Substrates for peptidase M12.225: ADAMTS5 peptidase

Summary Gene structure Alignment Tree Sequences Sequence features Distribution Structure Literature Substrates Pharma

Peptide and protein substrates that are thought to be physiologically relevant are indicated by P. Peptide and protein substrates that are thought to be pathologically relevant are indicated by D. Peptide and protein substrates that are not physiologically relevant are indicated by N. Synthetic substrates are indicated by S. Click on the symbol to show only physiological, non-physiological or synthetic substrates, or here to display all substrates. How cleavage sites have been identified are indicated by the following evidence codes: NT = N-terminal sequencing, MS = mass spectroscopy, MU = mutation, CS = consensus sequence, LC = liquid chromatography. To see all annotated cleavages for a protein substrate, click on the UniProt Accession.

Substrate	Uniprot	Residue range	Cleavage Site	Cleavage type	Evidence	P4	P3	P2	P1	P1'	P2'	P3'	P4'	Reference	CutDB
1,2-phenylacetyl-CoA epoxidase, subunit B	P76078	57-78	peptide-Ser63+Gln-peptide	N	MS	Ile	Val	Ala	Ser	Gln	Pro	Glu	Glu	Biniossek et al., 2016
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	P0A9D8	62-85	peptide-Ile69+Asn-peptide	N	MS	Ser	Phe	Arg	Ile	Asn	Asp	Asn	Gln	Biniossek et al., 2016
2,3-bisphosphoglycerate-independent phosphoglycerate mutase	P37689	417-430	peptide-Glu419+Ala-peptide	N	MS	Lys	Ala	Val	Glu	Ala	Leu	Asp	His	Biniossek et al., 2016
2-dehydro-3-deoxyphosphooctonate aldolase	P0A715	92-120	peptide-Pro104+Val-peptide	N	MS	Gln	Ala	Gln	Pro	Val	Ala	Asp	Val	Biniossek et al., 2016
2-hydroxy-3-oxopropionate reductase	P0ABQ2	194-218	peptide-Ala204+Ile-peptide	N	MS	Val	Tyr	Gln	Ala	Ile	Arg	Gly	Gly	Biniossek et al., 2016
2-iminobutanoate/2-iminopropanoate deaminase	P0AF93	80-115	peptide-Pro103+Ala-peptide	N	MS	Ala	Thr	Phe	Pro	Ala	Arg	Ser	Cys	Biniossek et al., 2016
2-oxoglutarate dehydrogenase E1 component	P0AFG3	780-812	peptide-Pro801+Ala-peptide	N	MS	Thr	Phe	Leu	Pro	Ala	Ile	Gly	Glu	Biniossek et al., 2016
2-oxoglutarate dehydrogenase E1 component	P0AFG3	868-920	peptide-Tyr901+Ala-peptide	N	MS	Ser	Leu	Arg	Tyr	Ala	Gly	Arg	Pro	Biniossek et al., 2016
3,4-dihydroxy-2-butanone 4-phosphate synthase	P0A7J0	1-15	peptide-Gly10+Thr-peptide	N	MS	Ser	Ser	Phe	Gly	Thr	Pro	Phe	Glu	Biniossek et al., 2016
3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase	P0A6Q3	139-153	peptide-Gly142+Leu-peptide	N	MS	Leu	Ile	Met	Gly	Leu	Ala	Asp	Gly	Biniossek et al., 2016
3-ketoacyl-CoA thiolase FadI	P76503	264-289	peptide-Gly278+Ala-peptide	N	MS	Leu	Thr	Asp	Gly	Ala	Ala	Ala	Val	Biniossek et al., 2016
3-mercaptopyruvate sulfurtransferase	P31142	1-27	peptide-Glu14+His-peptide	N	MS	Trp	Leu	Ala	Glu	His	Ile	Asp	Asp	Biniossek et al., 2016
3-methyl-2-oxobutanoate hydroxymethyltransferase	P31057	156-189	peptide-Glu171+Ala-peptide	N	MS	Leu	Ala	Leu	Glu	Ala	Ala	Gly	Ala	Biniossek et al., 2016
3-oxoacyl-[acyl-carrier-protein] synthase 1	P0A953	137-151	peptide-Met138+Ala-peptide	N	MS	Thr	Lys	Ala	Met	Ala	Ser	Gly	Val	Biniossek et al., 2016
3-oxoacyl-[acyl-carrier-protein] synthase 1	P0A953	218-282	peptide-Glu256+Ile-peptide	N	MS	Ile	Tyr	Ala	Glu	Ile	Val	Gly	Tyr	Biniossek et al., 2016
3-oxoacyl-[acyl-carrier-protein] synthase 1	P0A953	152-181	peptide-Cys163+Ala-peptide	N	MS	Ser	Ser	Ala	Cys	Ala	Thr	Ser	Ala	Biniossek et al., 2016
30S ribosomal protein S1	P0AG67	465-504	peptide-Glu482+Ala-peptide	N	MS	Arg	Ala	Ser	Glu	Ala	Ser	Arg	Asp	Biniossek et al., 2016
30S ribosomal protein S13	P0A7S9	45-57	peptide-Glu47+Leu-peptide	N	MS	Lys	Ile	Ser	Glu	Leu	Ser	Glu	Gly	Biniossek et al., 2016
30S ribosomal protein S17	P0AG63	44-69	peptide-Cys53+Gly-peptide	N	MS	Asn	Asn	Glu	Cys	Gly	Ile	Gly	Asp	Biniossek et al., 2016
30S ribosomal protein S18	P0A7T7	13-24	peptide-Glu16+Gly-peptide	N	MS	Phe	Thr	Ala	Glu	Gly	Val	Gln	Glu	Biniossek et al., 2016
30S ribosomal protein S18	P0A7T7	10-24	peptide-Thr14+Ala-peptide	N	MS	Cys	Arg	Phe	Thr	Ala	Glu	Gly	Val	Biniossek et al., 2016
30S ribosomal protein S2	P0A7V0	82-95	peptide-Ala83+Ala-peptide	N	MS	Val	Lys	Asp	Ala	Ala	Leu	Ser	Cys	Biniossek et al., 2016
30S ribosomal protein S2	P0A7V0	153-174	peptide-Phe162+Val-peptide	N	MS	Asp	Ala	Leu	Phe	Val	Ile	Asp	Ala	Biniossek et al., 2016
30S ribosomal protein S3	P0A7V3	50-62	peptide-Ser51+Val-peptide	N	MS	Ala	Lys	Ala	Ser	Val	Ser	Arg	Ile	Biniossek et al., 2016
30S ribosomal protein S5	P0A7W1	113-126	peptide-Glu116+Val-peptide	N	MS	Ala	Val	Leu	Glu	Val	Ala	Gly	Val	Biniossek et al., 2016
30S ribosomal protein S5	P0A7W1	87-126	peptide-Glu101+Gly-peptide	N	MS	Pro	Ala	Ser	Glu	Gly	Thr	Gly	Ile	Biniossek et al., 2016
30S ribosomal protein S6	P02358	57-79	peptide-Glu69+Val-peptide	N	MS	Ala	Pro	Gln	Glu	Val	Ile	Asp	Glu	Biniossek et al., 2016
30S ribosomal protein S9	P0A7X3	28-60	peptide-Met46+Val-peptide	N	MS	Thr	Ala	Arg	Met	Val	Val	Arg	Gln	Biniossek et al., 2016
4-aminobutyrate aminotransferase GabT	P22256	248-268	peptide-Glu255+Gln-peptide	N	MS	Phe	Ala	Met	Glu	Gln	Met	Gly	Val	Biniossek et al., 2016
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase	Q46938	166-251	peptide-Glu225+Thr-peptide	N	MS	Gln	Pro	Gln	Glu	Thr	Arg	His	Ile	Biniossek et al., 2016
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase	Q46938	29-55	peptide-Met37+Val-peptide	N	MS	Glu	Tyr	Thr	Met	Val	Tyr	Ser	His	Biniossek et al., 2016
4-hydroxy-tetrahydrodipicolinate synthase	P0A6L2	121-138	peptide-Glu124+His-peptide	N	MS	Ala	Ile	Ala	Glu	His	Thr	Asp	Leu	Biniossek et al., 2016
50S ribosomal protein L10	P0A7J3	110-144	peptide-Glu134+Ala-peptide	N	MS	Thr	Tyr	Glu	Glu	Ala	Ile	Ala	Arg	Biniossek et al., 2016
50S ribosomal protein L13	P0AA10	86-106	peptide-Ile93+Ala-peptide	N	MS	Glu	Glu	Met	Ile	Ala	Arg	Arg	Pro	Biniossek et al., 2016
50S ribosomal protein L13	P0AA10	86-106	peptide-Glu91+Met-peptide	N	MS	Thr	Phe	Glu	Glu	Met	Ile	Ala	Arg	Biniossek et al., 2016
50S ribosomal protein L17	P0AG44	43-56	peptide-Glu43+Leu-peptide	N	MS	Lys	Ala	Lys	Glu	Leu	Arg	Arg	Val	Biniossek et al., 2016
50S ribosomal protein L18	P0C018	34-56	peptide-Gln38+Val-peptide	N	MS	Ile	Tyr	Ala	Gln	Val	Ile	Ala	Pro	Biniossek et al., 2016
50S ribosomal protein L20	P0A7L3	23-41	peptide-Gly26+Ala-peptide	N	MS	Gly	Tyr	Tyr	Gly	Ala	Arg	Ser	Arg	Biniossek et al., 2016
50S ribosomal protein L20	P0A7L3	55-78	peptide-Ala68+Ala-peptide	N	MS	Ile	Asn	Ala	Ala	Ala	Arg	Gln	Asn	Biniossek et al., 2016
50S ribosomal protein L21	P0AG48	25-48	peptide-Glu37+Val-peptide	N	MS	Glu	Phe	Ala	Glu	Val	Leu	Met	Ile	Biniossek et al., 2016
50S ribosomal protein L22	P61175	50-70	peptide-Glu59+His-peptide	N	MS	Ala	Asn	Ala	Glu	His	Asn	Asp	Gly	Biniossek et al., 2016
50S ribosomal protein L25	P68919	54-68	peptide-Glu55+Phe-peptide	N	MS	Ala	Lys	Ala	Glu	Phe	Tyr	Ser	Glu	Biniossek et al., 2016
50S ribosomal protein L29	P0A7M6	30-44	peptide-Ala32+Ala-peptide	N	MS	Arg	Met	Gln	Ala	Ala	Ser	Gly	Gln	Biniossek et al., 2016
50S ribosomal protein L29	P0A7M6	10-23	peptide-Glu13+Leu-peptide	N	MS	Ser	Val	Glu	Glu	Leu	Asn	Thr	Glu	Biniossek et al., 2016
50S ribosomal protein L32	P0A7N4	18-32	peptide-Ala24+Val-peptide	N	MS	Ala	Leu	Thr	Ala	Val	Thr	Ser	Leu	Biniossek et al., 2016
50S ribosomal protein L36	P0A7Q6	19-32	peptide-Arg19+Asp-peptide	N	MS	Ile	Val	Lys	Arg	Asp	Gly	Val	Ile	Biniossek et al., 2016
50S ribosomal protein L4	P60723	7-21	peptide-Ser10+Ala-peptide	N	MS	Asp	Ala	Gln	Ser	Ala	Leu	Thr	Val	Biniossek et al., 2016
50S ribosomal protein L4	P60723	107-123	peptide-Glu111+Leu-peptide	N	MS	Ile	Leu	Ser	Glu	Leu	Val	Arg	Gln	Biniossek et al., 2016
50S ribosomal protein L5	P62399	121-145	peptide-Tyr128+Ser-peptide	N	MS	Arg	Gly	Asn	Tyr	Ser	Met	Gly	Val	Biniossek et al., 2016
50S ribosomal protein L6	P0AG55	70-85	peptide-Met75+Val-peptide	N	MS	Leu	Asn	Ser	Met	Val	Ile	Gly	Val	Biniossek et al., 2016
50S ribosomal protein L6	P0AG55	100-134	peptide-Gly120+Ile-peptide	N	MS	Leu	Pro	Ala	Gly	Ile	Thr	Ala	Glu	Biniossek et al., 2016
50S ribosomal protein L7/L12	P0A7K2	31-52	peptide-Ser34+Ala-peptide	N	MS	Phe	Gly	Val	Ser	Ala	Ala	Ala	Ala	Biniossek et al., 2016
50S ribosomal protein L7/L12	P0A7K2	31-52	peptide-Ala40+Val-peptide	N	MS	Ala	Ala	Val	Ala	Val	Ala	Ala	Gly	Biniossek et al., 2016
50S ribosomal protein L7/L12	P0A7K2	6-30	peptide-Glu22+Leu-peptide	N	MS	Asp	Val	Val	Glu	Leu	Ile	Ser	Ala	Biniossek et al., 2016
50S ribosomal protein L7/L12	P0A7K2	6-30	peptide-Glu10+Ala-peptide	N	MS	Gln	Ile	Ile	Glu	Ala	Val	Ala	Ala	Biniossek et al., 2016
50S ribosomal protein L7/L12	P0A7K2	6-30	peptide-Ala13+Ala-peptide	N	MS	Glu	Ala	Val	Ala	Ala	Met	Ser	Val	Biniossek et al., 2016
50S ribosomal protein L9	P0A7R1	113-141	peptide-Glu129+Val-peptide	N	MS	Gly	Glu	His	Glu	Val	Ser	Phe	Gln	Biniossek et al., 2016
6,7-dimethyl-8-ribityllumazine synthase	P61714	137-152	peptide-Ala140+Ala-peptide	N	MS	Gly	Ala	Glu	Ala	Ala	Leu	Thr	Ala	Biniossek et al., 2016
6-phosphogluconate dehydrogenase, decarboxylating	P00350	265-287	peptide-Ser269+Ala-peptide	N	MS	Thr	Ser	Gln	Ser	Ala	Leu	Asp	Leu	Biniossek et al., 2016
6-phosphogluconate dehydrogenase, decarboxylating	P00350	184-205	peptide-Gln195+Leu-peptide	N	MS	Gly	Asp	Met	Gln	Leu	Ile	Ala	Glu	Biniossek et al., 2016
6-phosphogluconate dehydrogenase, decarboxylating	P00350	206-236	peptide-Glu221+Trp-peptide	N	MS	Thr	Phe	Thr	Glu	Trp	Asn	Asn	Gly	Biniossek et al., 2016
6-phosphogluconate dehydrogenase, decarboxylating	P00350	147-158	peptide-Glu150+Leu-peptide	N	MS	Glu	Ala	Tyr	Glu	Leu	Val	Ala	Pro	Biniossek et al., 2016
6-phosphogluconate dehydrogenase, decarboxylating	P00350	59-75	peptide-Glu62+Ser-peptide	N	MS	Glu	Phe	Val	Glu	Ser	Leu	Glu	Thr	Biniossek et al., 2016
6-phosphogluconate dehydrogenase, decarboxylating	P00350	265-293	peptide-Ser278+Leu-peptide	N	MS	Glu	Pro	Leu	Ser	Leu	Ile	Thr	Glu	Biniossek et al., 2016
60 kDa chaperonin	P0A6F5	208-225	peptide-Glu214+Leu-peptide	N	MS	Gly	Ala	Val	Glu	Leu	Glu	Ser	Pro	Biniossek et al., 2016
60 kDa chaperonin	P0A6F5	442-470	peptide-Arg445+Ala-peptide	N	MS	Val	Ala	Leu	Arg	Ala	Met	Glu	Ala	Biniossek et al., 2016
60 kDa chaperonin	P0A6F5	143-160	peptide-Ala145+Gln-peptide	N	MS	Lys	Ala	Ile	Ala	Gln	Val	Gly	Thr	Biniossek et al., 2016
60 kDa chaperonin	P0A6F5	394-425	peptide-His401+Ala-peptide	N	MS	Asp	Ala	Leu	His	Ala	Thr	Arg	Ala	Biniossek et al., 2016
60 kDa chaperonin	P0A6F5	246-272	peptide-Glu257+Ala-peptide	N	MS	Val	Glu	Gly	Glu	Ala	Leu	Ala	Thr	Biniossek et al., 2016
Acetate kinase	P0A6A3	273-296	peptide-Gly278+Leu-peptide	N	MS	Gly	Leu	Leu	Gly	Leu	Thr	Glu	Val	Biniossek et al., 2016
Acetate kinase	P0A6A3	18-45	peptide-Glu28+Tyr-peptide	N	MS	Asn	Gly	Glu	Glu	Tyr	Leu	Ser	Gly	Biniossek et al., 2016
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha	P0ABD5	244-259	peptide-Glu249+Ala-peptide	N	MS	Leu	Ala	Ala	Glu	Ala	Met	Gly	Ile	Biniossek et al., 2016
Aconitate hydratase B	P36683	86-110	peptide-Glu88+Leu-peptide	N	MS	Lys	Ala	Ile	Glu	Leu	Leu	Gly	Thr	Biniossek et al., 2016
Aconitate hydratase B	P36683	502-535	peptide-Ala519+Ala-peptide	N	MS	Ala	Phe	Ala	Ala	Ala	Thr	Gly	Val	Biniossek et al., 2016
Aconitate hydratase B	P36683	357-373	peptide-Glu359+Ala-peptide	N	MS	Lys	Ala	Arg	Glu	Ala	Leu	Gly	Leu	Biniossek et al., 2016
Acyl carrier protein	P0A6A8	20-62	peptide-Met45+Ala-peptide	N	MS	Glu	Leu	Val	Met	Ala	Leu	Glu	Glu	Biniossek et al., 2016
Acyl carrier protein	P0A6A8	20-62	peptide-Phe51+Asp-peptide	N	MS	Glu	Glu	Glu	Phe	Asp	Thr	Glu	Ile	Biniossek et al., 2016
Acyl carrier protein	P0A6A8	20-62	peptide-Ala46+Leu-peptide	N	MS	Leu	Val	Met	Ala	Leu	Glu	Glu	Glu	Biniossek et al., 2016
ADAMTS5 peptidase	Q9UNA0	262-930	peptide-Glu753+Gly-peptide	P	NT	Arg	Ile	Pro	Glu	Gly	Ala	Thr	His	Zeng et al., 2006	20316
Adenine phosphoribosyltransferase	P69503	122-140	peptide-Leu129+Ala-peptide	N	MS	Asp	Asp	Leu	Leu	Ala	Thr	Gly	Gly	Biniossek et al., 2016
Adenylosuccinate lyase	P0AB89	372-394	peptide-Glu383+Val-peptide	N	MS	His	Asn	Trp	Glu	Val	Leu	Ala	Glu	Biniossek et al., 2016
Adenylosuccinate lyase	P0AB89	55-81	peptide-Asp62+Ala-peptide	N	MS	Phe	Ala	Ala	Asp	Ala	Ile	Gly	Tyr	Biniossek et al., 2016
Aerobic glycerol-3-phosphate dehydrogenase	P13035	48-76	peptide-Glu66+Ala-peptide	N	MS	Leu	Val	Ser	Glu	Ala	Leu	Ala	Glu	Biniossek et al., 2016
Aerobic glycerol-3-phosphate dehydrogenase	P13035	5-47	peptide-Glu33+Ala-peptide	N	MS	Leu	Met	Leu	Glu	Ala	Gln	Asp	Leu	Biniossek et al., 2016
aggrecan core protein	P13608	17-2364	peptide-Glu373+Ala-peptide	P		Thr	Glu	Gly	Glu	Ala	Arg	Gly	Ser	Abbaszade et al., 1999
aggrecan core protein	P16112	17-2415	peptide-Glu392+Ala-peptide	P		Thr	Glu	Gly	Glu	Ala	Arg	Gly	Ser	Westling et al., 2002	19822
aggrecan core protein	P13608	17-2364	peptide-Glu1790+Ala-peptide	P	NT	Thr	Ala	Gln	Glu	Ala	Gly	Glu	Gly	Zeng et al., 2006
Alanine--tRNA ligase	P00957	695-713	peptide-Ala697+Val-peptide	N	MS	Arg	Ile	Glu	Ala	Val	Thr	Gly	Glu	Biniossek et al., 2016
Alanine--tRNA ligase	P00957	4-19	peptide-Glu7+Ile-peptide	N	MS	Ser	Thr	Ala	Glu	Ile	Arg	Gln	Ala	Biniossek et al., 2016
Aldehyde-alcohol dehydrogenase	P0A9Q7	304-317	peptide-Glu306+Leu-peptide	N	MS	Lys	Ile	Ala	Glu	Leu	Ala	Gly	Phe	Biniossek et al., 2016
Aldehyde-alcohol dehydrogenase	P0A9Q7	554-572	peptide-Glu568+Leu-peptide	N	MS	His	Phe	Glu	Glu	Leu	Ala	Leu	Arg	Biniossek et al., 2016
Alkaline phosphatase isozyme conversion protein	P10423	48-62	peptide-Glu54+Met-peptide	N	MS	Thr	Pro	Ala	Glu	Met	Leu	Ser	Ala	Biniossek et al., 2016
alpha-2-macroglobulin	P01023	24-1474	peptide-Met713+Gly-peptide	P		Ser	Asp	Val	Met	Gly	Arg	Gly	His	Tortorella et al., 2004
Ancillary SecYEG translocon subunit	P76576	24-68	peptide-Asn59+Ala-peptide	N	MS	Ala	Tyr	Gln	Asn	Ala	Val	Thr	Ala	Biniossek et al., 2016
Arabinose 5-phosphate isomerase KdsD	P45395	202-220	peptide-Val206+Asn-peptide	N	MS	Leu	Leu	Arg	Val	Asn	Asp	Ile	Met	Biniossek et al., 2016
Aromatic-amino-acid aminotransferase	P04693	306-328	peptide-Glu314+Met-peptide	N	MS	Glu	Val	Glu	Glu	Met	Arg	Thr	Arg	Biniossek et al., 2016
Asparagine synthetase B [glutamine-hydrolyzing]	P22106	467-482	peptide-Gln471+Gln-peptide	N	MS	Val	Ala	Ala	Gln	Gln	Val	Ser	Asp	Biniossek et al., 2016
Aspartate aminotransferase	P00509	205-236	peptide-Phe217+Ala-peptide	N	MS	Tyr	Gln	Gly	Phe	Ala	Arg	Gly	Leu	Biniossek et al., 2016
Aspartate ammonia-lyase	P0AC38	294-327	peptide-Glu316+Leu-peptide	N	MS	Asn	Leu	Pro	Glu	Leu	Gln	Ala	Gly	Biniossek et al., 2016
Aspartate ammonia-lyase	P0AC38	187-212	peptide-Glu203+Phe-peptide	N	MS	Leu	Gly	Gln	Glu	Phe	Arg	Ala	Phe	Biniossek et al., 2016
ATP synthase subunit alpha	P0ABB0	119-139	peptide-Glu130+Ala-peptide	N	MS	Ser	Ala	Val	Glu	Ala	Ile	Ala	Pro	Biniossek et al., 2016
ATP synthase subunit alpha	P0ABB0	464-499	peptide-Glu485+Ile-peptide	N	MS	Leu	Met	Gln	Glu	Ile	Asn	Gln	Thr	Biniossek et al., 2016
ATP synthase subunit beta	P0ABB4	113-132	peptide-Glu119+Leu-peptide	N	MS	Ser	Tyr	Glu	Glu	Leu	Ser	Asn	Ser	Biniossek et al., 2016
ATP synthase subunit beta	P0ABB4	186-202	peptide-Glu193+Met-peptide	N	MS	Phe	Tyr	His	Glu	Met	Thr	Asp	Ser	Biniossek et al., 2016
ATP-dependent 6-phosphofructokinase isozyme 1	P0A796	173-199	peptide-Ala181+Ala-peptide	N	MS	Thr	Leu	Ala	Ala	Ala	Ile	Ala	Gly	Biniossek et al., 2016
ATP-dependent Clp protease proteolytic subunit	P0A6G7	163-180	peptide-Ala168+Leu-peptide	N	MS	Glu	Leu	Met	Ala	Leu	His	Thr	Gly	Biniossek et al., 2016
ATP-dependent protease ATPase subunit HslU	P0A6H5	119-140	peptide-Glu125+Leu-peptide	N	MS	Arg	Ala	Glu	Glu	Leu	Ala	Glu	Glu	Biniossek et al., 2016
Autonomous glycyl radical cofactor	P68066	36-48	peptide-Tyr38+Ala-peptide	N	MS	Lys	Ala	Gly	Tyr	Ala	Glu	Asp	Glu	Biniossek et al., 2016
Autonomous glycyl radical cofactor	P68066	36-48	peptide-Gly37+Tyr-peptide	N	MS	Ala	Lys	Ala	Gly	Tyr	Ala	Glu	Asp	Biniossek et al., 2016
Beta-1,6-galactofuranosyltransferase WbbI	P37749	143-160	peptide-Tyr146+Leu-peptide	N	MS	Ile	Phe	Asp	Tyr	Leu	Val	Ser	Ser	Biniossek et al., 2016
Bifunctional aspartokinase/homoserine dehydrogenase 1	P00561	70-91	peptide-Glu73+Leu-peptide	N	MS	Ile	Phe	Ala	Glu	Leu	Leu	Thr	Gly	Biniossek et al., 2016
Bifunctional aspartokinase/homoserine dehydrogenase 1	P00561	129-153	peptide-Glu139+Ala-peptide	N	MS	Gly	Val	Leu	Glu	Ala	Arg	Gly	His	Biniossek et al., 2016
Bifunctional chorismate mutase/prephenate dehydratase	P0A9J8	21-37	peptide-Ala23+Leu-peptide	N	MS	Lys	Leu	Leu	Ala	Leu	Leu	Ala	Glu	Biniossek et al., 2016
Bifunctional protein FolD	P24186	57-109	peptide-Glu81+Leu-peptide	N	MS	Glu	Leu	Leu	Glu	Leu	Ile	Asp	Thr	Biniossek et al., 2016
Bifunctional purine biosynthesis protein PurH	P15639	483-504	peptide-Ala489+Ala-peptide	N	MS	Asp	Ala	Ala	Ala	Ala	Ala	Gly	Val	Biniossek et al., 2016
Bifunctional purine biosynthesis protein PurH	P15639	84-114	peptide-Glu92+His-peptide	N	MS	Ile	Met	Glu	Glu	His	Gln	Ile	Gln	Biniossek et al., 2016
Bifunctional purine biosynthesis protein PurH	P15639	382-391	peptide-Leu386+Leu-peptide	N	MS	Asn	Gly	Gly	Leu	Leu	Val	Gln	Asp	Biniossek et al., 2016
Bifunctional purine biosynthesis protein PurH	P15639	179-206	peptide-Glu181+His-peptide	N	MS	Lys	Ala	Phe	Glu	His	Thr	Ala	Ala	Biniossek et al., 2016
Bifunctional purine biosynthesis protein PurH	P15639	18-47	peptide-Gln25+Ala-peptide	N	MS	Glu	Phe	Ala	Gln	Ala	Leu	Ser	Ala	Biniossek et al., 2016
Bifunctional purine biosynthesis protein PurH	P15639	18-47	peptide-Ser28+Ala-peptide	N	MS	Gln	Ala	Leu	Ser	Ala	Arg	Gly	Val	Biniossek et al., 2016
biglycan	P21810	38-368	peptide-Asn186+Cys-peptide	P		Arg	Asn	Met	Asn	Cys	Ile	Glu	Met	Melching et al., 2006	20322
Biotin carboxyl carrier protein of acetyl-CoA carboxylase	P0ABD8	123-131	peptide-Met123+Met-peptide	N	MS	Ala	Met	Lys	Met	Met	Asn	Gln	Ile	Biniossek et al., 2016
Carbonic anhydrase 1	P0ABE9	44-52	peptide-Gln51+Arg-peptide	N	MS	Leu	Val	Thr	Gln	Arg	Glu	Pro	Gly	Biniossek et al., 2016
cartilage intermediate layer protein 1	O75339	22-1184	peptide-Glu591+Val-peptide	P	MS	Pro	Leu	Gly	Glu	Val	Val	Gly	Glu	Zhen et al., 2008	22389
cartilage intermediate layer protein 1	O75339	22-1184	peptide-Ser607+Phe-peptide	P	MS	Pro	Ser	Arg	Ser	Phe	Tyr	Arg	Gln	Zhen et al., 2008	22390
cartilage intermediate layer protein 1	O75339	22-1184	peptide-Val592+Val-peptide	P	MS	Leu	Gly	Glu	Val	Val	Gly	Glu	Asp	Zhen et al., 2008	22391
cartilage intermediate layer protein 1	O75339	22-1184	peptide-Trp699+Ser-peptide	P	MS	Val	Lys	Leu	Trp	Ser	Leu	Asn	Pro	Zhen et al., 2008	22392
cartilage intermediate layer protein 1	O75339	22-1184	peptide-Glu717+Asn-peptide	P	MS	Phe	Lys	Phe	Glu	Asn	Gln	Arg	Arg	Zhen et al., 2008	22393
cartilage intermediate layer protein 1	O75339	22-1184	peptide-Asn718+Gln-peptide	P	MS	Lys	Phe	Glu	Asn	Gln	Arg	Arg	Asn	Zhen et al., 2008	22394
cartilage intermediate layer protein 1	O75339	22-1184	peptide-Gln719+Arg-peptide	P	MS	Phe	Glu	Asn	Gln	Arg	Arg	Asn	Lys	Zhen et al., 2008	22395
cartilage intermediate layer protein 1	O75339	22-1184	peptide-Asn722+Lys-peptide	P	MS	Gln	Arg	Arg	Asn	Lys	Arg	Glu	Asp	Zhen et al., 2008
Catalase HPII	P21179	600-621	peptide-Glu610+Val-peptide	N	MS	Leu	Asn	Asp	Glu	Val	Arg	Ser	Ala	Biniossek et al., 2016
Chaperone protein ClpB	P63284	820-842	peptide-Gln823+Gln-peptide	N	MS	Ala	Ile	Gln	Gln	Gln	Ile	Glu	Asn	Biniossek et al., 2016
Chaperone protein ClpB	P63284	301-325	peptide-Leu303+Ala-peptide	N	MS	Lys	Pro	Ala	Leu	Ala	Arg	Gly	Glu	Biniossek et al., 2016
Chaperone protein ClpB	P63284	641-681	peptide-Glu664+Ala-peptide	N	MS	Tyr	Leu	Thr	Glu	Ala	Val	Arg	Arg	Biniossek et al., 2016
Chaperone protein ClpB	P63284	101-127	peptide-Glu117+Ser-peptide	N	MS	Ala	Ala	Leu	Glu	Ser	Arg	Gly	Thr	Biniossek et al., 2016
Chaperone protein DnaK	P0A6Y8	364-387	peptide-Ala376+Val-peptide	N	MS	Ile	Gly	Ala	Ala	Val	Gln	Gly	Gly	Biniossek et al., 2016
Chaperone protein DnaK	P0A6Y8	4-55	peptide-Asn29+Ala-peptide	N	MS	Val	Leu	Glu	Asn	Ala	Glu	Gly	Asp	Biniossek et al., 2016
Chaperone protein DnaK	P0A6Y8	305-321	peptide-Ser307+Leu-peptide	N	MS	Lys	Leu	Glu	Ser	Leu	Val	Glu	Asp	Biniossek et al., 2016
Chaperone protein HtpG	P0A6Z3	148-169	peptide-Glu155+Ser-peptide	N	MS	Val	Phe	Trp	Glu	Ser	Ala	Gly	Glu	Biniossek et al., 2016
CILP2 cartilage intermediate layer protein 2	Q8IUL8	21-1156	peptide-Ala811+Thr-peptide	P	MS	Leu	Val	Thr	Ala	Thr	Leu	Gly	Gly	Zhen et al., 2008	22396
CILP2 cartilage intermediate layer protein 2	Q8IUL8	21-1156	peptide-Ala830+Thr-peptide	P	MS	Pro	Leu	Pro	Ala	Thr	Val	Gly	Val	Zhen et al., 2008	22397
CILP2 cartilage intermediate layer protein 2	Q8IUL8	21-1156	peptide-Leu813+Gly-peptide	P	MS	Thr	Ala	Thr	Leu	Gly	Gly	Glu	Glu	Zhen et al., 2008	22398
CILP2 cartilage intermediate layer protein 2	Q8IUL8	21-1156	peptide-Val832+Gly-peptide	P	MS	Pro	Ala	Thr	Val	Gly	Val	Thr	Gln	Zhen et al., 2008	22399
CILP2 cartilage intermediate layer protein 2	Q8IUL8	21-1156	peptide-Thr810+Ala-peptide	P	MS	Ala	Leu	Val	Thr	Ala	Thr	Leu	Gly	Zhen et al., 2008	22400
clusterin isoform 2	P10909	23-449	peptide-Gly22+Asp-peptide	P	MS	Gln	Val	Leu	Gly	Asp	Gln	Thr	Val	Zhen et al., 2008	22419
clusterin isoform 2	P10909	23-449	peptide-Asn43+Lys-peptide	P	MS	Lys	Tyr	Val	Asn	Lys	Glu	Ile	Gln	Zhen et al., 2008	22420
collagen alpha-1(II) chain	P02458	182-1241	peptide-Ala902+Gly-peptide	P	MS	Pro	Gly	Ala	Ala	Gly	Arg	Val	Gly	Zhen et al., 2008	22612
collagen alpha-1(II) chain	P02458	182-1241	peptide-Pro922+Ser-peptide	P	MS	Pro	Pro	Gly	Pro	Ser	Gly	Lys	Asp	Zhen et al., 2008	22613
collagen alpha-1(II) chain	P02458	182-1241	peptide-Ser923+Gly-peptide	P	MS	Pro	Gly	Pro	Ser	Gly	Lys	Asp	Gly	Zhen et al., 2008	22614
collagen alpha-1(II) chain	P02458	182-1241	peptide-Gly1053+Val-peptide	P	MS	Gly	Ala	Ala	Gly	Val	Lys	Gly	Asp	Zhen et al., 2008	22615
collagen alpha-1(II) chain	P02458	182-1241	peptide-Pro1078+Ala-peptide	P	MS	Ser	Pro	Gly	Pro	Ala	Gly	Pro	Thr	Zhen et al., 2008	22616
collagen alpha-1(III) chain	P02461	154-1221	peptide-Gln374+Gly-peptide	P	MS	Pro	Gly	Pro	Gln	Gly	His	Ala	Gly	Zhen et al., 2008	22838
collagen alpha-1(III) chain	P02461	154-1221	peptide-Asn389+Gly-peptide	P	MS	Pro	Gly	Ile	Asn	Gly	Ser	Pro	Gly	Zhen et al., 2008	22839
CTP synthase	P0A7E5	19-40	peptide-Glu30+Ala-peptide	N	MS	Ala	Ile	Leu	Glu	Ala	Arg	Gly	Leu	Biniossek et al., 2016
Cytochrome bd-I ubiquinol oxidase subunit 1	P0ABJ9	324-348	peptide-Gln330+Leu-peptide	N	MS	Leu	Leu	Glu	Gln	Leu	Arg	Ser	Gly	Biniossek et al., 2016
Cytosol aminopeptidase	P68767	96-118	peptide-Glu107+Ala-peptide	N	MS	Gly	Ser	Met	Glu	Ala	Val	Cys	Phe	Biniossek et al., 2016
Cytosol non-specific dipeptidase	P15288	440-480	peptide-Glu466+Ser-peptide	N	MS	Val	His	Ile	Glu	Ser	Val	Gly	His	Biniossek et al., 2016
D-galactose-binding periplasmic protein	P0AEE5	227-246	peptide-Met237+Ala-peptide	N	MS	Asn	Asp	Ala	Met	Ala	Met	Gly	Ala	Biniossek et al., 2016
D-lactate dehydrogenase	P52643	272-320	peptide-Glu302+Ala-peptide	N	MS	Leu	Thr	Ala	Glu	Ala	Leu	Thr	Ser	Biniossek et al., 2016
D-ribose pyranase	P04982	40-74	peptide-Gln53+Val-peptide	N	MS	Ser	Phe	Met	Gln	Val	Leu	Gly	Val	Biniossek et al., 2016
D-tagatose-1,6-bisphosphate aldolase subunit GatY	P0C8J6	162-193	peptide-Glu165+Ala-peptide	N	MS	Glu	Phe	Ala	Glu	Ala	Thr	Gly	Ile	Biniossek et al., 2016
D-tagatose-1,6-bisphosphate aldolase subunit GatY	P0C8J6	162-193	peptide-Tyr183+Ala-peptide	N	MS	His	Gly	Met	Tyr	Ala	Ser	Ala	Pro	Biniossek et al., 2016
D-tagatose-1,6-bisphosphate aldolase subunit GatZ	P0C8J8	290-308	peptide-Phe293+Ala-peptide	N	MS	Glu	Ala	Ile	Phe	Ala	Leu	Ala	Gln	Biniossek et al., 2016
D-tagatose-1,6-bisphosphate aldolase subunit GatZ	P0C8J8	203-279	peptide-Glu269+Leu-peptide	N	MS	Ala	Tyr	Trp	Glu	Leu	Val	Arg	Asp	Biniossek et al., 2016
decorin	P07585	31-359	peptide-Leu85+Leu-peptide	P	MS	Asp	Thr	Thr	Leu	Leu	Asp	Leu	Gln	Zhen et al., 2008	22429
decorin	P07585	31-359	peptide-Lys74+Val-peptide	P	MS	Gly	Leu	Asp	Lys	Val	Pro	Lys	Asp	Zhen et al., 2008	22430
Delta-aminolevulinic acid dehydratase	P0ACB2	281-292	peptide-Ala283+Leu-peptide	N	MS	Lys	Phe	Ala	Ala	Leu	Ala	Gly	Ala	Biniossek et al., 2016
Deoxyribose-phosphate aldolase	P0A6L0	62-123	peptide-Ala109+Leu-peptide	N	MS	Pro	Tyr	Arg	Ala	Leu	Met	Ala	Gly	Biniossek et al., 2016
DNA gyrase subunit A	P0AES4	676-702	peptide-Asp686+Leu-peptide	N	MS	Ile	Gly	Val	Asp	Leu	Thr	Ser	Gly	Biniossek et al., 2016
DNA gyrase subunit B	P0AES6	461-480	peptide-Glu466+Val-peptide	N	MS	Ser	Ser	Gln	Glu	Val	Ala	Thr	Leu	Biniossek et al., 2016
DNA gyrase subunit B	P0AES6	77-103	peptide-Glu86+Gly-peptide	N	MS	His	Pro	Glu	Glu	Gly	Val	Ser	Ala	Biniossek et al., 2016
DNA protection during starvation protein	P0ABT2	28-48	peptide-Glu31+Leu-peptide	N	MS	Ala	Thr	Val	Glu	Leu	Leu	Asn	Arg	Biniossek et al., 2016
DNA-binding protein H-NS	P0ACF8	63-83	peptide-Met64+Leu-peptide	N	MS	Tyr	Arg	Glu	Met	Leu	Ile	Ala	Asp	Biniossek et al., 2016
DNA-binding protein HU-alpha	P0ACF0	38-51	peptide-Gln43+Leu-peptide	N	MS	Asp	Ala	Val	Gln	Leu	Val	Gly	Phe	Biniossek et al., 2016
DNA-binding protein HU-beta	P0ACF4	19-37	peptide-Ala20+Ala-peptide	N	MS	Ser	Lys	Ala	Ala	Ala	Gly	Arg	Ala	Biniossek et al., 2016
DNA-binding transcriptional regulator BolA	P0ABE2	41-83	peptide-Glu67+Leu-peptide	N	MS	Leu	Ala	Glu	Glu	Leu	Ser	Thr	Thr	Biniossek et al., 2016
DNA-directed RNA polymerase subunit alpha	P0A7Z4	26-71	peptide-Cys54+Ala-peptide	N	MS	Met	Pro	Gly	Cys	Ala	Val	Thr	Glu	Biniossek et al., 2016
DNA-directed RNA polymerase subunit beta	P0A8V2	865-886	peptide-Glu876+Val-peptide	N	MS	Ile	Gly	Ala	Glu	Val	Thr	Gly	Gly	Biniossek et al., 2016
Dual-specificity RNA methyltransferase RlmN	P36979	73-94	peptide-Glu76+Ile-peptide	N	MS	Glu	Val	Ala	Glu	Ile	Arg	Ala	Pro	Biniossek et al., 2016
Elongation factor G	P0A6M8	190-236	peptide-Glu224+Ser-peptide	N	MS	Asn	Leu	Ile	Glu	Ser	Ala	Ala	Glu	Biniossek et al., 2016
Elongation factor G	P0A6M8	476-485	peptide-Glu480+Ala-peptide	N	MS	Phe	Asn	Val	Glu	Ala	Asn	Val	Gly	Biniossek et al., 2016
Elongation factor G	P0A6M8	162-187	peptide-Leu171+Ala-peptide	N	MS	Pro	Leu	Gln	Leu	Ala	Ile	Gly	Ala	Biniossek et al., 2016
Elongation factor G	P0A6M8	190-236	peptide-Ala226+Ala-peptide	N	MS	Ile	Glu	Ser	Ala	Ala	Glu	Ala	Ser	Biniossek et al., 2016
Elongation factor G	P0A6M8	40-77	peptide-Ala66+Ala-peptide	N	MS	Ile	Thr	Ser	Ala	Ala	Thr	Thr	Ala	Biniossek et al., 2016
Elongation factor Ts	P0A6P1	168-177	peptide-Met171+His-peptide	N	MS	His	Ile	Ala	Met	His	Val	Ala	Ala	Biniossek et al., 2016
Elongation factor Ts	P0A6P1	135-151	peptide-Ala137+Leu-peptide	N	MS	Arg	Val	Ala	Ala	Leu	Glu	Gly	Asp	Biniossek et al., 2016
Elongation factor Ts	P0A6P1	168-177	peptide-His172+Val-peptide	N	MS	Ile	Ala	Met	His	Val	Ala	Ala	Ser	Biniossek et al., 2016
Elongation factor Ts	P0A6P1	26-43	peptide-Glu29+Ala-peptide	N	MS	Ala	Leu	Thr	Glu	Ala	Asn	Gly	Asp	Biniossek et al., 2016
Elongation factor Tu 1	P0CE47	91-117	peptide-Gln98+Met-peptide	N	MS	Gly	Ala	Ala	Gln	Met	Asp	Gly	Ala	Biniossek et al., 2016
Elongation factor Tu 1	P0CE47	91-117	peptide-Ala97+Gln-peptide	N	MS	Thr	Gly	Ala	Ala	Gln	Met	Asp	Gly	Biniossek et al., 2016
Elongation factor Tu 1	P0CE47	156-172	peptide-Ser159+Gln-peptide	N	MS	Glu	Leu	Leu	Ser	Gln	Tyr	Asp	Phe	Biniossek et al., 2016
Elongation factor Tu 1	P0CE47	189-205	peptide-Glu191+Leu-peptide	N	MS	Lys	Ile	Leu	Glu	Leu	Ala	Gly	Phe	Biniossek et al., 2016
Elongation factor Tu 1	P0CE47	138-155	peptide-Glu148+Leu-peptide	N	MS	Glu	Leu	Leu	Glu	Leu	Val	Glu	Met	Biniossek et al., 2016
Elongation factor Tu 1	P0CE47	326-358	peptide-Glu349+Met-peptide	N	MS	Glu	Gly	Val	Glu	Met	Val	Met	Pro	Biniossek et al., 2016
Elongation factor Tu 1	P0CE47	91-137	peptide-Pro114+Gln-peptide	N	MS	Gly	Pro	Met	Pro	Gln	Thr	Arg	Glu	Biniossek et al., 2016
Elongation factor Tu 1	P0CE47	138-177	peptide-Glu153+Val-peptide	N	MS	Val	Glu	Met	Glu	Val	Arg	Glu	Leu	Biniossek et al., 2016
Elongation factor Tu 1	P0CE47	326-358	peptide-Val348+Glu-peptide	N	MS	Pro	Glu	Gly	Val	Glu	Met	Val	Met	Biniossek et al., 2016
Elongation factor Tu 1	P0CE47	359-391	peptide-Phe375+Ala-peptide	N	MS	Gly	Leu	Arg	Phe	Ala	Ile	Arg	Glu	Biniossek et al., 2016
Elongation factor Tu 1	P0CE47	265-283	peptide-Glu268+Gly-peptide	N	MS	Leu	Leu	Asp	Glu	Gly	Arg	Ala	Gly	Biniossek et al., 2016
Elongation factor Tu 1	P0CE47	210-238	peptide-Ser222+Gly-peptide	N	MS	Phe	Ser	Ile	Ser	Gly	Arg	Gly	Thr	Biniossek et al., 2016
Enolase	P0A6P9	201-231	peptide-Glu221+Ala-peptide	N	MS	Ser	Asn	Ala	Glu	Ala	Leu	Ala	Val	Biniossek et al., 2016
Enolase	P0A6P9	144-177	peptide-Glu158+His-peptide	N	MS	Asn	Gly	Gly	Glu	His	Ala	Asp	Asn	Biniossek et al., 2016
Enolase	P0A6P9	67-82	peptide-Ala70+Val-peptide	N	MS	Ala	Val	Ala	Ala	Val	Asn	Gly	Pro	Biniossek et al., 2016
Enolase	P0A6P9	181-195	peptide-Ala182+Ile-peptide	N	MS	Val	Lys	Glu	Ala	Ile	Arg	Met	Gly	Biniossek et al., 2016
Enoyl-[acyl-carrier-protein] reductase [NADH] FabI	P0AEK4	18-43	peptide-Met28+His-peptide	N	MS	Ala	Gln	Ala	Met	His	Arg	Glu	Gly	Biniossek et al., 2016
Enoyl-[acyl-carrier-protein] reductase [NADH] FabI	P0AEK4	18-43	peptide-Ala27+Met-peptide	N	MS	Ile	Ala	Gln	Ala	Met	His	Arg	Glu	Biniossek et al., 2016
Exoribonuclease 2	P30850	517-522	peptide-Thr519+Ala-peptide	N	MS	Lys	Gly	Glu	Thr	Ala	Thr	Arg	Pro	Biniossek et al., 2016
fibromodulin	P13605	19-376	peptide-Tyr63+Ala-peptide	P		Gly	Pro	Ala	Tyr	Ala	Tyr	Gly	Ser	Fushimi et al., 2008	20324
fibronectin	P02751	32-2386	peptide-Phe2022+Val-peptide	P	MS	Lys	Thr	Pro	Phe	Val	Thr	His	Pro	Zhen et al., 2008
fibronectin	P02751	32-2386	peptide-Pro2044+Ser-peptide	P	MS	Gly	Gln	Gln	Pro	Ser	Val	Gly	Gln	Zhen et al., 2008
FKBP-type peptidyl-prolyl cis-trans isomerase FkpA	P45523	48-65	peptide-Tyr50+Ala-peptide	N	MS	Lys	Ser	Ala	Tyr	Ala	Leu	Gly	Ala	Biniossek et al., 2016
FKBP-type peptidyl-prolyl cis-trans isomerase SlyD	P0A9K9	6-57	peptide-Ser40+Leu-peptide	N	MS	Gly	His	Gly	Ser	Leu	Ile	Ser	Gly	Biniossek et al., 2016
Flavodoxin 1	P61949	1-20	peptide-Gly5+Ile-peptide	N	MS	Ala	Ile	Thr	Gly	Ile	Phe	Phe	Gly	Biniossek et al., 2016
Formate acetyltransferase 1	P09373	597-615	peptide-Ser603+Val-peptide	N	MS	Pro	Thr	Gln	Ser	Val	Leu	Thr	Ile	Biniossek et al., 2016
Formate acetyltransferase 1	P09373	297-312	peptide-Glu301+Ala-peptide	N	MS	Thr	Glu	Gln	Glu	Ala	Gln	Glu	Met	Biniossek et al., 2016
Formate acetyltransferase 1	P09373	241-268	peptide-Glu254+Ala-peptide	N	MS	Asn	Ala	Gln	Glu	Ala	Ile	Gln	Trp	Biniossek et al., 2016
Formate acetyltransferase 1	P09373	714-725	peptide-Met715+Leu-peptide	N	MS	Asn	Arg	Glu	Met	Leu	Leu	Asp	Ala	Biniossek et al., 2016
Formate acetyltransferase 1	P09373	33-57	peptide-Phe43+Leu-peptide	N	MS	Asp	Glu	Ser	Phe	Leu	Ala	Gly	Ala	Biniossek et al., 2016
Formate acetyltransferase 1	P09373	505-517	peptide-Tyr507+Glu-peptide	N	MS	Lys	Tyr	Ser	Tyr	Glu	Ala	Ser	Leu	Biniossek et al., 2016
Formate acetyltransferase 1	P09373	33-57	peptide-Gly46+Ala-peptide	N	MS	Phe	Leu	Ala	Gly	Ala	Thr	Glu	Ala	Biniossek et al., 2016
Formate acetyltransferase 1	P09373	297-312	peptide-Glu304+Met-peptide	N	MS	Glu	Ala	Gln	Glu	Met	Val	Asp	His	Biniossek et al., 2016
Formate acetyltransferase 1	P09373	33-57	peptide-Ala45+Gly-peptide	N	MS	Ser	Phe	Leu	Ala	Gly	Ala	Thr	Glu	Biniossek et al., 2016
Formate acetyltransferase 1	P09373	490-504	peptide-Thr493+Ala-peptide	N	MS	Gln	Tyr	Ile	Thr	Ala	Leu	Asn	Ile	Biniossek et al., 2016
Formate acetyltransferase 1	P09373	269-293	peptide-Phe277+Gly-peptide	N	MS	Ala	Met	Ser	Phe	Gly	Arg	Thr	Ser	Biniossek et al., 2016
Formate dehydrogenase-O major subunit	P32176	842-877	peptide-Phe876+Lys-peptide	N	MS	Ala	Arg	Ile	Phe	Lys	Asp	Asp	Ala	Biniossek et al., 2016
Formate dehydrogenase-O major subunit	P32176	806-841	peptide-Glu831+Gly-peptide	N	MS	Met	Gln	Gln	Glu	Gly	Met	Gly	Arg	Biniossek et al., 2016
Formate-dependent phosphoribosylglycinamide formyltransferase	P33221	110-155	peptide-Glu143+Ala-peptide	N	MS	Leu	Phe	Arg	Glu	Ala	Val	Ala	Asp	Biniossek et al., 2016
Fructokinase	P23917	270-283	peptide-Val272+Phe-peptide	N	MS	Lys	Gln	Phe	Val	Phe	Gly	Gly	Glu	Biniossek et al., 2016
Fructose-bisphosphate aldolase class 2	P0AB71	76-114	peptide-Glu99+His-peptide	N	MS	Gln	Met	Ala	Glu	His	Tyr	Gly	Val	Biniossek et al., 2016
Fumarate hydratase class I, aerobic	P0AC33	369-382	peptide-Ala372+Gln-peptide	N	MS	Glu	Ile	Leu	Ala	Gln	Leu	Ser	Gln	Biniossek et al., 2016
Fumarate hydratase class I, aerobic	P0AC33	444-463	peptide-Gln452+Ala-peptide	N	MS	Asp	Gln	Leu	Gln	Ala	Gln	Gly	Gly	Biniossek et al., 2016
Fumarate hydratase class I, aerobic	P0AC33	216-243	peptide-Phe231+Val-peptide	N	MS	His	Ile	Ala	Phe	Val	Ile	Gly	Gly	Biniossek et al., 2016
Fumarate reductase iron-sulfur subunit	P0AC47	143-179	peptide-Glu167+Phe-peptide	N	MS	Leu	Asn	Pro	Glu	Phe	Ile	Gly	Pro	Biniossek et al., 2016
Glucose-1-phosphate thymidylyltransferase 1	P37744	64-81	peptide-Gln66+Leu-peptide	N	MS	Arg	Phe	Gln	Gln	Leu	Leu	Gly	Asp	Biniossek et al., 2016
Glutamate decarboxylase alpha	P69908	39-57	peptide-Phe43+Gln-peptide	N	MS	Asp	Val	Ala	Phe	Gln	Ile	Ile	Asn	Biniossek et al., 2016
Glutamate decarboxylase alpha	P69908	155-168	peptide-Asn156+Leu-peptide	N	MS	Asp	Lys	Pro	Asn	Leu	Val	Cys	Gly	Biniossek et al., 2016
Glutamate decarboxylase alpha	P69908	5-21	peptide-Glu12+Leu-peptide	N	MS	Phe	Arg	Ser	Glu	Leu	Leu	Asp	Ser	Biniossek et al., 2016
Glutaminase 1	P77454	224-259	peptide-Tyr244+Gly-peptide	N	MS	Glu	Gly	Leu	Tyr	Gly	Arg	Ser	Gly	Biniossek et al., 2016
Glutamine--fructose-6-phosphate aminotransferase [isomerizing]	P17169	541-592	peptide-Gln582+Leu-peptide	N	MS	Val	Pro	Leu	Gln	Leu	Leu	Ala	Tyr	Biniossek et al., 2016
Glutamine--fructose-6-phosphate aminotransferase [isomerizing]	P17169	532-592	peptide-Glu570+Val-peptide	N	MS	His	Val	Glu	Glu	Val	Ile	Ala	Pro	Biniossek et al., 2016
Glutaredoxin 4	P0AC69	65-101	peptide-Tyr91+Gln-peptide	N	MS	Ile	Glu	Met	Tyr	Gln	Arg	Gly	Glu	Biniossek et al., 2016
Glutaredoxin 4	P0AC69	27-64	peptide-Ala41+Ala-peptide	N	MS	Gln	Ala	Leu	Ala	Ala	Cys	Gly	Glu	Biniossek et al., 2016
Glutaredoxin 4	P0AC69	8-22	peptide-Arg10+Gln-peptide	N	MS	Lys	Ile	Gln	Arg	Gln	Ile	Ala	Glu	Biniossek et al., 2016
Glyceraldehyde-3-phosphate dehydrogenase A	P0A9B2	85-107	peptide-Glu95+Ala-peptide	N	MS	Val	Val	Ala	Glu	Ala	Thr	Gly	Leu	Biniossek et al., 2016
Glycerol kinase	P0A6F3	221-233	peptide-Glu223+Val-peptide	N	MS	Arg	Ser	Ser	Glu	Val	Tyr	Gly	Gln	Biniossek et al., 2016
Glycerol kinase	P0A6F3	204-233	peptide-Arg220+Ser-peptide	N	MS	Glu	Val	Arg	Arg	Ser	Ser	Glu	Val	Biniossek et al., 2016
Glycerol kinase	P0A6F3	204-233	peptide-Glu217+Val-peptide	N	MS	Met	Leu	Pro	Glu	Val	Arg	Arg	Ser	Biniossek et al., 2016
Glycerophosphodiester phosphodiesterase, periplasmic	P09394	269-295	peptide-Met283+Leu-peptide	N	MS	Asp	Tyr	His	Met	Leu	Ile	Glu	Glu	Biniossek et al., 2016
Glycerophosphodiester phosphodiesterase, periplasmic	P09394	269-295	peptide-Tyr273+Ala-peptide	N	MS	Val	Ala	Glu	Tyr	Ala	Asp	Gly	Ile	Biniossek et al., 2016
Glycerophosphodiester phosphodiesterase, periplasmic	P09394	226-247	peptide-Glu229+Leu-peptide	N	MS	Met	Gly	Met	Glu	Leu	Asn	Leu	Val	Biniossek et al., 2016
Glycerophosphodiester phosphodiesterase, periplasmic	P09394	52-70	peptide-Tyr55+Ala-peptide	N	MS	Ala	Met	Ala	Tyr	Ala	Gln	Gly	Ala	Biniossek et al., 2016
Glycerophosphodiester phosphodiesterase, periplasmic	P09394	205-216	peptide-Leu207+Gln-peptide	N	MS	Lys	Val	Tyr	Leu	Gln	Cys	Phe	Asp	Biniossek et al., 2016
Glycine dehydrogenase (decarboxylating)	P33195	206-237	peptide-Gln218+Gln-peptide	N	MS	Val	Leu	Leu	Gln	Gln	Val	Gly	Thr	Biniossek et al., 2016
Glycine--tRNA ligase alpha subunit	P00960	170-192	peptide-Tyr173+Ile-peptide	N	MS	Leu	Ala	Met	Tyr	Ile	Gln	Gly	Val	Biniossek et al., 2016
Glycine--tRNA ligase beta subunit	P00961	634-645	peptide-Glu643+Leu-peptide	N	MS	Glu	Leu	Ala	Glu	Leu	Arg	Glu	Pro	Biniossek et al., 2016
Glycine--tRNA ligase beta subunit	P00961	476-494	peptide-Ala479+Leu-peptide	N	MS	Asp	Pro	Phe	Ala	Leu	Arg	Arg	Ala	Biniossek et al., 2016
Glyoxylate/hydroxypyruvate reductase A	P75913	59-73	peptide-Phe61+Ala-peptide	N	MS	Lys	Ala	Val	Phe	Ala	Leu	Gly	Ala	Biniossek et al., 2016
Glyoxylate/hydroxypyruvate reductase B	P37666	10-63	peptide-Glu45+Ala-peptide	N	MS	Ile	Phe	Ala	Glu	Ala	Glu	Gly	Leu	Biniossek et al., 2016
GMP synthase [glutamine-hydrolyzing]	P04079	267-293	peptide-Glu271+Gln-peptide	N	MS	Asn	Glu	Ala	Glu	Gln	Val	Leu	Asp	Biniossek et al., 2016
GMP synthase [glutamine-hydrolyzing]	P04079	29-47	peptide-Glu35+Leu-peptide	N	MS	Val	Tyr	Cys	Glu	Leu	Trp	Ala	Trp	Biniossek et al., 2016
GTP cyclohydrolase-2	P0A7I7	104-128	peptide-Tyr105+Ala-peptide	N	MS	Ile	Arg	Ala	Tyr	Ala	Leu	Gln	Asp	Biniossek et al., 2016
HTH-type transcriptional regulator GntR	P0ACP5	265-317	peptide-Arg308+Ile-peptide	N	MS	Leu	Leu	Ala	Arg	Ile	Arg	Gly	Glu	Biniossek et al., 2016
HTH-type transcriptional repressor AllR	P0ACN4	20-36	peptide-Ala23+Leu-peptide	N	MS	Gly	Ala	Gln	Ala	Leu	Glu	Arg	Gly	Biniossek et al., 2016
Inorganic pyrophosphatase	P0A7A9	45-87	peptide-Ser64+Leu-peptide	N	MS	His	Thr	Leu	Ser	Leu	Asp	Gly	Asp	Biniossek et al., 2016
Isocitrate dehydrogenase [NADP]	P08200	243-265	peptide-Leu248+Ala-peptide	N	MS	Gly	Tyr	Gln	Leu	Ala	Arg	Glu	Glu	Biniossek et al., 2016
Isocitrate dehydrogenase [NADP]	P08200	74-100	peptide-Glu87+Thr-peptide	N	MS	Leu	Pro	Ala	Glu	Thr	Leu	Asp	Leu	Biniossek et al., 2016
KHG/KDPG aldolase	P0A955	63-102	peptide-Glu82+Val-peptide	N	MS	Gln	Leu	Ala	Glu	Val	Thr	Glu	Ala	Biniossek et al., 2016
KHG/KDPG aldolase	P0A955	63-102	peptide-Phe90+Ala-peptide	N	MS	Gly	Ala	Gln	Phe	Ala	Ile	Ser	Pro	Biniossek et al., 2016
L-glyceraldehyde 3-phosphate reductase	Q46851	52-97	peptide-Leu80+Leu-peptide	N	MS	Phe	Gly	Arg	Leu	Leu	Arg	Glu	Asp	Biniossek et al., 2016
L-serine dehydratase TdcG	P42630	315-327	peptide-Leu317+Ala-peptide	N	MS	Arg	Tyr	Phe	Leu	Ala	Ala	Gly	Ala	Biniossek et al., 2016
L-threonine dehydratase catabolic TdcB	P0AGF6	205-229	peptide-Ser219+Phe-peptide	N	MS	Met	Ala	Ala	Ser	Phe	His	Ser	Gly	Biniossek et al., 2016
Lactaldehyde dehydrogenase	P25553	83-96	peptide-Glu85+Ile-peptide	N	MS	Arg	Ala	Ser	Glu	Ile	Ser	Ala	Leu	Biniossek et al., 2016
Leucine--tRNA ligase	P07813	644-668	peptide-Glu657+Trp-peptide	N	MS	Met	Thr	Leu	Glu	Trp	Gln	Glu	Ser	Biniossek et al., 2016
Lysine--tRNA ligase	P0A8N3	353-364	peptide-Glu356+Ser-peptide	N	MS	Ala	Ile	Ala	Glu	Ser	Ile	Gly	Ile	Biniossek et al., 2016
Lysine--tRNA ligase, heat inducible	P0A8N5	353-364	peptide-Glu356+Ser-peptide	N	MS	Ala	Leu	Ala	Glu	Ser	Ile	Gly	Ile	Biniossek et al., 2016
Lysine--tRNA ligase, heat inducible	P0A8N5	1-25	peptide-Glu5+Thr-peptide	N	MS	Ser	Glu	Gln	Glu	Thr	Arg	Gly	Ala	Biniossek et al., 2016
Malate dehydrogenase	P61889	280-300	peptide-Asn290+Ala-peptide	N	MS	Phe	Glu	Gln	Asn	Ala	Leu	Glu	Gly	Biniossek et al., 2016
Malonyl CoA-acyl carrier protein transacylase	P0AAI9	260-279	peptide-Ala265+Ala-peptide	N	MS	Glu	Tyr	Met	Ala	Ala	Gln	Gly	Val	Biniossek et al., 2016
Malonyl CoA-acyl carrier protein transacylase	P0AAI9	59-83	peptide-Leu66+Leu-peptide	N	MS	Gln	Pro	Ala	Leu	Leu	Thr	Ala	Ser	Biniossek et al., 2016
Malonyl CoA-acyl carrier protein transacylase	P0AAI9	1-58	peptide-Glu35+Ala-peptide	N	MS	Thr	Phe	Ala	Glu	Ala	Ser	Ala	Ala	Biniossek et al., 2016
Maltose/maltodextrin-binding periplasmic protein	P0AEX9	93-109	peptide-Tyr96+Ala-peptide	N	MS	Phe	Gly	Gly	Tyr	Ala	Gln	Ser	Gly	Biniossek et al., 2016
Maltose/maltodextrin-binding periplasmic protein	P0AEX9	129-145	peptide-Glu137+Ala-peptide	N	MS	Ile	Ala	Val	Glu	Ala	Leu	Ser	Leu	Biniossek et al., 2016
Maltose/maltodextrin-binding periplasmic protein	P0AEX9	73-92	peptide-Ala77+Ala-peptide	N	MS	Pro	Gln	Val	Ala	Ala	Thr	Gly	Asp	Biniossek et al., 2016
Mannitol-1-phosphate 5-dehydrogenase	P09424	310-322	peptide-Pro310+Leu-peptide	N	MS	Leu	Ile	Lys	Pro	Leu	Leu	Gly	Thr	Biniossek et al., 2016
Mannosylglycerate hydrolase	P54746	658-696	peptide-Tyr669+Val-peptide	N	MS	Met	Leu	Asn	Tyr	Val	Ala	Leu	Gln	Biniossek et al., 2016
Membrane protein insertase YidC	P25714	28-59	peptide-Gln34+Gln-peptide	N	MS	Pro	Gln	Ala	Gln	Gln	Thr	Thr	Gln	Biniossek et al., 2016
Methionine--tRNA ligase	P00959	421-440	peptide-Glu427+Val-peptide	N	MS	Asp	Ala	Ala	Glu	Val	Ile	Gly	Glu	Biniossek et al., 2016
Methylglyoxal synthase	P0A731	33-54	peptide-Tyr43+Ala-peptide	N	MS	His	Val	Leu	Tyr	Ala	Thr	Gly	Thr	Biniossek et al., 2016
NAD-dependent dihydropyrimidine dehydrogenase subunit PreT	P76440	58-81	peptide-Asn67+Ala-peptide	N	MS	Arg	Glu	Asn	Asn	Ala	Leu	Gly	Ala	Biniossek et al., 2016
NADH-quinone oxidoreductase subunit C/D	P33599	186-196	peptide-Glu191+Ala-peptide	N	MS	Leu	Glu	Met	Glu	Ala	Leu	Thr	Phe	Biniossek et al., 2016
NADH-quinone oxidoreductase subunit G	P33602	858-904	peptide-Gly887+Met-peptide	N	MS	Leu	Pro	Met	Gly	Met	Ser	Gly	Ile	Biniossek et al., 2016
NADP-dependent 3-hydroxy acid dehydrogenase YdfG	P39831	37-41	peptide-Glu39+Leu-peptide	N	MS	Arg	Leu	Gln	Glu	Leu	Lys	Asp	Glu	Biniossek et al., 2016
NH(3)-dependent NAD(+) synthetase	P18843	145-173	peptide-Glu165+Ala-peptide	N	MS	His	Ala	Ala	Glu	Ala	Ile	Thr	Gly	Biniossek et al., 2016
NH(3)-dependent NAD(+) synthetase	P18843	113-138	peptide-Ala121+Leu-peptide	N	MS	Ser	Glu	Gln	Ala	Leu	Arg	Glu	Ala	Biniossek et al., 2016
Nucleoid-associated protein YbaB	P0A8B5	24-43	peptide-Glu32+Val-peptide	N	MS	Ala	Gln	Leu	Glu	Val	Thr	Gly	Glu	Biniossek et al., 2016
OriC-binding nucleoid-associated protein	P64467	22-64	peptide-Glu49+Leu-peptide	N	MS	Arg	Arg	Ala	Glu	Leu	Val	Ser	Gly	Biniossek et al., 2016
Outer membrane porin C	P06996	63-102	peptide-Tyr79+Gln-peptide	N	MS	Gln	Trp	Glu	Tyr	Gln	Ile	Gln	Gly	Biniossek et al., 2016
Outer membrane protein A	P0A910	135-159	peptide-Pro142+Val-peptide	N	MS	Gly	Val	Ser	Pro	Val	Phe	Ala	Gly	Biniossek et al., 2016
Outer membrane protein A	P0A910	252-288	peptide-Glu275+Arg-peptide	N	MS	Gly	Leu	Ser	Glu	Arg	Arg	Ala	Gln	Biniossek et al., 2016
Outer membrane protein Slp	P37194	129-147	peptide-Glu135+Val-peptide	N	MS	Asn	Phe	Leu	Glu	Val	Asn	Met	Gln	Biniossek et al., 2016
Outer membrane protein X	P0A917	53-71	peptide-Gly61+Val-peptide	N	MS	Ser	Pro	Leu	Gly	Val	Ile	Gly	Ser	Biniossek et al., 2016
PEP-dependent dihydroxyacetone kinase, ADP-binding subunit DhaL	P76014	67-122	peptide-Met109+Phe-peptide	N	MS	Leu	Tyr	Gln	Met	Phe	Arg	Asp	Gly	Biniossek et al., 2016
PEP-dependent dihydroxyacetone kinase, phosphoryl donor subunit DhaM	P37349	95-119	peptide-Ala111+Ala-peptide	N	MS	Thr	Val	Ser	Ala	Ala	Ser	Gly	Ala	Biniossek et al., 2016
Peptide chain release factor RF2	P07012	75-109	peptide-Glu98+Ala-peptide	N	MS	Thr	Phe	Asn	Glu	Ala	Val	Ala	Glu	Biniossek et al., 2016
Peptidyl-prolyl cis-trans isomerase B	P23869	88-135	peptide-Glu125+Val-peptide	N	MS	Val	Phe	Ala	Glu	Val	Val	Asp	Gly	Biniossek et al., 2016
PFL-like enzyme TdcE	P42632	298-316	peptide-Gln305+Ala-peptide	N	MS	Asn	Glu	Gln	Gln	Ala	Gln	Glu	Leu	Biniossek et al., 2016
PFL-like enzyme TdcE	P42632	298-316	peptide-Glu308+Leu-peptide	N	MS	Gln	Ala	Gln	Glu	Leu	Ile	Asp	His	Biniossek et al., 2016
PFL-like enzyme TdcE	P42632	298-316	peptide-Glu303+Gln-peptide	N	MS	Val	Leu	Asn	Glu	Gln	Gln	Ala	Gln	Biniossek et al., 2016
PFL-like enzyme TdcE	P42632	252-272	peptide-Glu258+Ala-peptide	N	MS	Asn	Ala	Gln	Glu	Ala	Val	Gln	Trp	Biniossek et al., 2016
Phage shock protein A	P0AFM6	192-201	peptide-Glu199+Leu-peptide	N	MS	Gln	Phe	Ala	Glu	Leu	Lys	Ala	Asp	Biniossek et al., 2016
Phenylalanine--tRNA ligase alpha subunit	P08312	266-281	peptide-Glu268+Val-peptide	N	MS	Lys	Trp	Leu	Glu	Val	Leu	Gly	Cys	Biniossek et al., 2016
Phenylalanine--tRNA ligase alpha subunit	P08312	76-179	peptide-Leu165+Leu-peptide	N	MS	Thr	Thr	Arg	Leu	Leu	Arg	Thr	Gln	Biniossek et al., 2016
Phenylalanine--tRNA ligase beta subunit	P07395	506-519	peptide-Glu509+Val-peptide	N	MS	Gly	Tyr	Gln	Glu	Val	Ile	Thr	Tyr	Biniossek et al., 2016
Phosphate-binding protein PstS	P0AG82	6-43	peptide-Ala25+Glu-peptide	N	MS	Ser	Val	Phe	Ala	Glu	Ala	Ser	Leu	Biniossek et al., 2016
Phosphocarrier protein HPr	P0AA04	50-72	peptide-Gly54+Leu-peptide	N	MS	Gln	Thr	Leu	Gly	Leu	Thr	Gln	Gly	Biniossek et al., 2016
Phosphoenolpyruvate carboxykinase (ATP)	P22259	429-448	peptide-Gln430+Ala-peptide	N	MS	Lys	Arg	Met	Gln	Ala	Ala	Gly	Ala	Biniossek et al., 2016
Phosphoenolpyruvate carboxykinase (ATP)	P22259	155-164	peptide-Glu159+Leu-peptide	N	MS	Ser	Asp	Glu	Glu	Leu	Ala	Gly	Phe	Biniossek et al., 2016
Phosphoenolpyruvate-protein phosphotransferase	P08839	547-567	peptide-Glu550+Gln-peptide	N	MS	Val	Leu	Ala	Glu	Gln	Ala	Leu	Ala	Biniossek et al., 2016
Phosphoenolpyruvate-protein phosphotransferase	P08839	319-340	peptide-Glu322+Ala-peptide	N	MS	Ala	Val	Ala	Glu	Ala	Cys	Gly	Ser	Biniossek et al., 2016
Phosphoenolpyruvate-protein phosphotransferase	P08839	70-94	peptide-Met78+Leu-peptide	N	MS	Gly	His	Ile	Met	Leu	Leu	Glu	Asp	Biniossek et al., 2016
Phosphoglucomutase	P36938	204-226	peptide-Glu213+Gly-peptide	N	MS	Pro	Phe	Val	Glu	Gly	Leu	Ala	Asp	Biniossek et al., 2016
Phosphoglycerate kinase	P0A799	259-272	peptide-Glu262+Phe-peptide	N	MS	Val	Ala	Thr	Glu	Phe	Ser	Glu	Thr	Biniossek et al., 2016
Phosphoglycerate kinase	P0A799	94-113	peptide-Tyr95+Leu-peptide	N	MS	Val	Lys	Asp	Tyr	Leu	Asp	Gly	Val	Biniossek et al., 2016
Phosphoglycerate kinase	P0A799	279-299	peptide-Glu281+Gln-peptide	N	MS	Lys	Ala	Asp	Glu	Gln	Ile	Leu	Asp	Biniossek et al., 2016
Phosphopentomutase	P0A6K6	64-96	peptide-Glu81+Val-peptide	N	MS	Gly	Asn	Ala	Glu	Val	Ile	Gly	Ala	Biniossek et al., 2016
Phosphoribosylamine--glycine ligase	P15640	117-136	peptide-Asn124+Phe-peptide	N	MS	Glu	Tyr	Gln	Asn	Phe	Thr	Glu	Val	Biniossek et al., 2016
Potassium binding protein Kbp	P0ADE6	70-88	peptide-Ile70+Leu-peptide	N	MS	Lys	Glu	Lys	Ile	Leu	Val	Ala	Val	Biniossek et al., 2016
Probable aminoglycoside efflux pump	P24177	228-247	peptide-Asn235+Ala-peptide	N	MS	Ala	Thr	Ile	Asn	Ala	Gln	Ser	Leu	Biniossek et al., 2016
Probable dehydratase PflD	P32674	609-636	peptide-His622+Val-peptide	N	MS	Val	Ser	Ala	His	Val	Pro	Leu	Gly	Biniossek et al., 2016
Probable L,D-transpeptidase YbiS	P0AAX8	81-109	peptide-Gln90+Leu-peptide	N	MS	Ile	Pro	Gln	Gln	Leu	Ile	Leu	Pro	Biniossek et al., 2016
prolargin	P51888	21-382	peptide-His340+Asp-peptide	P	MS	Val	Ala	Phe	His	Asp	Phe	Ser	Ser	Zhen et al., 2008	22571
prolargin	P51888	21-382	peptide-His351+Leu-peptide	P	MS	Asn	Val	Pro	His	Leu	Arg	Tyr	Leu	Zhen et al., 2008
Proline--tRNA ligase	P16659	159-183	peptide-Glu168+Ser-peptide	N	MS	Thr	Ser	Gln	Glu	Ser	Leu	Gln	Glu	Biniossek et al., 2016
Proline--tRNA ligase	P16659	516-537	peptide-Glu524+Leu-peptide	N	MS	Ala	Asp	Met	Glu	Leu	Ile	Gly	Ile	Biniossek et al., 2016
Proline--tRNA ligase	P16659	496-513	peptide-Glu499+Leu-peptide	N	MS	Leu	Tyr	Ser	Glu	Leu	Arg	Ala	Gln	Biniossek et al., 2016
Protein FdhE	P13024	188-211	peptide-Pro191+Val-peptide	N	MS	Gln	Tyr	Cys	Pro	Val	Cys	Gly	Ser	Biniossek et al., 2016
Protein MtfA	P76346	8-38	peptide-Glu21+Ala-peptide	N	MS	Pro	Trp	Gln	Glu	Ala	Leu	Ser	Ile	Biniossek et al., 2016
Protein translocase subunit SecA	P10408	751-764	peptide-Glu752+Val-peptide	N	MS	Arg	Lys	Glu	Glu	Val	Val	Gly	Ala	Biniossek et al., 2016
Protein YgiW	P0ADU5	54-79	peptide-Thr62+Leu-peptide	N	MS	Thr	Trp	Val	Thr	Leu	Arg	Gly	Asn	Biniossek et al., 2016
Protein YihD	P0ADP9	35-55	peptide-Asp44+Leu-peptide	N	MS	Glu	Leu	Ala	Asp	Leu	Thr	Asp	Asp	Biniossek et al., 2016
Protein-export protein SecB	P0AG86	42-61	peptide-Ser49+Gln-peptide	N	MS	Thr	Ala	Ser	Ser	Gln	Leu	Ala	Asp	Biniossek et al., 2016
Protein/nucleic acid deglycase 3	Q46948	78-93	peptide-Cys81+Phe-peptide	N	MS	Gly	Ala	Glu	Cys	Phe	Arg	Asp	Ser	Biniossek et al., 2016
Purine nucleoside phosphorylase DeoD-type	P0ABP8	174-196	peptide-Glu182+Ala-peptide	N	MS	Val	Glu	Met	Glu	Ala	Ala	Gly	Ile	Biniossek et al., 2016
Putative membrane protein IgaA homolog	P45800	479-493	peptide-Asp485+Asp-peptide	N	MS	Val	Leu	Leu	Asp	Asp	Phe	Gly	Asp	Biniossek et al., 2016
Putative uncharacterized protein YdfE	Q47138	70-84	peptide-Leu72+Asp-peptide	N	MS	Arg	Pro	Ala	Leu	Asp	Ser	Trp	Asp	Biniossek et al., 2016
Pyruvate dehydrogenase E1 component	P0AFG8	727-748	peptide-Gln728+Leu-peptide	N	MS	Gly	Lys	Val	Gln	Leu	Leu	Gly	Ser	Biniossek et al., 2016
Pyruvate dehydrogenase [ubiquinone]	P07003	472-503	peptide-Glu492+Ala-peptide	N	MS	Arg	Ile	Ala	Glu	Ala	Cys	Gly	Ile	Biniossek et al., 2016
Pyruvate kinase I	P0AD61	221-244	peptide-Glu232+Ile-peptide	N	MS	Asn	Phe	Asp	Glu	Ile	Leu	Glu	Ala	Biniossek et al., 2016
Pyruvate kinase II	P21599	227-250	peptide-Glu228+Ala-peptide	N	MS	Glu	Arg	Ala	Glu	Ala	Val	Cys	Ser	Biniossek et al., 2016
Quinone reductase	P0AGE6	30-92	peptide-Glu68+Gln-peptide	N	MS	Ala	Leu	Ala	Glu	Gln	Ile	Arg	Gln	Biniossek et al., 2016
Regulator of ribonuclease activity B	P0AF90	16-48	peptide-Glu20+Leu-peptide	N	MS	Ile	Ile	Glu	Glu	Leu	Leu	Glu	Asp	Biniossek et al., 2016
Regulator of sigma D	P0AFX4	92-143	peptide-Glu135+Ala-peptide	N	MS	Glu	Ala	Leu	Glu	Ala	Arg	Phe	Val	Biniossek et al., 2016
Ribonucleoside-diphosphate reductase 1 subunit alpha	P00452	65-91	peptide-Ala81+Ala-peptide	N	MS	Gln	Tyr	Leu	Ala	Ala	Arg	Leu	Ala	Biniossek et al., 2016
Ribonucleoside-diphosphate reductase 1 subunit beta	P69924	238-254	peptide-His242+Leu-peptide	N	MS	Glu	Ala	Leu	His	Leu	Thr	Gly	Thr	Biniossek et al., 2016
Ribose import binding protein RbsB	P02925	194-231	peptide-Met218+Ala-peptide	N	MS	Asn	Asp	Glu	Met	Ala	Leu	Gly	Ala	Biniossek et al., 2016
Ribose import binding protein RbsB	P02925	120-135	peptide-Glu121+Val-peptide	N	MS	Thr	Lys	Gly	Glu	Val	Val	Ser	His	Biniossek et al., 2016
RNA polymerase sigma factor RpoD	P00579	123-150	peptide-Glu139+Ala-peptide	N	MS	Glu	Tyr	Pro	Glu	Ala	Ile	Thr	Tyr	Biniossek et al., 2016
RNA polymerase sigma factor RpoD	P00579	221-236	peptide-Glu223+Leu-peptide	N	MS	Lys	Phe	Ala	Glu	Leu	Arg	Ala	Gln	Biniossek et al., 2016
RNA polymerase-binding transcription factor DksA	P0ABS1	106-124	peptide-Glu115+Ser-peptide	N	MS	Gly	Tyr	Cys	Glu	Ser	Cys	Gly	Val	Biniossek et al., 2016
S-adenosylmethionine synthase	P0A817	285-320	peptide-Tyr301+Ala-peptide	N	MS	Gln	Val	Ser	Tyr	Ala	Ile	Gly	Val	Biniossek et al., 2016
S-adenosylmethionine synthase	P0A817	198-209	peptide-Glu201+Ala-peptide	N	MS	Ser	Leu	Gln	Glu	Ala	Val	Met	Glu	Biniossek et al., 2016
Sensor protein TorS	P39453	154-182	peptide-Ala155+Gln-peptide	N	MS	Ala	Arg	Leu	Ala	Gln	Gly	Gln	Ala	Biniossek et al., 2016
Serine hydroxymethyltransferase	P0A825	26-42	peptide-Glu28+His-peptide	N	MS	Arg	Gln	Glu	Glu	His	Ile	Glu	Leu	Biniossek et al., 2016
Serine hydroxymethyltransferase	P0A825	24-54	peptide-Glu31+Leu-peptide	N	MS	Glu	His	Ile	Glu	Leu	Ile	Ala	Ser	Biniossek et al., 2016
Serine hydroxymethyltransferase	P0A825	63-83	peptide-Glu69+Tyr-peptide	N	MS	Gly	Gly	Cys	Glu	Tyr	Val	Asp	Ile	Biniossek et al., 2016
Serine hydroxymethyltransferase	P0A825	139-160	peptide-Asp148+Ala-peptide	N	MS	Tyr	Gly	Ile	Asp	Ala	Thr	Gly	His	Biniossek et al., 2016
Succinate dehydrogenase flavoprotein subunit	P0AC41	321-344	peptide-Glu324+Ser-peptide	N	MS	Glu	Val	Leu	Glu	Ser	Arg	Leu	Pro	Biniossek et al., 2016
Succinate--CoA ligase [ADP-forming] subunit beta	P0A836	373-388	peptide-Ala383+Ala-peptide	N	MS	Gln	Val	Val	Ala	Ala	Val	Glu	Gly	Biniossek et al., 2016
Superoxide dismutase [Mn]	P00448	31-60	peptide-Ala41+Ala-peptide	N	MS	Asn	Ala	Asn	Ala	Ala	Leu	Glu	Ser	Biniossek et al., 2016
tenascin	P24821	23-2201	peptide-Glu89+His-peptide	P	MS	Ser	Phe	Gln	Glu	His	Thr	Val	Asp	Zhen et al., 2008	22610
tenascin	P24821	23-2201	peptide-Cys64+Ser-peptide	P	MS	Gly	Ser	Gln	Cys	Ser	Val	Asp	Leu	Zhen et al., 2008
Thiol peroxidase	P0A862	94-110	peptide-Gly96+Ala-peptide	N	MS	Arg	Phe	Cys	Gly	Ala	Glu	Gly	Leu	Biniossek et al., 2016
Thiol peroxidase	P0A862	94-110	peptide-Glu98+Gly-peptide	N	MS	Cys	Gly	Ala	Glu	Gly	Leu	Asn	Asn	Biniossek et al., 2016
Thiol peroxidase	P0A862	111-128	peptide-Phe114+Leu-peptide	N	MS	Asn	Ala	Glu	Phe	Leu	Gln	Ala	Tyr	Biniossek et al., 2016
Thioredoxin reductase	P0A9P4	266-294	peptide-Phe283+Ala-peptide	N	MS	Pro	Gly	Val	Phe	Ala	Ala	Gly	Asp	Biniossek et al., 2016
Thioredoxin reductase	P0A9P4	97-118	peptide-Tyr104+Thr-peptide	N	MS	Asn	Gly	Glu	Tyr	Thr	Cys	Asp	Ala	Biniossek et al., 2016
Thiosulfate sulfurtransferase PspE	P23857	28-46	peptide-Gln31+Tyr-peptide	N	MS	Val	Pro	Glu	Gln	Tyr	Gln	Gln	Glu	Biniossek et al., 2016
Transaldolase B	P0A870	194-214	peptide-Pro197+Ala-peptide	N	MS	Glu	Tyr	Ala	Pro	Ala	Glu	Asp	Pro	Biniossek et al., 2016
Transaldolase B	P0A870	26-49	peptide-Asp31+Ala-peptide	N	MS	Gln	Pro	Gln	Asp	Ala	Thr	Thr	Asn	Biniossek et al., 2016
Transcription termination/antitermination protein NusA	P0AFF6	348-361	peptide-Glu351+Ala-peptide	N	MS	His	Gln	Ala	Glu	Ala	His	Ala	Ala	Biniossek et al., 2016
Transcription-repair-coupling factor	P30958	377-406	peptide-Glu396+Ala-peptide	N	MS	Gly	Arg	Arg	Glu	Ala	Leu	Gly	Glu	Biniossek et al., 2016
Translation initiation factor IF-2	P0A705	611-645	peptide-Leu631+Ser-peptide	N	MS	Ile	Leu	Gly	Leu	Ser	Gly	Val	Pro	Biniossek et al., 2016
Translation initiation factor IF-2	P0A705	611-645	peptide-Pro635+Ala-peptide	N	MS	Ser	Gly	Val	Pro	Ala	Ala	Gly	Asp	Biniossek et al., 2016
Translation initiation factor IF-2	P0A705	674-694	peptide-Asn680+Met-peptide	N	MS	Met	Phe	Ala	Asn	Met	Thr	Glu	Gly	Biniossek et al., 2016
Translation initiation factor IF-3	P0A707	126-149	peptide-Met135+Ala-peptide	N	MS	Gly	Arg	Glu	Met	Ala	His	Gln	Gln	Biniossek et al., 2016
Trehalose-6-phosphate hydrolase	P28904	152-179	peptide-His162+Leu-peptide	N	MS	Tyr	Tyr	Leu	His	Leu	Phe	Ala	Pro	Biniossek et al., 2016
Trehalose-6-phosphate hydrolase	P28904	263-281	peptide-Ala265+Leu-peptide	N	MS	Arg	Tyr	Ala	Ala	Leu	Thr	Gly	Ser	Biniossek et al., 2016
Trehalose-6-phosphate hydrolase	P28904	346-408	peptide-Glu390+Leu-peptide	N	MS	Met	Phe	Ala	Glu	Leu	Arg	Asn	Asp	Biniossek et al., 2016
Trigger factor	P0A850	297-315	peptide-Ala305+Leu-peptide	N	MS	Val	Pro	Ala	Ala	Leu	Ile	Asp	Ser	Biniossek et al., 2016
Trigger factor	P0A850	99-127	peptide-Glu116+Leu-peptide	N	MS	Pro	Glu	Val	Glu	Leu	Gln	Gly	Leu	Biniossek et al., 2016
tRNA-modifying protein YgfZ	P0ADE8	179-225	peptide-Gln217+Ala-peptide	N	MS	Thr	Asn	Leu	Gln	Ala	Leu	Gly	Gly	Biniossek et al., 2016
tRNA-modifying protein YgfZ	P0ADE8	246-268	peptide-Trp249+Leu-peptide	N	MS	Arg	Ala	Leu	Trp	Leu	Leu	Ala	Gly	Biniossek et al., 2016
Truncated inactive ribonuclease PH	P0CG19	1-22	peptide-Val11+Arg-peptide	N	MS	Asn	Asn	Gln	Val	Arg	Pro	Val	Thr	Biniossek et al., 2016
Tryptophanase	P0A853	335-366	peptide-Glu346+Glu-peptide	N	MS	Asp	Gly	Leu	Glu	Glu	Ile	Gly	Val	Biniossek et al., 2016
Tryptophanase	P0A853	104-115	peptide-Glu106+Gln-peptide	N	MS	Arg	Gly	Ala	Glu	Gln	Ile	Tyr	Ile	Biniossek et al., 2016
Tryptophanase	P0A853	242-246	peptide-Glu244+Tyr-peptide	N	MS	Arg	Glu	Ala	Glu	Tyr	Lys	Asp	Trp	Biniossek et al., 2016
Tryptophanase	P0A853	318-334	peptide-Gly321+Leu-peptide	N	MS	Leu	Ala	Val	Gly	Leu	Tyr	Asp	Gly	Biniossek et al., 2016
Tryptophanase	P0A853	34-88	peptide-Glu72+Ala-peptide	N	MS	Arg	Gly	Asp	Glu	Ala	Tyr	Ser	Gly	Biniossek et al., 2016
Tryptophanase	P0A853	169-211	peptide-Glu181+Glu-peptide	N	MS	Arg	Gly	Ile	Glu	Glu	Val	Gly	Pro	Biniossek et al., 2016
Tryptophanase	P0A853	89-115	peptide-Gln101+Gly-peptide	N	MS	Pro	Thr	His	Gln	Gly	Arg	Gly	Ala	Biniossek et al., 2016
Tryptophanase	P0A853	34-88	peptide-Tyr74+Ser-peptide	N	MS	Asp	Glu	Ala	Tyr	Ser	Gly	Ser	Arg	Biniossek et al., 2016
Tryptophanase	P0A853	388-406	peptide-Gly390+Ile-peptide	N	MS	Lys	Val	Ala	Gly	Ile	Arg	Ala	Val	Biniossek et al., 2016
Tryptophanase	P0A853	410-440	peptide-Glu416+Leu-peptide	N	MS	Cys	Pro	Ala	Glu	Leu	Leu	Arg	Leu	Biniossek et al., 2016
Tryptophanase	P0A853	128-156	peptide-Gly141+His-peptide	N	MS	Thr	Thr	Gln	Gly	His	Ser	Gln	Ile	Biniossek et al., 2016
Tryptophanase	P0A853	34-88	peptide-Met67+Met-peptide	N	MS	Gln	Ala	Ala	Met	Met	Arg	Gly	Asp	Biniossek et al., 2016
Tryptophanase	P0A853	89-115	peptide-Thr99+His-peptide	N	MS	Thr	Ile	Pro	Thr	His	Gln	Gly	Arg	Biniossek et al., 2016
Tryptophanase	P0A853	367-387	peptide-Gln379+Ala-peptide	N	MS	Phe	Pro	Ala	Gln	Ala	Leu	Ala	Cys	Biniossek et al., 2016
Type II NADH:quinone oxidoreductase	P00393	113-135	peptide-Met120+Ala-peptide	N	MS	Thr	Leu	Val	Met	Ala	Leu	Gly	Ser	Biniossek et al., 2016
Type-1 fimbrial protein, A chain	P04128	160-178	peptide-Phe161+Ala-peptide	N	MS	Ala	Arg	Tyr	Phe	Ala	Thr	Gly	Ala	Biniossek et al., 2016
Type-1 fimbrial protein, A chain	P04128	37-61	peptide-Cys44+Ala-peptide	N	MS	Asn	Ala	Ala	Cys	Ala	Val	Asp	Ala	Biniossek et al., 2016
Type-1 fimbrial protein, A chain	P04128	37-61	peptide-Ala45+Val-peptide	N	MS	Ala	Ala	Cys	Ala	Val	Asp	Ala	Gly	Biniossek et al., 2016
Tyrosine--tRNA ligase	P0AGJ9	296-321	peptide-Tyr301+Val-peptide	N	MS	Arg	Ala	Gln	Tyr	Val	Leu	Ala	Glu	Biniossek et al., 2016
UDP-N-acetylglucosamine 1-carboxyvinyltransferase	P0A749	23-46	peptide-Ala32+Leu-peptide	N	MS	Leu	Phe	Ala	Ala	Leu	Leu	Ala	Glu	Biniossek et al., 2016
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase	P22188	440-456	peptide-Glu442+Gly-peptide	N	MS	Lys	Val	Met	Glu	Gly	Arg	Ala	Glu	Biniossek et al., 2016
Uncharacterized Nudix hydrolase YfcD	P65556	61-86	peptide-Asp68+Ala-peptide	N	MS	Gly	Met	Leu	Asp	Ala	Thr	Ala	Gly	Biniossek et al., 2016
Universal stress protein A	P0AED0	62-100	peptide-Thr84+Leu-peptide	N	MS	Ile	Thr	Glu	Thr	Leu	Ser	Gly	Ser	Biniossek et al., 2016
Universal stress protein A	P0AED0	62-100	peptide-Ser86+Gly-peptide	N	MS	Glu	Thr	Leu	Ser	Gly	Ser	Gly	Asp	Biniossek et al., 2016
Universal stress protein E	P0AAC0	90-114	peptide-Glu103+Val-peptide	N	MS	Ile	Ile	Gln	Glu	Val	Ile	Ser	Gly	Biniossek et al., 2016
UPF0234 protein YajQ	P0A8E7	1-46	peptide-Glu27+Ser-peptide	N	MS	Arg	Glu	Val	Glu	Ser	Arg	Phe	Asp	Biniossek et al., 2016
UPF0265 protein YeeX	P0A8M6	54-69	peptide-Glu59+Ala-peptide	N	MS	Met	Ser	Val	Glu	Ala	Ile	Gln	Gly	Biniossek et al., 2016
UPF0381 protein YiiS	P32162	49-66	peptide-Ala52+Ala-peptide	N	MS	Glu	Leu	Ala	Ala	Ala	Thr	Ser	Ser	Biniossek et al., 2016
Uridine kinase	P0A8F4	22-51	peptide-Glu31+Leu-peptide	N	MS	Leu	Tyr	Arg	Glu	Leu	Arg	Glu	Gln	Biniossek et al., 2016
Uronate isomerase	P0A8G3	118-152	peptide-Ser141+Ala-peptide	N	MS	Asp	Asn	Phe	Ser	Ala	Arg	Gly	Ile	Biniossek et al., 2016
Valine--tRNA ligase	P07118	812-820	peptide-Glu813+Met-peptide	N	MS	Ile	Arg	Ala	Glu	Met	Asn	Ile	Ala	Biniossek et al., 2016
Versican core protein	Q62059-2	24-2397	peptide-Glu441+Ala-peptide	P	AB	Glu	Ala	Ala	Glu	Ala	Arg	Arg	Gly	McCulloch et al., 2009
Versican core protein, Isoform V1	P13611-2	21-2409	peptide-Tyr244+Val-peptide	P	MS	Val	Tyr	Cys	Tyr	Val	Asp	His	Leu	Martin et al., 2021
Versican core protein, Isoform V1	P13611-2	21-2409	peptide-Phe261+Thr-peptide	P	MS	Pro	Ser	Lys	Phe	Thr	Phe	Glu	Glu	Martin et al., 2021
Versican core protein, Isoform V1	P13611-2	21-2409	peptide-Glu441+Ala-peptide	P	MS	Glu	Ala	Ala	Glu	Ala	Arg	Arg	Gly	Martin et al., 2021
Versican core protein, Isoform V1	P13611-2	21-2409	peptide-Phe1778+Ser-peptide	P	MS	Gln	Pro	Glu	Phe	Ser	Ser	Gly	Ala	Martin et al., 2021
Versican core protein, Isoform V1	P13611-2	21-2409	peptide-Glu1784+Ala-peptide	P	MS	Gly	Ala	Glu	Glu	Ala	Leu	Val	Asp	Martin et al., 2021
Versican core protein, Isoform V1	P13611-2	21-2409	peptide-Ala1785+Leu-peptide	P	MS	Ala	Glu	Glu	Ala	Leu	Val	Asp	His	Martin et al., 2021
Versican core protein, Isoform V1	P13611-2	21-2409	peptide-Ala2030+Leu-peptide	P	MS	Thr	Gln	Ala	Ala	Leu	Ile	Arg	Gly	Martin et al., 2021
Versican core protein, Isoform V1	P13611-2	21-2409	peptide-Glu2091+Ser-peptide	P	MS	Ile	Asn	Glu	Glu	Ser	Val	Glu	Gly	Martin et al., 2021
Versican core protein, Isoform V1	P13611-2	21-2409	peptide-Leu2217+Thr-peptide	P	MS	Gly	Ala	His	Leu	Thr	Ser	Ile	Leu	Martin et al., 2021