bioinformatics
New project to improve understanding of gene regulation landscape
Connecting AI to biology: Model Context Protocol
Machine learning method identifies evidence for developmental disorders in the G2P database
Sandra Orchard: what I’ve learned
New data initiative accelerates discovery and personalised care for mental health conditions
Case study: EMBL-EBI tool enables genomic outbreak surveillance for NHS Scotland
A new gateway to global antimicrobial resistance data
We are EMBL: Jana Broecker on building bridges between industry and academia
DECIPHER v11.35 released
SPRTA: a smarter way to measure evolution uncertainty
Changes to UniProt proteomes
New method to bring growth charts to children with rare genetic conditions through DECIPHER
ChEBI 2.0 launches
Rolf Apweiler: what I’ve learned
ChEMBL 36 is live
AI analysis for bioimages – what’s missing?
Global participation in biodata: Building equitable partnerships
EMBL-EBI and Google DeepMind renew partnership and release update to AlphaFold Database
How to rapidly search the world’s microbial DNA
Capturing 100 years of antibiotic resistance evolution
BioModels data resource moves to the University of Florida
AI model forecasts disease risk decades in advance
DECIPHER v11.34 released
Global effort to sequence all life on Earth ramps up
Ensembl 115 and Ensembl Genomes 62 released
Welcome: Jess Ewald
Welcome: Tim Coorens
New AlphaFold Database entry pages
From bench to code: collaboration unlocks insights into Alzheimer’s disease
New platform integrates gene perturbation data
CORNETO: machine learning to decode complex omics data
Welcome: Emily Clark
New Wellcome funding model supports the development of EMBL-EBI open data resources
Measuring the value and impact of UniProt
User survey to understand the value of open data resources
New platform calculating polygenic scores
Internal IT disruption resolved with no impact on public data resources
Machine learning algorithm brings long-read sequencing to the clinic
Reactome achieves CoreTrustSeal certification
OPSIN chemical name-to-structure tool moves to EMBL-EBI
Ensembl 114 and Ensembl Genomes 61 have been released
DECIPHER v11.31 released
SureChEMBL 2.0 is here
We are EMBL: Mary Barlow on managing change
Welcome: Noel O’Boyle
InterPro 105.0: AI for protein classification
GA4GH announces refget Sequence Collections
ENA launches Data Hubs Portal
We are EMBL: Shrayans Agrawal on network engineering and connectivity
DECIPHER v11.30 released
Thornton Building opens: a hub for collaboration and innovation
Changes in EMBL-EBI leadership
A federated future to support genomic medicine
Understanding rare diseases with digital twins
Quality and function at a glance: The role of TED in the AlphaFold Database
New look Gene2Phenotype website
Knowledge exchange between continents supports infection biology research
We are EMBL: Francesco Costa on protein design and the EMBL PhD programme
Cute molecules and the scientists who adore them: Deepti Gupta
Claire O’Donovan: what I’ve learned
Solve-RD: supporting rare disease data collection and harmonisation
We are EMBL: Timothé Cezard on pivoting from biology to infrastructure
BioChatter: making large language models accessible for biomedical research
Researchers uncover what drives aggressive bone cancer
DECIPHER v11.29 released
Fuelling discovery together: 2024 user survey learnings
Welcome: Christina Ernst
Human immune system is ‘ready to go’ long before birth
Welcome: Dan Trigg
DECIPHER v11.28 Released
BioChemGraph: Unifying structural and bioactivity data to accelerate drug discovery
InterPro 102.0 released
Ensembl 113 and Ensembl Genomes 60 have been released
Cancer drug resistance causes and categories identified
Computational protein design and protein structure prediction win Nobel Prize in Chemistry
New MGnify Proteins web resources launched
Funding awarded to develop a global Pathogen Data Network
Polygenic Score (PGS) Catalog increases diversity and usability of genetic data
Single Cell Expression Atlas 21 released
We are EMBL: Iguaracy Pinheiro-de-Sousa on organoids and nanorobot ‘highways’
EMBL-EBI’s open data resources for biodiversity and climate research
AlphaFold database empowers researchers with enhanced structural search via Foldseek integration
Alvis Brazma: what I’ve learned
Welcome: David Ocaña
Why clinical trials stop: the role of genetics
DECIPHER v11.27 release
We are EMBL: Melanie Schneider on changing career trajectory
We are EMBL: Kim Gurwitz on working with global partners to support bioinformatics training
Proteomics: a different lens for precision medicine
The EMBL evolution: Ewan Birney on open data and the ethos of excellence
Welcome: Mallory Freeberg
Ancient environmental DNA provides solutions for global food security challenges
IntAct reaches 1.5 million binary interaction evidences
Case study: Discovering new enzymes to upcycle food waste
The EMBL-EBI File Replication Archive hits 100 petabytes
DECIPHER v11.26 release
Predicting cancer risk on the basis of national health data
AlphaMissense data integrated into Ensembl, UniProt, DECIPHER and AlphaFold DB
Calling data resource users: we need your feedback
Expression Atlas 40 released
Welcome: Julio Saez-Rodriguez
Ensembl 112 has been released
We are EMBL: María Cerezo on balancing two roles and one of EMBL’s proudest achievements
Changes to EMBL-EBI’s Senior Management Team
MSD joins the Open Targets consortium
Researchers aim to use quantum computing to assemble and analyse pangenomes
Exploring cellular complexity with EMPIAR’s new cryo-electron tomography prototype browser
DECIPHER v11.25 released
‘Exhausted’ immune cells in healthy women could be target for breast cancer prevention
Using Data Hubs to analyse SARS-CoV-2 and other pathogen sequences
Sense makers: how standards are enabling data reuse
AI annotations increase patent data in SureCheMBL
The AI revolution hinges on accessible training
MGnify Genomes mouse gut catalogue v1.0 released
The malaria parasite generates genetic diversity using an evolutionary ‘copy-paste’ tactic
Team SAMBAI: addressing cancer disparities in recent African heritage populations
First datasets available in the Federated EGA Network
DECIPHER v11.24 Released
We are EMBL: Jacqueline Toussaint on strange bacteria and bioinformatics
Europe PMC supports preprint peer review
InterPro 98.0 released
Welcome: Kyle Morris
ProteomicsML: empowering proteomics research with machine learning
Ensembl 111 has been released
The Biodiversity Cell Atlas: charting cellular diversity on Earth
Unravelling the role of immune cells in early lung development
UKRI funding supports EMBL-EBI infrastructure upgrade in response to increasing data demand
The Global Biodiversity Portal: enabling biodiversity research worldwide
Extending the network of infectious disease data portals: developments in Sweden and The Netherlands
EMBL-EBI co-leads on research programme to help treat relapsed childhood cancers
Deciphering the data deluge: how large language models are transforming scientific data curation
Starting is easy, sustaining is hard
InterPro 97.0 released
BioImage Archive democratises access to microscopy data
Reducing the carbon footprint of scientific computing
A leap in user experience: AlphaFold Database introduces sequence-based search and structure cluster members
ggCaller: The next step in scaling up bacterial genome annotation
InterPro 96.0 released
We are EMBL: Valentina Lorenzi on human reproductive development
Understanding the mechanisms of enzyme catalysis
New predictions of genetic variant pathogenicity using AlphaFold protein structures
Uncovering the mechanisms underlying lack of response to immunotherapy
Revealing the secrets of protein evolution using the AlphaFold database
Nurturing computational excellence: the unique research culture at EMBL-EBI
EMBL alumni: Laura Clarke on the importance of data management
Open data to power up the blue economy
Novel algorithm able to detect mutations in single-cell sequencing data sets
EMBL alumni: Emily Perry on filling the skills gap to advance genomic medicine
Ensembl Bacteria releases new annotation for all its genomes
Latest release of the Expression Atlas
refget v2.0 links the hidden dictionaries of DNA
Ensembl 110 has been released
Latest release of IntAct and Complex Portal
EMBL-EBI’s new building set to support data growth and innovative partnerships
InterPro 95.0 released
DECIPHER database for rare diseases joins EMBL-EBI
Pathogens Portal: The new gateway to public pathogen data
David Hulcoop appointed as Open Targets Director
Europe PMC ROR integration improves grant affiliations
Bringing research on disordered proteins to order
FAIRification framework: making your data Findable, Accessible, Interoperable, and Reusable
Supporting the development of hologenomic approaches for more sustainable animal feeds
Major user experience update in AlphaFold Database
Genomic medicine: ushering in a new era in healthcare
Janet Thornton retires: a pioneer in structural bioinformatics
ProtVar: understanding missense variation in humans
Cancer cell ‘decathlon’ to help predict tumour aggressiveness and metastasis
We are EMBL: Carolin Sauer on supporting cancer research
New releases: InterPro 94.0 and InterProScan 5.62-94.0
Managing a bioinformatics core facility
What happens when chromosomes shatter
A more diverse human reference genome
Bioinformatics powers international effort to map gene function
The Human Genome Project at 20: interview with Ewan Birney
EMBL alumni: Alex Almeida on the unchartered gut microbiome and becoming a principal investigator
WormBase ParaSite 18 released
MAPLE: a phylogenetic tool for pandemic-scale genome data
Building a bioinformatics community at the nf-core hackathon
ENA to introduce mandatory spatiotemporal annotations
EMBL alumni: Lara Urban on how genomic science supports conservation efforts
MGnify just got bigger – new data, new AI opportunities
Large-scale study enables new insights into rare eye disorders
New releases: InterPro 93.0 and InterProScan 5.61-93.0
Open data for biodiversity: an EMBL-EBI 2022 round-up
Latest Release of the Single Cell Expression Atlas
Shedding light on rare diseases: open data and model organisms
Europe PMC contributes to the Open Global Data Citation Corpus
A human interactome to prioritise drug discovery
New Job Dispatcher website launched
Molecules to Ecosystems: Jo McEntyre on data services
Congratulations to the new Sanger Institute Director
Case study: AlphaFold uses open data and AI to discover the 3D protein universe
Ensembl 109 has been released
BlueRemediomics: harnessing marine microbes to promote a circular bioeconomy
Leveraging long-read sequencing for cancer genomics
PDCM Finder – an open global cancer research platform for patient-derived cancer models
Machine learning to identify and prioritise drug targets
Darwin Tree of Life: first 500 genome assemblies released as project creates a buzz
New releases: InterPro 92.0 and InterProScan 5.60-92.0
BOSS-RUNS: streamlining dynamic nanopore sequencing
EMBL-EBI databases considered critical to life sciences
Spatial lung cell atlas offers insights into disease
First linked dataset on Pathogens Portal
EMBL-EBI appoints new Head of Technical Services
Developmental cell atlas uncovers new cell states
Genomic Data Infrastructure – integrating genomics into healthcare
Unleashing the biotechnology potential of euglenoids
Open Targets consortium welcomes Genentech as newest member
Open science for climate justice
New molecular microscopy uncovers how breast cancer spreads
AlphaFold applications – a community assessment
AI4LIFE: AI models for bioimaging
EMBL-EBI appoints Deputy Head of Research
Mapping the human brain: a global collaboration
Compare experimental and predicted structures with PDBe-KB
Ensembl 108 has been released
New releases: InterPro 91.0 and InterProScan 5.59-91.0
ArrayExpress interface now retired
Natural language processing for rapid protein annotation
Funding for researchers working on plastic recycling enzymes
Biodiversity Genomics Europe: addressing biodiversity loss through genomics
Ardan Patwardhan receives Scientific Achievement Award
AlphaFold: where will the next AI breakthrough come from?
CNest: a new method for copy number variation analysis
New antibiotic resistance genes identified in tuberculosis
New releases: InterPro 90.0 and InterProScan 5.57-90.0
Shining a light on how bacteria interact
AlphaFold predicts structure of almost every catalogued protein known to science
Uncharted territories in the human genome
Darwin Tree of Life at the Royal Society Summer Science Exhibition
UKRI allocates funding for EMBL-EBI data resources
ArrayExpress interface to close
Supporting the African BioGenome Project to build bioinformatics capacity
Impact of DNA mutations on blood cell production uncovered
A machine learning approach for allocating gene function
Organisations should embrace open science faster – interview with Prof. Dame Janet Thornton
Europe PMC: Harnessing the power of text mining to accelerate life sciences research
2.4 billion sequences now available in the latest MGnify protein database release
Predicted complexes from ModelArchive now on PDBe-KB pages
Interpreting bioimages with deep learning
Guy Cochrane appointed Executive Director of Global Biodata Coalition
The MANE collaboration: working together to support genome science
Latest Release of the Single Cell Expression Atlas
Genomic sequencing aids the global Tuberculosis fight
Darwin Tree of Life at EMBL-EBI: reaching the first major milestone
Safeguarding African biodiversity through genomics
Deep learning models help predict protein function
New Expression Atlas release in collaboration with PRIDE
New genetic data policy must promote biodiversity conservation
Pfizer joins the Open Targets consortium
Case study: COVID-19 Data Platform supports pandemic research efforts
Repurposing bioinformatics tools to tackle the pandemic
New clues to a 500-year old mystery about the human heart
Bagpipe and Pokemon, or how not to name a human gene
Why share data during a pandemic?
EMBL-EBI launches COVID-19 Data Portal
Ensembl 99 has been released!
B cells linked to immunotherapy for melanoma
Pinpointing the molecular mechanisms of ageing
Ensembl 92 has been released!
