EMDB Solr Search Field Documentation

ctf_correction_type

CTF Correction Type

Type of correction applied to the contrast transfer function

current_status

Current status code

Current processing status of the entry (e.g., “REL” for released, “OBS” for obsoleted).

current_status_annotator

Current status annotator

Name or identifier of the annotator responsible for assigning the current status.

current_status_date

Current status date

Date when the current status was assigned to the entry.

current_status_site

Current status processing site

EMDB processing site responsible for the current entry status.

data_type

Data Type

Type of map data (e.g., density map, half-map, or mask), aggregated from any deposited map (primary, half-map, addition…

database

Database

EMDB or EMPIAR archive

dataset_size

Dataset size (KB)

Total size of all associated files in kilobytes, including maps, segmentations, slices, and additional data.

dataset_size_GB

Dataset size (GB)

Dataset size converted to gigabytes for consistency.

dataset_size_units

Dataset size units

Units of measurement for dataset size (e.g., GB, TB).

dep_author_name

Depositor author name

Name(s) of the author(s) listed in the deposition metadata.

deposition_date

Deposition date

Date when the entry was first deposited into EMDB.

deposition_site

Deposition site

Site where the entry was originally deposited.

detector_distance_details

Detector Distance

Distance between specimen and detector (millimeters).

detector_mode

Detector Mode

Mode in which the detector was used (e.g., counting, integrating, linear).

detector_model

Detector Model

Model or type of imaging detector or camera used.

dimension_col

Dimension (Columns)

Number of voxels or pixels along the X/column axis, aggregated from any deposited map (primary, half-map, additional, o…

dimension_row

Dimension (Rows)

Number of voxels or pixels along the Y/row axis, aggregated from any deposited map (primary, half-map, additional, or m…

dimension_sec

Dimension (Sections)

Number of voxels or slices along the Z/section axis, aggregated from any deposited map (primary, half-map, additional, …

drugbank_name

DrugBank drug name

Name of the drug or ligand from the DrugBank database.

drugbank_name_sgt

DrugBank drug name (suggest)

Name of the drug or ligand from the DrugBank database.

EC_number

Enzyme Commission number

Enzyme Commission (EC) number classifying the catalytic activity of an enzyme.

EC_number_sgt

Enzyme Commission number (suggest)

Enzyme Commission (EC) number classifying the catalytic activity of an enzyme.

editor

Editor

Name(s) of editor(s) associated with the primary citation.

electron_dose_per_image_value

Electron Dose per Image

Electron dose applied per image (electrons per square angstrom).

electron_source

Electron Source

Type of electron source used in the microscope (e.g., field emission gun, thermionic source).

electron_source_ft

Electron Source (facet)

Type of electron source used in the microscope (e.g., field emission gun, thermionic source).

EM_method

Electron microscopy method

Type of electron microscopy method used.

EM_method_sgt

Electron microscopy method (suggest)

Type of electron microscopy method used.

email

Contact author email

Email address of the contact author.

emdb_entry_label

Entry label

Set of labels extracted from the metadata.

emdb_id

EMDB ID

Unique identifier assigned to the entry in the EMDB archive.

emdb_id_sgt

EMDB ID (suggest)

Unique identifier assigned to the entry in the EMDB archive.

empiar_id

EMPIAR accession code

Identifier of the EMPIAR dataset; same as the entry accession code.

empiar_id_sgt

EMPIAR accession code (suggest)

Identifier of the EMPIAR dataset; same as the entry accession code.

energy_filter_name

Energy Filter Name

Name or model of the energy filter used in the microscope.

energy_filter_name_sgt

Energy Filter Name (suggest)

Name or model of the energy filter used in the microscope.

entry_doi

DOI (Digital Object Identifier)

DOI assigned to the EMPIAR entry.

entry_doi_sgt

DOI (Digital Object Identifier) (suggest)

DOI assigned to the EMPIAR entry.

estimated_contour_level_value

Estimated contour level

Estimated value of the contour level used to visualize the map.

estimated_surface_value

Estimated surface

Estimated surface area of the map.

estimated_volume_from_map_value

Estimated volume from map

Volume estimated directly from map density.

estimated_volume_value

Estimated volume

Estimated molecular volume.

estimated_weight_value

Estimated molecular weight

Estimated molecular weight from the map.

exp_type

Experiment category

Normalized experiment type grouping (Cryo-EM/ET, Volume EM, X-ray imaging, Other).

experimentType

Experiment type

Reported experimental method, e.g., EMDB, FIB-SEM, SXT.

experimentType_ft

Experiment type (facet)

Reported experimental method, e.g., EMDB, FIB-SEM, SXT.

family_name

Taxonomy Family

Name of the family classification of the organism (e.g., Hominidae, Enterobacteriaceae).

fast_axis

Fast Axis

Orientation or direction of the fast acquisition axis, aggregated from any deposited map (primary, half-map, additional…

figure_filename

Figure filename

Names or paths of figures associated with the entry, usually used for visual representation in the EMDB entry page.

Previous Page 5 of 20 Next