Ligand clusters for UniProt code P61769

Ligand clusters for P61769: Beta-2-microglobulin from Homo sapiens

		Top 6 (of 9) ligand clusters Cluster 1. 43 ligand types 916 ligands Cluster 2. 3 ligand types 3 ligands Cluster 3. 6 ligand types 16 ligands Cluster 4. 2 ligand types 4 ligands Cluster 5. 2 ligand types 3 ligands Cluster 6. 1 ligand type 1 ligand
Representative protein: 3ov6A

Structures

PDB		Schematic diagram
3ov6A
4onoA
3s6cA
5eu3B
4k71C
		more ...

Cluster 1 contains 43 ligand types (of which only 20 are listed. Click for all)

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Ligand		Description
		1. Ligand: GOL × 377 glycerin Glycerol PDB codes: 1k5n(B), 1of2(B), 1ogt(B), 1qlf(B), 1tvb(B), 1tvh(B), 1uxs(B), 1uxw(B), 1w0w(B), 1x7q(B), 1xr8(B), 1xr9(B), 2a83(B), 2av1(B), 2av7(B), 2bck(B), 2cik(B), 2f53(B), 2git(B), 2gj6(B), 2gt9(B), 2gtw(B), 2gtz(B), 2guo(B), 2h26(B), 2p5e(B), 2p5w(B), 2pye(B), 2x4n(B), 2x4p(B), 2x4q(B), 2x4r(B), 2x4s(B), 2x4t(B), 2x4u(B), 2x70(B), 3b3i(B), 3bo8(B), 3bp4(B), 3bp7(B), 3bxn(B), 3czf(B), 3d18(B), 3d3v(B), 3dx6(B), 3dx7(B), 3dx8(B), 3fqn(B), 3fqr(B), 3fqt(B), 3fqu(B), 3fqx(B), 3h7b(B), 3h9h(B), 3h9s(B), 3hpj(B), 3ixa(B), 3l3g(B), 3l3i(B), 3l3k(B), 3lv3(B), 3myj(B), 3o3a(B), 3o3b(B), 3o3d(B), 3o3e(B), 3o4l(B), 3pwj(B), 3pwl(B), 3pwn(B), 3pwp(B), 3qfd(B), 3qfj(B), 3s6c(A), 3t8x(B), 3tzv(D), 3u0p(B), 3vcl(B), 4ftv(B), 4g9d(B), 4jfo(B), 4jfp(B), 4jfq(B), 4jqx(C), 4kdt(D), 4l4v(B), 4nnx(B), 4nny(B), 4pj9(B), 4pja(B), 4pjb(B), 4pje(B), 4pjf(B), 4pji(B), 4pjx(B), 4u1h(B), 4u1m(B), 4wj5(B), 4z77(B), 5c08(B), 5c0a(B), 5c0b(B), 5c0c(B), 5c0e(B), 5c0i(B), 5c0j(B), 5c9j(B), 5cka(A), 5d5m(B), 5d7i(B), 5d7j(D), 5d9s(B), 5ddh(B), 5def(B), 5deg(B), 5enw(B), 5eu3(B), 5eu5(B), 5f7d(B), 5f9j(B), 5fa3(B), 5fa4(B), 5grd(B), 5grg(B), 5gsd(B), 5ib2(B), 5ib3(B), 5ib4(B), 5isz(B), 5meo(B), 5n1y(B), 5nmg(B), 5nmh(B), 5t6w(B), 5t6x(B), 5t6y(B), 5trz(B), 5ts1(B), 5u16(B), 5vz5(B), 5xot(B), 6bj8(B), 6c97(B), 6c98(B), 6c99(B), 6id4(B), 6joz(B), 6jp3(B), 6m1b(A), 6o4y(B), 6o4z(B), 6o51(B), 6o53(B), 6opd(B), 6p64(B), 6puf(B), 6pui(F), 6puk(F), 6pul(F), 6q3k(B), 6ss7(B), 6ss8(B), 6ssa(B), 6tdo(B), 6tdp(B), 6uln(B), 6uzm(B), 6uzn(B), 6uzo(B), 6uzp(B), 6uzq(B), 6uzs(B), 6vb0(B), 6vb1(B), 6vb2(B), 6vb5(B), 6vb6(B), 6vb7(B), 6vm7(B), 6vq2(B), 6vqd(B), 6vqe(B), 6xqp(B), 6y26(B), 6y27(B), 6y28(B), 6y29(B), 6y2a(B), 6y2b(B), 7lg2(B), 7lg3(B), 7mkb(B),
		2. Ligand: ACY × 6 acetic acid Acetic acid PDB codes: 2axf(B), 2axg(B), 3kww(B),
_Mg		3. Metal: _MG × 5 PDB codes: 2p5e(B), 3fqr(B), 3fqx(B), 4jry(B), 4u6x(B).
		4. Ligand: CYS × 3 cysteine PDB codes: 6c98(B), 6qio(C), 6qip(C).
		5. Ligand: TRS × 3 tromethamine 2-Amino-2-Hydroxymethyl-Propane-1,3-Diol PDB codes: 3d18(B), 4g8i(B), 7afv(A).
		6. Ligand: IPA × 2 isopropyl alcohol Isopropyl alcohol PDB codes: 4uq3(B),
		7. Ligand: NAG × 2 n-acetylglucosamine 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose PDB codes: 3dbx(B), 3ov6(A).
		8. Ligand: URE × 2 urea Urea PDB codes: 1xr8(B), 1xr9(B).
__K		9. Metal: __K × 1 PDB code: 5wjn(B).
		10. Ligand: EDO × 205 1,2-Ethanediol PDB codes: 3bgm(B), 3bh8(B), 3bh9(B), 3bhb(B), 3rew(B), 4gks(B), 4i4w(B), 4jfp(B), 4no0(B), 4no2(B), 4no3(B), 4no5(B), 4qok(B), 4u1h(B), 4u1i(B), 4u1j(B), 4u1l(B), 4u1m(B), 4u1n(B), 4u1s(B), 4z76(B), 4z77(B), 5c07(B), 5c08(B), 5c0b(B), 5c0c(B), 5c0e(B), 5c0f(B), 5c0g(B), 5c0h(B), 5c0i(B), 5c0j(B), 5eu4(B), 5eu5(B), 5eu6(B), 5ieh(B), 5men(B), 5meo(B), 5mep(B), 5mer(B), 5n1y(B), 5n6b(B), 5nmf(B), 5nmg(B), 5nmh(B), 5nmk(B), 5nq1(B), 5trz(B), 5w67(B), 5wke(B), 5wkg(B), 5wki(B), 5wl1(B), 6d64(B), 6ei2(B), 6nux(B), 6o9b(B), 6rsy(B), 6ss7(B), 6ssa(B), 6tdq(B), 6tmo(B), 6uzp(B), 6uzs(B), 6vb1(B), 6vb4(B), 6vb7(B), 6viu(B), 6wzy(B), 7koz(B), 7kp0(B), 7nui(B).
		11. Ligand: SO4 × 106 Sulfate ion PDB codes: 1ce6(B), 1qlf(B), 1s9w(B), 1s9x(B), 1s9y(B), 1x7q(B), 1xr9(B), 2bck(B), 2gj6(B), 2h26(B), 2hn7(B), 2p5e(B), 2p5w(B), 3gsn(L), 3hg1(B), 3o4l(B), 3u0p(F), 4g9f(B), 4gks(B), 4i4w(B), 4jfd(B), 4jff(B), 4jfp(B), 4k71(C), 4kdt(D), 4prp(B), 4u1i(B), 4wc8(A), 4wdi(B), 4x0s(A), 4z76(B), 4z77(B), 4z78(B), 5brz(B), 5bs0(B), 5c07(B), 5c0b(B), 5c0f(B), 5c0j(B), 5eu4(B), 5eu5(B), 5eu6(B), 5men(B), 5meo(B), 5mep(B), 5meq(B), 5mer(B), 5n6b(B), 5nme(B), 5nq3(B), 5vz5(B), 6c15(B), 6eqa(B), 6eqb(B), 6ggm(B), 6gh1(B), 6gh4(B), 6gl1(B), 6o4z(B), 6o9c(B), 6r2l(B), 6ss7(B), 6ss8(B), 6tmo(B), 6uj9(B), 6uln(B), 6v7y(B), 6v7z(B), 6x00(B).
		12. Ligand: ACT × 48 Acetate ion PDB codes: 3dx6(B), 3dx7(B), 3l3d(B), 3l3g(B), 3l3j(B), 3myz(A), 3spv(B), 3tid(B), 4fxl(A), 4jqx(C), 4prn(B), 4qrs(B), 4qru(B), 4rmr(A), 4rms(A), 4rmt(A), 4rmv(A), 4rmw(A), 5cka(A), 5ckg(A), 5csg(A), 5u17(F), 6mt6(C), 6opd(B), 6puk(F), 6uzm(B), 6uzp(B), 6uzs(B), 6v2o(B), 6v2p(B), 6v2q(B), 6vb2(B), 6vb3(B), 6vb4(B), 6vb5(B), 6vb7(B), 6viu(B), 7k80(B), 7kgp(B).
		13. Ligand: PEG × 36 Di(hydroxyethyl)ether PDB codes: 3kpp(B), 3kww(B), 3tm6(A), 4fxl(A), 4rmq(A), 4rmr(A), 4rms(A), 4rmt(A), 4u6x(B), 5cka(A), 5n6b(B), 5wmp(B), 5wsh(B), 6c98(B), 6id4(B), 6o9b(B), 6o9c(B), 6ss8(B), 6ss9(B), 6ssa(B), 6uj8(B), 6uj9(B), 6v2p(B), 6wzy(B).
		14. Ligand: MES × 17 2-(N-Morpholino)-Ethanesulfonic acid PDB codes: 2x4o(B), 2x4p(B), 2x4q(B), 2x4s(B), 2x4t(B), 2x4u(B), 2x70(B), 3d18(B), 3o4l(B), 5c0f(B), 5mer(B), 6o9b(B), 6o9c(B), 6uz1(B), 7kp1(B).
_Na		15. Metal: _NA × 15 PDB codes: 1lds(A), 2a83(B), 2d4d(A), 2d4f(A), 2git(B), 2gt9(B), 2gtw(B), 2gtz(B), 3ffc(B), 3qfd(B), 4fxl(A), 4lcy(B), 4pj9(B), 4pjh(B), 6pte(B).
_Cd		16. Metal: _CD × 14 PDB codes: 1m05(B), 3ffc(B), 3fqn(B), 3fqr(B), 3fqt(B), 3fqu(B), 3fqx(B), 3tlr(A), 4nnx(B), 4nny(B).
		17. Ligand: PG4 × 9 Tetraethylene glycol PDB codes: 5c0e(B), 6o9b(B),
		18. Ligand: TFX × 8 2-[4-(Dimethylamino)phenyl]-3,6-Dimethyl-1,3- Benzothiazol-3-Ium PDB codes: 3myz(A), 3mzt(A), 4ra3(A),
		19. Ligand: PGE × 7 Triethylene glycol PDB codes: 2pye(B), 3qda(A), 4rmt(A), 4rmu(A), 4rmv(A), 4rmw(A), 6uj8(B).
		20. Ligand: PO4 × 6 Phosphate ion PDB codes: 3tm6(A), 5c9j(B), 6bj8(B), 6m1b(A), 6wzy(B).
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Cluster 2 contains 3 ligand types

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Ligand		Description
		1. Ligand: D12 × 1 Dodecane PDB code: 3ov6(A).
		2. Ligand: MK0 × 1 1-O-[(S)-Hydroxy{[(4s,8s,16s,20s)-4,8,12,16,20- Pentamethylheptacosyl]oxy}phosphoryl]-Beta-D- Mannopyranose PDB code: 3ov6(A).
		3. Ligand: PMK × 1 (4r,8s,16s,20r)-4,8,12,16,20-Pentamethylheptacosyl dihydrogen phosphate PDB code: 4ono(A).

Cluster 3 contains 6 ligand types

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Ligand		Description
		1. Ligand: GOL × 6 glycerin Glycerol PDB codes: 2av1(B), 2gj6(B), 2rfx(B), 4jfp(B), 6ss7(B), 6ss8(B).
		2. Ligand: EDO × 5 1,2-Ethanediol PDB codes: 4u1i(B), 5c0e(B), 5eu5(B), 5eu6(B), 5wl1(B).
Iod		3. Metal: IOD × 2 PDB codes: 3kxf(B), 5wmp(B).
		4. Ligand: ACT × 1 Acetate ion PDB code: 3myz(A).
		5. Ligand: SO4 × 1 Sulfate ion PDB code: 2pye(B).
		6. Ligand: TFX × 1 2-[4-(Dimethylamino)phenyl]-3,6-Dimethyl-1,3- Benzothiazol-3-Ium PDB code: 3myz(A).

Cluster 4 contains 2 ligand types

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Ligand		Description
		1. Ligand: GOL × 2 glycerin Glycerol PDB codes: 2gj6(B), 3qfj(B).
		2. Ligand: SO4 × 2 Sulfate ion PDB codes: 3pwp(B), 4z76(B).

Cluster 5 contains 2 ligand types

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Ligand		Description
		1. Ligand: GOL × 2 glycerin Glycerol PDB codes: 2av7(B), 4u1s(B).
_Mg		2. Metal: _MG × 1 PDB code: 2p5w(B).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: MLI × 1 Malonate ion PDB code: 4ono(A).