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EMDB Solr Search Field Documentation

synthetic_source_organ

Synthetic source organ

Organ used as synthetic source.

synthetic_source_organelle

Synthetic source organelle

Organelle used as synthetic source.

synthetic_source_organism

Synthetic source organism

Scientific name(s) of the synthetic source organism.

synthetic_source_strain_organism

Synthetic source strain

Strain of the synthetic source organism.

synthetic_source_tissue

Synthetic source tissue

Tissue used as synthetic source.

synthetically_produced

Synthetically produced

Boolean indicating whether the molecule was synthetically produced.

text

Full Text

Aggregated full-text search field combining all indexed text.

tilt_series_axis_rotation

Tilt Axis Rotation

Rotation of the tilt axis in the microscope setup.

tilt_series_axis1_increment_angle

Axis 1 Tilt Increment

Incremental tilt angle step for tilt series axis 1.

tilt_series_axis1_max_angle

Axis 1 Maximum Tilt Angle

Maximum tilt angle for tilt series axis 1.

tilt_series_axis1_min_angle

Axis 1 Minimum Tilt Angle

Minimum tilt angle for tilt series axis 1.

tilt_series_axis2_increment_angle

Axis 2 Tilt Increment

Incremental tilt angle step for tilt series axis 2.

tilt_series_axis2_max_angle

Axis 2 Maximum Tilt Angle

Maximum tilt angle for tilt series axis 2.

tilt_series_axis2_min_angle

Axis 2 Minimum Tilt Angle

Minimum tilt angle for tilt series axis 2.

tilt_series_axis2_rotation

Axis 2 Rotation

Rotation of the second tilt axis relative to the first.

tissue

Tissue

Aggregated Type of tissue used in the sample preparation.

title

Entry title

Title of the EMDB/EMPIAR entry, describing the experiment or structure.

title_sgt

Entry title (suggest)

Title of the EMDB/EMPIAR entry, describing the experiment or structure.

tomography_cryo_protectant_details

Cryo-protectant details

Description of cryo-protectant used in tomography preparation.

tomography_embedding_material

Tomography embedding material

Embedding material used for tomography (e.g. resin, ice).

tomography_embedding_material_sgt

Tomography embedding material (suggest)

Embedding material used for tomography (e.g. resin, ice).

tomography_fiducial_diameter

Fiducial marker diameter

Diameter of fiducial markers in nanometers.

tomography_fiducial_manufacturer_type

Fiducial marker manufacturer

Manufacturer of fiducial markers used.

tomography_fiducial_manufacturer_type_sgt

Fiducial marker manufacturer (suggest)

Manufacturer of fiducial markers used.

tomography_fiducial_type

Fiducial marker type

Type of fiducial markers used in tomography (e.g. gold beads, colloidal gold).

tomography_fiducial_type_sgt

Fiducial marker type (suggest)

Type of fiducial markers used in tomography (e.g. gold beads, colloidal gold).

tomography_freezing_instrument

Freezing instrument

Instrument used for high-pressure freezing during tomography.

total_number_images

Total number of images

Total number of images or tilt series in the entire dataset.

update_date

Update date

Date when the entry was last updated.

virus_category

Virus category

General virus type or category (e.g. enveloped, icosahedral, filamentous).

virus_empty

Virus empty capsid

Boolean or descriptive field indicating if the virus particle is empty (lacking genetic material).

virus_enveloped

Virus enveloped

Boolean or descriptive field indicating if the virus is enveloped.

virus_host_recombinant_ncbi_code

Virus recombinant host NCBI taxonomy code

NCBI taxonomy identifier of the recombinant host organism.

virus_host_recombinant_ncbi_code_sgt

Virus recombinant host NCBI taxonomy code (suggest)

NCBI taxonomy identifier of the recombinant host organism.

virus_host_recombinant_organism

Virus recombinant host organism

Organism used for recombinant expression of viral components.

virus_host_recombinant_organism_sgt

Virus recombinant host organism (suggest)

Organism used for recombinant expression of viral components.

virus_host_recombinant_strain_cell

Virus recombinant host cell

Cell line used for recombinant viral expression.

virus_host_recombinant_strain_cell_sgt

Virus recombinant host cell (suggest)

Cell line used for recombinant viral expression.

virus_host_recombinant_strain_organism

Virus recombinant host strain

Strain of the organism used for recombinant viral expression.

virus_host_recombinant_strain_organism_sgt

Virus recombinant host strain (suggest)

Strain of the organism used for recombinant viral expression.

virus_host_recombinant_strain_plasmid

Virus recombinant host plasmid

Plasmid or vector used for recombinant viral expression.

virus_host_recombinant_strain_plasmid_sgt

Virus recombinant host plasmid (suggest)

Plasmid or vector used for recombinant viral expression.

virus_isolate

Virus isolate

Specific isolate identifier or description of the virus sample.

virus_natural_host_ncbi_code

Virus natural host NCBI taxonomy code

NCBI taxonomy identifier of the natural host organism.

virus_natural_host_ncbi_code_sgt

Virus natural host NCBI taxonomy code (suggest)

NCBI taxonomy identifier of the natural host organism.

virus_natural_host_organism

Virus natural host organism

Scientific or synonym name of the natural host organism infected by the virus.

virus_natural_host_organism_sgt

Virus natural host organism (suggest)

Scientific or synonym name of the natural host organism infected by the virus.

virus_natural_host_strain_organism

Virus natural host strain

Strain designation of the virus’s natural host organism.

virus_ncbi_code

Virus NCBI taxonomy code

NCBI taxonomy identifier of the virus organism.

virus_organism

Virus organism

Scientific or synonym name of the virus organism associated with the entry.

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