Substrates for peptidase S01.131: elastase-2

Summary Gene structure Alignment Tree Sequences Sequence features Distribution Structure Literature Substrates Pharma

Peptide and protein substrates that are thought to be physiologically relevant are indicated by P. Peptide and protein substrates that are thought to be pathologically relevant are indicated by D. Peptide and protein substrates that are not physiologically relevant are indicated by N. Synthetic substrates are indicated by S. Click on the symbol to show only physiological, non-physiological or synthetic substrates, or here to display all substrates. How cleavage sites have been identified are indicated by the following evidence codes: NT = N-terminal sequencing, MS = mass spectroscopy, MU = mutation, CS = consensus sequence, LC = liquid chromatography. To see all annotated cleavages for a protein substrate, click on the UniProt Accession.

Substrate	Uniprot	Residue range	Cleavage Site	Cleavage type	Evidence	P4	P3	P2	P1	P1'	P2'	P3'	P4'	Reference	CutDB
14-3-3 protein epsilon	P62258	153-170	AASDIAMT+ELPPTHPIR	N	MS	Ile	Ala	Met	Thr	Glu	Leu	Pro	Pro	Schilling & Overall, 2008
26S protease regulatory subunit S10B	P62333	48-62	ALQSV+GQIVGEVLK	N	MS	Leu	Gln	Ser	Val	Gly	Gln	Ile	Val	Schilling & Overall, 2008
26S proteasome non-ATPase regulatory subunit 7	P51665	153-177	peptide-Val170+Gly-peptide	N	MS	Ala	Glu	Glu	Val	Gly	Val	Glu	His	Schilling & Overall, 2008
3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1	Q5XJ04	469-498	peptide-Val484+His-peptide	N	MS	Val	Gly	Leu	Val	His	Ser	Asn	Ile	Schilling & Overall, 2008
40S ribosomal protein S3a	P61247	2-264	ACQSI+YPLHDVFVR	N	MS	Cys	Gln	Ser	Ile	Tyr	Pro	Leu	His	Schilling & Overall, 2008
40S ribosomal protein S7	P62081	15-37	peptide-Ala26+Leu-peptide	N	MS	Ile	Ser	Gln	Ala	Leu	Leu	Glu	Leu	Schilling & Overall, 2008
40S ribosomal protein SA	P08865	136-155	ASYVNLPT+IALCNTDSPLR	N	MS	Asn	Leu	Pro	Thr	Ile	Ala	Leu	Cys	Schilling & Overall, 2008
6-phosphofructokinase type C	Q01813	396-408	LAI+KLPDDQIPK	N	MS	-	Leu	Ala	Ile	Lys	Leu	Pro	Asp	Schilling & Overall, 2008
60 kDa heat shock protein, mitochondrial	P10809	315-344	peptide-Thr5+Gly-peptide	N	MS	Ala	Ile	Ala	Thr	Gly	Gly	Ala	Val	Schilling & Overall, 2008
60 kDa heat shock protein, mitochondrial	P10809	316-344	peptide-Leu17+Asn-peptide	N	MS	Gly	Leu	Thr	Leu	Asn	Leu	Glu	Asp	Schilling & Overall, 2008
60 kDa heat shock protein, mitochondrial	P10809	345-359	VGEVIV+TKDDAMLLK	N	MS	Glu	Val	Ile	Val	Thr	Lys	Asp	Asp	Schilling & Overall, 2008
60 kDa heat shock protein, mitochondrial	P10809	316-344	peptide-Leu15+Thr-peptide	N	MS	Glu	Glu	Gly	Leu	Thr	Leu	Asn	Leu	Schilling & Overall, 2008
60 kDa heat shock protein, mitochondrial	P10809	345-359	VGEVI+VTKDDAMLLK	N	MS	Gly	Glu	Val	Ile	Val	Thr	Lys	Asp	Schilling & Overall, 2008
60S acidic ribosomal protein P2	P05387	25-41	ILDSV+GIEADDDRLNK	N	MS	Leu	Asp	Ser	Val	Gly	Ile	Glu	Ala	Schilling & Overall, 2008
60S acidic ribosomal protein P2	P05387	61-94	peptide-Val73+Ser-peptide	N	MS	Ala	Val	Ala	Val	Ser	Ala	Ala	Pro	Schilling & Overall, 2008
60S ribosomal protein L10a	P62906	62-78	FSV+CVLGDQQHCDEAK	N	MS	-	Phe	Ser	Val	Cys	Val	Leu	Gly	Schilling & Overall, 2008
60S ribosomal protein L10a	P62906	133-147	FPS+LLTHNENMVAK	N	MS	-	Phe	Pro	Ser	Leu	Leu	Thr	His	Schilling & Overall, 2008
60S ribosomal protein L24	P83731	80-93	AITGA+SLADIMAK	N	MS	Ile	Thr	Gly	Ala	Ser	Leu	Ala	Asp	Schilling & Overall, 2008
60S ribosomal protein L32	P62910	50-65	GQI+LMPNIGYGSNKK	N	MS	-	Gly	Gln	Ile	Leu	Met	Pro	Asn	Schilling & Overall, 2008
A-type flagellin	P21184	2-394	peptide-Val58+Asn-peptide	P		Thr	Ser	Gln	Val	Asn	Gly	Leu	Asn	L�pez-Boado et al., 2004	21631
Acetyl-CoA acetyltransferase, mitochondrial	P24752	166-181	GSTPYGGV+KLEDLIVK	N	MS	Tyr	Gly	Gly	Val	Lys	Leu	Glu	Asp	Schilling & Overall, 2008
actin, cytoplasmic 1	P60709	2-375	peptide-Val43+Met-peptide	P		His	Gln	Gly	Val	Met	Val	Gly	Met	Yamashita et al., 2001	18919
activated RNA polymerase II transcriptional coactivator p15	P53999	101-114	GI+SLNPEQWSQLK	N	MS	-	-	Gly	Ile	Ser	Leu	Asn	Pro	Schilling & Overall, 2008
aflatoxin B1 aldehyde reductase member 2	O43488	66-99	peptide-Ile85+Leu-peptide	N	MS	Ser	Glu	Thr	Ile	Leu	Gly	Gly	Leu	Schilling & Overall, 2008
aggrecan core protein	P16112	17-2415	peptide-Val397+Ile-peptide	P		Arg	Gly	Ser	Val	Ile	Leu	Thr	Val	Fosang et al., 1992	18246
alpha-1-antichymotrypsin	P01011	24-423	peptide-Thr358+Leu-peptide	P		Val	Lys	Ile	Thr	Leu	Leu	Ser	Ala		17228
alpha-1-peptidase inhibitor	P01009	25-418	peptide-Met382+Ser-peptide	P		Ala	Ile	Pro	Met	Ser	Ile	Pro	Pro	Nelson et al., 1999	22554
alpha-2-antiplasmin	P08697	40-491	peptide-Ala400+Met-peptide	P		Thr	Ser	Ile	Ala	Met	Ser	Arg	Met	Shieh & Travis, 1987	3318
alpha-2-antiplasmin	P08697	40-491	peptide-Arg403+Met-peptide	P		Ala	Met	Ser	Arg	Met	Ser	Leu	Ser	Shieh & Travis, 1987	24032
alpha-actinin-4	O43707	521-535	QLEAI+DQLHLEYAK	N	MS	Leu	Glu	Ala	Ile	Asp	Gln	Leu	His	Schilling & Overall, 2008
alpha-actinin-4	O43707	217-233	DDPV+TNLNNAFEVAEK	N	MS	Asp	Asp	Pro	Val	Thr	Asn	Leu	Asn	Schilling & Overall, 2008
alpha-aminoadipic semialdehyde dehydrogenase isoform 2	P49419-2	347-362	QAV+SMFLGAVEEAKK	N	MS	-	Gln	Ala	Val	Ser	Met	Phe	Leu	Schilling & Overall, 2008
Alpha-endosulfine	A6NMQ3	1-140	V+TGDHIPTPQDLPQR	N	MS	-	-	-	Val	Thr	Gly	Asp	His	Schilling & Overall, 2008
Alpha-endosulfine isoform 4	O43768-4	114-129	V+TGDHIPTPQDLPQR	N	MS	-	-	-	Val	Thr	Gly	Asp	His	Schilling & Overall, 2008
angiotensin-1	P01019	34-43	Asp-Arg-Val-Tyr-Ile-His-Pro-Phe+His-Leu	N		Ile	His	Pro	Phe	His	Leu	-	-	Ramaha & Patson, 2002
angiotensin-2	P01019	34-41	Asp-Arg-Val+Tyr-Ile-His-Pro-Phe	P		-	Asp	Arg	Val	Tyr	Ile	His	Pro	Ramaha & Patson, 2002
angiotensinogen	P01019	34-485	peptide-Val44+Ile-peptide	P		Phe	His	Leu	Val	Ile	His	Asn	Glu	Ramaha & Patson, 2002
Antileukoproteinase	P03973	26-132	Peptide-Ser40+Ala-Peptide	P	MS	Pro	Lys	Lys	Ser	Ala	Gln	Cys	Leu	Weldon et al., 2009
Antileukoproteinase	P03973	26-132	Peptide-Ala41+Gln-Peptide	P	MS	Lys	Lys	Ser	Ala	Gln	Cys	Leu	Arg	Weldon et al., 2009
antithrombin-III	P01008	33-464	peptide-Ile422+Ala-peptide	P		Ala	Val	Val	Ile	Ala	Gly	Arg	Ser	Chang et al., 1996
apolipoprotein A-II	P02652	24-100	peptide-Val41+Thr-peptide	P		Phe	Gln	Thr	Val	Thr	Asp	Tyr	Gly	Byrne et al., 1984	19669
apolipoprotein(a)	P08519	20-4548	peptide-Ile4215+Gln-peptide	P		Pro	Thr	Val	Ile	Gln	Val	Pro	Ser	Edelstein et al., 1997	3317
apolipoprotein(a)	P08519	20-4548	peptide-Thr3865+Leu-peptide	P		Met	Glu	Ser	Thr	Leu	Leu	Thr	Thr	Edelstein et al., 1997	3316
apolipoprotein(a)	P08519	20-4548	peptide-Ile3539+Leu-peptide	P		Pro	Asn	Val	Ile	Leu	Ala	Pro	Ser	Edelstein et al., 1997	3315
aspartate aminotransferase, mitochondrial precursor	P00505	94-107	EYLPI+GGLAEFCK	N	MS	Tyr	Leu	Pro	Ile	Gly	Gly	Leu	Ala	Schilling & Overall, 2008
ATP synthase subunit beta, mitochondrial precursor	P06576	124-143	VLDSGAPI+KIPVGPETLGR	N	MS	Gly	Ala	Pro	Ile	Lys	Ile	Pro	Val	Schilling & Overall, 2008
ATP-dependent RNA helicase DDX39	O00148	57-89	peptide-Ile79+Leu-peptide	N	MS	Pro	Gln	Ala	Ile	Leu	Gly	Met	Asp	Schilling & Overall, 2008
Basigin isoform 4	P35613-4	1-205	MGT+ANIQLHGPPR	N	MS	-	Met	Gly	Thr	Ala	Asn	Ile	Gln	Schilling & Overall, 2008
beta-enolase	P13929	32-50	AAVPSGA+STGIYEALELR	N	MS	Pro	Ser	Gly	Ala	Ser	Thr	Gly	Ile	Schilling & Overall, 2008
BXDC2 protein	A0JLQ5	295-326	peptide-Ile318+Gln-peptide	N	MS	Pro	Ile	Glu	Ile	Gln	Trp	Val	Lys	Schilling & Overall, 2008
C-C motif chemokine 15	Q16663	22-113	peptide-Val42+Val-peptide	P	NT	Glu	Asn	Pro	Val	Val	Leu	Asn	Ser	Richter et al., 2005
C-C motif chemokine 3	P10147	24-92	peptide-Thr38+Ser-peptide	P	MS	Phe	Ser	Tyr	Thr	Ser	Arg	Gln	Ile	Ryu et al., 2005
C-C motif chemokine 3	P10147	24-92	peptide-Ser39+Arg-peptide	P	MS	Ser	Tyr	Thr	Ser	Arg	Gln	Ile	Pro	Ryu et al., 2005
C-C motif chemokine 3	P10147	24-92	peptide-Thr53+Ser-peptide	P	MS	Tyr	Phe	Glu	Thr	Ser	Ser	Gln	Cys	Ryu et al., 2005
C-C motif chemokine 3-like 1	P16619	24-93	peptide-Cys35+Phe-peptide	P	MS	Thr	Ala	Cys	Cys	Phe	Ser	Tyr	Thr	Ryu et al., 2005
C-C motif chemokine 3-like 1	P16619	24-93	peptide-Thr39+Ser-peptide	P	MS	Phe	Ser	Tyr	Thr	Ser	Arg	Gln	Ile	Ryu et al., 2005
C-C motif chemokine 3-like 1	P16619	24-93	peptide-Ser40+Arg-peptide	P	MS	Ser	Tyr	Thr	Ser	Arg	Gln	Ile	Pro	Ryu et al., 2005
Cadherin-5	P33151	48-478	Peptide-Gln249+Asp-Peptide	P	NT	Val	Thr	Leu	Gln	Asp	Ile	Asn	Asp	Hermant et al., 2003
Cadherin-5	P33151	48-478	Peptide-Asp250+Ile-Peptide	P	NT	Thr	Leu	Gln	Asp	Ile	Asn	Asp	Asn	Hermant et al., 2003
Cadherin-5	P33151	48-478	Peptide-Phe137+Thr-Peptide	P	NT	Pro	Ser	Ser	Phe	Thr	Ile	Lys	Val	Hermant et al., 2003
Cadherin-5	P33151	48-478	Peptide-Lys140+Val-Peptide	P	NT	Phe	Thr	Ile	Lys	Val	His	Asp	Val	Hermant et al., 2003
calreticulin precursor	P27797	111-142	peptide-Ile130+Met-peptide	N	MS	Glu	Tyr	Asn	Ile	Met	Phe	Gly	Pro	Schilling & Overall, 2008
CALU protein	Q6IAW5	173-189	EEFT+AFLHPEEYDYMK	N	MS	Glu	Glu	Phe	Thr	Ala	Phe	Leu	His	Schilling & Overall, 2008
cathelicidin antimicrobial peptide	P49913	31-170	peptide-Ala133+Leu-peptide	P		Lys	Arg	Phe	Ala	Leu	Leu	Gly	Asp	Sorensen et al., 2001	3320
cDNA FLJ25678 fis, clone TST04067, highly similar to PURINE NUCLEOSIDE PHOSPHORYLASE	Q8N7G1	11-22	NTA+EWLLSHTK	N	MS	-	Asn	Thr	Ala	Glu	Trp	Leu	Leu	Schilling & Overall, 2008
cDNA FLJ38173 fis, clone FCBBF1000053, highly similar to HYDROXYMETHYLGLUTARYL-COA SYNTHASE, CYTOPLASMIC	Q8N995	458-487	peptide-Val473+His-peptide	N	MS	Val	Gly	Leu	Val	His	Ser	Asn	Ile	Schilling & Overall, 2008
cDNA FLJ45706 fis, clone FEBRA2028457, highly similar to Nucleolin	Q6ZS99	532-541	V+TLDWAKPK	N	MS	-	-	-	Val	Thr	Leu	Asp	Trp	Schilling & Overall, 2008
cDNA FLJ76585, highly similar to Homo sapiens brix domain containing 2	A8K0P5	295-326	peptide-Ile318+Gln-peptide	N	MS	Pro	Ile	Glu	Ile	Gln	Trp	Val	Lys	Schilling & Overall, 2008
cDNA FLJ78591, highly similar to Homo sapiens ribosomal protein S3A	A8K4W0	94-107	NCLT+NFHGMDLTR	N	MS	Asn	Cys	Leu	Thr	Asn	Phe	His	Gly	Schilling & Overall, 2008
cDNA FLJ78591, highly similar to Homo sapiens ribosomal protein S3A	A8K4W0	199-213	ACQSI+YPLHDVFVR	N	MS	Cys	Gln	Ser	Ile	Tyr	Pro	Leu	His	Schilling & Overall, 2008
cDNA, FLJ92049, Homo sapiens ribosomal protein S3A	B2R4D4	94-107	NCLT+NFHGMDLTR	N	MS	Asn	Cys	Leu	Thr	Asn	Phe	His	Gly	Schilling & Overall, 2008
cDNA, FLJ92049, Homo sapiens ribosomal protein S3A	B2R4D4	199-213	ACQSI+YPLHDVFVR	N	MS	Cys	Gln	Ser	Ile	Tyr	Pro	Leu	His	Schilling & Overall, 2008
cDNA, FLJ92534, highly similar to Homo sapiens heat shock 60kDa protein 1	B2R5M6	315-344	peptide-Thr320+Gly-peptide	N	MS	Ala	Ile	Ala	Thr	Gly	Gly	Ala	Val	Schilling & Overall, 2008
cDNA, FLJ92534, highly similar to Homo sapiens heat shock 60kDa protein 1	B2R5M6	314-344	peptide-Leu332+Asn-peptide	N	MS	Gly	Leu	Thr	Leu	Asn	Leu	Glu	Asp	Schilling & Overall, 2008
cDNA, FLJ92534, highly similar to Homo sapiens heat shock 60kDa protein 1	B2R5M6	344-359	VGEVIV+TKDDAMLLK	N	MS	Glu	Val	Ile	Val	Thr	Lys	Asp	Asp	Schilling & Overall, 2008
cDNA, FLJ92534, highly similar to Homo sapiens heat shock 60kDa protein 1	B2R5M6	314-344	peptide-Leu330+Thr-peptide	N	MS	Glu	Glu	Gly	Leu	Thr	Leu	Asn	Leu	Schilling & Overall, 2008
cDNA, FLJ92534, highly similar to Homo sapiens heat shock 60kDa protein 1	B2R5M6	429-446	AAVEEGI+VLGGGCALLR	N	MS	Glu	Glu	Gly	Ile	Val	Leu	Gly	Gly	Schilling & Overall, 2008
cDNA, FLJ92534, highly similar to Homo sapiens heat shock 60kDa protein 1	B2R5M6	344-359	VGEVI+VTKDDAMLLK	N	MS	Gly	Glu	Val	Ile	Val	Thr	Lys	Asp	Schilling & Overall, 2008
cDNA, FLJ92782, highly similar to Homo sapiens damage-specific DNA binding protein 1, 127kDa	B2R648	111-129	IGRPSET+GIIGIIDPECR	N	MS	Pro	Ser	Glu	Thr	Gly	Ile	Ile	Gly	Schilling & Overall, 2008
cDNA, FLJ92949, Homo sapiens acetyl-Coenzyme A acetyltransferase 1	B2R6H1	165-181	GSTPYGGV+KLEDLIVK	N	MS	Tyr	Gly	Gly	Val	Lys	Leu	Glu	Asp	Schilling & Overall, 2008
cDNA, FLJ95457, highly similar to Homo sapiens tubulin, beta, 4	B2RBD5	103-121	GHYTEGAELV+DSVLDVVR	N	MS	Ala	Glu	Leu	Val	Asp	Ser	Val	Leu	Schilling & Overall, 2008
cDNA, FLJ96671, Homo sapiens 3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1	B2RDL8	469-498	peptide-Val484+His-peptide	N	MS	Val	Gly	Leu	Val	His	Ser	Asn	Ile	Schilling & Overall, 2008
coagulation factor IX	P00740	47-461	peptide-Val227+Val-peptide	P		Phe	Thr	Arg	Val	Val	Gly	Gly	Glu	Samis et al., 1998	21430
coagulation factor IX	P00740	47-461	peptide-Ile210+Leu-peptide	P		Ala	Glu	Thr	Ile	Leu	Asp	Asn	Ile	Samis et al., 1998	21432
coagulation factor IX	P00740	47-461	peptide-Thr190+Arg-peptide	P		Ser	Lys	Leu	Thr	Arg	Ala	Glu	Thr	Samis et al., 1998	21433
coagulation factor IX	P00740	47-461	peptide-Thr186+Ser-peptide	P		Val	Ser	Gln	Thr	Ser	Lys	Leu	Thr	Samis et al., 1998	21434
coagulation factor IX	P00740	47-461	peptide-Thr218+Gln-peptide	P		Thr	Gln	Ser	Thr	Gln	Ser	Phe	Asn	Samis et al., 1998	21431
coagulation factor V	P12259	29-2224	peptide-Ile736+Arg-peptide	P		Ala	Leu	Gly	Ile	Arg	Ser	Phe	Arg	Camire et al., 1998	19373
coagulation factor V	P12259	29-2224	peptide-Ile847+Arg-peptide	P		Val	Thr	Gly	Ile	Arg	Leu	Leu	Ser	Camire et al., 1998	3309
coagulation factor V	P12259	29-2224	peptide-Ile1512+Val-peptide	P		Pro	Leu	Val	Ile	Val	Gly	Leu	Ser	Camire et al., 1998	3310
coagulation factor V	P12259	29-2224	peptide-Thr1795+Ser-peptide	P		Trp	Arg	Leu	Thr	Ser	Ser	Glu	Met	Samis et al., 1997	3313
coagulation factor V	P12259	29-2224	peptide-Ile536+Gln-peptide	P		Arg	Arg	Gly	Ile	Gln	Arg	Ala	Ala	Samis et al., 1997	3312
coagulation factor V	P12259	29-2224	peptide-Ala369+Asn-peptide	P		Val	Ile	Pro	Ala	Asn	Met	Asp	Lys	Samis et al., 1997	3311
Coagulation factor V	P12259	29-2224	peptide-Thr706+Arg-peptide	N	-	Val	Met	Ala	Thr	Arg	Lys	Met	His	Camire et al., 1998
collagen alpha-1(III) chain	P02461	154-1221	peptide-Ile952+Thr-peptide	P		Ile	Ala	Gly	Ile	Thr	Gly	Ala	Arg	Mainardi et al., 1980	19009
collagen alpha-1(III) chain	P02461	154-1221	peptide-Ala955+Arg-peptide	P		Ile	Thr	Gly	Ala	Arg	Gly	Leu	Ala	Mainardi et al., 1980	19010
Collagenase 3 precursor	P45452	20-471	peptide-Val90+Met-peptide	P	NT	Thr	Leu	Asp	Val	Met	Lys	Lys	Pro	Wilkinson et al., 2022
complement C3	P01024	23-1663	peptide-Ala1350+Lys-peptide	P	NT	Met	Tyr	His	Ala	Lys	Ala	Lys	Asp	Claesson et al., 2010
complement C3	P01024	23-1663	peptide-Val987+Ala-peptide	P	NT	Gly	Thr	Pro	Val	Ala	Gln	Met	Thr	Claesson et al., 2010
complement component 1 Q subcomponent-binding protein, mitochondrial precursor	Q07021	154-174	VEEQEPELT+STPNFVVEVIK	N	MS	Pro	Glu	Leu	Thr	Ser	Thr	Pro	Asn	Schilling & Overall, 2008
COP9 signalosome complex subunit 3	Q9UNS2	366-382	YNNPA+MLHNIDQEMLK	N	MS	Asn	Asn	Pro	Ala	Met	Leu	His	Asn	Schilling & Overall, 2008
creatine kinase B-type	P12277	69-86	MTV+GCVAGDEESYEVFK	N	MS	-	Met	Thr	Val	Gly	Cys	Val	Ala	Schilling & Overall, 2008
creatine kinase B-type	P12277	320-341	peptide-Val330+Gly-peptide	N	MS	Thr	Ala	Ala	Val	Gly	Gly	Val	Phe	Schilling & Overall, 2008
creatine kinase B-type	P12277	45-96	peptide-Phe85+Lys-peptide	N	MS	Tyr	Glu	Val	Phe	Lys	Asp	Leu	Phe	Schilling & Overall, 2008
creatine kinase B-type	P12277	224-236	FLV+WVNEEDHLR	N	MS	-	Phe	Leu	Val	Trp	Val	Asn	Glu	Schilling & Overall, 2008
creatine kinase M-type	P06732	69-86	MTV+GCVAGDEESYEVFK	N	MS	-	Met	Thr	Val	Gly	Cys	Val	Ala	Schilling & Overall, 2008
creatine kinase M-type	P06732	224-236	FLV+WVNEEDHLR	N	MS	-	Phe	Leu	Val	Trp	Val	Asn	Glu	Schilling & Overall, 2008
CSDA protein variant	Q59EB5	1-18	AAAA+SLATAAGSEDAEKK	N	MS	Ala	Ala	Ala	Ala	Ser	Leu	Ala	Thr	Schilling & Overall, 2008
cystatin C	P01034	27-146	peptide-Val36+Gly-peptide	P	NT	Pro	Arg	Leu	Val	Gly	Gly	Pro	Met	Abrahamson et al., 1998
cystatin-B	P04080	1-24	peptide-Ala12+Thr-peptide	N	MS	Thr	Gln	Pro	Ala	Thr	Ala	Glu	Thr	Schilling & Overall, 2008
cytochrome C oxidase subunit VIb isoform 1	P14854	59-77	VYQSLCPT+SWVTDWDEQR	N	MS	Leu	Cys	Pro	Thr	Ser	Trp	Val	Thr	Schilling & Overall, 2008
cytosol alanyl aminopeptidase	P55786	781-794	VLGA+TLLPDLIQK	N	MS	Val	Leu	Gly	Ala	Thr	Leu	Leu	Pro	Schilling & Overall, 2008
dihydrolipoyl dehydrogenase, mitochondrial precursor	P09622	449-482	peptide-Ala467+Ala-peptide	N	MS	Val	Asn	Glu	Ala	Ala	Leu	Ala	Leu	Schilling & Overall, 2008
DJ-1 putative peptidase	Q99497	63-89	peptide-Val70+Val-peptide	N	MS	Tyr	Asp	Val	Val	Val	Leu	Pro	Gly	Schilling & Overall, 2008
DOCK4 protein	Q149N5	1095-1118	peptide-Glu1108+Val-peptide	N	MS	Pro	Phe	Leu	Glu	Val	Thr	Leu	Ile	Schilling & Overall, 2008
dynactin subunit 2	Q13561	14-58	peptide-Ile46+Ile-peptide	N	MS	Val	Glu	His	Ile	Ile	Val	Asn	Pro	Schilling & Overall, 2008
E3 SUMO-protein ligase RanBP2	P49792	1152-1185	peptide-Val1175+Val-peptide	N	MS	Phe	Glu	Pro	Val	Val	Pro	Leu	Pro	Schilling & Overall, 2008
EEF1A1 protein	Q6NS35	5-20	THINIV+VIGHVDSGK	N	MS	Ile	Asn	Ile	Val	Val	Ile	Gly	His	Schilling & Overall, 2008
EEF1A1 protein	Q6NSH7	5-20	THINIV+VIGHVDSGK	N	MS	Ile	Asn	Ile	Val	Val	Ile	Gly	His	Schilling & Overall, 2008
Elafin	P19957	61-117	peptide-Val65+Lys-peptide	P		Gln	Glu	Pro	Val	Lys	Gly	Pro	Val	Guyot et al., 2008	22092
Elafin	P19957	61-117	peptide-Val69+Ser-peptide	P		Lys	Gly	Pro	Val	Ser	Thr	Lys	Pro	Guyot et al., 2008	22093
Elafin	P19957	61-117	peptide-Ala84+Met-peptide	P		Ile	Arg	Cys	Ala	Met	Leu	Asn	Pro	Guyot et al., 2008	22094
elongation factor 1-alpha 1	P68104	219-255	peptide-Leu246+Arg-peptide	N	MS	Asp	Lys	Pro	Leu	Arg	Leu	Pro	Leu	Schilling & Overall, 2008
elongation factor 1-alpha 1	P68104	5-20	THINIV+VIGHVDSGK	N	MS	Ile	Asn	Ile	Val	Val	Ile	Gly	His	Schilling & Overall, 2008
elongation factor 1-alpha 2	Q05639	219-255	peptide-Leu246+Arg-peptide	N	MS	Asp	Lys	Pro	Leu	Arg	Leu	Pro	Leu	Schilling & Overall, 2008
elongation factor 1-alpha 2	Q05639	5-20	THINIV+VIGHVDSGK	N	MS	Ile	Asn	Ile	Val	Val	Ile	Gly	His	Schilling & Overall, 2008
elongation factor 1-beta	P24534	139-157	SSI+LLDVKPWDDETDMAK	N	MS	-	Ser	Ser	Ile	Leu	Leu	Asp	Val	Schilling & Overall, 2008
elongation factor 1-beta	P24534	22-54	peptide-Val41+Ser-peptide	N	MS	Phe	Glu	Ala	Val	Ser	Ser	Pro	Pro	Schilling & Overall, 2008
elongation factor 2	P13639	456-481	peptide-Val470+Gly-peptide	N	MS	Gly	Asn	Ile	Val	Gly	Leu	Val	Gly	Schilling & Overall, 2008
elongation factor Tu, mitochondrial precursor	P49411	300-311	TVV+TGIEMFHK	N	MS	-	Thr	Val	Val	Thr	Gly	Ile	Glu	Schilling & Overall, 2008
endoplasmin	P14625	102-116	ELI+SNASDALDKIR	N	MS	-	Glu	Leu	Ile	Ser	Asn	Ala	Ser	Schilling & Overall, 2008
epithelial cadherin	Q9R0T4	159-886	peptide-Val393+Gly-peptide	P		Glu	Asn	Glu	Val	Gly	Ala	Arg	Ile	Mayerle et al., 2005
eukaryotic initiation factor 4A-I	P60842	369-382	GVAI+NMVTEEDKR	N	MS	Gly	Val	Ala	Ile	Asn	Met	Val	Thr	Schilling & Overall, 2008
eukaryotic translation elongation factor 1 alpha 2 variant	Q59GP5	195-231	peptide-Leu222+Arg-peptide	N	MS	Asp	Lys	Pro	Leu	Arg	Leu	Pro	Leu	Schilling & Overall, 2008
eukaryotic translation elongation factor 1 gamma	Q53YD7	414-428	EYF+SWEGAFQHVGK	N	MS	-	Glu	Tyr	Phe	Ser	Trp	Glu	Gly	Schilling & Overall, 2008
eukaryotic translation elongation factor 1 gamma	Q53YD7	285-295	STF+VLDEFKR	N	MS	-	Ser	Thr	Phe	Val	Leu	Asp	Glu	Schilling & Overall, 2008
eukaryotic translation initiation factor 2 subunit 3	P41091	1-17	AGGEAGV+TLGQPHLSR	N	MS	Glu	Ala	Gly	Val	Thr	Leu	Gly	Gln	Schilling & Overall, 2008
eukaryotic translation initiation factor 5A-2	Q9GZV4	68-85	YEDICPS+THNMDVPNIK	N	MS	Ile	Cys	Pro	Ser	Thr	His	Asn	Met	Schilling & Overall, 2008
FACT complex subunit SPT16	Q9Y5B9	1-12	MAV+TLDKDAYYR	N	MS	-	Met	Ala	Val	Thr	Leu	Asp	Lys	Schilling & Overall, 2008
fatty acid synthase	P49327	802-825	peptide-Asn813+Ala-peptide	N	MS	Ala	Asn	Pro	Asn	Ala	Leu	Phe	Pro	Schilling & Overall, 2008
fatty acid synthase	P49327	676-700	peptide-Ile690+Ala-peptide	N	MS	Met	Glu	Ala	Ile	Ala	Pro	Pro	Leu	Schilling & Overall, 2008
fatty acid synthase	P49327	1470-1495	peptide-Thr1480+Ser-peptide	N	MS	Leu	Ser	Ser	Thr	Ser	His	Val	Pro	Schilling & Overall, 2008
fatty acid synthase	P49327	257-274	EQGV+TFPSGDIQEQLIR	N	MS	Glu	Gln	Gly	Val	Thr	Phe	Pro	Ser	Schilling & Overall, 2008
fibronectin	P02751	32-2386	peptide-Val1457+Ala-peptide	P	MS	Leu	Glu	Val	Val	Ala	Ala	Thr	Pro	Doucet & Overall, 2010
fibronectin	P02751	32-2386	peptide-Leu2232+Cys-peptide	P	MS	Phe	Lys	Leu	Leu	Cys	Gln	Cys	Leu	Doucet & Overall, 2010
fibronectin	P02751	32-2386	peptide-Ile2316+Cys-peptide	P	MS	Leu	Gly	Ala	Ile	Cys	Ser	Cys	Thr	Doucet & Overall, 2010
fibronectin	P02751	32-2386	peptide-Ile1897+Asp-peptide	P	MS	Pro	Val	Val	Ile	Asp	Ala	Ser	Thr	Doucet & Overall, 2010
fibronectin	P02751	32-2386	peptide-Val211+Asp-peptide	P	MS	Trp	Met	Met	Val	Asp	Cys	Thr	Cys	Doucet & Overall, 2010
fibronectin	P02751	32-2386	peptide-Val558+Asp-peptide	P	MS	Cys	Asp	Pro	Val	Asp	Gln	Cys	Gln	Doucet & Overall, 2010
fibronectin	P02751	32-2386	peptide-Ile480+Gly-peptide	P	MS	Met	Tyr	Arg	Ile	Gly	Asp	Gln	Trp	Doucet & Overall, 2010
fibronectin	P02751	32-2386	peptide-Leu2236+Gly-peptide	P	MS	Cys	Gln	Cys	Leu	Gly	Phe	Gly	Ser	Doucet & Overall, 2010
fibronectin	P02751	32-2386	peptide-Ser2227+Gly-peptide	P	MS	Met	Ser	Glu	Ser	Gly	Phe	Lys	Leu	Doucet & Overall, 2010
fibronectin	P02751	32-2386	peptide-Ala465+His-peptide	P	MS	Pro	Met	Ala	Ala	His	Glu	Glu	Ile	Doucet & Overall, 2010
fibronectin	P02751	32-2386	peptide-Ser2213+His-peptide	P	MS	Tyr	Thr	Val	Ser	His	Tyr	Ala	Val	Doucet & Overall, 2010
fibronectin	P02751	32-2386	peptide-Met2050+Ile-peptide	P	MS	Gly	Gln	Gln	Met	Ile	Phe	Glu	Glu	Doucet & Overall, 2010
fibronectin	P02751	32-2386	peptide-Leu2231+Leu-peptide	P	MS	Gly	Phe	Lys	Leu	Leu	Cys	Gln	Cys	Doucet & Overall, 2010
fibronectin	P02751	32-2386	peptide-Ala73+Leu-peptide	P	MS	Leu	Gly	Asn	Ala	Leu	Val	Cys	Thr	Doucet & Overall, 2010
fibronectin	P02751	32-2386	peptide-Ile925+Met-peptide	P	MS	Lys	Val	Thr	Ile	Met	Trp	Thr	Pro	Doucet & Overall, 2010
fibronectin	P02751	32-2386	peptide-Val2256+Asn-peptide	P	MS	Asp	Asn	Gly	Val	Asn	Tyr	Lys	Ile	Doucet & Overall, 2010
fibronectin	P02751	32-2386	peptide-Cys2233+Gln-peptide	P	MS	Lys	Leu	Leu	Cys	Gln	Cys	Leu	Gly	Doucet & Overall, 2010
fibronectin	P02751	32-2386	peptide-Tyr240+Arg-peptide	P	MS	Arg	Thr	Ser	Tyr	Arg	Ile	Gly	Asp	Doucet & Overall, 2010
fibronectin	P02751	32-2386	peptide-Ile2134+Ser-peptide	P	MS	Glu	Tyr	Ile	Ile	Ser	Cys	His	Pro	Doucet & Overall, 2010
fibronectin	P02751	32-2386	peptide-Ile1259+Ser-peptide	P	MS	Ser	Val	Pro	Ile	Ser	Asp	Thr	Ile	Doucet & Overall, 2010
fibronectin	P02751	32-2386	peptide-Arg903+Ser-peptide	P	MS	Gly	Thr	Pro	Arg	Ser	Asp	Thr	Val	Doucet & Overall, 2010
fibronectin	P02751	32-2386	peptide-Val2212+Ser-peptide	P	MS	Pro	Tyr	Thr	Val	Ser	His	Tyr	Ala	Doucet & Overall, 2010
fibronectin	P02751	32-2386	peptide-Thr1462+Ser-peptide	P	MS	Ala	Thr	Pro	Thr	Ser	Leu	Leu	Ile	Doucet & Overall, 2010
fibronectin	P02751	32-2386	peptide-Thr1736+Ser-peptide	P	MS	Val	Thr	Pro	Thr	Ser	Leu	Ser	Ala	Doucet & Overall, 2010
fibronectin	P02751	32-2386	peptide-Ala1899+Ser-peptide	P	MS	Val	Ile	Asp	Ala	Ser	Thr	Ala	Ile	Doucet & Overall, 2010
fibronectin	P02751	32-2386	peptide-Thr773+Ser-peptide	P	MS	Ser	Thr	Ala	Thr	Ser	Val	Asn	Ile	Doucet & Overall, 2010
fibronectin	P02751	32-2386	peptide-Val738+Ser-peptide	P	MS	Ser	Phe	Val	Val	Ser	Trp	Val	Ser	Doucet & Overall, 2010
fibronectin	P02751	32-2386	peptide-Ile1870+Thr-peptide	P	MS	Ser	Tyr	Thr	Ile	Thr	Gly	Leu	Gln	Doucet & Overall, 2010
fibronectin	P02751	32-2386	peptide-Thr2345+Thr-peptide	P	MS	Pro	Glu	Gly	Thr	Thr	Gly	Gln	Ser	Doucet & Overall, 2010
fibronectin	P02751	32-2386	peptide-Thr1101+Thr-peptide	P	MS	Val	Thr	Glu	Thr	Thr	Ile	Val	Ile	Doucet & Overall, 2010
fibronectin	P02751	32-2386	peptide-Arg1835+Thr-peptide	P	MS	Ile	Ser	Trp	Arg	Thr	Lys	Thr	Glu	Doucet & Overall, 2010
fibronectin	P02751	32-2386	peptide-Thr1809+Thr-peptide	P	MS	Gly	Val	Val	Thr	Thr	Leu	Glu	Asn	Doucet & Overall, 2010
fibronectin	P02751	32-2386	peptide-Val1171+Thr-peptide	P	MS	Asn	Lys	Val	Val	Thr	Pro	Leu	Ser	Doucet & Overall, 2010
fibronectin	P02751	32-2386	peptide-Val1808+Thr-peptide	P	MS	Gln	Gly	Val	Val	Thr	Thr	Leu	Glu	Doucet & Overall, 2010
fibronectin	P02751	32-2386	peptide-Ile1105+Thr-peptide	P	MS	Thr	Ile	Val	Ile	Thr	Trp	Thr	Pro	Doucet & Overall, 2010
fibronectin	P02751	32-2386	peptide-Leu721+Val-peptide	P	MS	Phe	Ser	Pro	Leu	Val	Ala	Thr	Ser	Doucet & Overall, 2010
fibronectin	P02751	32-2386	peptide-Val1895+Val-peptide	P	MS	Ser	Ser	Pro	Val	Val	Ile	Asp	Ala	Doucet & Overall, 2010
fibronectin	P02751	32-2386	peptide-Ile1166+Val-peptide	P	MS	Asp	Ala	Pro	Ile	Val	Asn	Lys	Val	Doucet & Overall, 2010
fibronectin	P02751	32-2386	peptide-Val1170+Val-peptide	P	MS	Val	Asn	Lys	Val	Val	Thr	Pro	Leu	Doucet & Overall, 2010
fibronectin	P02751	32-2386	peptide-Thr68+Tyr-peptide	P	MS	Trp	Glu	Arg	Thr	Tyr	Leu	Gly	Asn	Doucet & Overall, 2010
fibronectin	P02751	32-2386	peptide-Ser239+Tyr-peptide	P	MS	Thr	Arg	Thr	Ser	Tyr	Arg	Ile	Gly	Doucet & Overall, 2010
fibronectin	P02751	32-2386	peptide-Ile1930+Thr-peptide	P	MS	Arg	Ala	Arg	Ile	Thr	Gly	Tyr	Ile	Doucet & Overall, 2010
fibronectin isoform 8	P02751-8	32-2296	peptide-Thr1627+Ala-peptide	P	MS	Leu	Val	Gln	Thr	Ala	Val	Thr	Thr	Doucet & Overall, 2010
fibronectin isoform 8	P02751-8	32-2296	peptide-Val1629+Thr-peptide	P	MS	Gln	Thr	Ala	Val	Thr	Thr	Ile	Pro	Doucet & Overall, 2010
Fibulin-2	P37889-1	27-1221	peptide-Ala224+Ala-peptide	P	NT	Gly	Pro	Pro	Ala	Ala	Leu	Ser	Pro	Sasaki et al., 1996
Fibulin-2	P37889-1	27-1221	peptide-Val416+His-peptide	P	NT	Pro	Asn	Ser	Val	His	Ser	Val	Pro	Sasaki et al., 1996
Fibulin-2	P37889-1	27-1221	peptide-Leu578+Ser-peptide	P	NT	Arg	Glu	Ala	Leu	Ser	Leu	Gly	Thr	Sasaki et al., 1996
Fibulin-2	P37889-1	27-1221	peptide-Ala656+Gln-peptide	P	NT	Ser	Glu	Ser	Ala	Gln	Val	Ser	Pro	Sasaki et al., 1996
fibulin-2	P37889	27-1221	peptide-Ala351+Ala-peptide	P	NT	Ser	Gly	Leu	Ala	Ala	Leu	Ser	Pro	Sasaki et al., 1996
FK506-binding protein 3	Q00688	56-70	DHLV+TAYNHLFETK	N	MS	Asp	His	Leu	Val	Thr	Ala	Tyr	Asn	Schilling & Overall, 2008
flagellin	P06179	2-495	peptide-Ile50+Ala-peptide	P		Gly	Gln	Ala	Ile	Ala	Asn	Arg	Phe	L�pez-Boado et al., 2004	21634
fructose-bisphosphate aldolase A	P04075	153-173	IGEHTPS+ALAIMENANVLAR	N	MS	His	Thr	Pro	Ser	Ala	Leu	Ala	Ile	Schilling & Overall, 2008
fumarylacetoacetate hydrolase domain-containing protein 2A	Q96GK7	33-64	peptide-Ile53+Asn-peptide	N	MS	Gly	Gly	Val	Ile	Asn	Leu	Asn	Ala	Schilling & Overall, 2008
fumarylacetoacetate hydrolase domain-containing protein 2B	Q6P2I3	33-64	peptide-Ile53+Asn-peptide	N	MS	Gly	Gly	Val	Ile	Asn	Leu	Asn	Ala	Schilling & Overall, 2008
gamma-enolase	P09104	32-50	AAVPSGA+STGIYEALELR	N	MS	Pro	Ser	Gly	Ala	Ser	Thr	Gly	Ile	Schilling & Overall, 2008
glucosidase 2 subunit beta precursor	P14314	355-374	MPPYDEQT+QAFIDAAQEAR	N	MS	Asp	Glu	Gln	Thr	Gln	Ala	Phe	Ile	Schilling & Overall, 2008
glyceraldehyde-3-phosphate dehydrogenase	P04406	271-309	peptide-Ile301+Ala-peptide	N	MS	Gly	Ala	Gly	Ile	Ala	Leu	Asn	Asp	Schilling & Overall, 2008
glyceraldehyde-3-phosphate dehydrogenase	P04406	118-145	peptide-Val132+Met-peptide	N	MS	Pro	Met	Phe	Val	Met	Gly	Val	Asn	Schilling & Overall, 2008
glyceraldehyde-3-phosphate dehydrogenase	P04406	146-162	ISNA+SCTTNCLAPLAK	N	MS	Ile	Ser	Asn	Ala	Ser	Cys	Thr	Thr	Schilling & Overall, 2008
glyoxylate reductase/hydroxypyruvate reductase	Q9UBQ7	76-94	VISTMSV+GIDHLALDEIK	N	MS	Thr	Met	Ser	Val	Gly	Ile	Asp	His	Schilling & Overall, 2008
GRHPR protein	Q5M7Z5	89-107	VISTMSV+GIDHLALDEIK	N	MS	Thr	Met	Ser	Val	Gly	Ile	Asp	His	Schilling & Overall, 2008
GTP-binding nuclear protein Ran	P62826	56-71	GPI+KFNVWDTAGQEK	N	MS	-	Gly	Pro	Ile	Lys	Phe	Asn	Val	Schilling & Overall, 2008
heat shock 70 kDa protein 1	P08107	597-628	peptide-Ala614+Gly-peptide	N	MS	Tyr	Gln	Gly	Ala	Gly	Gly	Pro	Gly	Schilling & Overall, 2008
heat shock 70 kDa protein 1	P08107	597-628	peptide-Ser608+Gly-peptide	N	MS	Pro	Ile	Ile	Ser	Gly	Leu	Tyr	Gln	Schilling & Overall, 2008
heat shock 70 kDa protein 1	P08107	597-628	peptide-Ile606+Ile-peptide	N	MS	Cys	Asn	Pro	Ile	Ile	Ser	Gly	Leu	Schilling & Overall, 2008
heat shock 70 kDa protein 1	P08107	573-595	peptide-Val577+Ile-peptide	N	MS	Cys	Gln	Glu	Val	Ile	Ser	Trp	Leu	Schilling & Overall, 2008
heat shock 70 kDa protein 1	P08107	236-247	LV+NHFVEEFKR	N	MS	-	-	Leu	Val	Asn	His	Phe	Val	Schilling & Overall, 2008
heat shock 70 kDa protein 1	P08107	88-102	HWPF+QVINDGDKPK	N	MS	His	Trp	Pro	Phe	Gln	Val	Ile	Asn	Schilling & Overall, 2008
heat shock 70 kDa protein 1	P08107	597-628	peptide-Ile607+Ser-peptide	N	MS	Asn	Pro	Ile	Ile	Ser	Gly	Leu	Tyr	Schilling & Overall, 2008
heat shock 70 kDa protein 1	P08107	573-589	CQEVI+SWLDANTLAEK	N	MS	Gln	Glu	Val	Ile	Ser	Trp	Leu	Asp	Schilling & Overall, 2008
heat shock protein 90Bd	Q58FF6	155-171	VILHL+KEDQTEYLEER	N	MS	Ile	Leu	His	Leu	Lys	Glu	Asp	Gln	Schilling & Overall, 2008
heat shock protein 90Bd	Q58FF6	17-31	ELI+SNASDALDKIR	N	MS	-	Glu	Leu	Ile	Ser	Asn	Ala	Ser	Schilling & Overall, 2008
heat shock protein HSP 90-beta	P08238	180-196	VILHL+KEDQTEYLEER	N	MS	Ile	Leu	His	Leu	Lys	Glu	Asp	Gln	Schilling & Overall, 2008
heat shock protein HSP 90-beta	P08238	411-428	CLELF+SELAEDKENYKK	N	MS	Leu	Glu	Leu	Phe	Ser	Glu	Leu	Ala	Schilling & Overall, 2008
heat shock protein HSP 90-beta	P08238	41-55	ELI+SNASDALDKIR	N	MS	-	Glu	Leu	Ile	Ser	Asn	Ala	Ser	Schilling & Overall, 2008
heat shock protein HSP 90-beta 2, putative	Q58FF8	42-55	ELI+SNASDALDKIR	N	MS	-	Glu	Leu	Ile	Ser	Asn	Ala	Ser	Schilling & Overall, 2008
heparin cofactor 2	P05546	20-499	peptide-Val458+Gly-peptide	P		Val	Thr	Thr	Val	Gly	Phe	Met	Pro	Pratt et al., 1990	3322
heparin cofactor 2	P05546	20-499	peptide-Ile85+Phe-peptide	P		Leu	Glu	Lys	Ile	Phe	Ser	Glu	Asp	Pratt et al., 1990	3321
hepatoma-derived growth factor	P51858	180-197	EAA+TLEVERPLPMEVEK	N	MS	-	Glu	Ala	Ala	Thr	Leu	Glu	Val	Schilling & Overall, 2008
Heterogeneous nuclear ribonucleoprotein A1	P09651	107-122	FV+GGIKEDTEEHHLR	N	MS	-	-	Phe	Val	Gly	Gly	Ile	Lys	Schilling & Overall, 2008
Heterogeneous nuclear ribonucleoprotein A1	P09651	146-161	GFAFV+TFDDHDSVDK	N	MS	Phe	Ala	Phe	Val	Thr	Phe	Asp	Asp	Schilling & Overall, 2008
heterogeneous nuclear ribonucleoprotein A1-like protein	Q32P51	107-122	FV+GGIKEDTEEHHLR	N	MS	-	-	Phe	Val	Gly	Gly	Ile	Lys	Schilling & Overall, 2008
heterogeneous nuclear ribonucleoprotein A1-like protein	Q32P51	146-161	GFAFV+TFDDHDSVDK	N	MS	Phe	Ala	Phe	Val	Thr	Phe	Asp	Asp	Schilling & Overall, 2008
heterogeneous nuclear ribonucleoprotein L	P14866	553-568	SDALETL+GFLNHYQMK	N	MS	Leu	Glu	Thr	Leu	Gly	Phe	Leu	Asn	Schilling & Overall, 2008
heterogeneous nuclear ribonucleoprotein U-like protein 2	Q1KMD3	62-152	peptide-Thr135+Ala-peptide	N	MS	Ala	Glu	Ala	Thr	Ala	Gly	Ser	Gly	Schilling & Overall, 2008
heterogeneous nuclear ribonucleoproteins A2/B1	P22626	115-129	FV+GGIKEDTEEHHLR	N	MS	-	-	Phe	Val	Gly	Gly	Ile	Lys	Schilling & Overall, 2008
heterogeneous nuclear ribonucleoproteins A2/B1	P22626	23-38	LFI+GGLSFETTEESLR	N	MS	-	Leu	Phe	Ile	Gly	Gly	Leu	Ser	Schilling & Overall, 2008
heterogeneous nuclear ribonucleoproteins A2/B1	P22626	154-168	GFGFV+TFDDHDPVDK	N	MS	Phe	Gly	Phe	Val	Thr	Phe	Asp	Asp	Schilling & Overall, 2008
histidyl-tRNA synthetase, cytoplasmic	P12081	266-288	peptide-Val277+Ser-peptide	N	MS	His	Gly	Gly	Val	Ser	Leu	Val	Glu	Schilling & Overall, 2008
histone H1.2	P16403	1-21	SETAPAAPA+AAPPAEKAPVK	N	MS	Ala	Ala	Pro	Ala	Ala	Ala	Pro	Pro	Schilling & Overall, 2008
histone H2A.Z	P0C0S5	102-116	ATI+AGGGVIPHIHK	N	MS	-	Ala	Thr	Ile	Ala	Gly	Gly	Gly	Schilling & Overall, 2008
histone H2A.Z	P0C0S5	85-102	HLQLA+IRGDEELDSLIK	N	MS	Leu	Gln	Leu	Ala	Ile	Arg	Gly	Asp	Schilling & Overall, 2008
histone H2A.Z	P0C0S5	85-102	HLQLAI+RGDEELDSLIK	N	MS	Gln	Leu	Ala	Ile	Arg	Gly	Asp	Glu	Schilling & Overall, 2008
histone H2AV	Q71UI9	102-116	ATI+AGGGVIPHIHK	N	MS	-	Ala	Thr	Ile	Ala	Gly	Gly	Gly	Schilling & Overall, 2008
histone H2AV	Q71UI9	85-102	HLQLA+IRGDEELDSLIK	N	MS	Leu	Gln	Leu	Ala	Ile	Arg	Gly	Asp	Schilling & Overall, 2008
histone H2AV	Q71UI9	85-102	HLQLAI+RGDEELDSLIK	N	MS	Gln	Leu	Ala	Ile	Arg	Gly	Asp	Glu	Schilling & Overall, 2008
histone H2B	P62807	60-73	MGI+MNSFVNDIFER	N	MS	-	Met	Gly	Ile	Met	Asn	Ser	Phe	Schilling & Overall, 2008
histone H2B	P62807	60-73	MGIMN+SFVNDIFER	N	MS	Gly	Ile	Met	Asn	Ser	Phe	Val	Asn	Schilling & Overall, 2008
histone H2B type 1-B	P33778	59-73	MGI+MNSFVNDIFER	N	MS	-	Met	Gly	Ile	Met	Asn	Ser	Phe	Schilling & Overall, 2008
histone H2B type 1-B	P33778	59-73	MGIMN+SFVNDIFER	N	MS	Gly	Ile	Met	Asn	Ser	Phe	Val	Asn	Schilling & Overall, 2008
histone H2B type 1-C/E/F/G/I	P62807	59-73	MGI+MNSFVNDIFER	N	MS	-	Met	Gly	Ile	Met	Asn	Ser	Phe	Schilling & Overall, 2008
histone H2B type 1-C/E/F/G/I	P62807	59-73	MGIMN+SFVNDIFER	N	MS	Gly	Ile	Met	Asn	Ser	Phe	Val	Asn	Schilling & Overall, 2008
histone H2B type 1-D	P58876	59-73	MGI+MNSFVNDIFER	N	MS	-	Met	Gly	Ile	Met	Asn	Ser	Phe	Schilling & Overall, 2008
histone H2B type 1-D	P58876	59-73	MGIMN+SFVNDIFER	N	MS	Gly	Ile	Met	Asn	Ser	Phe	Val	Asn	Schilling & Overall, 2008
histone H2B type 1-H	Q93079	59-73	MGI+MNSFVNDIFER	N	MS	-	Met	Gly	Ile	Met	Asn	Ser	Phe	Schilling & Overall, 2008
histone H2B type 1-H	Q93079	59-73	MGIMN+SFVNDIFER	N	MS	Gly	Ile	Met	Asn	Ser	Phe	Val	Asn	Schilling & Overall, 2008
histone H2B type 1-J	P06899	59-73	MGI+MNSFVNDIFER	N	MS	-	Met	Gly	Ile	Met	Asn	Ser	Phe	Schilling & Overall, 2008
histone H2B type 1-J	P06899	59-73	MGIMN+SFVNDIFER	N	MS	Gly	Ile	Met	Asn	Ser	Phe	Val	Asn	Schilling & Overall, 2008
histone H2B type 1-K	O60814	59-73	MGI+MNSFVNDIFER	N	MS	-	Met	Gly	Ile	Met	Asn	Ser	Phe	Schilling & Overall, 2008
histone H2B type 1-K	O60814	59-73	MGIMN+SFVNDIFER	N	MS	Gly	Ile	Met	Asn	Ser	Phe	Val	Asn	Schilling & Overall, 2008
histone H2B type 1-L	Q99880	59-73	MGI+MNSFVNDIFER	N	MS	-	Met	Gly	Ile	Met	Asn	Ser	Phe	Schilling & Overall, 2008
histone H2B type 1-L	Q99880	59-73	MGIMN+SFVNDIFER	N	MS	Gly	Ile	Met	Asn	Ser	Phe	Val	Asn	Schilling & Overall, 2008
histone H2B type 1-M	Q99879	59-73	MGI+MNSFVNDIFER	N	MS	-	Met	Gly	Ile	Met	Asn	Ser	Phe	Schilling & Overall, 2008
histone H2B type 1-M	Q99879	59-73	MGIMN+SFVNDIFER	N	MS	Gly	Ile	Met	Asn	Ser	Phe	Val	Asn	Schilling & Overall, 2008
histone H2B type 1-N	Q99877	59-73	MGI+MNSFVNDIFER	N	MS	-	Met	Gly	Ile	Met	Asn	Ser	Phe	Schilling & Overall, 2008
histone H2B type 1-N	Q99877	59-73	MGIMN+SFVNDIFER	N	MS	Gly	Ile	Met	Asn	Ser	Phe	Val	Asn	Schilling & Overall, 2008
histone H2B type 1-O	P23527	59-73	MGI+MNSFVNDIFER	N	MS	-	Met	Gly	Ile	Met	Asn	Ser	Phe	Schilling & Overall, 2008
histone H2B type 1-O	P23527	59-73	MGIMN+SFVNDIFER	N	MS	Gly	Ile	Met	Asn	Ser	Phe	Val	Asn	Schilling & Overall, 2008
histone H2B type 2-E	Q16778	59-73	MGI+MNSFVNDIFER	N	MS	-	Met	Gly	Ile	Met	Asn	Ser	Phe	Schilling & Overall, 2008
histone H2B type 2-E	Q16778	59-73	MGIMN+SFVNDIFER	N	MS	Gly	Ile	Met	Asn	Ser	Phe	Val	Asn	Schilling & Overall, 2008
histone H2B type 2-F	Q5QNW6	59-73	MGI+MNSFVNDIFER	N	MS	-	Met	Gly	Ile	Met	Asn	Ser	Phe	Schilling & Overall, 2008
histone H2B type 2-F	Q5QNW6	59-73	MGIMN+SFVNDIFER	N	MS	Gly	Ile	Met	Asn	Ser	Phe	Val	Asn	Schilling & Overall, 2008
histone H2B type 3-B	Q8N257	59-73	MGI+MNSFVNDIFER	N	MS	-	Met	Gly	Ile	Met	Asn	Ser	Phe	Schilling & Overall, 2008
histone H2B type 3-B	Q8N257	59-73	MGIMN+SFVNDIFER	N	MS	Gly	Ile	Met	Asn	Ser	Phe	Val	Asn	Schilling & Overall, 2008
histone H2B type F-S	P57053	59-73	MGI+MNSFVNDIFER	N	MS	-	Met	Gly	Ile	Met	Asn	Ser	Phe	Schilling & Overall, 2008
histone H2B type F-S	P57053	59-73	MGIMN+SFVNDIFER	N	MS	Gly	Ile	Met	Asn	Ser	Phe	Val	Asn	Schilling & Overall, 2008
histone-binding protein RBBP7	Q16576	196-211	DDHTV+CLWDINAGPK	N	MS	Asp	His	Thr	Val	Cys	Leu	Trp	Asp	Schilling & Overall, 2008
histone-binding protein RBBP7	Q16576	142-171	peptide-Thr154+Lys-peptide	N	MS	Phe	Asp	Tyr	Thr	Lys	His	Pro	Ala	Schilling & Overall, 2008
Hyaluronan and proteoglycan link protein 1	P10915	16-354	Peptide-Ile32+Gln-Peptide	N	NT	Ala	Ile	His	Ile	Gln	Ala	Glu	Asn	Nguyen et al., 1991
IgG1 heavy chain (hinge region)	P01857	1-330	peptide-Thr5+His-peptide	P		Cys	Asp	Lys	Thr	His	Thr	Cys	Pro	Ryan et al., 2008	20260
insulin B-chain (oxidized)	P01317	25-54	Phe-Val-Asn-Gln-His-Leu-Cya+Gly-Ser-His-Leu-Val-Glu-Ala-Leu-Tyr-Leu-Val-Cya-Gly-Glu-Arg-Gly-Phe-Phe-Tyr-Thr-Pro-Lys-Ala	N		Val	His	Leu	Cya	Gly	Ser	His	Ser	Bieth, 2004
insulin B-chain (oxidized)	P01317	25-54	Phe-Val-Asn-Gln-His-Leu-Cya-Gly-Ser+His-Leu-Val-Glu-Ala-Leu-Tyr-Leu-Val-Cya-Gly-Glu-Arg-Gly-Phe-Phe-Tyr-Thr-Pro-Lys-Ala	N		Leu	Cya	Gly	Ser	His	Leu	Val	Glu	Bieth, 2004
insulin B-chain (oxidized)	P01317	25-54	Phe-Val-Asn-Gln-His-Leu-Cya-Gly-Ser-His-Leu-Val+Glu-Ala-Leu-Tyr-Leu-Val-Cya-Gly-Glu-Arg-Gly-Phe-Phe-Tyr-Thr-Pro-Lys-Ala	N		Ser	His	Leu	Val	Glu	Ala	Leu	Tyr	Bieth, 2004
insulin B-chain (oxidized)	P01317	25-54	Phe-Val-Asn-Gln-His-Leu-Cya-Gly-Ser-His-Leu-Val-Glu-Ala+Leu-Tyr-Leu-Val-Cya-Gly-Glu-Arg-Gly-Phe-Phe-Tyr-Thr-Pro-Lys-Ala	N		Leu	Val	Glu	Ala	Leu	Tyr	Leu	Val	Bieth, 2004
insulin B-chain (oxidized)	P01317	25-54	Phe-Val-Asn-Gln-His-Leu-Cya-Gly-Ser-His-Leu-Val-Glu-Ala-Leu-Tyr-Leu-Val+Cya-Gly-Glu-Arg-Gly-Phe-Phe-Tyr-Thr-Pro-Lys-Ala	N		Leu	Tyr	Leu	Val	Cya	Gly	Glu	Arg	Bieth, 2004
insulin B-chain (oxidized)	P01317	25-54	Phe-Val-Asn-Gln-His-Leu-Cya-Gly-Ser-His-Leu-Val-Glu-Ala-Leu+Tyr-Leu-Val-Cya-Gly-Glu-Arg-Gly-Phe-Phe-Tyr-Thr-Pro-Lys-Ala	N		Val	Glu	Ala	Leu	Tyr	Leu	Val	Cya	Wiesner et al., 2005
insulin-like growth factor binding protein 3	P17936	28-291	peptide-Ile175+Lys-peptide	P		Ile	Ile	Ile	Ile	Lys	Lys	Gly	His	Gibson & Cohen, 1999
insulin-like growth factor binding protein 3	P17936	28-291	peptide-Val235+His-peptide	P		Pro	Arg	Gly	Val	His	Ile	Pro	Asn	Gibson & Cohen, 1999
interleukin-1 beta precursor	P01584	1-269	peptide-Tyr113+Val-peptide	P		Asn	Glu	Ala	Tyr	Val	His	Asp	Ala	Hazuda et al., 1990	19856
IpaB IpaB, secreted by the Mxi-Spa secretion machinery, required for entry into epithelial cells	P18011	1-580	peptide-Thr54+Asn-peptide	P		Ile	Asn	Thr	Thr	Asn	Ala	His	Ser	Averhoff et al., 2008	20904
IpaB IpaB, secreted by the Mxi-Spa secretion machinery, required for entry into epithelial cells	P18011	1-580	peptide-Thr59+Ser-peptide	P		Ala	His	Ser	Thr	Ser	Asn	Ile	Leu	Averhoff et al., 2008	20905
IpaB IpaB, secreted by the Mxi-Spa secretion machinery, required for entry into epithelial cells	P18011	1-580	peptide-Val260+Gly-peptide	P		Ile	Gln	Leu	Val	Gly	Lys	Asn	Asn	Averhoff et al., 2008	20906
IpaB IpaB, secreted by the Mxi-Spa secretion machinery, required for entry into epithelial cells	P18011	1-580	peptide-Ala273+Leu-peptide	P		Asn	Asp	Leu	Ala	Leu	Phe	Gln	Ser	Averhoff et al., 2008	20907
IpaB IpaB, secreted by the Mxi-Spa secretion machinery, required for entry into epithelial cells	P18011	1-580	peptide-Ala353+Thr-peptide	P		Val	Gln	Ala	Ala	Thr	Gly	Asn	Ser	Averhoff et al., 2008	20908
IpaB IpaB, secreted by the Mxi-Spa secretion machinery, required for entry into epithelial cells	P18011	1-580	peptide-Ile461+Thr-peptide	P		Asp	Asp	Leu	Ile	Thr	Asn	Ala	Val	Averhoff et al., 2008	20909
IpaB IpaB, secreted by the Mxi-Spa secretion machinery, required for entry into epithelial cells	P18011	1-580	peptide-Ile480+Ser-peptide	P		Asp	Glu	Val	Ile	Ser	Lys	Gln	Ile	Averhoff et al., 2008	20910
isoleucyl-tRNA synthetase, mitochondrial precursor	Q9NSE4	61-74	DTV+LLPQTSFPMK	N	MS	-	Asp	Thr	Val	Leu	Leu	Pro	Gln	Schilling & Overall, 2008
karatin, type I cytoskeletal 18	P05783	55-81	peptide-Thr65+Gly-peptide	N	MS	Gly	Leu	Ala	Thr	Gly	Ile	Ala	Gly	Schilling & Overall, 2008
kininogen-1	P01042	19-644	peptide-Ile375+Gly-peptide	P		Ser	Ser	Arg	Ile	Gly	Glu	Ile	Lys	Imamura et al., 2004
kininogen-1	P01042	19-644	peptide-Ile358+Ser-peptide	P		Leu	Gly	Met	Ile	Ser	Leu	Met	Lys	Imamura et al., 2004
lamin-B1	P20700	547-577	peptide-Ala561+Gly-peptide	N	MS	Glu	Glu	Ala	Ala	Gly	Val	Val	Val	Schilling & Overall, 2008
laminin subunit alpha-1	P19137	25-3084	peptide-Arg1889+Ala-peptide	P	MS	Leu	Gln	Ser	Arg	Ala	Gly	Ala	Leu	Doucet & Overall, 2010
laminin subunit alpha-1	P19137	25-3084	peptide-Val2373+Met-peptide	P	MS	Arg	Val	Lys	Val	Met	Val	Asp	Leu	Doucet & Overall, 2010
laminin subunit beta-1	P02469	22-1786	peptide-Thr1397+Cys-peptide	P	MS	Ala	Gln	Met	Thr	Cys	Gly	Thr	Pro	Doucet & Overall, 2010
laminin subunit beta-1	P02469	22-1786	peptide-Val1356+Glu-peptide	P	MS	Arg	Asp	Arg	Val	Glu	Asp	Leu	Met	Doucet & Overall, 2010
laminin subunit beta-1	P02469	22-1786	peptide-Ile137+Met-peptide	P	MS	Thr	His	Leu	Ile	Met	Thr	Phe	Lys	Doucet & Overall, 2010
laminin subunit beta-1	P02469	22-1786	peptide-Ser27+Tyr-peptide	P	MS	Pro	Glu	Phe	Ser	Tyr	Gly	Cys	Ala	Doucet & Overall, 2010
laminin subunit beta-1	P02469	22-1786	peptide-Ile982+Asp-peptide	P	MS	His	His	Asn	Ile	Asp	Thr	Thr	Asp	Doucet & Overall, 2010
laminin subunit gamma-1	P02468	34-1607	peptide-Thr1223+Ala-peptide	P	MS	Glu	Asn	Gln	Thr	Ala	Leu	Glu	Ile	Doucet & Overall, 2010
laminin subunit gamma-1	P02468	34-1607	peptide-Asn1362+Asp-peptide	P	MS	Gln	Glu	Ala	Asn	Asp	Ile	Leu	Asn	Doucet & Overall, 2010
laminin subunit gamma-1	P02468	34-1607	peptide-Ala1361+Asn-peptide	P	MS	Leu	Gln	Glu	Ala	Asn	Asp	Ile	Leu	Doucet & Overall, 2010
laminin subunit gamma-2	Q13753	596-618	peptide-Gly598+Gly-peptide	P		Pro	Gly	Phe	Gly	Gly	Pro	Asn	Cys	Mydel et al., 2008	20101
laminin subunit gamma-2	Q13753	596-618	peptide-Ala606+Phe-peptide	P		Glu	His	Gly	Ala	Phe	Ser	Cys	Pro	Mydel et al., 2008
leukocyte elastase inhibitor	P30740	1-379	peptide-Cys344+Met-peptide	P		Ala	Thr	Phe	Cys	Met	Leu	Met	Pro	Cooley et al., 2001	20493
malate dehydrogenase, cytoplasmic	P40925	179-199	NVIIWGNHSST+QYPDVNHAK	N	MS	His	Ser	Ser	Thr	Gln	Tyr	Pro	Asp	Schilling & Overall, 2008
malate dehydrogenase, mitochondrial precursor	P40926	52-74	peptide-Ile58+Ala-peptide	N	MS	Leu	Tyr	Asp	Ile	Ala	His	Thr	Pro	Schilling & Overall, 2008
matrin-3	P43243	496-515	VIHLS+NLPHSGYSDSAVLK	N	MS	Ile	His	Leu	Ser	Asn	Leu	Pro	His	Schilling & Overall, 2008
matrix metallopeptidase-2	P08253	110-660	peptide-Ala308+Met-peptide	P		Pro	Glu	Thr	Ala	Met	Ser	Thr	Val	Rice & Banda, 1995	17234
matrix metallopeptidase-2	P08253	110-660	peptide-Ala351+Asn-peptide	P		Ala	Thr	Thr	Ala	Asn	Tyr	Asp	Asp	Rice & Banda, 1995	17235
matrix metallopeptidase-2	P08253	110-660	peptide-Val436+Thr-peptide	P		Leu	Gly	Pro	Val	Thr	Pro	Glu	Ile	Rice & Banda, 1995	17236
matrix metallopeptidase-9	P14780	20-707	peptide-Val57+Ala-peptide	P	NT	Tyr	Thr	Arg	Val	Ala	Glu	Met	Arg	Jackson et al., 2010
matrix metallopeptidase-9	P14780	20-707	peptide-Ala58+Glu-peptide	P	NT	Thr	Arg	Val	Ala	Glu	Met	Arg	Gly	Jackson et al., 2010
Mca-Phe-Val-Thr-Gnf-Ser-Trp-ANB-NH2			Mca-Phe-Val-Thr-Gnf+Ser-Trp-ANB-NH2	S		-	Mca	Phe	Val	Thr	Gnf	Ser	Trp	Lesner et al., 2008
MeOSuc-Ala-Ala-Pro-Val-NHPhNO2			MeOSuc-Ala-Ala-Pro-Val+NHPhNO2	S		Ala	Ala	Pro	Val	NAN	-	-	-	Bieth, 2004
MeOSuc-Ala-Ala-Pro-Val-SBzl			MeOSuc-Ala-Ala-Pro-Val+SBzl	S		Ala	Ala	Pro	Val	SBz	-	-	-	Bieth, 2004
Metalloproteinase inhibitor 1	P01033	24-207	peptide-Val92+Cys-peptide	P		Met	Glu	Ser	Val	Cys	Gly	Tyr	Phe	Nagase et al., 1997	19542
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5	Q16718	67-92	peptide-Val80+Ile-peptide	N	MS	Leu	Glu	Glu	Val	Ile	Leu	Gln	Ala	Schilling & Overall, 2008
NCL protein	Q9BQ02	411-420	V+TLDWAKPK	N	MS	-	-	-	Val	Thr	Leu	Asp	Trp	Schilling & Overall, 2008
nestin	P48681	789-808	SLDQEI+ARPLENENQEFLK	N	MS	Asp	Gln	Glu	Ile	Ala	Arg	Pro	Leu	Schilling & Overall, 2008
nidogen-1	P10493	29-1245	peptide-Ile978+Ile-peptide	P		Ala	Lys	Val	Ile	Ile	Gly	Leu	Ala	Walker et al., 1998	26793
nidogen-1	P10493	29-1245	peptide-Ile979+Gly-peptide	P		Lys	Val	Ile	Ile	Gly	Leu	Ala	Phe	Walker et al., 1998	26794
nidogen-1	P10493	29-1245	peptide-Ala1046+Lys-peptide	P		Ile	Glu	Val	Ala	Lys	Met	Asp	Gly	Walker et al., 1998	26795
nidogen-1	P10493	29-1245	peptide-Val1055+Leu-peptide	P		Gln	Arg	Arg	Val	Leu	Phe	Asp	Thr	Walker et al., 1998	26797
nidogen-1	P10493	29-1245	peptide-Ser1091+His-peptide	P		Ile	Glu	Thr	Ser	His	Met	Asp	Gly	Walker et al., 1998	26796
nidogen-1	P10493	29-1245	peptide-Val376+Val-peptide	P		Glu	Thr	Gly	Val	Val	Phe	Ser	Tyr	Walker et al., 1998	26792
non-POU domain-containing octamer-binding protein	Q15233	207-239	peptide-Val222+Thr-peptide	N	MS	Pro	Arg	Pro	Val	Thr	Val	Glu	Pro	Schilling & Overall, 2008
nucleoside diphosphate kinase A	P15531	6-18	TFI+AIKPDGVQR	N	MS	-	Thr	Phe	Ile	Ala	Ile	Lys	Pro	Schilling & Overall, 2008
nucleoside diphosphate kinase A	P15531	88-105	VML+GETNPADSKPGTIR	N	MS	-	Val	Met	Leu	Gly	Glu	Thr	Asn	Schilling & Overall, 2008
nucleoside diphosphate kinase B	P22392	6-18	TFI+AIKPDGVQR	N	MS	-	Thr	Phe	Ile	Ala	Ile	Lys	Pro	Schilling & Overall, 2008
nucleoside diphosphate kinase B	P22392	88-105	VML+GETNPADSKPGTIR	N	MS	-	Val	Met	Leu	Gly	Glu	Thr	Asn	Schilling & Overall, 2008
nucleosome assembly protein 1-like 1	P55209	55-72	LDGLVETPT+GYIESLPR	N	MS	Glu	Thr	Pro	Thr	Gly	Tyr	Ile	Glu	Schilling & Overall, 2008
PA2G4 protein	Q05D08	202-221	VAHSFNCTPI+EGMLSHQLK	N	MS	Cys	Thr	Pro	Ile	Glu	Gly	Met	Leu	Schilling & Overall, 2008
peptidyl-prolyl cis-trans isomerase A	P62937	1-19	VNPTVF+FDIAVDGEPLGR	N	MS	Pro	Thr	Val	Phe	Phe	Asp	Ile	Ala	Schilling & Overall, 2008
peroxiredoxin-1	Q06830	168-190	peptide-Ala175+Gly-peptide	N	MS	Val	Cys	Pro	Ala	Gly	Trp	Lys	Pro	Schilling & Overall, 2008
peroxiredoxin-2	P32119	157-191	peptide-Ala174+Gly-peptide	N	MS	Val	Cys	Pro	Ala	Gly	Trp	Lys	Pro	Schilling & Overall, 2008
peroxiredoxin-4	Q13162	240-263	peptide-Ala247+Gly-peptide	N	MS	Val	Cys	Pro	Ala	Gly	Trp	Lys	Pro	Schilling & Overall, 2008
peroxiredoxin-6	P30041	108-125	ELA+ILLGMLDPAEKDEK	N	MS	-	Glu	Leu	Ala	Ile	Leu	Leu	Gly	Schilling & Overall, 2008
peroxiredoxin-6	P30041	108-125	ELAI+LLGMLDPAEKDEK	N	MS	Glu	Leu	Ala	Ile	Leu	Leu	Gly	Met	Schilling & Overall, 2008
peroxiredoxin-6	P30041	182-199	DGDSV+MVLPTIPEEEAK	N	MS	Gly	Asp	Ser	Val	Met	Val	Leu	Pro	Schilling & Overall, 2008
phenol sulfotransferase 1A5*1A possible alternative splicing form	Q1ET66	107-122	HLPL+ALLPQTLLDQK	N	MS	His	Leu	Pro	Leu	Ala	Leu	Leu	Pro	Schilling & Overall, 2008
phenol sulfotransferase 1A5*2	Q1ET65	107-122	HLPL+ALLPQTLLDQK	N	MS	His	Leu	Pro	Leu	Ala	Leu	Leu	Pro	Schilling & Overall, 2008
phenol sulfotransferase 1A5*4	Q1ET63	107-122	HLPL+ALLPQTLLDQK	N	MS	His	Leu	Pro	Leu	Ala	Leu	Leu	Pro	Schilling & Overall, 2008
phenol sulfotransferase 1A5*5	Q1ET62	107-122	HLPL+ALLPQTLLDQK	N	MS	His	Leu	Pro	Leu	Ala	Leu	Leu	Pro	Schilling & Overall, 2008
phosphatidylethanolamine-binding protein 1	P30086	7-39	peptide-Val27+Thr-peptide	N	MS	Pro	Leu	His	Val	Thr	Tyr	Ala	Gly	Schilling & Overall, 2008
phosphoglycerate kinase 1 (EC 2.7.2.3)	P00558	388-406	VSHVST+GGGASLELLEGK	N	MS	His	Val	Ser	Thr	Gly	Gly	Gly	Ala	Schilling & Overall, 2008
phosphoglycerate kinase 1 (EC 2.7.2.3)	P00558	297-322	peptide-Ala309+Gly-peptide	N	MS	Gly	Ile	Pro	Ala	Gly	Trp	Met	Gly	Schilling & Overall, 2008
phosphoglycerate kinase 1 (EC 2.7.2.3)	P00558	279-297	ITLPVDFV+TADKFDENAK	N	MS	Val	Asp	Phe	Val	Thr	Ala	Asp	Lys	Schilling & Overall, 2008
phosphoglycerate kinase 2	P07205	388-406	VSHVST+GGGASLELLEGK	N	MS	His	Val	Ser	Thr	Gly	Gly	Gly	Ala	Schilling & Overall, 2008
plastin-2	P13796	20-39	VDTDGNGYI+SFNELNDLFK	N	MS	Asn	Gly	Tyr	Ile	Ser	Phe	Asn	Glu	Schilling & Overall, 2008
poly [ADP-ribose] polymerase 1	P09874	355-394	peptide-Val380+Asn-peptide	N	MS	Pro	Ala	Ala	Val	Asn	Ser	Ser	Ala	Schilling & Overall, 2008
Poly(rC)-binding protein 2	Q15366	250-276	peptide-Ser254+His-peptide	N	MS	Met	Gln	Gln	Ser	His	Phe	Pro	Met	Schilling & Overall, 2008
probable transcription factor PML	P29590	1-882	peptide-Val442+Val-peptide	P		Pro	Met	Ala	Val	Val	Gln	Ser	Val	Lane & Ley, 2003	19507
probable transcription factor PML	P29590	1-882	peptide-Val454+Tyr-peptide	P		Pro	Val	Pro	Val	Tyr	Ala	Phe	Ser	Lane & Ley, 2003	19508
proliferating cell nuclear antigen	P12004	91-110	AEDNADTL+ALVFEAPNQEK	N	MS	Ala	Asp	Thr	Leu	Ala	Leu	Val	Phe	Schilling & Overall, 2008
proliferation-associated protein 2G4	Q9UQ80	172-191	VAHSFNCTPI+EGMLSHQLK	N	MS	Cys	Thr	Pro	Ile	Glu	Gly	Met	Leu	Schilling & Overall, 2008
protein disulfide-isomerase A4 precursor	P13667	612-629	NPV+KFEGGDRDLEHLSK	N	MS	-	Asn	Pro	Val	Lys	Phe	Glu	Gly	Schilling & Overall, 2008
protein disulfide-isomerase A4 precursor	P13667	370-391	peptide-Val376+Gln-peptide	N	MS	Met	Met	Asp	Val	Gln	Gly	Ser	Thr	Schilling & Overall, 2008
protein QIL1	Q5XKP0	43-75	peptide-Thr63+Gly-peptide	N	MS	Cys	Gln	Gln	Thr	Gly	Leu	Gln	Ile	Schilling & Overall, 2008
proteinase-activated receptor 1	P25116	27-425	peptide-Ala36+Thr-peptide	P		Ala	Thr	Asn	Ala	Thr	Leu	Asp	Pro	Loew et al., 2000	19002
proteinase-activated receptor 1	P25116	27-425	peptide-Val72+Ser-peptide	P		Tyr	Arg	Leu	Val	Ser	Ile	Asn	Lys	Loew et al., 2000	18989
proteinase-activated receptor 1	P25116	27-425	peptide-Ala86+Phe-peptide	P		Gln	Leu	Pro	Ala	Phe	Ile	Ser	Glu	Loew et al., 2000	19001
proteinase-activated receptor 1	P25116	27-425	peptide-Ile74+Asn-peptide	P		Leu	Val	Ser	Ile	Asn	Lys	Ser	Ser	Renesto et al., 1997	18990
proteinase-activated receptor 1	P25116	27-425	peptide-Arg41+Ser-peptide	P		Leu	Asp	Pro	Arg	Ser	Phe	Leu	Leu		26175
proteinase-activated receptor 2	P55085	26-397	peptide-Val76+Phe-peptide	P		Leu	Thr	Thr	Val	Phe	Leu	Pro	Ile	Loew et al., 2000	26219
proteinase-activated receptor 2	P55085	26-397	peptide-Val42+Asp-peptide	P		Ile	Gly	Lys	Val	Asp	Gly	Thr	Ser	Loew et al., 2000	26220
proteinase-activated receptor 2	P55085	26-397	peptide-Val48+Thr-peptide	P		Thr	Ser	His	Val	Thr	Gly	Lys	Gly	Loew et al., 2000	26221
proteinase-activated receptor 2	P55085	26-397	peptide-Val53+Thr-peptide	P		Gly	Lys	Gly	Val	Thr	Val	Glu	Thr	Loew et al., 2000	26222
proteinase-activated receptor 2	P55085	26-397	peptide-Val58+Phe-peptide	P		Val	Glu	Thr	Val	Phe	Ser	Val	Asp	Loew et al., 2000	26223
proteinase-activated receptor 2	P55085	26-397	peptide-Thr74+Thr-peptide	P		Gly	Lys	Leu	Thr	Thr	Val	Phe	Leu	Loew et al., 2000	26224
pulmonary surfactant-associated protein D	P35247	21-375	peptide-Pro131+Gln-peptide	P		Asn	Ile	Gly	Pro	Gln	Gly	Lys	Pro	Griese et al., 2003	19732
pulmonary surfactant-associated protein D	P35247	21-375	peptide-Val333+Tyr-peptide	P		Glu	Ser	Leu	Val	Tyr	Ser	Asn	Trp	Griese et al., 2003	19736
pulmonary surfactant-associated protein D	P35247	21-375	peptide-Val251+Glu-peptide	P		Tyr	Lys	Lys	Val	Glu	Leu	Phe	Pro	Griese et al., 2003	19733
pulmonary surfactant-associated protein D	P35247	21-375	peptide-Ala277+Gln-peptide	P		Phe	Thr	Glu	Ala	Gln	Leu	Leu	Cys	Griese et al., 2003	19734
pulmonary surfactant-associated protein D	P35247	21-375	peptide-Ala311+Phe-peptide	P		Asn	Glu	Ala	Ala	Phe	Leu	Ser	Met	Griese et al., 2003	19735
Putative elongation factor 1-alpha-like 3	Q5VTE0	219-255	peptide-Leu246+Arg-peptide	N	MS	Asp	Lys	Pro	Leu	Arg	Leu	Pro	Leu	Schilling & Overall, 2008
Putative elongation factor 1-alpha-like 3	Q5VTE0	5-20	THINIV+VIGHVDSGK	N	MS	Ile	Asn	Ile	Val	Val	Ile	Gly	His	Schilling & Overall, 2008
putative heat shock protein HSP 90-beta-3	Q58FF7	159-175	VILHL+KEDQTEYLEER	N	MS	Ile	Leu	His	Leu	Lys	Glu	Asp	Gln	Schilling & Overall, 2008
putative heat shock protein HSP 90-beta-3	Q58FF7	41-55	ELI+SNASDALDKIR	N	MS	-	Glu	Leu	Ile	Ser	Asn	Ala	Ser	Schilling & Overall, 2008
putative nucleoside diphosphate kinase	O60361	73-90	VML+GETNPADSKPGTIR	N	MS	-	Val	Met	Leu	Gly	Glu	Thr	Asn	Schilling & Overall, 2008
putative uncharacterized protein DKFZp781K1356	Q5H9R2	67-92	peptide-Val80+Ile-peptide	N	MS	Leu	Glu	Glu	Val	Ile	Leu	Gln	Ala	Schilling & Overall, 2008
putative uncharacterized protein HSPD1	Q53SE2	160-191	peptide-Ile174+Ser-peptide	N	MS	Val	Ala	Thr	Ile	Ser	Ala	Asn	Gly	Schilling & Overall, 2008
pyruvate kinase	Q504U3	3-32	peptide-Ala21+Met-peptide	N	MS	Leu	His	Ala	Ala	Met	Ala	Asp	Thr	Schilling & Overall, 2008
pyruvate kinase	Q504U3	177-211	peptide-Ile194+Met-peptide	N	MS	Ala	Asp	Cys	Ile	Met	Leu	Ser	Gly	Schilling & Overall, 2008
rab GDP dissociation inhibitor alpha	P31150	221-240	SPYLYPL+YGLGELPQGFAR	N	MS	Leu	Tyr	Pro	Leu	Tyr	Gly	Leu	Gly	Schilling & Overall, 2008
rab GDP dissociation inhibitor beta	P50395	221-240	SPYLYPL+YGLGELPQGFAR	N	MS	Leu	Tyr	Pro	Leu	Tyr	Gly	Leu	Gly	Schilling & Overall, 2008
retinoic acid receptor responder protein 2 precursor	Q99969	17-163	peptide-Ser157+Lys-peptide	P		Phe	Ala	Phe	Ser	Lys	Ala	Leu	Pro	Zabel et al., 2005
retinoic acid receptor responder protein 2 precursor	Q99969	17-163	peptide-Gly152+Gln-peptide	P		Tyr	Phe	Pro	Gly	Gln	Phe	Ala	Phe	Zabel et al., 2005
retinoic acid receptor responder protein 2 precursor	Q99969	17-163	peptide-Ala155+Phe-peptide	P		Gly	Gln	Phe	Ala	Phe	Ser	Lys	Ala	Zabel et al., 2005
ribosomal protein S3A	Q6NXR8	94-107	NCLT+NFHGMDLTR	N	MS	Asn	Cys	Leu	Thr	Asn	Phe	His	Gly	Schilling & Overall, 2008
ribosomal protein S3A	Q6NXR8	199-213	ACQSI+YPLHDVFVR	N	MS	Cys	Gln	Ser	Ile	Tyr	Pro	Leu	His	Schilling & Overall, 2008
SCNN1G sodium channel, nonvoltage-gated 1 gamma	P51170	1-649	peptide-Val193+Met-peptide	P		Ala	Ser	Asn	Val	Met	His	Ile	Glu	Passero et al., 2008	25558
serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	P30153	113-133	AISHEHSPSDLEA+HFVPLVK	N	MS	Asp	Leu	Glu	Ala	His	Phe	Val	Pro	Schilling & Overall, 2008
serpin B9	P50453	1-376	peptide-Cys342+Met-peptide	P		Ala	Glu	Cys	Cys	Met	Glu	Ser	Gly	Mahrus et al., 2004
serpin {ECO:0000313\|EMBL:AEW22118.1}	G8UQY8	1-432	peptide-Val385+Thr-peptide	P	NT	Ala	Ala	Ala	Val	Thr	Ala	Val	Glu	Ksiazek et al., 2014
serpin {ECO:0000313\|EMBL:AEW22118.1}	G8UQY8	1-432	peptide-Val388+Glu-peptide	P	NT	Val	Thr	Ala	Val	Glu	Met	Val	Lys	Ksiazek et al., 2014
SF3B1 protein	A0JLT9	252-289	peptide-Ala263+Gly-peptide	N	MS	His	Thr	Pro	Ala	Gly	Ala	Ala	Thr	Schilling & Overall, 2008
SF3B1 protein	A0PJH5	252-289	peptide-Ala263+Gly-peptide	N	MS	His	Thr	Pro	Ala	Gly	Ala	Ala	Thr	Schilling & Overall, 2008
SF3B1 protein	Q32Q20	252-289	peptide-Ala263+Gly-peptide	N	MS	His	Thr	Pro	Ala	Gly	Ala	Ala	Thr	Schilling & Overall, 2008
SF3B1 protein	Q7Z497	252-289	peptide-Ala263+Gly-peptide	N	MS	His	Thr	Pro	Ala	Gly	Ala	Ala	Thr	Schilling & Overall, 2008
sodium/potassium-transporting ATPase subunit beta-3	P54709	97-112	SDPT+SYAGYIEDLKK	N	MS	Ser	Asp	Pro	Thr	Ser	Tyr	Ala	Gly	Schilling & Overall, 2008
spike glycoprotein	P0DTC2	1-1273	peptide-Val687+Ala-peptide	P	NT	Ala	Arg	Ser	Val	Ala	Ser	Gln	Ser	Mustafa et al., 2021
spike glycoprotein	P0DTC2	1-1273	peptide-Ala688+Ser-peptide	P	NT	Arg	Ser	Val	Ala	Ser	Gln	Ser	Ile	Mustafa et al., 2021
spike glycoprotein	P59594	1-1255	peptide-Val663+Ser-peptide	P	NT	Tyr	His	Thr	Val	Ser	Leu	Leu	Arg	Mustafa et al., 2021
staphylococcal nuclease domain-containing protein 1	Q7KZF4	184-203	HFVDSHHQKPV+NAIIEHVR	N	MS	Gln	Lys	Pro	Val	Asn	Ala	Ile	Ile	Schilling & Overall, 2008
stress-70 protein, mitochondrial precursor	P38646	541-563	peptide-Val546+Ile-peptide	N	MS	Gln	Gln	Ile	Val	Ile	Gln	Ser	Ser	Schilling & Overall, 2008
stress-70 protein, mitochondrial precursor	P38646	541-563	peptide-Ile547+Gln-peptide	N	MS	Gln	Ile	Val	Ile	Gln	Ser	Ser	Gly	Schilling & Overall, 2008
Stromelysin-1	P08254	1-477	Peptide-Val75+Thr-Peptide	P	NT	Gly	Leu	Glu	Val	Thr	Gly	Lys	Leu	Benbow et al., 1996
Stromelysin-1	P08254	1-477	Peptide-Val86+Met-Peptide	P	NT	Thr	Leu	Glu	Val	Met	Arg	Lys	Pro	Benbow et al., 1996
Suc-Ala-Ala-Ala-NHMec			Suc-Ala-Ala-Ala+NHMec	S		Suc	Ala	Ala	Ala	AMC	-	-	-
Suc-Ala-Ala-Ala-NHPhNO2			Suc-Ala-Ala-Ala+NHPhNO2	S		Suc	Ala	Ala	Ala	NAN	-	-	-	Bieth, 2004
Suc-Ala-Ala-Val-NHPhNO2			Suc-Ala-Ala-Val+NHPhNO2	S		Suc	Ala	Ala	Val	NAN	-	-	-	Bieth, 2004
sulfotransferase 1A1	P50225	107-122	HLPL+ALLPQTLLDQK	N	MS	His	Leu	Pro	Leu	Ala	Leu	Leu	Pro	Schilling & Overall, 2008
sulfotransferase 1A2	P50226	107-122	HLPL+ALLPQTLLDQK	N	MS	His	Leu	Pro	Leu	Ala	Leu	Leu	Pro	Schilling & Overall, 2008
sulfotransferase family, cytosolic, 1A, phenol-preferring, member 4	Q2TAB3	107-122	HLPL+ALLPQTLLDQK	N	MS	His	Leu	Pro	Leu	Ala	Leu	Leu	Pro	Schilling & Overall, 2008
SUMO-conjugating enzyme UBC9	P63279	61-74	MLF+KDDYPSSPPK	N	MS	-	Met	Leu	Phe	Lys	Asp	Asp	Tyr	Schilling & Overall, 2008
Superoxide dismutase [Cu-Zn]	P00441	37-70	peptide-Thr59+Ser-peptide	N	MS	Ala	Gly	Cys	Thr	Ser	Ala	Gly	Pro	Schilling & Overall, 2008
Superoxide dismutase [Cu-Zn]	P00441	92-116	peptide-Ile105+Ser-peptide	N	MS	Asp	Ser	Val	Ile	Ser	Leu	Ser	Gly	Schilling & Overall, 2008
synaptic vesicle membrane protein VAT-1 homolog	Q99536	230-251	peptide-Ile238+Asp-peptide	N	MS	Thr	His	Pro	Ile	Asp	Tyr	His	Thr	Schilling & Overall, 2008
T-complex protein 1 subunit alpha	P17987	247-264	LGVQVV+ITDPEKLDQIR	N	MS	Val	Gln	Val	Val	Ile	Thr	Asp	Pro	Schilling & Overall, 2008
T-complex protein 1 subunit beta	P78371	322-342	LALVTGGEIA+STFDHPELVK	N	MS	Gly	Glu	Ile	Ala	Ser	Thr	Phe	Asp	Schilling & Overall, 2008
T-complex protein 1 subunit epsilon	P48643	483-496	EMNPA+LGIDCLHK	N	MS	Met	Asn	Pro	Ala	Leu	Gly	Ile	Asp	Schilling & Overall, 2008
T-complex protein 1 subunit gamma	P49368	266-294	peptide-Ile283+Gln-peptide	N	MS	Glu	Asp	Ile	Ile	Gln	Leu	Lys	Pro	Schilling & Overall, 2008
T-complex protein 1 subunit gamma isoform 2	P49368-2	228-256	peptide-Ile245+Gln-peptide	N	MS	Glu	Asp	Ile	Ile	Gln	Leu	Lys	Pro	Schilling & Overall, 2008
thioredoxin	P10599	36-48	MIKPF+FHSLSEK	N	MS	Ile	Lys	Pro	Phe	Phe	His	Ser	Leu	Schilling & Overall, 2008
thyroxine-binding globulin	P05543	21-415	peptide-Gln375+Pro-peptide	P		Leu	Ser	Asp	Gln	Pro	Glu	Asn	Thr	Grasberger et al., 2002	19346
tissue factor pathway inhibitor	P10646	29-304	peptide-Thr115+Thr-peptide	P		Ile	Ile	Lys	Thr	Thr	Leu	Gln	Gln	Higuchi et al., 1992	3314
transcription factor p65	Q04206	1-551	peptide-Ala339+Ser-peptide	P		Arg	Ser	Ser	Ala	Ser	Val	Pro	Lys	Preston et al., 2002	19476
transgelin-2	P37802	88-102	QMEQI+SQFLQAAER	N	MS	Met	Glu	Gln	Ile	Ser	Gln	Phe	Leu	Schilling & Overall, 2008
transitional endoplasmic reticulum ATPase	P55072	487-505	ELQELV+QYPVEHPDKFLK	N	MS	Gln	Glu	Leu	Val	Gln	Tyr	Pro	Val	Schilling & Overall, 2008
transketolase	P29401	438-456	SVPTSTV+FYPSDGVATEK	N	MS	Thr	Ser	Thr	Val	Phe	Tyr	Pro	Ser	Schilling & Overall, 2008
tubulin alpha-1A chain	Q71U36	352-370	VGI+NYQPPTVVPGGDLAK	N	MS	-	Val	Gly	Ile	Asn	Tyr	Gln	Pro	Schilling & Overall, 2008
tubulin alpha-1A chain	Q71U36	84-105	peptide-Ile93+Thr-peptide	N	MS	Glu	Gln	Leu	Ile	Thr	Gly	Lys	Glu	Schilling & Overall, 2008
tubulin alpha-1B chain	P68363	352-370	VGI+NYQPPTVVPGGDLAK	N	MS	-	Val	Gly	Ile	Asn	Tyr	Gln	Pro	Schilling & Overall, 2008
tubulin alpha-1B chain	P68363	84-105	peptide-Ile93+Thr-peptide	N	MS	Glu	Gln	Leu	Ile	Thr	Gly	Lys	Glu	Schilling & Overall, 2008
tubulin alpha-1C chain	Q9BQE3	352-370	VGI+NYQPPTVVPGGDLAK	N	MS	-	Val	Gly	Ile	Asn	Tyr	Gln	Pro	Schilling & Overall, 2008
tubulin alpha-1C chain	Q9BQE3	84-105	peptide-Ile93+Thr-peptide	N	MS	Glu	Gln	Leu	Ile	Thr	Gly	Lys	Glu	Schilling & Overall, 2008
tubulin alpha-3E chain	Q6PEY2	352-370	VGI+NYQPPTVVPGGDLAK	N	MS	-	Val	Gly	Ile	Asn	Tyr	Gln	Pro	Schilling & Overall, 2008
tubulin alpha-4A chain	P68366	352-370	VGI+NYQPPTVVPGGDLAK	N	MS	-	Val	Gly	Ile	Asn	Tyr	Gln	Pro	Schilling & Overall, 2008
tubulin alpha-4A chain	P68366	84-105	peptide-Ile93+Thr-peptide	N	MS	Glu	Gln	Leu	Ile	Thr	Gly	Lys	Glu	Schilling & Overall, 2008
Tubulin alpha-4A chain	P68366	1-448	peptide-Ile93+Thr-peptide	N	MS	Glu	Gln	Leu	Ile	Thr	Gly	Lys	Glu	Schilling & Overall, 2008
tubulin alpha-8 chain	Q9NY65	352-370	VGI+NYQPPTVVPGGDLAK	N	MS	-	Val	Gly	Ile	Asn	Tyr	Gln	Pro	Schilling & Overall, 2008
tubulin alpha-8 chain	Q9NY65	84-105	peptide-Ile93+Thr-peptide	N	MS	Glu	Gln	Leu	Ile	Thr	Gly	Lys	Glu	Schilling & Overall, 2008
tubulin beta chain	P07437	103-121	GHYTEGAELV+DSVLDVVR	N	MS	Ala	Glu	Leu	Val	Asp	Ser	Val	Leu	Schilling & Overall, 2008
tubulin beta chain	P07437	77-103	peptide-Ile84+Phe-peptide	N	MS	Phe	Gly	Gln	Ile	Phe	Arg	Pro	Asp	Schilling & Overall, 2008
tubulin beta chain	P07437	2-19	EIV+HIQAGQCGNQIGAK	N	MS	-	Glu	Ile	Val	His	Ile	Gln	Ala	Schilling & Overall, 2008
tubulin beta-2A chain	Q13885	103-121	GHYTEGAELV+DSVLDVVR	N	MS	Ala	Glu	Leu	Val	Asp	Ser	Val	Leu	Schilling & Overall, 2008
tubulin beta-2A chain	Q13885	77-103	peptide-Ile84+Phe-peptide	N	MS	Phe	Gly	Gln	Ile	Phe	Arg	Pro	Asp	Schilling & Overall, 2008
tubulin beta-2A chain	Q13885	2-19	EIV+HIQAGQCGNQIGAK	N	MS	-	Glu	Ile	Val	His	Ile	Gln	Ala	Schilling & Overall, 2008
tubulin beta-2B chain	Q9BVA1	103-121	GHYTEGAELV+DSVLDVVR	N	MS	Ala	Glu	Leu	Val	Asp	Ser	Val	Leu	Schilling & Overall, 2008
tubulin beta-2B chain	Q9BVA1	77-103	peptide-Ile84+Phe-peptide	N	MS	Phe	Gly	Gln	Ile	Phe	Arg	Pro	Asp	Schilling & Overall, 2008
tubulin beta-2B chain	Q9BVA1	2-19	EIV+HIQAGQCGNQIGAK	N	MS	-	Glu	Ile	Val	His	Ile	Gln	Ala	Schilling & Overall, 2008
tubulin beta-2C chain	P68371	103-121	GHYTEGAELV+DSVLDVVR	N	MS	Ala	Glu	Leu	Val	Asp	Ser	Val	Leu	Schilling & Overall, 2008
tubulin beta-2C chain	P68371	77-103	peptide-Ile84+Phe-peptide	N	MS	Phe	Gly	Gln	Ile	Phe	Arg	Pro	Asp	Schilling & Overall, 2008
tubulin beta-2C chain	P68371	19-46	peptide-Thr33+Gly-peptide	N	MS	Ile	Asp	Pro	Thr	Gly	Thr	Tyr	His	Schilling & Overall, 2008
tubulin beta-3 chain	Q13509	103-121	GHYTEGAELV+DSVLDVVR	N	MS	Ala	Glu	Leu	Val	Asp	Ser	Val	Leu	Schilling & Overall, 2008
tubulin beta-3 chain	Q13509	2-19	EIV+HIQAGQCGNQIGAK	N	MS	-	Glu	Ile	Val	His	Ile	Gln	Ala	Schilling & Overall, 2008
tubulin beta-4 chain	P04350	77-103	peptide-Ile84+Phe-peptide	N	MS	Phe	Gly	Gln	Ile	Phe	Arg	Pro	Asp	Schilling & Overall, 2008
tubulin beta-4 chain	P04350	19-46	peptide-Thr33+Gly-peptide	N	MS	Ile	Asp	Pro	Thr	Gly	Thr	Tyr	His	Schilling & Overall, 2008
Tubulin beta-4A chain	P04350	104-121	GHYTEGAELV+DAVLDVVR	N	MS	Ala	Glu	Leu	Val	Asp	Ala	Val	Leu	Schilling & Overall, 2008
tubulin, beta, 4 variant	Q53G92	103-121	GHYTEGAELV+DSVLDVVR	N	MS	Ala	Glu	Leu	Val	Asp	Ser	Val	Leu	Schilling & Overall, 2008
tyrosyl-tRNA synthetase, cytoplasmic	P54577	154-178	peptide-Ser162+Gly-peptide	N	MS	Pro	Leu	Leu	Ser	Gly	Leu	Leu	Tyr	Schilling & Overall, 2008
ubiquitin-conjugating enzyme E2 L3	P68036	100-122	peptide-Ile109+Ala-peptide	N	MS	Gln	Ser	Leu	Ile	Ala	Leu	Val	Asn	Schilling & Overall, 2008
ubiquitin-like modifier-activating enzyme 1	P22314	806-830	peptide-Ala817+Asn-peptide	N	MS	Leu	Gln	Ser	Ala	Asn	Ala	Ser	Val	Schilling & Overall, 2008
ubiquitinyl hydrolase-L1	P09936	83-115	peptide-Val99+Ala-peptide	N	MS	Ile	His	Ala	Val	Ala	Asn	Asn	Gln	Schilling & Overall, 2008
ubiquitinyl hydrolase-L1	P09936	83-115	peptide-Ile96+His-peptide	N	MS	Ile	Gly	Leu	Ile	His	Ala	Val	Ala	Schilling & Overall, 2008
ubiquitinyl hydrolase-L1	P09936	178-195	MPFPV+NHGASSEDTLLK	N	MS	Pro	Phe	Pro	Val	Asn	His	Gly	Ala	Schilling & Overall, 2008
ubiquitinyl hydrolase-L1	P09936	135-153	NEAI+QAAHDAVAQEGQCR	N	MS	Asn	Glu	Ala	Ile	Gln	Ala	Ala	His	Schilling & Overall, 2008
uncharacterized protein ENSP00000346598	A6NE09	136-155	ASYVNLPT+IALCNTDSPLR	N	MS	Asn	Leu	Pro	Thr	Ile	Ala	Leu	Cys	Schilling & Overall, 2008
UPF0569 transmembrane protein	Q3ZAQ7	6-18	AALN+ALQPPEFR	N	MS	Ala	Ala	Leu	Asn	Ala	Leu	Gln	Pro	Schilling & Overall, 2008
urokinase plasminogen activator surface receptor	Q03405	23-305	peptide-Val107+Thr-peptide	P		Gly	Arg	Ala	Val	Thr	Tyr	Ser	Arg	Andolfo et al., 2002	19559
urokinase-type plasminogen activator	P00749	21-431	peptide-Ile159+Ile-peptide	P		Arg	Phe	Lys	Ile	Ile	Gly	Gly	Glu	Ellis, 2004	17237
UV excision repair protein RAD23 homolog B	P54727	233-280	peptide-Thr269+Ser-peptide	N	MS	Thr	Thr	Thr	Thr	Ser	Ser	Gly	Gly	Schilling & Overall, 2008
valine--tRNA ligase	P26640	1222-1242	AASGYPV+KVPLEVQEADEAK	N	MS	Gly	Tyr	Pro	Val	Lys	Val	Pro	Leu	Schilling & Overall, 2008
vimentin	P08670	129-143	ILL+AELEQLKGQGK	N	MS	-	Ile	Leu	Leu	Ala	Glu	Leu	Glu	Schilling & Overall, 2008
vimentin	P08670	321-342	peptide-Val330+Asp-peptide	N	MS	Thr	Cys	Glu	Val	Asp	Ala	Leu	Lys	Schilling & Overall, 2008
von Willebrand factor	P04275	764-2813	Peptide-Val1607+Thr-Peptide	P	NT	Val	Tyr	Met	Val	Thr	Gly	Asn	Pro	Raife et al., 2009
von Willebrand factor	P04275	1596-1669	Peptide-Val1626+Pro-Peptide	N	MS	Ile	Gln	Val	Val	Pro	Ile	Gly	Val	Lancellotti et al., 2011
von Willebrand factor	P04275	1596-1669	Peptide-Val1604+Tyr-Peptide	N	MS	Pro	Asn	Leu	Val	Tyr	Met	Val	Thr	Lancellotti et al., 2011
von Willebrand factor	P04275	1596-1669	Peptide-Ile1628+Gly-Peptide	N	MS	Val	Val	Pro	Ile	Gly	Val	Gly	Pro	Lancellotti et al., 2011
von Willebrand factor	P04275	1596-1669	Peptide-Ile1642+Gly-Peptide	N	MS	Leu	Glu	Arg	Ile	Gly	Trp	Pro	Asn	Lancellotti et al., 2011
von Willebrand factor	P04275	1596-1669	Peptide-Ala1647+Pro-Peptide	N	MS	Trp	Pro	Asn	Ala	Pro	Ile	Leu	Ile	Lancellotti et al., 2011
von Willebrand factor	P04275	1596-1669	Peptide-Ile1649+Leu-Peptide	N	MS	Asn	Ala	Pro	Ile	Leu	Ile	Gln	Asp	Lancellotti et al., 2011
von Willebrand factor	P04275	1596-1669	Peptide-Ile1651+Gln-Peptide	N	MS	Pro	Ile	Leu	Ile	Gln	Asp	Phe	Glu	Lancellotti et al., 2011
X-ray repair cross-complementing protein 6	P12956	301-318	TFNTST+GGLLLPSDTKR	N	MS	Asn	Thr	Ser	Thr	Gly	Gly	Leu	Leu	Schilling & Overall, 2008
zinc finger protein 292	O60281	1-2723	peptide-Pro1543+Asn-peptide	N	MS	Val	Cys	His	Pro	Asn	Thr	Leu	Leu	Schilling & Overall, 2008