe	Gly	Gln	Ile	Phe	Arg	Vidmar et al., 2017
Tubulin beta chain	P07437		peptide-Asn52+Glu-peptide	N	MS	Val	Tyr	Tyr	Asn	Glu	Ala	Thr	Gly	Vidmar et al., 2017
Tubulin beta chain	P07437		peptide-Asp67+Leu-peptide	N	MS	Ile	Leu	Val	Asp	Leu	Glu	Pro	Gly	Vidmar et al., 2017
Tubulin beta chain	P07437		peptide-Gln334+Asn-peptide	N	MS	Leu	Asn	Val	Gln	Asn	Lys	Asn	Ser	Vidmar et al., 2017
Tubulin beta chain	P07437		peptide-Leu395+His-peptide	N	MS	Lys	Ala	Phe	Leu	His	Trp	Tyr	Thr	Vidmar et al., 2017
Tubulin beta chain	P07437		peptide-Glu194+Asn-peptide	N	MS	Gln	Leu	Val	Glu	Asn	Thr	Asp	Glu	Vidmar et al., 2017
Tubulin beta chain	P07437		peptide-Gln43+Leu-peptide	N	MS	Ser	Asp	Leu	Gln	Leu	Asp	Arg	Ile	Vidmar et al., 2017
Tubulin beta chain	P07437		peptide-Thr274+Ser-peptide	N	MS	Ala	Pro	Leu	Thr	Ser	Arg	Gly	Ser	Vidmar et al., 2017
Tubulin beta chain	P07437		peptide-Glu53+Ala-peptide	N	MS	Tyr	Tyr	Asn	Glu	Ala	Thr	Gly	Gly	Vidmar et al., 2017
Tubulin beta chain	P07437		peptide-Leu117+Asp-peptide	N	MS	Asp	Ser	Val	Leu	Asp	Val	Val	Arg	Vidmar et al., 2017
Tubulin beta chain	P07437		peptide-Tyr51+Asn-peptide	N	MS	Ser	Val	Tyr	Tyr	Asn	Glu	Ala	Thr	Vidmar et al., 2017
Tubulin beta chain	P07437		peptide-Glu111+Leu-peptide	N	MS	Glu	Gly	Ala	Glu	Leu	Val	Asp	Ser	Vidmar et al., 2017
Tubulin beta chain	P07437		peptide-Cys201+Ile-peptide	N	MS	Glu	Thr	Tyr	Cys	Ile	Asp	Asn	Glu	Vidmar et al., 2017
Tubulin beta-4A chain	P04350		peptide-Thr107+Glu-peptide	N	MS	Gly	His	Tyr	Thr	Glu	Gly	Ala	Glu	Vidmar et al., 2017
Tubulin beta-4B chain	P68371	123-152	Peptide-Gly140+Gly-Peptide	N	MS	His	Ser	Leu	Gly	Gly	Gly	Thr	Gly	Biniossek et al., 2011
Tubulin beta-4B chain	P68371	3-19	Glu-IIe-Val-His6+Leu-Peptide	N	MS	Glu	Ile	Val	His	Leu	Gln	Ala	Gly	Biniossek et al., 2011
Tubulin beta-4B chain	P68371	104-122	Peptide-Asp114+Ser-Peptide	N	MS	Glu	Leu	Val	Asp	Ser	Val	Leu	Asp	Biniossek et al., 2011
Tubulin beta-4B chain	P68371	20-43	Peptide-Ser25+Asp-Peptide	N	MS	Glu	Val	Ile	Ser	Asp	Glu	His	Gly	Biniossek et al., 2011
Tubulin beta-4B chain	P68371		peptide-Leu44+Glu-peptide	N	MS	Asp	Leu	Gln	Leu	Glu	Arg	Ile	Asn	Vidmar et al., 2017
Tubulin beta-4B chain	P68371		peptide-Thr290+Gln-peptide	N	MS	Pro	Glu	Leu	Thr	Gln	Gln	Met	Phe	Vidmar et al., 2017
Tubulin beta-4B chain	P68371		peptide-Gln43+Leu-peptide	N	MS	Ser	Asp	Leu	Gln	Leu	Glu	Arg	Ile	Vidmar et al., 2017
Tubulin beta-4B chain	P68371		peptide-Glu45+Arg-peptide	N	MS	Leu	Gln	Leu	Glu	Arg	Ile	Asn	Val	Vidmar et al., 2017
Tubulin beta-4B chain	P68371		peptide-Asn48+Val-peptide	N	MS	Glu	Arg	Ile	Asn	Val	Tyr	Tyr	Asn	Vidmar et al., 2017
Tubulin beta-4B chain	P68371		peptide-Asn52+Glu-peptide	N	MS	Val	Tyr	Tyr	Asn	Glu	Ala	Thr	Gly	Vidmar et al., 2017
Tubulin beta-4B chain	P68371		peptide-Glu53+Ala-peptide	N	MS	Tyr	Tyr	Asn	Glu	Ala	Thr	Gly	Gly	Vidmar et al., 2017
Tubulin beta-6 chain	Q9BUF5		peptide-Gly82+Gln-peptide	N	MS	Gly	Pro	Phe	Gly	Gln	Leu	Phe	Arg	Vidmar et al., 2017
Tubulin--tyrosine ligase-like protein 12	Q14166	133-144	Gln-Gln-Leu-Gln136+Gln-Peptide	N	MS	Gln	Gln	Leu	Gln	Gln	Val	Pro	Gly	Biniossek et al., 2011
Tumor protein D54	O43399		peptide-Arg50+Ala-peptide	N	MS	Glu	Glu	Leu	Arg	Ala	Glu	Leu	Thr	Vidmar et al., 2017
Tumor protein D54	O43399		peptide-Ala32+Ala-peptide	N	MS	Thr	Gly	Val	Ala	Ala	Arg	Thr	Pro	Vidmar et al., 2017
Tyrosine--tRNA ligase, cytoplasmic	P54577	38-51	IIe-Tyr-Trp40+Gly-Peptide	N	MS	-	Ile	Tyr	Trp	Gly	Thr	Ala	Thr	Biniossek et al., 2011
Tyrosine--tRNA ligase, cytoplasmic	P54577	451-470	Peptide-Gly460+Ser-Peptide	N	MS	Pro	Pro	Ala	Gly	Ser	Ala	Pro	Gly	Biniossek et al., 2011
Tyrosine--tRNA ligase, cytoplasmic	P54577	38-51	IIe-Tyr-Trp-Gly41+Thr-Peptide	N	MS	Ile	Tyr	Trp	Gly	Thr	Ala	Thr	Thr	Biniossek et al., 2011
U4/U6 small nuclear ribonucleoprotein Prp4	O43172	349-390	Peptide-Ala380+Gly-Peptide	N	MS	Gly	Ser	Leu	Ala	Gly	Thr	Gly	Gly	Biniossek et al., 2011
U5 small nuclear ribonucleoprotein 200 kDa helicase	O75643	1673-1702	Peptide-Gly1689+His-Peptide	N	MS	Gln	Met	Val	Gly	His	Ala	Asn	Arg	Biniossek et al., 2011
U5 small nuclear ribonucleoprotein 200 kDa helicase	O75643	805-829	Peptide-Asn820+Leu-Peptide	N	MS	Trp	Gly	Val	Asn	Leu	Pro	Ala	His	Biniossek et al., 2011
U5 small nuclear ribonucleoprotein 40 kDa protein	Q96DI7	276-286	IIe-Phe-Gln278+Gly-Peptide	N	MS	-	Ile	Phe	Gln	Gly	Asn	Val	His	Biniossek et al., 2011
U6 snRNA-associated Sm-like protein LSm2	Q9Y333	21-39	Peptide-His30+Ser-Peptide	N	MS	Gly	Thr	Leu	His	Ser	Val	Asp	Gln	Biniossek et al., 2011
Ubiquitin carboxyl-terminal hydrolase 15	Q9Y4E8	369-398	Peptide-Leu389+Asp-Peptide	N	MS	Ala	Phe	Leu	Leu	Asp	Gly	Leu	His	Biniossek et al., 2011
Ubiquitin carboxyl-terminal hydrolase isozyme L1	P09936	136-153	Peptide-Gln140+Ala-Peptide	N	MS	Glu	Ala	Ile	Gln	Ala	Ala	His	Asp	Biniossek et al., 2011
Ubiquitin carboxyl-terminal hydrolase isozyme L1	P09936	178-195	Peptide-Asn184+His-Peptide	N	MS	Phe	Pro	Val	Asn	His	Gly	Ala	Ser	Biniossek et al., 2011
Ubiquitin-40S ribosomal protein S27a	P62979		peptide-Lys27+Ala-peptide	N	MS	Glu	Asn	Val	Lys	Ala	Lys	Ile	Gln	Vidmar et al., 2017
Ubiquitin-40S ribosomal protein S27a	P62979		peptide-Lys104+Tyr-peptide	N	MS	Ala	Val	Leu	Lys	Tyr	Tyr	Lys	Val	Vidmar et al., 2017
Ubiquitin-40S ribosomal protein S27a	P62979		peptide-Glu16+Val-peptide	N	MS	Ile	Thr	Leu	Glu	Val	Glu	Pro	Ser	Vidmar et al., 2017
Ubiquitin-conjugating enzyme E2 D3	P61077		peptide-Cys111+Asp-peptide	N	MS	Ser	Leu	Leu	Cys	Asp	Pro	Asn	Pro	Vidmar et al., 2017
Ubiquitin-conjugating enzyme E2 K	P61086		peptide-Arg40+Gly-peptide	N	MS	Thr	Glu	Leu	Arg	Gly	Glu	Ile	Ala	Vidmar et al., 2017
Ubiquitin-conjugating enzyme E2 K	P61086		peptide-Asp30+Leu-peptide	N	MS	Ile	Lys	Val	Asp	Leu	Val	Asp	Glu	Vidmar et al., 2017
Ubiquitin-conjugating enzyme E2 L3	P68036	83-100	Peptide-IIe90+Ser-Peptide	N	MS	Leu	Pro	Val	Ile	Ser	Ala	Glu	Asn	Biniossek et al., 2011
Ubiquitin-conjugating enzyme E2 L3	P68036		peptide-Arg122+Ala-peptide	N	MS	His	Pro	Leu	Arg	Ala	Asp	Leu	Ala	Vidmar et al., 2017
Ubiquitin-conjugating enzyme E2 N	P61088		peptide-Ile39+Ala-peptide	N	MS	His	Val	Val	Ile	Ala	Gly	Pro	Gln	Vidmar et al., 2017
Ubiquitin-conjugating enzyme E2 O	Q9C0C9	826-849	Peptide-Thr834+Gly-Peptide	N	MS	Gln	Leu	Leu	Thr	Gly	Ser	Pro	Thr	Biniossek et al., 2011
Ubiquitin-conjugating enzyme E2 S	Q16763	150-164	Leu-Leu-Thr152+Glu-Peptide	N	MS	-	Leu	Leu	Thr	Glu	Ile	His	Gly	Biniossek et al., 2011
Ubiquitin-conjugating enzyme E2 variant 1	Q13404		peptide-Asn94+Ser-peptide	N	MS	Asn	Gly	Val	Asn	Ser	Ser	Asn	Gly	Vidmar et al., 2017
Ubiquitin-conjugating enzyme E2 variant 1	Q13404		peptide-Lys10+Val-peptide	N	MS	Ser	Gly	Val	Lys	Val	Pro	Arg	Asn	Vidmar et al., 2017
Ubiquitin-like modifier-activating enzyme 1	P22314	471-485	Peptide-Gly475+Ala-Peptide	N	MS	Phe	Leu	Val	Gly	Ala	Gly	Ala	Ile	Biniossek et al., 2011
Ubiquitin-like modifier-activating enzyme 1	P22314	369-385	Peptide-Gln374+Gln-Peptide	N	MS	Pro	Ala	Val	Gln	Gln	Asn	Asn	Leu	Biniossek et al., 2011
Ubiquitin-like modifier-activating enzyme 1	P22314	807-825	Peptide-Gln815+Ser-Peptide	N	MS	Gln	Glu	Leu	Gln	Ser	Ala	Asn	Ala	Biniossek et al., 2011
Ubiquitin-like-conjugating enzyme ATG3	Q9NT62	30-48	Peptide-Ala41+Ala-Peptide	N	MS	Glu	Phe	Val	Ala	Ala	Gly	Asp	His	Biniossek et al., 2011
UBX domain-containing protein 1	Q04323	63-91	Peptide-Glu73+Gly-Peptide	N	MS	Gly	Gly	Leu	Glu	Gly	Ser	Gly	Ser	Biniossek et al., 2011
UBX domain-containing protein 7	O94888	296-309	Ala-Ser-Leu-Gln299+Glu-Peptide	N	MS	Ala	Ser	Leu	Gln	Glu	Thr	His	Phe	Biniossek et al., 2011
UDP-N-acetylhexosamine pyrophosphorylase	Q16222	423-447	Peptide-Asn435+Ala-Peptide	N	MS	Trp	Val	Leu	Asn	Ala	Gly	Gly	His	Biniossek et al., 2011
UPF0556 protein C19orf10	Q969H8	61-91	Peptide-Gly82+Thr-Peptide	N	MS	Met	Ser	Leu	Gly	Thr	Ser	Glu	Asp	Biniossek et al., 2011
Uridine 5'-monophosphate synthase	P11172	333-352	Peptide-Asn341+Ala-Peptide	N	MS	Asp	Leu	Val	Asn	Ala	His	Val	Val	Biniossek et al., 2011
Uroporphyrinogen decarboxylase	P06132		peptide-Leu325+Asp-peptide	N	MS	Lys	Gln	Met	Leu	Asp	Asp	Phe	Gly	Vidmar et al., 2017
Uroporphyrinogen decarboxylase	P06132		peptide-Tyr311+Ala-peptide	N	MS	Cys	Ala	Leu	Tyr	Ala	Ser	Glu	Glu	Vidmar et al., 2017
Uroporphyrinogen decarboxylase	P06132		peptide-Arg21+Ala-peptide	N	MS	Thr	Phe	Leu	Arg	Ala	Ala	Trp	Gly	Vidmar et al., 2017
Uroporphyrinogen decarboxylase	P06132		peptide-Gly338+His-peptide	N	MS	Ala	Asn	Leu	Gly	His	Gly	Leu	Tyr	Vidmar et al., 2017
Utrophin	P46939	276-297	Peptide-Gln285+Ser-Peptide	N	MS	Ile	Asn	Ile	Gln	Ser	Thr	Ala	Pro	Biniossek et al., 2011
UV excision repair protein RAD23 homolog A	P54725		peptide-Thr200+Gly-peptide	N	MS	Tyr	Leu	Leu	Thr	Gly	Ile	Pro	Gly	Vidmar et al., 2017
UV excision repair protein RAD23 homolog A	P54725		peptide-Gln315+Val-peptide	N	MS	Asn	Tyr	Ile	Gln	Val	Thr	Pro	Gln	Vidmar et al., 2017
UV excision repair protein RAD23 homolog B	P54727	46-60	Leu-IIe-Tyr48+Ala-Peptide	N	MS	-	Leu	Ile	Tyr	Ala	Gly	Lys	Ile	Biniossek et al., 2011
UV excision repair protein RAD23 homolog B	P54727	152-173	Peptide-Ala158+Thr-Peptide	N	MS	Thr	Pro	Val	Ala	Thr	Ser	Pro	Thr	Biniossek et al., 2011
Vacuolar protein sorting-associated protein 35	Q96QK1	640-650	Cys-Phe-Ser642+Glu-Peptide	N	MS	-	Cys	Phe	Ser	Glu	Glu	Asn	His	Biniossek et al., 2011
Valine--tRNA ligase	P26640		peptide-Glu306+Ala-peptide	N	MS	Arg	Tyr	Val	Glu	Ala	Ala	Trp	Tyr	Vidmar et al., 2017
Valine--tRNA ligase	P26640		peptide-Phe577+Asp-peptide	N	MS	Pro	Ile	Val	Phe	Asp	Glu	Phe	Val	Vidmar et al., 2017
Valine--tRNA ligase	P26640		peptide-Gly435+Ser-peptide	N	MS	Lys	Lys	Leu	Gly	Ser	Ser	Leu	Asp	Vidmar et al., 2017
Valine--tRNA ligase	P26640		peptide-Ser293+Gly-peptide	N	MS	Lys	Asp	Val	Ser	Gly	Pro	Met	Pro	Vidmar et al., 2017
Vasodilator-stimulated phosphoprotein	P50552		peptide-Thr327+Thr-peptide	N	MS	Ser	Ser	Val	Thr	Thr	Ser	Glu	Thr	Vidmar et al., 2017
Vesicle-associated membrane protein 3	Q15836		peptide-Leu37+Glu-peptide	N	MS	Asp	Lys	Val	Leu	Glu	Arg	Asp	Gln	Vidmar et al., 2017
Vesicle-associated membrane protein 3	Q15836		peptide-Gln16+Gln-peptide	N	MS	Arg	Arg	Leu	Gln	Gln	Thr	Gln	Asn	Vidmar et al., 2017
Vesicle-associated membrane protein-associated protein A	Q9P0L0		peptide-Ala207+His-peptide	N	MS	Arg	Lys	Val	Ala	His	Ser	Asp	Lys	Vidmar et al., 2017
Vesicle-associated membrane protein-associated protein A	Q9P0L0		peptide-Phe130+Glu-peptide	N	MS	Arg	Cys	Val	Phe	Glu	Met	Pro	Asn	Vidmar et al., 2017
Vesicle-associated membrane protein-associated protein A	Q9P0L0		peptide-Met79+Leu-peptide	N	MS	Val	Ser	Val	Met	Leu	Gln	Pro	Phe	Vidmar et al., 2017
Vesicle-associated membrane protein-associated protein A	Q9P0L0		peptide-Ser166+Leu-peptide	N	MS	His	Ser	Val	Ser	Leu	Asn	Asp	Thr	Vidmar et al., 2017
Vesicle-associated membrane protein-associated protein A	Q9P0L0		peptide-Cys60+Val-peptide	N	MS	Arg	Arg	Tyr	Cys	Val	Arg	Pro	Asn	Vidmar et al., 2017
Vesicular integral-membrane protein VIP36	Q12907		peptide-Glu279+His-peptide	N	MS	Leu	Met	Val	Glu	His	Thr	Pro	Asp	Vidmar et al., 2017
Vimentin	P08670	237-255	Peptide-Gln246+Ala-Peptide	N	MS	Gln	Glu	Leu	Gln	Ala	Gln	Ile	Gln	Biniossek et al., 2011
Vimentin	P08670	37-50	Peptide-Gly41+Ser-Peptide	N	MS	Tyr	Ser	Leu	Gly	Ser	Ala	Leu	Arg	Biniossek et al., 2011
Vimentin	P08670		peptide-Asp219+Leu-peptide	N	MS	Ala	Arg	Leu	Asp	Leu	Glu	Arg	Lys	Vidmar et al., 2017
Vimentin	P08670		peptide-Ser299+Glu-peptide	N	MS	Ala	Asp	Leu	Ser	Glu	Ala	Ala	Asn	Vidmar et al., 2017
Vimentin	P08670		peptide-Leu443+Ile-peptide	N	MS	Arg	Thr	Leu	Leu	Ile	Lys	Thr	Val	Vidmar et al., 2017
Vimentin	P08670		peptide-Gln366+Asp-peptide	N	MS	Gly	Arg	Leu	Gln	Asp	Glu	Ile	Gln	Vidmar et al., 2017
Vimentin	P08670		peptide-Ile444+Lys-peptide	N	MS	Thr	Leu	Leu	Ile	Lys	Thr	Val	Glu	Vidmar et al., 2017
Vimentin	P08670		peptide-Glu109+Leu-peptide	N	MS	Glu	Leu	Gln	Glu	Leu	Asn	Asp	Arg	Vidmar et al., 2017
Vimentin	P08670		peptide-Gln204+Ser-peptide	N	MS	Asn	Thr	Leu	Gln	Ser	Phe	Arg	Gln	Vidmar et al., 2017
Vimentin	P08670		peptide-Arg158+Arg-peptide	N	MS	Arg	Glu	Leu	Arg	Arg	Gln	Val	Asp	Vidmar et al., 2017
Vimentin	P08670		peptide-Lys445+Thr-peptide	N	MS	Leu	Leu	Ile	Lys	Thr	Val	Glu	Thr	Vidmar et al., 2017
Vimentin	P08670		peptide-Arg310+Gln-peptide	N	MS	Asp	Ala	Leu	Arg	Gln	Ala	Lys	Gln	Vidmar et al., 2017
Vimentin	P08670		peptide-Glu225+Ser-peptide	N	MS	Arg	Lys	Val	Glu	Ser	Leu	Gln	Glu	Vidmar et al., 2017
Vimentin	P08670		peptide-Ala54+Ser-peptide	N	MS	Ser	Leu	Tyr	Ala	Ser	Ser	Pro	Gly	Vidmar et al., 2017
Vimentin	P08670		peptide-Lys334+Gly-peptide	N	MS	Asp	Ala	Leu	Lys	Gly	Thr	Asn	Glu	Vidmar et al., 2017
Vimentin	P08670		peptide-Arg424+Glu-peptide	N	MS	Leu	Asn	Leu	Arg	Glu	Thr	Asn	Leu	Vidmar et al., 2017
Vimentin	P08670		peptide-Gly147+Asp-peptide	N	MS	Ser	Arg	Leu	Gly	Asp	Leu	Tyr	Glu	Vidmar et al., 2017
Vimentin	P08670		peptide-Leu442+Leu-peptide	N	MS	Lys	Arg	Thr	Leu	Leu	Ile	Lys	Thr	Vidmar et al., 2017
Vimentin	P08670		peptide-Gln255+Ile-peptide	N	MS	Gln	His	Val	Gln	Ile	Asp	Val	Asp	Vidmar et al., 2017
Vimentin	P08670		peptide-Ala21+Ser-peptide	N	MS	Pro	Gly	Thr	Ala	Ser	Arg	Pro	Ser	Vidmar et al., 2017
Vimentin	P08670		peptide-Glu341+Arg-peptide	N	MS	Glu	Ser	Leu	Glu	Arg	Gln	Met	Arg	Vidmar et al., 2017
Vimentin	P08670		peptide-Arg273+Gln-peptide	N	MS	Arg	Asp	Val	Arg	Gln	Gln	Tyr	Glu	Vidmar et al., 2017
Vimentin	P08670		peptide-Phe15+Gly-peptide	N	MS	Arg	Arg	Met	Phe	Gly	Gly	Pro	Gly	Vidmar et al., 2017
Vimentin	P08670		peptide-Arg207+Gln-peptide	N	MS	Gln	Ser	Phe	Arg	Gln	Asp	Val	Asp	Vidmar et al., 2017
Vimentin	P08670		peptide-Ala352+Val-peptide	N	MS	Glu	Asn	Phe	Ala	Val	Glu	Ala	Ala	Vidmar et al., 2017
Vimentin	P08670		peptide-Gln285+Glu-peptide	N	MS	Lys	Asn	Leu	Gln	Glu	Ala	Glu	Glu	Vidmar et al., 2017
Vimentin	P08670		peptide-Arg71+Ser-peptide	N	MS	Val	Arg	Leu	Arg	Ser	Ser	Val	Pro	Vidmar et al., 2017
Vimentin	P08670		peptide-Gln195+Arg-peptide	N	MS	Glu	Met	Leu	Gln	Arg	Glu	Glu	Ala	Vidmar et al., 2017
Vimentin	P08670		peptide-Thr32+Thr-peptide	N	MS	Ser	Tyr	Val	Thr	Thr	Ser	Thr	Arg	Vidmar et al., 2017
Vimentin	P08670		peptide-Arg186+Glu-peptide	N	MS	Met	Arg	Leu	Arg	Glu	Lys	Leu	Gln	Vidmar et al., 2017
Vimentin	P08670		peptide-Glu172+Val-peptide	N	MS	Ala	Arg	Val	Glu	Val	Glu	Arg	Asp	Vidmar et al., 2017
Vimentin	P08670		peptide-Ala89+Asp-peptide	N	MS	Phe	Ser	Leu	Ala	Asp	Ala	Ile	Asn	Vidmar et al., 2017
Vimentin	P08670		peptide-Ser412+Leu-peptide	N	MS	Ser	Arg	Ile	Ser	Leu	Pro	Leu	Pro	Vidmar et al., 2017
Vimentin	P08670		peptide-Arg381+Glu-peptide	N	MS	Arg	His	Leu	Arg	Glu	Tyr	Gln	Asp	Vidmar et al., 2017
Vimentin	P08670		peptide-Lys373+Glu-peptide	N	MS	Gln	Asn	Met	Lys	Glu	Glu	Met	Ala	Vidmar et al., 2017
Vimentin	P08670		peptide-Glu448+Thr-peptide	N	MS	Lys	Thr	Val	Glu	Thr	Arg	Asp	Gly	Vidmar et al., 2017
Vimentin	P08670		peptide-Gln108+Glu-peptide	N	MS	Val	Glu	Leu	Gln	Glu	Leu	Asn	Asp	Vidmar et al., 2017
Vimentin	P08670		peptide-Ala115+Asn-peptide	N	MS	Asp	Arg	Phe	Ala	Asn	Tyr	Ile	Asp	Vidmar et al., 2017
Vimentin	P08670		peptide-Gln228+Glu-peptide	N	MS	Glu	Ser	Leu	Gln	Glu	Glu	Ile	Ala	Vidmar et al., 2017
Vimentin	P08670		peptide-Glu354+Ala-peptide	N	MS	Phe	Ala	Val	Glu	Ala	Ala	Asn	Tyr	Vidmar et al., 2017
Vimentin	P08670		peptide-Gly16+Gly-peptide	N	MS	Arg	Met	Phe	Gly	Gly	Pro	Gly	Thr	Vidmar et al., 2017
Vimentin	P08670		peptide-Ser7+Ser-peptide	N	MS	Arg	Ser	Val	Ser	Ser	Ser	Ser	Tyr	Vidmar et al., 2017
Vimentin	P08670		peptide-Lys235+Lys-peptide	N	MS	Ala	Phe	Leu	Lys	Lys	Leu	His	Glu	Vidmar et al., 2017
Vimentin	P08670		peptide-Leu131+Leu-peptide	N	MS	Asn	Lys	Ile	Leu	Leu	Ala	Glu	Leu	Vidmar et al., 2017
Vimentin	P08670		peptide-Glu174+Arg-peptide	N	MS	Val	Glu	Val	Glu	Arg	Asp	Asn	Leu	Vidmar et al., 2017
Vimentin	P08670		peptide-Arg450+Asp-peptide	N	MS	Val	Glu	Thr	Arg	Asp	Gly	Gln	Val	Vidmar et al., 2017
Vimentin	P08670		peptide-Asp429+Ser-peptide	N	MS	Thr	Asn	Leu	Asp	Ser	Leu	Pro	Leu	Vidmar et al., 2017
Vimentin	P08670		peptide-Leu234+Lys-peptide	N	MS	Ile	Ala	Phe	Leu	Lys	Lys	Leu	His	Vidmar et al., 2017
Vimentin	P08670		peptide-Glu106+Leu-peptide	N	MS	Glu	Lys	Val	Glu	Leu	Gln	Glu	Leu	Vidmar et al., 2017
Vimentin	P08670		peptide-Lys390+Met-peptide	N	MS	Leu	Asn	Val	Lys	Met	Ala	Leu	Asp	Vidmar et al., 2017
Vimentin	P08670		peptide-Leu194+Gln-peptide	N	MS	Glu	Glu	Met	Leu	Gln	Arg	Glu	Glu	Vidmar et al., 2017
Vimentin	P08670		peptide-Gln190+Glu-peptide	N	MS	Glu	Lys	Leu	Gln	Glu	Glu	Met	Leu	Vidmar et al., 2017
Vimentin	P08670		peptide-Asn111+Asp-peptide	N	MS	Gln	Glu	Leu	Asn	Asp	Arg	Phe	Ala	Vidmar et al., 2017
Vimentin	P08670		peptide-Leu132+Ala-peptide	N	MS	Lys	Ile	Leu	Leu	Ala	Glu	Leu	Glu	Vidmar et al., 2017
Vimentin	P08670		peptide-Lys292+Ser-peptide	N	MS	Glu	Trp	Tyr	Lys	Ser	Lys	Phe	Ala	Vidmar et al., 2017
WAS/WASL-interacting protein family member 2	Q8TF74	120-142	Peptide-Ser128+Ala-Peptide	N	MS	Pro	Pro	Val	Ser	Ala	Ala	Ser	Gly	Biniossek et al., 2011
Wings apart-like protein homolog	Q7Z5K2		peptide-Gly923+Lys-peptide	N	MS	Asn	His	Val	Gly	Lys	Ala	Val	Glu	Vidmar et al., 2017
WW domain-binding protein 11	Q9Y2W2	558-572	Peptide-Ser563+Ala-Peptide	N	MS	Ala	Thr	Ile	Ser	Ala	Lys	Pro	Gln	Biniossek et al., 2011
X-ray repair cross-complementing protein 5	P13010	546-565	Peptide-Thr549+Ala-Peptide	N	MS	Asp	Gln	Val	Thr	Ala	Gln	Glu	Ile	Biniossek et al., 2011
X-ray repair cross-complementing protein 5	P13010	52-81	Peptide-Ser69+Gly-Peptide	N	MS	Asn	Pro	Leu	Ser	Gly	Gly	Asp	Gln	Biniossek et al., 2011
X-ray repair cross-complementing protein 5	P13010	569-599	Peptide-Gly590+Ser-Peptide	N	MS	Thr	Ser	Val	Gly	Ser	Val	Asn	Pro	Biniossek et al., 2011
X-ray repair cross-complementing protein 5	P13010	401-413	Peptide-Gly406+Val-Peptide	N	MS	Pro	Gln	Val	Gly	Val	Ala	Phe	Pro	Biniossek et al., 2011
X-ray repair cross-complementing protein 6	P12956	326-339	Peptide-Glu330+Lys-Peptide	N	MS	Ile	Ile	Leu	Glu	Lys	Glu	Glu	Thr	Biniossek et al., 2011
Y-box-binding protein 3	P16989		peptide-Gly306+Glu-peptide	N	MS	Pro	Ala	Val	Gly	Glu	Ala	Glu	Asp	Vidmar et al., 2017
Z-Arg-Arg-NHMec			Z-Arg-Arg+NHMec	S		-	Z	Arg	Arg	AMC	-	-	-	Bromme et al., 1994
Z-Leu-Arg-NHMec			Z-Leu-Arg+NHMec	S		-	Z	Leu	Arg	AMC	-	-	-	Bromme et al., 1994
Z-Phe-Arg-NHMec			Z-Phe-Arg+NHMec	S		-	Z	Phe	Arg	AMC	-	-	-	Bromme et al., 1994
Z-Val-Arg-NHMec			Z-Val-Arg+NHMec	S		-	Z	Val	Arg	AMC	-	-	-	Bromme et al., 1994
Z-Val-Val-Arg-NHMec			Z-Val-Val-Arg+NHMec	S		Z	Val	Val	Arg	AMC	-	-	-	Kirschke, 2004