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PDBsum entry 6vq2

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protein ligands Protein-protein interface(s) links
Immune system PDB id
6vq2

 

 

 

 

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Contents
Protein chains
276 a.a.
100 a.a.
Ligands
LYS-ARG-TRP-ILE-
ILE-LEU
ILE-VAL-ARG-MET
GOL ×2
Waters ×260
PDB id:
6vq2
Name: Immune system
Title: Hla-b 27:05 Presenting an HIV-1 14mer peptide
Structure: Mhc class i antigen. Chain: a. Engineered: yes. Beta-2-microglobulin. Chain: b. Engineered: yes. 14-mer peptide. Chain: c. Engineered: yes
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: hla-b. Expressed in: escherichia coli. Expression_system_taxid: 562. Gene: b2m, cdabp0092, hdcma22p. Synthetic: yes. Human immunodeficiency virus 1.
Resolution:
2.25Å     R-factor:   0.178     R-free:   0.230
Authors: P.Pymm,S.Tenzer,E.Wee,M.Weimershaus,A.Burgevin,S.Kollnberger, J.Gerstoft,T.M.Josephs,K.Ladell,J.E.Mclaren,V.Appay,D.A.Price, L.Fugger,J.I.Bell,S.Hansjorg,P.Van Endert,M.Harkiolaki,A.K.N.Iversen
Key ref: P.Pymm et al. Hla-B27:05 Presenting an HIV-1 14mer peptide. To be published, .
Date:
04-Feb-20     Release date:   10-Feb-21    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chain
Pfam   ArchSchema ?
O78189  (O78189_HUMAN) -  MHC class I antigen from Homo sapiens
Seq:
Struc:
362 a.a.
276 a.a.
Protein chain
Pfam   ArchSchema ?
P61769  (B2MG_HUMAN) -  Beta-2-microglobulin from Homo sapiens
Seq:
Struc:
119 a.a.
100 a.a.*
Key:    PfamA domain  Secondary structure
* PDB and UniProt seqs differ at 1 residue position (black cross)

 

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