EMDB Solr Search Field Documentation

calculated_resolution_fsc_overfit_zone_value

FSC overfit zone resolution

Area of the overfited zone (the correlation that remains when high-resolution Fourier components in the particle stack …

calculated_resolution_fsc_randomised_0143_value

FSC 0.143 randomised resolution

Resolution estimated using the phase randomised FSC and 0.143 criterion.

calculated_resolution_fsc_randomised_05_value

FSC 0.5 randomised resolution

Resolution estimated using the phase randomised FSC and 0.5 criterion.

calculated_resolution_fsc_randomised_at_resolution_value

FSC randomised at resolution

Resolution estimated using the phase randomised FSC randomised from a resolution.

calculated_resolution_fsc_randomised_halfbit_value

FSC half-bit randomised resolution

Resolution estimated using the phase randomised FSC and half-bit criterion.

calculated_resolution_fsc_threesig_value

FSC three-sigma resolution

Resolution estimated using the FSC three-sigma criterion.

calibrated_defocus_max_value

Calibrated defocus (max)

Maximum calibrated defocus value used during imaging.

calibrated_defocus_min_value

Calibrated defocus (min)

Minimum calibrated defocus value used during imaging.

calibrated_magnification_value

Calibrated magnification

Calibrated magnification value used during image acquisition.

ccc_percentile_value

CCC percentile

ccc_relative_percentile_value

CCC relative percentile

cell

Cell

Cell type or specific cell line used in the study.

cell_a_value

Cell a (Å)

Unit cell length a (in Ångströms), aggregated from any deposited map (primary, half-map, additional, or mask).

cell_alpha_value

Cell α (°)

Unit cell angle α (in degrees), aggregated from any deposited map (primary, half-map, additional, or mask).

cell_b_value

Cell b (Å)

Unit cell length b (in Ångströms), aggregated from any deposited map (primary, half-map, additional, or mask).

cell_beta_value

Cell β (°)

Unit cell angle β (in degrees), aggregated from any deposited map (primary, half-map, additional, or mask).

cell_c_value

Cell c (Å)

Unit cell length c (in Ångströms), aggregated from any deposited map (primary, half-map, additional, or mask).

cell_gamma_value

Cell γ (°)

Unit cell angle γ (in degrees), aggregated from any deposited map (primary, half-map, additional, or mask).

chebi_name

ChEBI compound name

Name of the compound from the Chemical Entities of Biological Interest (ChEBI) database.

chebi_name_sgt

ChEBI compound name (suggest)

Name of the compound from the Chemical Entities of Biological Interest (ChEBI) database.

chembl_name

ChEMBL compound name

Name of the molecule or drug from the ChEMBL bioactivity database.

chembl_name_sgt

ChEMBL compound name (suggest)

Name of the molecule or drug from the ChEMBL bioactivity database.

chimera

Chimera

Indicates whether the molecule is a chimera (composed of parts from different sources or sequences).

chr_aberration_corrector_details

Chromatic aberration corrector details

Details of the chromatic aberration correction system used in the microscope.

citation

Citation

Aggregated citation information from both primary and secondary sources.

citation_author_name

Citation author name

Name(s) of the author(s) of the cited publication.

citation_country

Citation country

Country of the institution of the cited publication's corresponding author or publisher.

citation_editor_name

Citation editor name

Name(s) of the editor(s) of the cited publication, if applicable.

citation_external

Citation external references

External reference identifiers (e.g., DOI, PubMed ID) linked to citations.

citation_first_page

Citation first page

First page of the publication.

citation_issue

Citation issue number

Journal issue of associated citations.

citation_journal_name

Citation journal name

Name of the journal where the cited publication appeared.

citation_last_page

Citation last page

Last page of the publication.

citation_publisher_name

Citation publisher name

Name of the publisher of the cited publication.

citation_references

Citation references

Other references cited within the publication.

citation_title

Citation title

Title of the cited publication.

citation_type

Citation type

Type of citation (e.g., primary, secondary, review, dataset).

citation_volume

Citation volume number

Journal volume of associated citations.

citation_year

Citation year

Year when the cited publication was published.

city_name

Corresponding author city

City of the corresponding author's institution, extracted from the publication.

class_name

Taxonomy Class

Name of the class classification of the organism (e.g., Mammalia, Gammaproteobacteria).

composite_map

Composite map

Indicates whether the entry represents a composite map, i.e., a 3D reconstruction assembled from multiple component map…

continent_name

Corresponding author continent

Continent of the corresponding author's institution, extracted from the publication.

contour_level_value

Contour Level

Value of the contour threshold used for density visualization, aggregated from any deposited map (primary, half-map, ad…

contour_primary

Primary Contour

Boolean indicating whether this is the primary contour level, aggregated from any deposited map (primary, half-map, add…

contour_source

Contour Source

Source or method used to determine the contour level, aggregated from any deposited map (primary, half-map, additional,…

cooling_holder_cryogen

Cooling holder cryogen

Type of cryogen used in the cooling holder during specimen preparation or imaging (e.g., liquid nitrogen, liquid helium…

corr_author_first_name

Corresponding author first name

First name of the corresponding author.

corr_author_last_name

Corresponding author last name

Last name of the corresponding author.

corr_author_orcid

Corresponding author ORCID

ORCID identifier of the corresponding author.

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