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release_date:"2025-12-3T00:00:00Z" AND database:EMDB

Filter By

Current Database

  • EMDB [207]

Current status

  • REL [207]

Sample type

  • Complex [154]
  • Protein [115]
  • Ligand [81]
  • Cell [21]
  • Cellular component [17]
  • RNA [14]
  • Tissue [11]
  • Virus [4]
  • DNA [3]

Organism

  • Homo sapiens [137]
  • Mus musculus [18]
  • Chaetomium thermophilum [13]
  • Lama glama [9]
  • Synthetic construct [7]
  • Hepacivirus hominis [6]
  • Helicobacter pylori [4]
  • Toxoplasma gondii [4]
  • Venezuelan equine encephalitis virus [3]
  • Human coronavirus 229e [3]
  • Thermothelomyces thermophilus [3]
  • Salmonella enterica [3]
  • Sus scrofa [3]
  • Nannochloropsis oceanica [2]
  • Tetrahymena thermophila [2]
  • Halothiobacillus neapolitanus [2]
  • Bdellovibrio bacteriovorus [2]
  • Oryctolagus cuniculus [2]
  • Photorhabdus khanii [1]
  • Leptospirillum ferriphilum [1]
  • Synechocystis sp. pcc 6803 [1]
  • (no species) [1]
  • Rabbit hemorrhagic disease virus [1]
  • Alphainfluenzavirus influenzae [1]
  • Bacillus paranthracis [1]
  • Pectobacterium atrosepticum [1]
  • Candida albicans [1]
  • Gloeobacter violaceus [1]
  • Severe acute respiratory syndrome coronavirus [1]
  • Gemmatimonas groenlandica [1]
  • Chlamydomonas reinhardtii [1]
  • Porphyridium purpureum [1]
  • Chikungunya virus [1]
  • Avian orthoreovirus [1]
  • Escherichia coli [1]
  • Chromera velia [1]
  • Candida glabrata [1]
  • Escherichia coli [1]
  • Aequorea victoria [1]
  • Drosophila melanogaster [1]
  • Escherichia coli [1]

EM Method

  • Single-particle [164]
  • Subtomogram averaging [19]
  • Tomography [18]
  • Helical reconstruction [6]

Resolution

  • ≥ 2Å and < 3Å [47]
  • ≥ 3Å and < 4Å [105]
  • ≥ 4Å and < 5Å [10]
  • ≥ 5Å and < 6Å [5]
  • ≥ 6Å and < 8Å [10]
  • ≥ 8Å and < 12Å [6]
  • ≥ 12Å and < 16Å [3]
  • ≥ 20Å and < 30Å [3]

Release Date

  • 2025 [207]

Author by name

  • Shi H [21]
  • Zheng N [21]
  • Bushnell DA [13]
  • Chen DH [13]
  • Kornberg RD [13]
  • Mattoo RUH [13]
  • Tamir S [13]
  • Yu Y [13]
  • Agard DA [12]
  • Artley B [12]
  • Asuncion J [12]
  • Carragher B [12]
  • Epstein M [12]
  • Ermel UH [12]
  • Evans K [12]
  • Furukawa H [12]
  • Gadling J [12]
  • Harrington K [12]
  • Hiro F [12]
  • Hutchings J [12]
  • Hyunook K [12]
  • Kandel S [12]
  • Kang H [12]
  • Khandwala K [12]
  • Kimanius D [12]
  • Liotta DC [12]
  • List D [12]
  • Mccanny S [12]
  • Mccarthy DG [12]
  • Ni JX [12]
  • Paladugu S [12]
  • Paraan M [12]
  • Peck A [12]
  • Potter CS [12]
  • Pourroy J [12]
  • Reade W [12]
  • Schwartz J [12]
  • Silva SA [12]
  • Steigerwald R [12]
  • Traynelis SF [12]
  • Ullman EZ [12]
  • Venkatakrishnan M [12]
  • Wang ZS [12]
  • Zhao Z [12]
  • Zheng S [12]
  • Elferich J [11]
  • Gouaux E [11]
  • Kim H [11]
  • Kim J [11]
  • Lahtinen TM [11]
  • Matsui A [11]
  • Nyman M [11]
  • Roseborough A [11]
  • Spangler CJ [11]
  • Zhang R [10]
  • Ciulli A [7]
  • Crowe C [7]
  • Martinez-sanchez A [7]
  • Nguyen MD [7]
  • Rorbach J [7]
  • Sathe G [7]
  • Zhang H [7]
  • Zhang L [7]
  • Alvarez-brecht P [6]
  • Ballet S [6]
  • Basnet N [6]
  • Biertumpfel C [6]
  • Bodakuntla S [6]
  • Cada AK [6]
  • Chen H [6]
  • De Neve J [6]
  • Imami K [6]
  • Imataka H [6]
  • Ito T [6]
  • Iwasaki S [6]
  • Iwasaki W [6]
  • Kashiwagi K [6]
  • Machida K [6]
  • Matsumoto A [6]
  • Mizuno N [6]
  • Na M [6]
  • Nishimoto M [6]
  • Sakamoto A [6]
  • Shichino Y [6]
  • Taira K [6]
  • Takahashi M [6]
  • Xu F [6]
  • Xu K [6]
  • Xu Z [6]
  • Yamada Y [6]
  • Yue Y [6]
  • Zhou F [6]
  • Abdussalam A [5]
  • Antico O [5]
  • Brunsveld L [5]
  • Cossar PJ [5]
  • Delacuadra-baste A [5]
  • Ding D [5]
  • Ehses K [5]
  • Fernandez-busnadiego R [5]

Journal

  • TO BE PUBLISHED [96]
  • BIORXIV [23]
  • NATURE [18]
  • PNAS [18]
  • NAT COMMUN [14]
  • MOL CELL [13]
  • NAT METHODS [12]
  • PROTEIN CELL [6]
  • CELL REP [5]
  • J BIOL CHEM [5]
  • ACTA CRYSTALLOGR D STRUCT BIOL [3]
  • NAT STRUCT MOL BIOL [3]
  • ACTA PHARMACOL.SIN. [1]
  • ADV SCI [1]
  • EMERG MICROBES INFECT [1]
  • J FUNGI [1]
  • J STRUCT BIOL X [1]
  • LIFE METAB [1]
  • NUCLEIC ACIDS RES [1]
  • PROTEIN SCI [1]

Software

  • CRYOSPARC [110]
  • RELION [33]
  • IMOD [20]
  • CTFFIND [19]
  • MOTIONCORR2 [11]
  • CTFPHASEFLIP [5]
  • DYNAMO [5]
  • MATLAB [5]
  • WARP [5]
  • UCSF CHIMERA [2]
  • CRYO [1]
  • PHENIX [1]
  • SIMPLE [1]
  • STOPGAP [1]
  • TOMOMAN [1]

Microscope

  • TFS KRIOS [168]
  • FEI TALOS ARCTICA [13]
  • TFS GLACIOS [11]
  • FEI TITAN KRIOS [4]
  • JEOL CRYO ARM 200 [3]
  • JEOL CRYO ARM 300 [3]
  • FEI TECNAI F30 [2]
  • FEI TECNAI ARCTICA [1]
  • FEI TECNAI SPIRIT [1]
  • FEI/PHILIPS CM300FEG/HE [1]

Electron Source

  • FIELD EMISSION GUN [201]
  • OTHER [6]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [74]
  • GATAN K3 6K X 4K [51]
  • TFS FALCON 4I 4K X 4K [27]
  • FEI FALCON IV 4K X 4K [23]
  • GATAN K3 BIOCONTINUUM 6K X 4K [15]
  • FEI FALCON III 4K X 4K [10]
  • DIRECT ELECTRON APOLLO 4K X 4K [3]
  • GATAN K2 SUMMIT 4K X 4K [2]
  • DIRECT ELECTRON DE-16 4K X 4K [1]
  • GATAN K2 BASE 4K X 4K [1]
Sort by: Download
Showing 1 - 10 of 207. Page 1 of 21
Display:
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EMD-47500
Download Map
3D View
Cryo-EM structure of COP9 signalosome precatalytic state with neddylated cullin-1
Release date: Dec. 3, 2025
Resolution: 3.2 Å
EM Method: Single-particle

Shi H, Zheng N

To Be Published

EMD-47502
Download Map
3D View
Focused map of COP9 signalosome precatalytic state with neddylated cullin-1
Release date: Dec. 3, 2025
Resolution: 3.2 Å
EM Method: Single-particle

Shi H, Zheng N

To Be Published

EMD-47532
Download Map
3D View
Cryo-EM structure of COP9 signalosome
Release date: Dec. 3, 2025
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 9e5z
Q-score: 0.484

Shi H, Zheng N

To Be Published

EMD-47543
Download Map
3D View
Cryo-EM structure of COP9 signalosome deneddylation state of cullin-4A
Release date: Dec. 3, 2025
Resolution: 3.4 Å
EM Method: Single-particle

Shi H, Zheng N

To Be Published

EMD-47660
Download Map
3D View
Cryo-EM structure of CSN-N8 in complex with CSN5i-3
Release date: Dec. 3, 2025
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 9e77
Q-score: 0.476

Shi H, Zheng N

To Be Published

EMD-47663
Download Map
3D View
Cryo-EM structure of COP9 signalosome deneddylation state with cullin-5
Release date: Dec. 3, 2025
Resolution: 3.5 Å
EM Method: Single-particle

Shi H, Zheng N

To Be Published

EMD-47665
Download Map
3D View
Focused map of COP9 signalosome deneddylation state with cullin-5
Release date: Dec. 3, 2025
Resolution: 3.7 Å
EM Method: Single-particle

Shi H, Zheng N

To Be Published

EMD-47698
Download Map
3D View
Cryo-EM structure of COP9 signalosome in complex with CSN5i-3
Release date: Dec. 3, 2025
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 9e81
Q-score: 0.481

Shi H, Zheng N

To Be Published

EMD-47701
Download Map
3D View
Cryo-EM structure of COP9 signalosome deneddylation complex with cullin-2
Release date: Dec. 3, 2025
Resolution: 3.0 Å
EM Method: Single-particle

Shi H, Zheng N

To Be Published

EMD-47702
Download Map
3D View
Focused map of COP9 signalosome deneddylation complex with cullin-2
Release date: Dec. 3, 2025
Resolution: 3.0 Å
EM Method: Single-particle

Shi H, Zheng N

To Be Published

Sort by: Download
Showing 1 - 10 of 207. Page 1 of 21
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [207]

Current status

  • REL [207]

Sample type

  • Complex [154]
  • Protein [115]
  • Ligand [81]
  • Cell [21]
  • Cellular component [17]
  • RNA [14]
  • Tissue [11]
  • Virus [4]
  • DNA [3]

Organism

  • Homo sapiens [137]
  • Mus musculus [18]
  • Chaetomium thermophilum [13]
  • Lama glama [9]
  • Synthetic construct [7]
  • Hepacivirus hominis [6]
  • Helicobacter pylori [4]
  • Toxoplasma gondii [4]
  • Venezuelan equine encephalitis virus [3]
  • Human coronavirus 229e [3]
  • Thermothelomyces thermophilus [3]
  • Salmonella enterica [3]
  • Sus scrofa [3]
  • Nannochloropsis oceanica [2]
  • Tetrahymena thermophila [2]
  • Halothiobacillus neapolitanus [2]
  • Bdellovibrio bacteriovorus [2]
  • Oryctolagus cuniculus [2]
  • Photorhabdus khanii [1]
  • Leptospirillum ferriphilum [1]
  • Synechocystis sp. pcc 6803 [1]
  • (no species) [1]
  • Rabbit hemorrhagic disease virus [1]
  • Alphainfluenzavirus influenzae [1]
  • Bacillus paranthracis [1]
  • Pectobacterium atrosepticum [1]
  • Candida albicans [1]
  • Gloeobacter violaceus [1]
  • Severe acute respiratory syndrome coronavirus [1]
  • Gemmatimonas groenlandica [1]
  • Chlamydomonas reinhardtii [1]
  • Porphyridium purpureum [1]
  • Chikungunya virus [1]
  • Avian orthoreovirus [1]
  • Escherichia coli [1]
  • Chromera velia [1]
  • Candida glabrata [1]
  • Escherichia coli [1]
  • Aequorea victoria [1]
  • Drosophila melanogaster [1]
  • Escherichia coli [1]

EM Method

  • Single-particle [164]
  • Subtomogram averaging [19]
  • Tomography [18]
  • Helical reconstruction [6]

Resolution

  • ≥ 2Å and < 3Å [47]
  • ≥ 3Å and < 4Å [105]
  • ≥ 4Å and < 5Å [10]
  • ≥ 5Å and < 6Å [5]
  • ≥ 6Å and < 8Å [10]
  • ≥ 8Å and < 12Å [6]
  • ≥ 12Å and < 16Å [3]
  • ≥ 20Å and < 30Å [3]

Release Date

  • 2025 [207]

Author by name

  • Shi H [21]
  • Zheng N [21]
  • Bushnell DA [13]
  • Chen DH [13]
  • Kornberg RD [13]
  • Mattoo RUH [13]
  • Tamir S [13]
  • Yu Y [13]
  • Agard DA [12]
  • Artley B [12]
  • Asuncion J [12]
  • Carragher B [12]
  • Epstein M [12]
  • Ermel UH [12]
  • Evans K [12]
  • Furukawa H [12]
  • Gadling J [12]
  • Harrington K [12]
  • Hiro F [12]
  • Hutchings J [12]
  • Hyunook K [12]
  • Kandel S [12]
  • Kang H [12]
  • Khandwala K [12]
  • Kimanius D [12]
  • Liotta DC [12]
  • List D [12]
  • Mccanny S [12]
  • Mccarthy DG [12]
  • Ni JX [12]
  • Paladugu S [12]
  • Paraan M [12]
  • Peck A [12]
  • Potter CS [12]
  • Pourroy J [12]
  • Reade W [12]
  • Schwartz J [12]
  • Silva SA [12]
  • Steigerwald R [12]
  • Traynelis SF [12]
  • Ullman EZ [12]
  • Venkatakrishnan M [12]
  • Wang ZS [12]
  • Zhao Z [12]
  • Zheng S [12]
  • Elferich J [11]
  • Gouaux E [11]
  • Kim H [11]
  • Kim J [11]
  • Lahtinen TM [11]
  • Matsui A [11]
  • Nyman M [11]
  • Roseborough A [11]
  • Spangler CJ [11]
  • Zhang R [10]
  • Ciulli A [7]
  • Crowe C [7]
  • Martinez-sanchez A [7]
  • Nguyen MD [7]
  • Rorbach J [7]
  • Sathe G [7]
  • Zhang H [7]
  • Zhang L [7]
  • Alvarez-brecht P [6]
  • Ballet S [6]
  • Basnet N [6]
  • Biertumpfel C [6]
  • Bodakuntla S [6]
  • Cada AK [6]
  • Chen H [6]
  • De Neve J [6]
  • Imami K [6]
  • Imataka H [6]
  • Ito T [6]
  • Iwasaki S [6]
  • Iwasaki W [6]
  • Kashiwagi K [6]
  • Machida K [6]
  • Matsumoto A [6]
  • Mizuno N [6]
  • Na M [6]
  • Nishimoto M [6]
  • Sakamoto A [6]
  • Shichino Y [6]
  • Taira K [6]
  • Takahashi M [6]
  • Xu F [6]
  • Xu K [6]
  • Xu Z [6]
  • Yamada Y [6]
  • Yue Y [6]
  • Zhou F [6]
  • Abdussalam A [5]
  • Antico O [5]
  • Brunsveld L [5]
  • Cossar PJ [5]
  • Delacuadra-baste A [5]
  • Ding D [5]
  • Ehses K [5]
  • Fernandez-busnadiego R [5]

Journal

  • TO BE PUBLISHED [96]
  • BIORXIV [23]
  • NATURE [18]
  • PNAS [18]
  • NAT COMMUN [14]
  • MOL CELL [13]
  • NAT METHODS [12]
  • PROTEIN CELL [6]
  • CELL REP [5]
  • J BIOL CHEM [5]
  • ACTA CRYSTALLOGR D STRUCT BIOL [3]
  • NAT STRUCT MOL BIOL [3]
  • ACTA PHARMACOL.SIN. [1]
  • ADV SCI [1]
  • EMERG MICROBES INFECT [1]
  • J FUNGI [1]
  • J STRUCT BIOL X [1]
  • LIFE METAB [1]
  • NUCLEIC ACIDS RES [1]
  • PROTEIN SCI [1]

Software

  • CRYOSPARC [110]
  • RELION [33]
  • IMOD [20]
  • CTFFIND [19]
  • MOTIONCORR2 [11]
  • CTFPHASEFLIP [5]
  • DYNAMO [5]
  • MATLAB [5]
  • WARP [5]
  • UCSF CHIMERA [2]
  • CRYO [1]
  • PHENIX [1]
  • SIMPLE [1]
  • STOPGAP [1]
  • TOMOMAN [1]

Microscope

  • TFS KRIOS [168]
  • FEI TALOS ARCTICA [13]
  • TFS GLACIOS [11]
  • FEI TITAN KRIOS [4]
  • JEOL CRYO ARM 200 [3]
  • JEOL CRYO ARM 300 [3]
  • FEI TECNAI F30 [2]
  • FEI TECNAI ARCTICA [1]
  • FEI TECNAI SPIRIT [1]
  • FEI/PHILIPS CM300FEG/HE [1]

Electron Source

  • FIELD EMISSION GUN [201]
  • OTHER [6]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [74]
  • GATAN K3 6K X 4K [51]
  • TFS FALCON 4I 4K X 4K [27]
  • FEI FALCON IV 4K X 4K [23]
  • GATAN K3 BIOCONTINUUM 6K X 4K [15]
  • FEI FALCON III 4K X 4K [10]
  • DIRECT ELECTRON APOLLO 4K X 4K [3]
  • GATAN K2 SUMMIT 4K X 4K [2]
  • DIRECT ELECTRON DE-16 4K X 4K [1]
  • GATAN K2 BASE 4K X 4K [1]