EMDB Solr Search Field Documentation
Natural source strain (suggest)
Strain of the natural source organism.
Nominal Cs Value
Nominal spherical aberration coefficient of the microscope (Cs) in millimeters.
Nominal Defocus Maximum
Maximum nominal defocus value used during imaging.
Nominal Defocus Minimum
Minimum nominal defocus value used during imaging.
Oligomeric state
Description of the oligomeric state (e.g. monomer, dimer, trimer).
Taxonomy Order
Name of the order classification of the organism (e.g., Primates, Enterobacterales).
Organism
Aggregated scientific or common name of the organism(s) from which the sample was derived.
Organization type
Category or type of organization (e.g., university, research institute).
Origin (Columns)
Origin coordinate of the data along the X/column axis, aggregated from any deposited map (primary, half-map, additional…
Origin (Rows)
Origin coordinate of the data along the Y/row axis, aggregated from any deposited map (primary, half-map, additional, o…
Origin (Sections)
Origin coordinate of the data along the Z/section axis, aggregated from any deposited map (primary, half-map, additiona…
Other database content type
Type of data represented by the external database reference (e.g., structure, tomography, microscopy image).
Overall atom inclusion
Overall fraction of atoms included in the density map.
Overall atom inclusion
Overall fraction of atoms included in the density map.
Overall atom outside map
Overall fraction of atoms outside the density map.
Overall molecular weight
Calculated molecular weight of the deposited map, by sum of all deposited sample molecular weight.
Overlap to map
Overlap to model
Particle Selection Reference Model
Model used as reference during particle selection
Pfam family name
Name of the protein family or domain corresponding to the Pfam accession.
Pfam family name (suggest)
Name of the protein family or domain corresponding to the Pfam accession.
Phase Plate Type
Type of phase plate used to enhance contrast (e.g., Volta, Zernike).
Phase Plate Type (suggest)
Type of phase plate used to enhance contrast (e.g., Volta, Zernike).
Taxonomy Phylum
Name of the phylum classification of the organism (e.g., Chordata, Proteobacteria).
Principal investigator continent code
Continent code derived from the PI’s country code.
Principal investigator country
Country where the principal investigator’s organization is based.
Principal investigator country (suggest)
Country where the principal investigator’s organization is based.
Principal investigator organization
Name of the organization of the principal investigator.
Pixel Spacing X
Pixel spacing along the X axis (in Å), aggregated from any deposited map (primary, half-map, additional, or mask).
Pixel Spacing Y
Pixel spacing along the Y axis (in Å), aggregated from any deposited map (primary, half-map, additional, or mask).
Pixel Spacing Z
Pixel spacing along the Z axis (in Å), aggregated from any deposited map (primary, half-map, additional, or mask).
