EMDB Solr Search Field Documentation

author_name_sgt

Author (suggester)

Author name used for autocomplete or suggestion features.

author_orcid

Author ORCID

ORCID identifier of the author.

author_orcid_sgt

Author ORCID (suggester)

ORCID identifier used for autocomplete or suggestion features.

author_resolution

Author reported resolution

Resolution of the map as reported by the depositor.

author_resolution_fsc_0143_value

FSC 0.143 author resolution

Resolution determined from the FSC 0.143 criterion reported by the author.

author_resolution_fsc_0333_value

FSC 0.333 author resolution

Resolution determined from the FSC 0.333 criterion reported by the author.

author_resolution_fsc_05_value

FSC 0.5 author resolution

Resolution determined from the FSC 0.5 criterion reported by the author.

author_resolution_fsc_halfbit_value

FSC half-bit author resolution

Resolution determined from the FSC half-bit criterion reported by the author.

author_resolution_fsc_onebit_value

FSC one-bit author resolution

Resolution determined from the FSC one-bit criterion reported by the author.

author_resolution_fsc_threesig_value

FSC three-sigma author resolution

Resolution determined from the FSC three-sigma criterion reported by the author.

auxiliary_link

Auxiliary link

URL or reference to an external related resource.

auxiliary_link_category

Auxiliary link category

Category or type describing the auxiliary link (e.g., related publication, software, or database).

average_ccbox_value

Average CCbox

Average correlation coefficient calculated within boxed region around the model.

average_ccc_value

Average CCC

Average cross-correlation coefficient between map and model.

average_ccmask_value

Average CCmask

Average correlation coefficient within a masked region around the model.

average_ccpeaks_value

Average CCpeaks

Average correlation coefficient at peak positions.

average_ccvolume_value

Average CCvolume

Average correlation coefficient over the entire volume of the map.

average_qscore

Average Q-score

Average Q-score for the model, indicating local map-model agreement.

average_qscore_value

Average Q-score

Average Q-score for the model, indicating local map-model agreement.

average_smoc_value

Average SMOC

Average Segment-based Manders’ Overlap Coefficient between map and model.

average_value

Average Value

Mean voxel density or intensity value, aggregated from any deposited map (primary, half-map, additional, or mask).

bits_per_pixel

Bits per pixel

Number of bits used to represent each pixel or voxel in the image or map data.

buffer_component_concentration_unit

Buffer component concentration unit

Unit used to express the concentration of a buffer component (e.g., M, mM, %).

buffer_component_concentration_value

Buffer component concentration value

Numerical value of the concentration of a buffer component.

buffer_component_formula

Buffer component formula

Chemical formula of the buffer component.

buffer_component_formula_sgt

Buffer component formula (suggester)

Chemical formula of the buffer component used for autocomplete or suggestion features.

buffer_component_name

Buffer component name

Name of the chemical compound used as a buffer component.

buffer_component_name_sgt

Buffer component name (suggester)

Buffer component name used for autocomplete or suggestion features.

buffer_ph_value

Buffer pH value

Measured pH of the buffer solution used during sample preparation.

c2_aperture_diameter

C2 aperture diameter

Diameter of the second condenser aperture used during imaging.

ca_city_ft

Corresponding author city

City of the corresponding author's institution, extracted from the publication.

ca_continent_ft

Corresponding author continent

Continent of the corresponding author's institution, extracted from the publication.

ca_country_ft

Corresponding author country

Country of the corresponding author's institution, extracted from the publication.

ca_institution_ft

Corresponding author institution

Name of the corresponding author's institution, extracted from the publication.

calculated_resolution

Calculated resolution

Map resolution estimated from the validation pipeline.

calculated_resolution_fsc_0143_value

FSC 0.143 calculated resolution

Resolution estimated using the unmasked FSC and 0.143 criterion.

calculated_resolution_fsc_0333_value

FSC 0.333 calculated resolution

Resolution estimated using the unmasked FSC and 0.333 criterion.

calculated_resolution_fsc_05_value

FSC 0.5 calculated resolution

Resolution estimated using the unmasked FSC and 0.5 criterion.

calculated_resolution_fsc_corrected_0143_value

FSC 0.143 corrected resolution

Resolution estimated using the corrected FSC and 0.143 criterion

calculated_resolution_fsc_corrected_05_value

FSC 0.5 corrected resolution

Resolution estimated using the corrected FSC and 0.5 criterion

calculated_resolution_fsc_corrected_halfbit_value

FSC half-bit corrected resolution

Resolution estimated using the corrected FSC and half-bit criterion

calculated_resolution_fsc_feature_zone_value

FSC feature zone resolution

Area of the feature zone (between the standard half-map FSC and the HR-noise FSC)

calculated_resolution_fsc_halfbit_value

FSC half-bit resolution

Resolution estimated using the unmasked FSC and half-bit criterion.

calculated_resolution_fsc_masked_0143_value

FSC 0.143 masked resolution

Resolution estimated using the masked FSC and 0.143 criterion.

calculated_resolution_fsc_masked_05_value

FSC 0.5 masked resolution

Resolution estimated using the masked FSC and 0.5 criterion.

calculated_resolution_fsc_masked_halfbit_value

FSC half-bit masked resolution

Resolution estimated using the masked FSC and half-bit criterion.

calculated_resolution_fsc_onebit_value

FSC one-bit resolution

Resolution estimated using the FSC one-bit criterion.

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