EMDB Solr Search Field Documentation
Segmentation file
Path or filename of segmentation data associated with the entry.
Segmentation file (suggest)
Path or filename of segmentation data associated with the entry.
Segmentation mask average value
The mean density or mask value across the segmentation mask.
Segmentation mask cell dimension A
The unit cell length of the segmentation mask along the A axis (in Å).
Segmentation mask cell angle α
The unit cell angle alpha of the segmentation mask (in degrees).
Segmentation mask cell dimension B
The unit cell length of the segmentation mask along the B axis (in Å).
Segmentation mask cell angle β
The unit cell angle beta of the segmentation mask (in degrees).
Segmentation mask cell dimension C
The unit cell length of the segmentation mask along the C axis (in Å).
Segmentation mask cell angle γ
The unit cell angle gamma of the segmentation mask (in degrees).
Segmentation mask contour level
The density threshold used to visualize the segmentation mask.
Segmentation mask primary contour flag
Indicates if this contour level is the primary visualization level for the segmentation mask.
Segmentation mask contour source
Origin or method used to define the contour level for the segmentation mask.
Segmentation mask data type
Type of numerical data stored in the segmentation mask (e.g., float, integer).
Segmentation mask dimension (columns)
Number of grid points along the X or column axis in the segmentation mask.
Segmentation mask dimension (rows)
Number of grid points along the Y or row axis in the segmentation mask.
Segmentation mask dimension (sections)
Number of grid points along the Z or section axis in the segmentation mask.
Segmentation mask fast axis
Fastest changing axis in the grid order of the segmentation mask.
Segmentation mask helical axial symmetry details
Description of the helical symmetry applied to the segmentation mask.
Segmentation mask helical delta phi (°)
Angular rotation per subunit along the helix of the segmentation mask (in degrees).
Segmentation mask helical delta z (Å)
Axial translation per subunit along the helix of the segmentation mask (in Å).
Segmentation mask label
Label or description associated with the segmentation mask.
Segmentation mask maximum value
Maximum value in the segmentation mask.
Segmentation mask medium axis
Intermediate axis in the grid ordering of the segmentation mask.
Segmentation mask minimum value
Minimum value in the segmentation mask.
Segmentation mask origin (column)
Origin coordinate along the column (X) axis of the segmentation mask.
Segmentation mask origin (row)
Origin coordinate along the row (Y) axis of the segmentation mask.
Segmentation mask origin (section)
Origin coordinate along the section (Z) axis of the segmentation mask.
Segmentation mask pixel spacing X (Å)
Distance between voxels along the X axis of the segmentation mask (in Å).
Segmentation mask pixel spacing Y (Å)
Distance between voxels along the Y axis of the segmentation mask (in Å).
Segmentation mask pixel spacing Z (Å)
Distance between voxels along the Z axis of the segmentation mask (in Å).
Segmentation mask point group
Point group symmetry of the segmentation mask.
Segmentation mask point group (symbol)
Symmetry group symbol for the point group of the segmentation mask.
Segmentation mask slow axis
Slowest changing axis in the grid order of the segmentation mask.
Segmentation mask space group
Space group symmetry of the segmentation mask.
Segmentation mask space group (symbol)
Symbolic representation of the space group of the segmentation mask.
Segmentation mask spacing X (Å)
Grid spacing along the X axis of the segmentation mask (in Å).
Segmentation mask spacing Y (Å)
Grid spacing along the Y axis of the segmentation mask (in Å).
Segmentation mask spacing Z (Å)
Grid spacing along the Z axis of the segmentation mask (in Å).
Segmentation mask standard deviation
Value dispersion (standard deviation) across the values of the segmentation mask.
Segmentation original files
Original files used to create the segmentation.
Segmentation mask file size (KB)
Size of the segmentation mask file in kilobytes.
Sequence discrepancy
List of sequence discrepancies between the model and the reference sequence.
Shadowing material
Material used for metal shadowing in specimen preparation (e.g. platinum, gold).
