Fourier Shell Correlation (FSC) server
Welcome to the PDBe Fourier Shell Correlation (FSC) server!
This web service will calculate and plot the FSC curve from two 3D reconstructions that you upload.
You will be able to download the FSC curve as an XML file that can then be uploaded
as a part of a deposition to EMDB. This server uses the EMAN2
package
for the FSC calculation. The implementation of the 3 sigma and half bit threshold
curves is based on Imagic code kindly provided by Michael Schatz (ImageScience
Software GmbH).
Supported input file formats
include CCP4/MRC, Imagic, Spider,
EMAN2 HDF5 and others. We have one test data sets that you can use to try out the service
here. We appreciate your continuing
support and
feedback!
The uploaded maps will be deleted after the calculation is completed.
Quick links
Recent Entries
(Show all)
Structure of BAF in complex with OCT4-SOX2-bound nucleosome - SHL+6 class 2 (Focused refinement of BAF part)
Focused refinement map on N-terminus of mouse TRPM3 alpha 2 in complex with antagonist Ononetin
Cryo-EM composite structure of mouse TRPM3 alpha 2 in complex with antagonist Ononetin
Structure of BAF in complex with OCT4-SOX2-bound nucleosome - SHL-6
Cryo-EM structure of mouse TRPM3 alpha 2 in with agonists CIM-0216 and Pregnenolone sulfate (PregS)
Structure of BAF in complex with OCT4-SOX2-bound nucleosome - SHL-6 (Focused refinement of nucleosome+OCT4/SOX2 part)
Structure of BAF in complex with OCT4-SOX2-bound nucleosome - SHL-6 (Focus refinement of BAF BASE+ARM+HEAD)
Cryo-EM structure of mouse TRPM3 alpha 2 in complex with antagonist Ononetin
Structure of BAF in complex with OCT4-SOX2-bound nucleosome - SHL-6 (Focus refinement of nucleosome part)
Structure of BAF-nucleosome complex with OCT4-SOX2 at SHL+6 in ADP-bound state, BAF47 bound to ATPase lobe 2 (Focused refinement of nucleosome and ATPase lobes)
Entamoeba histolytica Gal/GalNAc lectin in presence of monoclonal antibody CP33-H/L-LA22, mode I
Entamoeba histolytica Gal/GalNAc lectin in presence of monoclonal antibody CP33-H/L-LA22, mode 2
Entamoeba histolytica Gal/GalNAc lectin bound to monoclonal antibody CP33-H/L-LA22
Entamoeba histolytica Gal/GalNAc lectin bound to galactose, mode 1
CRYO-EM STRUCTURE OF THE YEAST RESPIRATORY COMPLEX II WITH THE INHIBITOR BIXAFEN
Activated 9-subunit COP9 signalosome and neddylated SCF (SKP1-SKP2-CKS1) complex structure
Entamoeba histolytica Gal/GalNAc lectin bound to galactose, mode 3
Entamoeba histolytica Gal/GalNAc lectin in presence of monoclonal antibody CP33-H/L-LA22, mode 3
PhiC31 integrative synapse: attB x attP with an S12A integrase variant
Entamoeba histolytica Gal/GalNAc lectin bound to galactose, mode 2
PhiC31 excisive synapse; attL x attL with an integraseS12A-RDF protein fusion
PhiC31 integrase-attB-attP synaptic complex: attB-bound dimer subregion
Structure of the MAP2K MEK1 in an inactive conformation in complex with its substrate MAPK ERK2
Structure of the MAP2K MEK1 in an active conformation in complex with its substrate MAPK ERK2
PhiC31 integrase-attB-attP synaptic complex: attP-bound dimer subregion
CryoEM structure of GFP-like protein from Aequorea coerulescens with Trimbody
The structure of mCAT1 in complex with its substrate ornithine and the RBD of FrMLV.
Target DNA-bound type I-F3 TniQ-Cascade of Vibrio parahaemolyticus in partial R-loop state
Target DNA-bound type I-F3 TniQ-Cascade of Vibrio parahaemolyticus in full R-loop state 1
Target DNA-bound type I-F3 TniQ-Cascade of Vibrio parahaemolyticus in full R-loop state 2
Cryo-EM structure of the multi-component acyltransferase complex MucABC from Streptococcus macacae at a stoichiometric ratio of 4:2:2
Cryo-EM structure of the multi-component acyltransferase complex MucABC from Streptococcus macacae at a stoichiometric ratio of 4:4:4
Cryo-EM structure of human papillomavirus type 45 in complexed with the Fab fragment of 20B8
The structure of outer peripheral region in the phage phiKZ baseplate complex
Structure of the inner peripheral region in the phage phiKZ baseplate complex
In situ structure of radial spoke 2 head in the axoneme of mouse sperm
In situ structure of radial spoke 1 head in the axoneme of mouse sperm
In situ structure of radial spoke 3 head in the axoneme of mouse sperm
In situ structure of radial spoke 3 base in the axoneme of mouse sperm
In situ structure of radial spoke 2 base in the axoneme of mouse sperm
In situ structure of radial spoke 1 base in the axoneme of mouse sperm
Cryo-EM structure of human papillomavirus type 45 in complexed with the Fab fragment of 10G2
Structure of mammalian RNA polymerase II stalled by Actinomycin D at the N-1 position.
CryoEM structure of anti-MHC-I Fab B1.23.2 complex with HLA-B44:05
Structure of full length AMPA receptor GluA2 and auxiliary subunit TARP gamma-2 in complex with anti-miR 17 oligonucleotide RGLS4326
Structure of AMPA receptor GluA2 and auxiliary subunit TARP gamma-2 (LBD-TMD) in complex with anti-miR 17 oligonucleotide RGLS4326
Composite map of in situ structure of the 96-nm repeat DMT in the axoneme of mouse sperm
Consensus map of in situ structure of the 96-nm repeat DMT in the axoneme of mouse sperm
Cryo-ET of FIB-milled synapse region between CD19+ NALM6 leukemia cells and T-cells expressing 8H47 CD19 CAR construct
Cryo-ET of FIB-milled synapse region between CD19+ NALM6 leukemia cells and T-cells expressing 8H15 CD19 CAR construct
Ligand-binding and transmembrane domains for GluK2-2xNeto2 in the apo state
Cryo-ET of FIB-milled synapse region between CD19+ NALM6 leukemia cells and T-cells expressing 8H15 CD19 CAR construct
Ligand-binding and transmembrane domains for GluK2-1xNeto2 in the apo state
Cryo-ET of FIB-milled synapse region between CD19+ NALM6 leukemia cells and T-cells expressing 8H47 CD19 CAR construct
Cryo-ET of FIB-milled synapse region between CD19+ NALM6 leukemia cells and T-cells expressing 8H8 CD19 CAR construct, (sample2, region3).
Cryo-ET of FIB-milled synapse region between CD19+ NALM6 leukemia cells and T-cells expressing 8H8 CD19 CAR construct, (sample2, region2).
Cryo-ET of FIB-milled synapse region between CD19+ NALM6 leukemia cells and T-cells expressing 8H8 CD19 CAR construct, (sample 1).
Cryo-EM structure of amyloid fibrils extracted from the heart of a variant ATTRv-A25S amyloidosis
Focused refinement of the prefusion F glycoprotein ectodomain of Nipah virus in complex with DS90 nanobody
Cryo-EM structure of amyloid fibril isolated from the kidney of a variant Alect2-I40V amyloidosis patient
Cryo-EM structure of amyloid fibril extracted from the heart of a variant ATTR D38A amyloidosis patient
Cryo-EM structure of amyloid fibril isolated from the kidney of a variant ALECT2-I40V amyloidosis patient
Cryo-EM structure of amyloid fibril isolated from the kidney of a variant ALECT2-I40V amyloidosis patient
Structure of Nanchung-Inactive-Calmodulin in complex with Nicotinamide
Structure of MurJ in complex with single gene lysis protein from phage M
Structure of Nanchung-Inactive-Calmodulin in complex with Afidopyropen, EDTA
Structure of Nanchung-Inactive-Calmodulin in complex with Afidopyropen and calcium
Structure of MurJ in complex with single gene lysis protein from phage PP7
Structure of MurJ in complex with single gene lysis protein from phage Changjiang3
Structure of Nanchung-Inactive-Calmodulin in complex with Nicotinamide, EDTA
KICSTOR-GATOR1 complex (SZT2 [1-1330], NPRL2, NPRL3, DEPDC5) focused refinement.
Cryo-EM structure of mouse TRPM3 alpha 2 in complex with antagonist Primidone
Structure of BAF in complex with OCT4-SOX2-bound nucleosome - SHL+6 class 1
Structure of BAF-nucleosome complex with OCT4-SOX2 at SHL+6 in ADP-bound state, BAF47 bound to ATPase lobe 2
Structure of BAF in complex with OCT4-SOX2-bound nucleosome - SHL-6 (ATPase part)
Structure of BAF-nucleosome complex with OCT4-SOX2 at SHL+6 in ADP-bound state, BAF47 bound to ATPase lobe 2 (Consensus map)
Structure of BAF in complex with OCT4-SOX2-bound nucleosome - SHL-6 (Focus refinement of ARP module)
Structure of BAF in complex with OCT4-SOX2-bound nucleosome - SHL-6 (Focus refinement of nucleosome+OCT4/SOX2 part)
Cryo-EM structure of mouse TRPM3 alpha 2 in complex with antagonist Isosakuranetin
Structure of BAF in complex with OCT4-SOX2-bound nucleosome - SHL+6 class 2
Structure of BAF in complex with OCT4-SOX2-bound nucleosome - SHL-6 (Consensus map)
Structure of BAF-nucleosome complex with OCT4-SOX2 at SHL+6 in ADP-bound state, BAF47 bound to ATPase lobe 2 (Focused refinement of BAF)
Structure of BAF in complex with OCT4-SOX2-bound nucleosome - SHL+6 class 2 (Consensus map)