Jonesia denitrificans

Taxonomy
Taxonomy database identifier: 43674
Superkingdom		Bacteria
Phylum		Firmicutes
Class		Actinobacteria
Subclass		Actinobacteridae
Order		Actinomycetales
Suborder		Micrococcineae
Species		denitrificans
Family		Jonesiaceae
Genus		Jonesia
Peptidase			View peptidase sequences from Jonesia denitrificans
Count of known and putative peptidases: 71, non-peptidase homologues 30
Completely sequences genomes from subspecies and strains				Protein coding genes
	To show all strains with completely sequenced genomes, click here.

Clan	Family	MEROPS ID	Peptidase or homologue (subtype)	MERNUM	Gene	Locus
AC	A8	unassigned	family A8 unassigned peptidases	MER0129940
AD	A24	unassigned	subfamily A24A unassigned peptidases	MER0129957		Jden_1340
CF	C15	C15.001	pyroglutamyl-peptidase I (prokaryote)	MER0129958		Jden_1230
CL	C60	unassigned	subfamily C60A unassigned peptidases	MER0129979
CO	C40	non-peptidase homologue	family C40 non-peptidase homologues	MER0129994
CO	C40	non-peptidase homologue	family C40 non-peptidase homologues	MER0130018		Jden_1987
CO	C40	non-peptidase homologue	family C40 non-peptidase homologues	MER0129987		Jden_2110
CO	C40	non-peptidase homologue	family C40 non-peptidase homologues	MER0129925		Jden_2429
G-	G5	unassigned	family G5 unassigned peptidases	MER0129921
G-	G5	unassigned	family G5 unassigned peptidases	MER0129929
MA	M1	M01.009	aminopeptidase N (actinomycete-type)	MER0129932		Jden_0943
MA	M1	M01.012	aminopeptidase G	MER0130000
MA	M3	unassigned	subfamily M3A unassigned peptidases	MER0129964
MA	M10	unassigned	subfamily M10A unassigned peptidases	MER0467139		Jden_0210
MA	M13	M13.009	Zmp1 peptidase (Mycobacterium-type)	MER0129952		Jden_0946
MA	M41	M41.015	MsFtsH g.p. (Mycobacterium smegmatis)	MER0129989
MA	M48	unassigned	subfamily M48B unassigned peptidases	MER0129971	htpX	Jden_0558
MD	M15	unassigned	subfamily M15B unassigned peptidases	MER0129968		Jden_0123
MD	M15	unassigned	subfamily M15B unassigned peptidases	MER0129983		Jden_0392
MD	M15	unassigned	subfamily M15B unassigned peptidases	MER0469732		Jden_1799
MD	M15	unassigned	subfamily M15B unassigned peptidases	MER0129967		Jden_2185
ME	M16	non-peptidase homologue	family M16 non-peptidase homologues	MER0129996
ME	M16	unassigned	subfamily M16B unassigned peptidases	MER0129995		Jden_1026
MF	M17	unassigned	family M17 unassigned peptidases	MER0130007		Jden_0809
MF	M17	unassigned	family M17 unassigned peptidases	MER0339986	pepA	Jden_1466
MG	M24	M24.033	aminopeptidase P (Streptomyces-type)	MER0129978		Jden_0703
MG	M24	M24.A06	At4g37040 (Arabidopsis thaliana)-type peptidase	MER0129928
MG	M24	unassigned	subfamily M24A unassigned peptidases	MER0129992
MG	M24	unassigned	subfamily M24A unassigned peptidases	MER0129933	map	Jden_0906
MH	M18	unassigned	family M18 unassigned peptidases	MER0129999		Jden_1636
MH	M20	non-peptidase homologue	subfamily M20D non-peptidase homologues	MER0372946		Jden_0023
MH	M20	unassigned	family M20D unassigned peptidases	MER0129953
MH	M20	unassigned	family M20D unassigned peptidases	MER0129984		Jden_0823
MH	M20	unassigned	family M20 unassigned peptidases	MER0129963
MH	M20	unassigned	family M20 unassigned peptidases	MER0130019
MH	M20	unassigned	family M20 unassigned peptidases	MER0130008		Jden_0805
MJ	M38	non-peptidase homologue	family M38 non-peptidase homologues	MER0129926
MJ	M38	non-peptidase homologue	family M38 non-peptidase homologues	MER0129997
MJ	M38	non-peptidase homologue	family M38 non-peptidase homologues	MER0129998
MJ	M38	unassigned	family M38 unassigned peptidases	MER0129949
MM	M50	unassigned	subfamily M50B unassigned peptidases	MER0129945
MM	M50	unassigned	family M50 unassigned peptidases	MER0129962
MO	M23	non-peptidase homologue	family M23 non-peptidase homologues	MER0129946
MO	M23	unassigned	subfamily M23B unassigned peptidases	MER0130016
MO	M23	unassigned	subfamily M23B unassigned peptidases	MER0388953		Jden_0330
MO	M23	unassigned	subfamily M23B unassigned peptidases	MER0386895		Jden_0866
NB	N6	N06.A01	FlhB protein (Escherichia coli)	MER0405843		Jden_2008
PA	S1	S01.494	Htra2 peptidase (Mycobacterium-type)	MER0301517	Jden_0535	Jden_0535
PA	S1	unassigned	subfamily S1C unassigned peptidases	MER0129938		Jden_1098
PA	S1	unassigned	subfamily S1C unassigned peptidases	MER0130006
PB	C44	C44.001	amidophosphoribosyltransferase precursor	MER0129955		Jden_2352
PB	C44	C44.003	glutamate synthase (NADPH) large chain	MER0129959		Jden_1219
PB	C44	non-peptidase homologue	family C44 non-peptidase homologues	MER0129976	glmS	Jden_0623
PB	T1	T01.005	bacterial proteasome, beta component	MER0129961
PB	T1	T01.980	bacterial proteasome, alpha subunit	MER0129960
PC	C26	C26.955	aminodeoxychorismate synthase, subunit II	MER0130010
PC	C26	C26.957	GMP synthase	MER0129973	guaA	Jden_0650
PC	C26	C26.964	CTP synthetase	MER0130005	pyrG	Jden_1132
PC	C26	C26.965	imidazole glycerol phosphate synthase subunit HisH	MER0129939
PC	C26	C26.A32	imidazoleglycerol-phosphate synthase (Pyrococcus furiosus)	MER0129930	pdxT	Jden_1601
PC	C26	unassigned	family C26 unassigned peptidases	MER0129927
PC	C26	unassigned	family C26 unassigned peptidases	MER0129969
PC	C26	unassigned	family C26 unassigned peptidases	MER0451208	purQ	Jden_2410
PC	C56	C56.001	PfpI peptidase	MER0129937		Jden_1901
PC	C56	non-peptidase homologue	family C56 non-peptidase homologues	MER0130009
PE	T5	unassigned	family T5 unassigned peptidases	MER0130014
SC	S9	S09.949	cephalosporin C deacetylase	MER0130015
SC	S9	unassigned	subfamily S9A unassigned peptidases	MER0130001		Jden_1717
SC	S9	unassigned	family S9 unassigned peptidases	MER0129931
SC	S9	unassigned	family S9 unassigned peptidases	MER0129954
SC	S9	unassigned	family S9 unassigned peptidases	MER0129956
SC	S9	unassigned	family S9 unassigned peptidases	MER0129972
SC	S33	S33.B15	PF3D7_1410100 g.p. (Plasmodium falciparum)	MER0129980
SC	S33	non-peptidase homologue	family S33 non-peptidase homologues	MER0129922
SC	S33	non-peptidase homologue	family S33 non-peptidase homologues	MER0129943
SC	S33	unassigned	family S33 unassigned peptidases	MER0129924
SC	S33	unassigned	family S33 unassigned peptidases	MER0129966
SC	S33	unassigned	family S33 unassigned peptidases	MER0129970
SC	S33	unassigned	family S33 unassigned peptidases	MER0129985
SC	S33	unassigned	family S33 unassigned peptidases	MER0129986
SC	S33	unassigned	family S33 unassigned peptidases	MER0129993
SE	S12	unassigned	family S12 unassigned peptidases	MER0129965		Jden_1189
SE	S13	S13.004	penillin-binding protein 4	MER0129988		Jden_2108
SF	S24	S24.001	repressor LexA	MER0129941	lexA	Jden_1054
SF	S26	S26.025	signal peptidase sipX	MER0129948
SJ	S16	S16.012	SepM peptidase (Streptococcus mutans)	MER0129977		Jden_0723
SJ	S16	S16.A04	DNA repair protein RadA (Escherichia coli)	MER0130004
SJ	S16	non-peptidase homologue	family S16 non-peptidase homologues	MER0129947
SK	S14	S14.008	ClpP1 peptidase (Streptomyces-type)	MER0129951	clpP	Jden_0955
SK	S14	S14.009	ClpP2 peptidase (Streptomyces-type)	MER0129950
ST	S54	unassigned	family S54 unassigned peptidases	MER0130011
U-	U72	U72.001	Dop isopeptidase	MER0402530
U-	U72	U72.001	Dop isopeptidase	MER0402817

GENOME ANALYSIS: Comparison with 13 completely sequenced genomes from species denitrificans
Family	Comment
C60	significant presence (1 homologues)
M13	significant presence (1 homologues)
M15	lineage specific expansion (4 homologues)
M18	significant presence (1 homologues)
U72	significant presence (2 homologues)