Happy Holidays and New year from the EMDB! Please be advised that the EMDB team will be operating at reduced capacity between December 15th - January 12th. With this in mind we would ask that you be prepared for longer reply times through both our helpdesk system and the OneDep deposition system. well done on a productive 2025, wishing you all the best and we will see you in 2026!
EMDB Validation Analysis Officially Launched
October 12, 2022
EMDB Validation Analysis (VA) is officially launched at https://www.ebi.ac.uk/emdb/va/. It is available as a local stand-alone package and is coming soon to CCP-EM. The tutorial on how to use the VA information is on EMDB YouTube channel. A full description of VA functionality is published in Acta Crystallographica Section D.
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Recent Entries
(Show all)CryoEM structure of Western equine encephalitis virus California VLP in complex with VLDLR-LA3
GTPBP1*GDP*Phe-tRNA*ribosome in the post-GTP hydrolysis state, Structure IV
GTPBP1*GCP*Phe-tRNA*ribosome in the GTPase activation-like state, Structure III
Cryo-EM structure of a designed pyridoxal phosphate (PLP) synthase fused to a designed circumsporozoite protein antigen from Plasmodium falciparum (CSP-P1-CSP and CSP-P2-CSP)
Constituent EM map: Focused refinement on Ry34 of mouse RyR1 (including auxiliary transmembrane helix TMx; EGTA-only dataset)
Constituent EM map: Focused refinement on BSol of mouse RyR1 (Ca2+/CFF/ATP dataset; closed pore)
Constituent EM map: Focused refinement on JSol+CSol of mouse RyR1 with simvastatin (Ca2+/CFF/ATP dataset; open pore)
Constituent EM map: Focused refinement on Ry34 of mouse RyR1 (Ca2+/CFF/ATP dataset; closed pore)
Constituent EM map: Focused refinement on BSol of mouse RyR1 (including auxiliary transmembrane helix TMx; EGTA-only dataset)
Constituent EM map: Focused refinement on NTD+SPRY+Calstabin-1 of mouse RyR1 (Ca2+/CFF/ATP dataset; closed pore)
Constituent EM map: Focused refinement on Ry34 of mouse RyR1 (Ca2+/CFF/ATP dataset; open pore)
Constituent EM map: Focused refinement on NTD+SPRY+Calstabin-1 of mouse RyR1 (including auxiliary transmembrane helix TMx; EGTA-only dataset)
Constituent EM map: Focused refinement on Ry12 of mouse RyR1 with simvastatin (Ca2+/CFF/ATP dataset; open pore)
Constituent EM map: Focused refinement on Ry34 of mouse RyR1 with simvastatin (Ca2+/CFF/ATP dataset; open pore)
Constituent EM map: Focused refinement on Ry12 of mouse RyR1 (including auxiliary transmembrane helix TMx; EGTA-only dataset)
Constituent EM map: Focused refinement on Ry12 of mouse RyR1 (Ca2+/CFF/ATP dataset; open pore)
Constituent EM map: Focused refinement on JSol+CSol of mouse RyR1 (Ca2+/CFF/ATP dataset; closed pore)
Constituent EM map: Focused refinement on NTD+SPRY+Calstabin-1 of mouse RyR1 (Ca2+/CFF/ATP dataset; open pore)
Constituent EM map: Focused refinement on JSol+CSol of mouse RyR1 (Ca2+/CFF/ATP dataset; open pore)
Constituent EM map: Focused refinement on JSol+CSol of mouse RyR1 (including auxiliary transmembrane helix TMx; EGTA-only dataset)
Constituent EM map: Focused refinement on Ry12 of mouse RyR1 (Ca2+/CFF/ATP dataset; closed pore)
Constituent EM map: Focused refinement on BSol of mouse RyR1 (Ca2+/CFF/ATP dataset; open pore)
Constituent EM map: Focused refinement on NTD+SPRY+Calstabin-1 of mouse RyR1 with simvastatin (Ca2+/CFF/ATP dataset; open pore)
Constituent EM map: Focused refinement on BSol of mouse RyR1 with simvastatin (Ca2+/CFF/ATP dataset; open pore)
Constituent EM map: Focused refinement on Ry34 of mouse RyR1 with simvastatin (Ca2+/CFF/ATP dataset; closed pore)
Constituent EM map: Focused refinement on Ry12 of mouse RyR1 with simvastatin (Ca2+/CFF/ATP dataset; closed pore)
Constituent EM map: Focused refinement on BSol of mouse RyR1 with simvastatin (Ca2+/CFF/ATP dataset; closed pore)
Constituent EM map: Focused refinement on NTD+SPRY+Calstabin-1 of mouse RyR1 with simvastatin (Ca2+/CFF/ATP dataset; closed pore)
Constituent EM map: Focused refinement on JSol+CSol of mouse RyR1 with simvastatin (Ca2+/CFF/ATP dataset; closed pore)
Cryo-EM structure of violaxanthin-chlorophyll-a-binding protein with red shifted Chl a (rVCP) from Trachydiscus minutus at 2.4 angstrom
Cryo-EM structure of the Lhcp trimer from Ostreococcus tauri at 1.94 angstrom resolution
Cryo-EM structure of SARS-CoV-2 spike S2' trimer (dimer of trimer)
Type III-B CRISPR-Cas effector from Archaeoglobus fulgidus (Form 1)
FADD-DED filaments coordinate complex IIa assembly during TNF-induced apoptosis
Type III-B CRISPR-Cas effector from Archaeoglobus fulgidus (Form 2)
cryo-EM structure of RNF20/RNF40-RAD6A-Ub in complex with H2BS112GlcNAc nucleosome
Local refinement of interface of HSV UL5 and UL30 in the replication fork
HIV-1 R18L CA pentamer from capsid-like particles assembled in 1 M NaCl
Focused map of COP9 signalosome deneddylation state with cullin-4A
Cryo-EM structure of Croatia 2023 H3N2 Influenza A hemagglutinin (HA) trimer
CryoEM structure of filament of Bacillus subtilis TIR domain protein SpbK
CryoEM structure of the YonE portal protein from Bacillus phage SPbeta
The PSI3-IsiA43 complex with a closed double ring of IsiA proteins bound to a trimeric PSI core
Structure of beta1-AR-Gs complex bound to epinephrine and an allosteric modulator
The PSI1-IsiA13 complex with double-layered IsiA proteins bound to the monomeric PSI core
Cryo-EM structure of ASFV DNA polymerase in a DNA replication state
Croy-EM structure of HEV_4 p495 virus-like particle in complex with antibody 6H8
Cryo-EM structure of the cytosolic ARMH2-EFCAB9-CATSPERz subcomplex of the mouse CatSpermasome
Gi-bound kappa opioid receptor in complex with dynorphin and positive allosteric modulator MPAM-15
The apo structure (State 1) of African Swine Fever Virus DNA polymerase
Hexamer Msp1 from S.cerevisiae(with a catalytic dead mutation) in complex with an unknown peptide substrate
The local cryo-EM map of CATSPEREpsilon of Monomer A of the CatSper dimer
The local cryo-EM map of CATSPEREpsilon of Monomer B of the CatSper dimer
The local cryo-EM map of the gamma-gamma interface of the CatSper trimer
The local cryo-EM map of CATSPERBeta of Monomer A of the CatSper dimer
The local cryo-EM map of CATSPERGamma of Monomer B of the CatSper dimer
The local cryo-EM map of the extracellular region of the Monomers B and A' of the CatSper trimer
The local cryo-EM map of CATSPERGamma of Monomer A of the CatSper dimer
The local cryo-EM map of CATSPERBeta of Monomer B of the CatSper dimer
The local cryo-EM map of CATSPERDelta of Monomer A of the CatSper dimer
The local cryo-EM map of the eta-eta interface of the CatSper dimer
The local cryo-EM map of the extracellular region of Monomer A of the CatSper trimer
The local cryo-EM map of the transmembrane region of the CatSper dimer
The local cryo-EM map of CATSPERDelta of Monomer B of the CatSper dimer
Cryo-EM structure of E. coli glycine decarboxylase (P-protein) apo
Cryo-EM structure of RSV pre-F trimer in complex with CNR2056/CNR2047
Cryo-EM structure of RSV pre-F monomer in complex with CNR2056/CNR2047
Cryo-EM structure of RSV pre-F dimer in complex with CNR2056/CNR2047
