EMDB Solr Search Field Documentation

ctf_correction_type

CTF Correction Type

Type of correction applied to the contrast transfer function

current_status

Current status code

Current processing status of the entry (e.g., “REL” for released, “OBS” for obsoleted).

current_status_annotator

Current status annotator

Name or identifier of the annotator responsible for assigning the current status.

current_status_date

Current status date

Date when the current status was assigned to the entry.

current_status_site

Current status processing site

EMDB processing site responsible for the current entry status.

data_type

Data Type

Type of map data (e.g., density map, half-map, or mask), aggregated from any deposited map (primary, half-map, addition…

database

Database

EMDB or EMPIAR archive

dataset_size

Dataset size (KB)

Total size of all associated files in kilobytes, including maps, segmentations, slices, and additional data.

dataset_size_GB

Dataset size (GB)

Dataset size converted to gigabytes for consistency.

dataset_size_units

Dataset size units

Units of measurement for dataset size (e.g., GB, TB).

dep_author_name

Depositor author name

Name(s) of the author(s) listed in the deposition metadata.

deposition_date

Deposition date

Date when the entry was first deposited into EMDB.

deposition_site

Deposition site

Site where the entry was originally deposited.

detector_distance_details

Detector Distance

Distance between specimen and detector (millimeters).

detector_mode

Detector Mode

Mode in which the detector was used (e.g., counting, integrating, linear).

detector_model

Detector Model

Model or type of imaging detector or camera used.

dimension_col

Dimension (Columns)

Number of voxels or pixels along the X/column axis, aggregated from any deposited map (primary, half-map, additional, o…

dimension_row

Dimension (Rows)

Number of voxels or pixels along the Y/row axis, aggregated from any deposited map (primary, half-map, additional, or m…

dimension_sec

Dimension (Sections)

Number of voxels or slices along the Z/section axis, aggregated from any deposited map (primary, half-map, additional, …

drugbank_name

DrugBank drug name

Name of the drug or ligand from the DrugBank database.

drugbank_name_sgt

DrugBank drug name (suggest)

Name of the drug or ligand from the DrugBank database.

EC_number

Enzyme Commission number

Enzyme Commission (EC) number classifying the catalytic activity of an enzyme.

EC_number_sgt

Enzyme Commission number (suggest)

Enzyme Commission (EC) number classifying the catalytic activity of an enzyme.

editor

Editor

Name(s) of editor(s) associated with the primary citation.

electron_dose_per_image_value

Electron Dose per Image

Electron dose applied per image (electrons per square angstrom).

electron_source

Electron Source

Type of electron source used in the microscope (e.g., field emission gun, thermionic source).

electron_source_ft

Electron Source (facet)

Type of electron source used in the microscope (e.g., field emission gun, thermionic source).

EM_method

Electron microscopy method

Type of electron microscopy method used.

EM_method_sgt

Electron microscopy method (suggest)

Type of electron microscopy method used.

email

Contact author email

Email address of the contact author.

emdb_id

EMDB ID

Unique identifier assigned to the entry in the EMDB archive.

emdb_id_sgt

EMDB ID (suggest)

Unique identifier assigned to the entry in the EMDB archive.

empiar_id

EMPIAR accession code

Identifier of the EMPIAR dataset; same as the entry accession code.

empiar_id_sgt

EMPIAR accession code (suggest)

Identifier of the EMPIAR dataset; same as the entry accession code.

energy_filter_name

Energy Filter Name

Name or model of the energy filter used in the microscope.

energy_filter_name_sgt

Energy Filter Name (suggest)

Name or model of the energy filter used in the microscope.

entry_doi

DOI (Digital Object Identifier)

DOI assigned to the EMPIAR entry.

entry_doi_sgt

DOI (Digital Object Identifier) (suggest)

DOI assigned to the EMPIAR entry.

estimated_contour_level_value

Estimated contour level

Estimated value of the contour level used to visualize the map.

estimated_surface_value

Estimated surface

Estimated surface area of the map.

estimated_volume_from_map_value

Estimated volume from map

Volume estimated directly from map density.

estimated_volume_value

Estimated volume

Estimated molecular volume.

estimated_weight_value

Estimated molecular weight

Estimated molecular weight from the map.

exp_type

Experiment category

Normalized experiment type grouping (Cryo-EM/ET, Volume EM, X-ray imaging, Other).

experimentType

Experiment type

Reported experimental method, e.g., EMDB, FIB-SEM, SXT.

experimentType_ft

Experiment type (facet)

Reported experimental method, e.g., EMDB, FIB-SEM, SXT.

family_name

Taxonomy Family

Name of the family classification of the organism (e.g., Hominidae, Enterobacteriaceae).

fast_axis

Fast Axis

Orientation or direction of the fast acquisition axis, aggregated from any deposited map (primary, half-map, additional…

figure_filename

Figure filename

Names or paths of figures associated with the entry, usually used for visual representation in the EMDB entry page.

filename

Filename

Filename aggregated from any deposited map, including the primary map, half-maps, additional maps, or masks.

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