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The Electron Microscopy Data Bank (EMDB) at PDBe

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EMDB entries with fitted PDB models
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Introduction

The Electron Microscopy Data Bank (EMDB) is a public repository for electron microscopy density maps of macromolecular complexes and subcellular structures. It covers a variety of techniques, including single-particle analysis, electron tomography, and electron (2D) crystallography.

The EMDB was founded at EBI in 2002, under the leadership of Kim Henrick. Since 2007 it has been operated jointly by the PDBe, and the Research Collaboratory for Structural Bioinformatics (RCSB PDB) as a part of EMDataBank which is funded by a joint NIH grant to PDBe, the RCSB and the National Center for Macromolecular Imaging (NCMI).


EMDataResource

A wealth of additional resources can be found at EMDataResource including:


Gallery of recent structures

15602 released maps, and 4843 associated publications. Last update: 2021-06-23 - 67 maps released this week


  1. EMD-11829
    EMD-11829
    Leishmania Major mitochondrial ribosome
  2. EMD-11894
    EMD-11894
    HIV-1 Gag immature lattice. GagdeltaMASP1T8I
  3. EMD-11897
    EMD-11897
    HIV-1 Gag immature lattice. GagSP1T8I
  4. EMD-11996
    EMD-11996
    OsBOR3
  5. EMD-12066
    EMD-12066
    Drosophila melnaogaster TRAPPII
  6. EMD-12448
    EMD-12448
    diazaborine bound Drg1(AFG2)
  7. EMD-12543
    EMD-12543
    Hantaan virus-like particle glycoprotein lattice.
  8. EMD-12544
    EMD-12544
    Hantaan virus-like particle glycoprotein spike in complex with Fab fragment HTN-Gn1.
  9. EMD-12767
    EMD-12767
    Human mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1, the MALSU module, GTPBP5 and mtEF-TU (MTG1-loaded subset)
  10. EMD-12768
    EMD-12768
    Human mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1, the MALSU module, GTPBP5 and mtEF-TU (mtEF-Tu-loaded subset)
  11. EMD-12769
    EMD-12769
    Human mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1 and the MALSU module (MTG1-loaded subset)
  12. EMD-12770
    EMD-12770
    Human mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2 and the MALSU module
  13. EMD-12845
    EMD-12845
    State A of the human mitoribosomal large subunit assembly intermediate
  14. EMD-12846
    EMD-12846
    State B of the human mitoribosomal large subunit assembly intermediate
  15. EMD-12847
    EMD-12847
    State C of the human mitoribosomal large subunit assembly intermediate
  16. EMD-12848
    EMD-12848
    State A0 of the human mitoribosomal large subunit assembly intermediate
  17. EMD-12849
    EMD-12849
    State C0 of the human mitoribosomal large subunit assembly intermediate
  18. EMD-12850
    EMD-12850
    State D0' of the human mitoribosomal large subunit assembly intermediate
  19. EMD-12851
    EMD-12851
    State D0'' of the human mitoribosomal large subunit assembly intermediate
  20. EMD-12852
    EMD-12852
    State D of the human mitoribosomal large subunit assembly intermediate
  21. EMD-12872
    EMD-12872
    Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset1).
  22. EMD-12877
    EMD-12877
    Human mitochondrial ribosome in complex with P/E-tRNA
  23. EMD-12879
    EMD-12879
    Structure of Alternanthera Mosaic VLP by cryoEM
  24. EMD-12918
    EMD-12918
    Cryo-EM structure of the Cetacean morbillivirus nucleoprotein-RNA complex
  25. EMD-12986
    EMD-12986
    Control sample rancRNA_18
  26. EMD-12988
    EMD-12988
    rancRNA_18 processing and classification
  27. EMD-12991
    EMD-12991
    SARS-CoV-2 spike subtomogram average from extracelullar viruses
  28. EMD-12992
    EMD-12992
    SARS-CoV-2 spike subtomogram average from intracelullar viruses
  29. EMD-13079
    EMD-13079
    Representative cryo-electron tomogram of HIV-1 MA-SP1 particles
  30. EMD-13080
    EMD-13080
    Representative cryo-electron tomogram of HIV-1 MA-CA particles
  31. EMD-22839
    EMD-22839
    BDBV-289 bound to EBOV GPdMuc Makona
  32. EMD-23207
    EMD-23207
    Unliganded ELIC in styrene-maleic-acid nanodiscs at 2.5-Angstrom resolution
  33. EMD-23208
    EMD-23208
    Unliganded ELIC in POPC-only nanodiscs at 3.3-Angstrom resolution
  34. EMD-23373
    EMD-23373
    Negative stain EM map of RM20C Fab in complex with edc BG505 SOSIP.664
  35. EMD-23771
    EMD-23771
    3D reconstruction generated using the locations and orientations of 5,080 50S subunits detected in 220 images using 2DTM with a M. pneumoniae 50S template
  36. EMD-23772
    EMD-23772
    3D reconstruction generated using the locations and orientations of 1,172 50S subunits detected in 220 images using 2DTM with a B. subtilis 50S template
  37. EMD-23827
    EMD-23827
    Structure of C9orf72:SMCR8:WDR41 in complex with ARF1
  38. EMD-23902
    EMD-23902
    Escherichia coli RNA polymerase core enzyme
  39. EMD-30342
    EMD-30342
    Structure of alpha6beta1 integrin in complex with laminin-511
  40. EMD-30487
    EMD-30487
    SARS-CoV-2 Spike protein in complex with hb27 and fc05 Fab cocktail
  41. EMD-30498
    EMD-30498
    Cryo-EM structure of sodium-dependent bicarbonate transporter SbtA from Synechocystis sp. PCC 6803
  42. EMD-30499
    EMD-30499
    Cryo-EM structure of bicarbonate transporter SbtA in complex with PII-like signaling protein SbtB from Synechocystis sp. PCC 6803
  43. EMD-30582
    EMD-30582
    Structure of Mycobacterium smegmatis bd complex in the apo-form.
  44. EMD-30669
    EMD-30669
    Cryo-EM structure of SARS-CoV-2 spike in complex with a neutralizing antibody chAb-25
  45. EMD-30670
    EMD-30670
    Cryo-EM structure of SARS-CoV-2 spike in complex with a neutralizing antibody chAb-45
  46. EMD-30847
    EMD-30847
    Structure of a human NHE1-CHP1 complex under pH 6.5
  47. EMD-30848
    EMD-30848
    Structure of a human NHE1-CHP1 complex under pH 7.5
  48. EMD-30849
    EMD-30849
    Structure of a human NHE1-CHP1 complex under pH 7.5, bound by cariporide
  49. EMD-30862
    EMD-30862
    Unliganded EGFR averaged cluster 5
  50. EMD-30864
    EMD-30864
    Unliganded EGFR averaged cluster 21
  51. EMD-30927
    EMD-30927
    Cryo-EM structure of Patched1 (V1084A mutant) in lipid nanodisc
  52. EMD-30929
    EMD-30929
    The negatively stained reconstruction of cytoplasmic AdeS in APO state
  53. EMD-30930
    EMD-30930
    The negatively stained reconstruction of cytoplasmic AdeS in ATP-bound state
  54. EMD-31031
    EMD-31031
    Cryo-EM structure of Gi-bound metabotropic glutamate receptor mGlu2
  55. EMD-31032
    EMD-31032
    Cryo-EM structure of Gi-bound metabotropic glutamate receptor mGlu4
  56. EMD-31047
    EMD-31047
    Cryo-EM structure of SARS-CoV-2 Spike D614G variant, one RBD-up conformation 1
  57. EMD-31048
    EMD-31048
    Cryo-EM structure of SARS-CoV-2 Spike D614G variant, one RBD-up conformation 2
  58. EMD-31050
    EMD-31050
    Cryo-EM structure of SARS-CoV-2 Spike D614G variant, one RBD-up conformation 3
  59. EMD-31051
    EMD-31051
    Cryo-EM structure of SARS-CoV-2 Spike D614G variant, two RBD-up conformation 1
  60. EMD-31052
    EMD-31052
    Cryo-EM structure of SARS-CoV-2 Spike D614G variant, two RBD-up conformation 2
  61. EMD-31053
    EMD-31053
    Cryo-EM structure of Isocitrate lyase-1 from Candida albicans
  62. EMD-31235
    EMD-31235
    Cryo-EM structure of inactive mGlu2 homodimer
  63. EMD-31236
    EMD-31236
    Cryo-EM structure of LY354740-bound mGlu2 homodimer
  64. EMD-31237
    EMD-31237
    Cryo-EM structure of inactive mGlu7 homodimer
  65. EMD-31238
    EMD-31238
    Cryo-EM structure of inactive mGlu2-7 heterodimer
  66. EMD-31303
    EMD-31303
    Cryo-EM structure of Scap/Insig complex in the present of digitonin.
  67. EMD-31361
    EMD-31361
    Structure of Mumps virus nucleocapsid ring