EMDB Solr Search Field Documentation

site

Site

Deposition, annotation, last processing and current site aggregated.

slice_average_value

Slice average value

The mean density value across the slice map.

slice_cell_a_value

Slice cell dimension A

The unit cell length of the slice map along the A axis (in Å).

slice_cell_alpha

Slice cell angle α

The unit cell angle alpha of the slice map (in degrees).

slice_cell_b_value

Slice cell dimension B

The unit cell length of the slice map along the B axis (in Å).

slice_cell_beta

Slice cell angle β

The unit cell angle beta of the slice map (in degrees).

slice_cell_c_value

Slice cell dimension C

The unit cell length of the slice map along the C axis (in Å).

slice_cell_gamma

Slice cell angle γ

The unit cell angle gamma of the slice map (in degrees).

slice_contour_level_value

Slice contour level

The density threshold used to visualize the slice map.

slice_contour_primary

Slice primary contour flag

Indicates if this contour level is the primary visualization level for the slice map.

slice_contour_source

Slice contour source

Origin or method used to define the contour level for the slice map.

slice_data_type

Slice data type

Type of numerical data stored in the slice map (e.g., float, integer).

slice_dimension_col

Slice dimension (columns)

Number of grid points along the X or column axis in the slice map.

slice_dimension_row

Slice dimension (rows)

Number of grid points along the Y or row axis in the slice map.

slice_dimension_sec

Slice dimension (sections)

Number of grid points along the Z or section axis in the slice map.

slice_fast_axis

Slice fast axis

Fastest changing axis in the grid order of the slice map.

slice_filename

Slice filename

Name of the slice map file.

slice_helical_axial_symmetry_details

Slice helical axial symmetry details

Description of the helical symmetry applied to the slice map.

slice_helical_delta_phi_value

Slice helical delta phi (°)

Angular rotation per subunit along the helix of the slice map (in degrees).

slice_helical_delta_z_value

Slice helical delta z (Å)

Axial translation per subunit along the helix of the slice map (in Å).

slice_label

Slice label

Label or description associated with the slice map.

slice_maximum_value

Slice maximum value

Maximum density value in the slice map.

slice_medium_axis

Slice medium axis

Intermediate axis in the grid ordering of the slice map.

slice_minimum_value

Slice minimum value

Minimum density value in the slice map.

slice_origin_col

Slice origin (column)

Origin coordinate along the column (X) axis of the slice map.

slice_origin_row

Slice origin (row)

Origin coordinate along the row (Y) axis of the slice map.

slice_origin_sec

Slice origin (section)

Origin coordinate along the section (Z) axis of the slice map.

slice_pixel_spacing_x

Slice pixel spacing X (Å)

Distance between voxels along the X axis of the slice map (in Å).

slice_pixel_spacing_y

Slice pixel spacing Y (Å)

Distance between voxels along the Y axis of the slice map (in Å).

slice_pixel_spacing_z

Slice pixel spacing Z (Å)

Distance between voxels along the Z axis of the slice map (in Å).

slice_point_group

Slice point group

Point group symmetry of the slice map.

slice_size_kb

Slice file size (KB)

Size of the slice map file in kilobytes.

slice_slow_axis

Slice slow axis

Slowest changing axis in the grid order of the slice map.

slice_space_group

Slice space group

Space group symmetry of the slice map.

slice_spacing_x

Slice spacing X (Å)

Grid spacing along the X axis of the slice map (in Å).

slice_spacing_y

Slice spacing Y (Å)

Grid spacing along the Y axis of the slice map (in Å).

slice_spacing_z

Slice spacing Z (Å)

Grid spacing along the Z axis of the slice map (in Å).

slice_std_value

Slice standard deviation

Value dispersion (standard deviation) across the density values of the slice map.

slit_width

Slit Width

Width of the slit in the energy filter (e.g., in eV).

slow_axis

Slow Axis

Orientation or direction of the slow acquisition axis, aggregated from any deposited map (primary, half-map, additional…

smoc_percentile_value

SMOC percentile

smoc_relative_percentile_value

SMOC relative percentile

software

Software

Software tools used during processing, refinement, or analysis.

software_ft

Software (Facet)

Software field optimized for faceting and filtering.

software_sgt

Software (Suggester)

Software field optimized for autocomplete suggestions.

space_group

Space Group

Crystallographic space group aggregated from any deposited map (primary, half-map, additional, or mask).

spacing_x

Spacing X

Physical spacing between voxels along the X axis (in Å), aggregated from any deposited map (primary, half-map, addition…

spacing_y

Spacing Y

Physical spacing between voxels along the Y axis (in Å), aggregated from any deposited map (primary, half-map, addition…

spacing_z

Spacing Z

Physical spacing between voxels along the Z axis (in Å), aggregated from any deposited map (primary, half-map, addition…

species_name

Taxonomy Species

Name of the species classification of the organism (e.g., Homo sapiens, Escherichia coli).

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