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EMDB Solr Search Field Documentation

virus_serocomplex_organism

Virus serocomplex

Virus serocomplex classification, grouping related serotypes.

virus_serocomplex_organism_sgt

Virus serocomplex (suggest)

Virus serocomplex classification, grouping related serotypes.

virus_serotype_organism

Virus serotype

Virus serotype classification.

virus_serotype_organism_sgt

Virus serotype (suggest)

Virus serotype classification.

virus_shell_diameter

Virus shell diameter

Diameter of the viral shell, typically in nanometers.

virus_shell_name

Virus shell name

Name or type of the viral shell (capsid or envelope structure).

virus_shell_name_sgt

Virus shell name (suggest)

Name or type of the viral shell (capsid or envelope structure).

virus_shell_triangulation_count

Virus shell triangulation number

Triangulation number (T-number) describing the geometric arrangement of capsid proteins.

virus_strain_organism

Virus strain

Strain designation of the virus organism.

virus_subspecies_organism

Virus subspecies

Virus subspecies designation, if applicable.

vitrification_chamber_humidity_value

Vitrification chamber humidity

Humidity level in the vitrification chamber during freezing.

vitrification_chamber_temperature

Vitrification chamber temperature

Temperature of the vitrification environment.

vitrification_cryogen_name

Vitrification cryogen

Cryogenic agent used for sample vitrification (e.g. ethane, propane).

vitrification_instrument

Vitrification instrument

Instrument used for vitrification (e.g. Vitrobot, Leica GP2).

vitrification_method

Vitrification method

Method used for vitrification (e.g. plunge freezing, high-pressure freezing).

vitrification_method_sgt

Vitrification method (suggest)

Method used for vitrification (e.g. plunge freezing, high-pressure freezing).

vitrification_timed_resolved_state_text

Time-resolved vitrification state

Description of the sample state captured in time-resolved experiments.

volume_distribution_mode_value

Volume distribution mode

withdrawn_date

Withdrawn date

Date when the entry was withdrawn.

xref

Cross-reference

General external cross-references to related databases.

xref_ALPHAFOLD

AlphaFold DB model ID

Identifiers linking to AlphaFold-predicted structure models related to the entry.

xref_ALPHAFOLD_sgt

AlphaFold DB model ID (suggest)

Identifiers linking to AlphaFold-predicted structure models related to the entry.

xref_ASTM

ASTM code

ASTM database identifier for related materials or standards.

xref_ASTM_sgt

ASTM code (suggest)

ASTM database identifier for related materials or standards.

xref_BIA

Related BioStudies entries

List of BioStudies entries linked to this dataset.

xref_BIOSTUDIES

BioStudies accession

Accession numbers linking the entry to related BioStudies records containing supplementary experimental data.

xref_BIOSTUDIES_sgt

BioStudies accession (suggest)

Accession numbers linking the entry to related BioStudies records containing supplementary experimental data.

xref_CARDBANK

Carbohydrate Structure Database ID

Cross-reference to entries in carbohydrate structure databases.

xref_CARDBANK_sgt

Carbohydrate Structure Database ID (suggest)

Cross-reference to entries in carbohydrate structure databases.

xref_CAS

CAS number

Chemical Abstracts Service (CAS) registry number for related compounds.

xref_CAS_sgt

CAS number (suggest)

Chemical Abstracts Service (CAS) registry number for related compounds.

xref_CATH

CATH ID

CATH domain identifiers linking to structural classification of protein domains.

xref_CATH_sgt

CATH ID (suggest)

CATH domain identifiers linking to structural classification of protein domains.

xref_CHEBI

ChEBI ID

Chemical Entities of Biological Interest (ChEBI) identifiers for molecules associated with the entry.

xref_CHEBI_sgt

ChEBI ID (suggest)

Chemical Entities of Biological Interest (ChEBI) identifiers for molecules associated with the entry.

xref_CHEMBL

ChEMBL ID

ChemBL database identifiers linking to bioactive molecule records.

xref_CHEMBL_sgt

ChEMBL ID (suggest)

ChemBL database identifiers linking to bioactive molecule records.

xref_CPX

Complex Portal ID

Identifiers linking the entry to the Complex Portal for macromolecular complex information.

xref_CPX_sgt

Complex Portal ID (suggest)

Identifiers linking the entry to the Complex Portal for macromolecular complex information.

xref_CSD

Cambridge Structural Database ID

Cross-reference to entries in the Cambridge Structural Database.

xref_CSD_sgt

Cambridge Structural Database ID (suggest)

Cross-reference to entries in the Cambridge Structural Database.

xref_DOI

DOI (Digital Object Identifier)

DOI of publications associated with the entry.

xref_DOI_sgt

DOI (Digital Object Identifier) (suggest)

DOI of publications associated with the entry.

xref_DRUGBANK

DrugBank ID

DrugBank identifiers linking the entry to known drugs or ligands.

xref_DRUGBANK_sgt

DrugBank ID (suggest)

DrugBank identifiers linking the entry to known drugs or ligands.

xref_EMDB

EMDB cross-reference

Links to other EMDB entries that are related or part of the same study.

xref_EMDB_sgt

Related EMDB entries (suggest)

List of EMDB entries linked to this dataset.

xref_EMPIAR

EMPIAR accession

Accession numbers linking the entry to raw experimental data deposited in the Electron Microscopy Public Image Archive …

xref_EMPIAR_sgt

EMPIAR accession (suggest)

Accession numbers linking the entry to raw experimental data deposited in the Electron Microscopy Public Image Archive …

xref_GENBANK

GenBank accession

GenBank accession numbers for nucleotide or protein sequences associated with the entry.

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