EMDB Solr Search Field Documentation

map_contour_primary

Primary map primary contour flag

Indicates if this contour level is the primary visualization level for the primary map.

map_contour_source

Primary map contour source

Origin or method used to define the contour level for the primary map.

map_data_type

Primary map data type

Type of numerical data stored in the primary map (e.g., float, integer).

map_dimensions_col

Primary map dimension (columns)

Number of grid points along the X or column axis in the primary map.

map_dimensions_row

Primary map dimension (rows)

Number of grid points along the Y or row axis in the primary map.

map_dimensions_sec

Primary map dimension (sections)

Number of grid points along the Z or section axis in the primary map.

map_fast_axis

Primary map fast axis

Fastest changing axis in the grid order of the primary map.

map_filename

Primary map filename

Name of the primary map file.

map_helical_axial_symmetry_details

Primary map helical axial symmetry details

Description of the helical symmetry applied to the primary map.

map_helical_delta_phi_value

Primary map helical delta phi (°)

Angular rotation per subunit along the helix of the primary map (in degrees).

map_helical_delta_z_value

Primary map helical delta z (Å)

Axial translation per subunit along the helix of the primary map (in Å).

map_label

Primary map label

Label or description associated with the primary map.

map_maximum_value

Primary map maximum value

Maximum density value in the primary map.

map_medium_axis

Primary map medium axis

Intermediate axis in the grid ordering of the primary map.

map_minimum_value

Primary map minimum value

Minimum density value in the primary map.

map_model_resolution_fsc_0143_value

FSC 0.143 map-model resolution

Resolution from FSC 0.143 calculated between map and model.

map_model_resolution_fsc_0333_value

FSC 0.333 map-model resolution

Resolution from FSC 0.333 calculated between map and model.

map_model_resolution_fsc_05_value

FSC 0.5 map-model resolution

Resolution from FSC 0.5 calculated between map and model.

map_model_resolution_fsc_halfbit_value

FSC half-bit map-model resolution

Resolution from FSC half-bit calculated between map and model.

map_model_resolution_fsc_onebit_value

FSC one-bit map-model resolution

Resolution from FSC one-bit calculated between map and model.

map_model_resolution_fsc_threesig_value

FSC three-sigma map-model resolution

Resolution from FSC three-sigma calculated between map and model.

map_pixel_spacing_x

Primary map pixel spacing X (Å)

Distance between voxels along the X axis of the primary map (in Å).

map_pixel_spacing_y

Primary map pixel spacing Y (Å)

Distance between voxels along the Y axis of the primary map (in Å).

map_pixel_spacing_z

Primary map pixel spacing Z (Å)

Distance between voxels along the Z axis of the primary map (in Å).

map_point_group

Primary map point group

Point group symmetry of the primary map.

map_release_date

Primary map release date

Date when the primary map was publicly released.

map_row

Primary map number of rows

Number of grid points along the Y or row axis in the primary map.

map_sec

Primary map number of sections

Number of grid points along the Z or section axis in the primary map.

map_size_kb

Primary map file size (KB)

Size of the primary map file in kilobytes.

map_slow_axis

Primary map slow axis

Slowest changing axis in the grid order of the primary map.

map_space_group

Primary map space group

Space group symmetry of the primary map.

map_spacing_x

Primary map spacing X (Å)

Grid spacing along the X axis of the primary map (in Å).

map_spacing_y

Primary map spacing Y (Å)

Grid spacing along the Y axis of the primary map (in Å).

map_spacing_z

Primary map spacing Z (Å)

Grid spacing along the Z axis of the primary map (in Å).

map_std_value

Primary map standard deviation

Value dispersion (standard deviation) across the density values of the primary map.

material

Material

Type of material used (e.g., grid, substrate, support film, or coating).

maximum_value

Maximum Value

Maximum voxel density or intensity value, aggregated from any deposited map (primary, half-map, additional, or mask).

medium_axis

Medium Axis

Orientation or direction of the medium-speed acquisition axis, aggregated from any deposited map (primary, half-map, ad…

merging_software

Merging Software

Software used for merging crystallographic or subimage data

merging_software_ft

Merging Software (facet)

Software used for merging crystallographic or subimage data

merging_software_sgt

Merging Software (suggest)

Software used for merging crystallographic or subimage data

microscope

Microscope

Name or model of the microscope used for imaging.

microscope_name

Microscope Name

Name or model of the microscope used for imaging.

microscope_name_ft

Microscope Name (facet)

Name or model of the microscope used for imaging.

microscope_name_sgt

Microscope Name (suggest)

Name or model of the microscope used for imaging.

microscope_type

Microscope Type

Type of microscope used (e.g., Transmission Electron Microscope, Scanning Electron Microscope).

microscopy_acceleration_voltage

Acceleration Voltage

Electron beam acceleration voltage in kilovolts (kV).

microscopy_avg_temperature

Average Temperature

Average specimen temperature during imaging.

microscopy_center_country

Microscopy center country

Country of the microscopy center.

microscopy_center_name

Microscopy center name

Name of the microscopy facility where data was collected.

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