EMDB (the Electron Microscopy Data Bank) is a public repository for electron cryo-microscopy maps and tomograms of macromolecular complexes and subcellular structures. It covers a variety of techniques, including single-particle analysis, electron tomography, sub-tomogram averaging, fibre diffraction and electron crystallography. More...
As of 06 December 2023, EMDB contains 31541 entries (latest entries, trends).
EMDB News
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04 October 2023: We are now providing the metadata for all EMDB entries in mmCIF files as well as the existing XML format! For more details see wwPDB news.
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02 October 2023: Kyle Morris has joined the EMDB as our new team leader! Kyle brings 10 years of first-hand experience in cryoEM to our team, from his own research, as well as work in imaging and structural biology facilities. His vision for the EMDB includes strengthening its core functions, developing connections to complementary databases, and preparing the archive for future cryoEM technologies. Kyle will build on the long-standing and dedicated work of Ardan Patwardhan and other leaders of the EMDB. Ardan will continue to focus his efforts on EMPIAR going forward.
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Structure of transcribing complex 7 (TC7), the initially transcribing complex with Pol II positioned 7nt downstream of TSS.
Cryo-EM of Vibrio cholerae toxin co-regulated pilus - asymmetric reconstruction
Structure of C-terminal half of LRRK2 bound to GZD-824 (G2019S mutant), Kinase-WD40
Rigid body fit of assembled HMPV N-RNA spiral bound to the C-terminal region of P
Time-resolved cryo-EM study of the 70S recycling by the HflX:1st intermediate
MiniCoV-ADDomer, a SARS-CoV-2 epitope presenting viral like particle
Human L-type voltage-gated calcium channel Cav1.2 (Class I) in the presence of pinaverium at 3.0 Angstrom resolution
De novo transcribing complex 15 (TC15), the early elongation complex with Pol II positioned 15nt downstream of TSS
Cryo-EM structure of the 3-HB and compound 9n-bound human HCAR2-Gi1 complex
De novo transcribing complex 13 (TC13), the early elongation complex with Pol II positioned 13nt downstream of TSS
PROTAC-mediated complex of KRAS with VHL/Elongin-B/Elongin-C/Cullin-2/Rbx1
Cryo-EM structure of human SLC15A3 (outward-facing partially occluded)
De novo transcribing complex 17 (TC17), the early elongation complex with Pol II positioned 17nt downstream of TSS
Structure of transcribing complex 3 (TC3), the initially transcribing complex with Pol II positioned 3nt downstream of TSS.
Chaetomium thermophilum pre-60S State 7 - pre-5S rotation lacking Utp30/ITS2 - composite structure
De novo transcribing complex 11 (TC11), the early elongation complex with Pol II positioned 11nt downstream of TSS
Cryo-EM structure of Fft3-nucleosome complex with Fft3 bound to SHL+2 position of the nucleosome
Human L-type voltage-gated calcium channel Cav1.2 at 2.9 Angstrom resolution
Time-resolved cryo-EM study of the 70S recycling by the HflX:2nd Intermediate
Cryo-EM map of calcium-bound mTMEM16A(ac)-L647V/I733V chloride channel at 3.29 A resolution
De novo transcribing complex 10 (TC10), the early elongation complex with Pol II positioned 10nt downstream of TSS
Structure of C-terminal half of LRRK2 bound tp GZFD-824 (G2019S mutant)
Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)
Structure of C-terminal half of LRRK2 (I2020T mutant) bound to GZD-824, ROC-COR domain
De novo transcribing complex 9 (AdML9G), the initially transcribing complex with Pol II positioned 9nt downstream of TSS
Structure of transcribing complex 6 (TC6), the initially transcribing complex with Pol II positioned 6nt downstream of TSS.
Amyloid-beta (1-40) fibrils derived from familial Dutch-type CAA patient (population A)
Structure of the RQT-bound 80S ribosome from S. cerevisiae (C2) - composite map
Human L-type voltage-gated calcium channel Cav1.2 (Class II) in the presence of pinaverium at 3.2 Angstrom resolution
Human L-type voltage-gated calcium channel Cav1.2 in the presence of calciseptine, amlodipine and pinaverium at 2.9 Angstrom resolution
De novo transcribing complex 10 (AdML10G), the early elongation complex with Pol II positioned 10nt downstream of TSS.
Structure of RQT (C1) bound to the stalled ribosome in a disome unit from S. cerevisiae - focused Refinement RQT
Structure of C-terminal half of LRRK2 (G2019S mutant) bound to GZD-824, ROC-COR domain
Time-resolved cryo-EM study of the 70S recycling by the HflX:control-apo-70S at 900ms
De novo transcribing complex 12 (TC12), the early elongation complex with Pol II positioned 12nt downstream of TSS
Structural insights into human brain gut peptide cholecystokinin receptors
Structure of neck and portal vertex of Agrobacterium phage Milano, C5 symmetry
Structure of transcribing complex 5 (TC5), the initially transcribing complex with Pol II positioned 5nt downstream of TSS.
Amyloid-beta (1-40) fibrils derived from familial Dutch-type CAA patient (population B)
Structure of transcribing complex 9 (TC9), the initially transcribing complex with Pol II positioned 9nt downstream of TSS.
Cryo-EM structure of Fft3-nucleosome complex with Fft3 bound to SHL+3 position of the nucleosome
Structure of neck with portal vertex of capsid of Agrobacterium phage Milano
Cryo-EM structure of the CRT-LESS RC-LH core complex from roseiflexus castenholzii
Structure of transcribing complex 8 (TC8), the initially transcribing complex with Pol II positioned 8nt downstream of TSS.
Local refinement of dimeric HMPV N-RNA bound to the C-terminal region of P
Structure of transcribing complex 4 (TC4), the initially transcribing complex with Pol II positioned 4nt downstream of TSS.
Prefusion structure of the PRD-0038 spike glycoprotein ectodomain trimer
Structure of RQT (C1) bound to the stalled ribosome in a disome unit from S. cerevisiae - focused Refinement 80S
Eukaryotic translation initiation factor 2B with a mutation (L516A) in the delta subunit
Structure of C-terminal half of LRRK2 (I2020T mutant) bound to GZD-824, Kinase-WD40
Outer kinetochore Dam1 protomer dimer Ndc80-Nuf2 coiled-coil complex
PRD-0038 RBD bound to Rhinolophus alcyone ACE2 (local refinement)
Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)
Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structure
Structure of the Dimeric Human CNTN2 Ig 1-6-FNIII 1-2 Domain in an Asymmetric State
Human L-type voltage-gated calcium channel Cav1.2 in the presence of calciseptine at 3.2 Angstrom resolution
Structure of the C-terminal half of LRRK2 bound to GZD-824 (I2020T mutant)
Structure of C-terminal half of LRRK2 bound to GZD-824 (I2020T mutant)
Structure of the C-terminal half of LRRK2 bound to GZD-824 (G2019S mutant)
Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)
Structure of transcribing complex 2 (TC2), the initially transcribing complex with Pol II positioned 2nt downstream of TSS.
The complex structure of Omicron BA.4 RBD with BD604, S309, and S304
Outer kinetochore Dam1 protomer monomer Ndc80-Nuf2 coiled-coil complex
Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)
De novo transcribing complex 14 (TC14), the early elongation complex with Pol II positioned 14nt downstream of TSS
Time-resolved cryo-EM study of the 70S recycling by the HflX:2nd Intermediate, 50S focused and 30S subtracted
De novo transcribing complex 16 (TC16), the early elongation complex with Pol II positioned 16nt downstream of TSS
Time-resolved cryo-EM study of the 70S recycling by the HflX:3rd Intermediate