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Photobacterium damselae

Taxonomy
Taxonomy database identifier: 38293
Superkingdom Bacteria
Phylum Proteobacteria
Class Gammaproteobacteria
Order Vibrionales
Family Vibrionaceae
Genus Photobacterium
Species damselae
Peptidase View peptidase sequences from Photobacterium damselae
Count of known and putative peptidases: 68, non-peptidase homologues 11
Completely sequences genomes from subspecies and strains Protein coding genes

To show all strains with completely sequenced genomes, click here.

Clan Family MEROPS ID Peptidase or homologue (subtype) MERNUM Gene Link Locus Megabases
A- A39 unassigned family A39 unassigned peptidases MER1377188
A- A39 unassigned family A39 unassigned peptidases MER1377182
AC A8 A08.001 signal peptidase II MER0406361 lspA
AD A24 A24.001 type 4 prepilin peptidase 1 MER0232857 VDA_001188
AE A31 unassigned family A31 unassigned peptidases MER0232224 VDA_002213
CA C39 unassigned family C39 unassigned peptidases MER0237340 orf5
CF C15 C15.001 pyroglutamyl-peptidase I (prokaryote) MER0292437 pcp VDA_000479
CL C82 C82.A03 YnhG protein (Escherichia coli) MER0463702 VDA_000572
CL C82 unassigned subfamily C82A unassigned peptidases MER0743285 UB36_01225
CL C82 unassigned subfamily C82A unassigned peptidases MER0243980 VDA_000812 VDA_000812
CO C40 C40.004 spr peptidase MER0377368 VDA_000450
CO C40 unassigned family C40 unassigned peptidases MER0722782 UB36_00655
CO C40 unassigned family C40 unassigned peptidases MER0453968 VDA_000779
G- G5 unassigned family G5 unassigned peptidases MER0940068 UB36_00080
G- G5 unassigned family G5 unassigned peptidases MER0938396 VDA_001571
MA M1 M01.005 alanyl aminopeptidase (bacterial-type) MER0811812 pepN
MA M1 M01.005 alanyl aminopeptidase (bacterial-type) MER0335671 VDA_002082
MA M3 M03.004 oligopeptidase A MER0334361 VDA_003183
MA M32 unassigned family M32 unassigned peptidases MER0857696 UB36_14840
MA M32 unassigned family M32 unassigned peptidases MER0295102 VDA_002108
MA M41 M41.001 FtsH peptidase MER0277370 ftsH VDA_002838
MA M48 M48.002 HtpX peptidase MER0296069 htpX VDA_002294
MA M66 M66.001 StcE peptidase MER0329876 VDA_001987
MA M85 unassigned family M85 unassigned peptidases MER0195394 aip56
MC M14 non-peptidase homologue subfamily M14D non-peptidase homologues MER0238900 VDA_000742
MC M14 unassigned subfamily M14D unassigned peptidases MER0836062 UB36_00085
MC M14 unassigned family M14 unassigned peptidases MER0835746 UB36_01530
MD M74 M74.001 murein endopeptidase MER1262422
MD M74 M74.001 murein endopeptidase MER0313028 VDA_002747
ME M16 M16.008 Ste23 peptidase MER0314986 VDA_002563
ME M16 unassigned subfamily M16A unassigned peptidases MER0921359 UB36_05085
ME M16 unassigned subfamily M16B unassigned peptidases MER0392048 VDA_001303
MF M17 M17.003 PepA aminopeptidase MER0289638 pepA VDA_002919
MF M17 M17.004 PepB aminopeptidase MER0340687 VDA_002706
MF M17 M17.004 PepB aminopeptidase MER0340381 VDA_002707
MF M17 unassigned family M17 unassigned peptidases MER0340317 VDA_000327
MG M24 non-peptidase homologue subfamily M24B non-peptidase homologues MER0396416 VDA_000377
MG M24 unassigned subfamily M24A unassigned peptidases MER0318933 map VDA_001357
MG M24 unassigned subfamily M24B unassigned peptidases MER0482137
MH M20 M20.003 peptidase T MER0932179 pepT
MH M20 M20.003 peptidase T MER0303221 pepT
MH M20 M20.007 Xaa-His dipeptidase MER0839471 UB36_05640
MH M20 M20.007 Xaa-His dipeptidase MER0303553 VDA_002652
MH M20 unassigned subfamily M20A unassigned peptidases MER0849790 dapE
MH M20 unassigned subfamily M20A unassigned peptidases MER0302770 VDA_001824
MH M20 unassigned subfamily M20A unassigned peptidases MER0280600 VDA_001601
MH M20 unassigned subfamily M20A unassigned peptidases MER0475138
MH M20 unassigned subfamily M20B unassigned peptidases MER0370840 VDA_001768
MH M20 unassigned subfamily M20B unassigned peptidases MER0370762 VDA_001918
MH M20 unassigned family M20D unassigned peptidases MER0374138 VDA_001960
MH M20 unassigned family M20D unassigned peptidases MER0372938 VDA_000374
MH M20 unassigned family M20D unassigned peptidases MER0373828 VDA_000785
MH M42 non-peptidase homologue family M42 non-peptidase homologues MER0879574 UB36_05640
MH M42 non-peptidase homologue family M42 non-peptidase homologues MER0880054 VDA_002652
MJ M38 M38.982 urease MER0866928 ureC
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0863964 UB36_01575
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0860084 VDA_000567
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0867744 VDA_001033
MM M50 M50.004 RseP peptidase MER0891892 VDA_001365
MO M23 M23.011 YebA peptidase MER0314570 VDA_002494
MO M23 M23.011 YebA peptidase MER0388745 VDA_001149
MO M23 M23.014 ShyA D,D-endopeptidase (Vibrio cholerae) MER0387749 VDA_002898
MO M23 M23.950 YibP g.p. (Escherichia sp.) MER0479463
MO M23 non-peptidase homologue subfamily M23B non-peptidase homologues MER0478024
MO M23 unassigned subfamily M23B unassigned peptidases MER0314323 VDA_002803
MO M23 unassigned family M23 unassigned peptidases MER0479895
MU M103 M103.UNW family M103 non-peptidase homologues MER0238690 VDA_003512
MU M103 M103.UPW family M103 unassigned peptidases MER0329387 VDA_000860
NB N6 N06.001 YscU protein MER0326805
NB N6 N06.A01 FlhB protein (Escherichia coli) MER0405258 VDA_002591
PA S1 S01.275 DegS peptidase MER0020257
PA S1 non-peptidase homologue subfamily S1A non-peptidase homologues MER0953934 UB36_01335
PA S1 unassigned subfamily S1A unassigned peptidases MER0958386 UB36_01135
PA S1 unassigned subfamily S1A unassigned peptidases MER0953177 UB36_01750
PA S1 unassigned subfamily S1A unassigned peptidases MER0954345 UB36_01755
PA S1 unassigned subfamily S1A unassigned peptidases MER0216377 VDA_002722
PA S1 unassigned subfamily S1A unassigned peptidases MER0216642 VDA_000800
PA S1 unassigned subfamily S1A unassigned peptidases MER0217551 VDA_002105
PA S1 unassigned subfamily S1C unassigned peptidases MER0020255 VDA_003529
PB C44 C44.001 amidophosphoribosyltransferase precursor MER0454629
PB C44 C44.003 glutamate synthase (NADPH) large chain MER0459403
PB C44 non-peptidase homologue family C44 non-peptidase homologues MER0459402
PB C44 non-peptidase homologue family C44 non-peptidase homologues MER0456231
PB C59 C59.001 penicillin V acylase precursor MER0276464 VDA_000638
PB C59 C59.001 penicillin V acylase precursor MER0279675 VDA_001126
PB C59 unassigned family C59 unassigned peptidases MER0914043 UB36_04875
PB C59 unassigned family C59 unassigned peptidases MER0914473 UB36_00615
PB C59 unassigned family C59 unassigned peptidases MER0330140 VDA_002269
PB C69 C69.001 dipeptidase A MER0230052 VDA_001723
PB C69 unassigned family C69 unassigned peptidases MER0313759 VDA_000989
PB C95 non-peptidase homologue family C95 non-peptidase homologues MER0745758 UB36_14995
PB T1 T01.006 HslV component of HslUV peptidase MER0275738 hslV VDA_003386
PB T2 unassigned family T2 unassigned peptidases MER1095810 VDA_000326
PB T2 unassigned family T2 unassigned peptidases MER0307016 VDA_001040
PB T3 T03.001 gamma-glutamyltransferase 1 (bacterial-type) MER0378799 VDA_003150
PC C26 C26.955 aminodeoxychorismate synthase, subunit II MER0436282
PC C26 C26.960 TrpD protein (anthranilate synthase component II) MER0439453
PC C26 C26.964 CTP synthetase MER0448273
PC C26 C26.965 imidazole glycerol phosphate synthase subunit HisH MER0445250
PC C26 unassigned family C26 unassigned peptidases MER0443429
PC C26 unassigned family C26 unassigned peptidases MER0440993
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0892755 UB36_05735
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0385389 orf167/VDA_002198
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0733715 VDA_001057
PC S51 unassigned family S51 unassigned peptidases MER0314055 VDA_001621
SB S8 unassigned subfamily S8A unassigned peptidases MER0979141 UB36_03710
SB S8 unassigned subfamily S8A unassigned peptidases MER0975662 VDA_001952
SC S9 S09.A40 YqiA protein (Escherichi coli) MER0213918
SC S9 non-peptidase homologue subfamily S9B non-peptidase homologues MER1001820 P91278ORF_005
SC S9 non-peptidase homologue subfamily S9B non-peptidase homologues MER0997115 VDA_002690
SC S9 unassigned subfamily S9A unassigned peptidases MER0996147 UB36_02660
SC S9 unassigned family S9 unassigned peptidases MER0998552 UB36_05880
SC S33 unassigned family S33 unassigned peptidases MER0211105
SE S11 S11.002 murein-DD-endopeptidase MER0353018 VDA_002139
SE S11 S11.003 penicillin-binding protein 6 MER0351826 VDA_001421
SE S11 non-peptidase homologue family S11 non-peptidase homologues MER0972372 bla/pbpG
SE S11 unassigned family S11 unassigned peptidases MER0942908 UB36_14835
SE S11 unassigned family S11 unassigned peptidases MER0351434 VDA_002107
SE S11 unassigned family S11 unassigned peptidases MER0351321 VDA_000875
SE S12 non-peptidase homologue family S12 non-peptidase homologues MER0353745 VDA_000689
SE S13 S13.001 D-Ala-D-Ala peptidase C MER0232547 VDA_002843
SF S24 S24.001 repressor LexA MER0236965 lexA VDA_003315
SF S24 S24.003 UmuD protein MER0375888 VDA_000654
SF S24 unassigned family S24 unassigned peptidases MER1043488 UB36_00490
SF S24 unassigned family S24 unassigned peptidases MER1040863 VDA_002040
SF S24 unassigned family S24 unassigned peptidases MER1044762 VDA_000934
SF S26 S26.001 signal peptidase I MER0264604 VDA_001261
SF S26 S26.014 TraF peptidase MER0267971 TraF
SF S26 S26.014 TraF peptidase MER0171897 A613_p23
SF S26 non-peptidase homologue subfamily S26A non-peptidase homologues MER1049046 P91278ORF_060
SF S26 non-peptidase homologue subfamily S26A non-peptidase homologues MER1050190 HMPREF1766_00878
SF S26 unassigned subfamily S26A unassigned peptidases MER1046175 UB36_00840
SJ S16 S16.001 Lon-A peptidase MER0276735 VDA_001551
SJ S16 S16.A04 DNA repair protein RadA (Escherichia coli) MER0474400
SJ S16 S16.A10 ycbZ (Escherichia coli) MER0471931
SJ S16 unassigned family S16 unassigned peptidases MER1037963 UB36_14730
SJ S16 unassigned family S16 unassigned peptidases MER0361890 VDA_001001
SK S14 S14.001 peptidase Clp (type 1) MER0299124 clpP
SK S14 non-peptidase homologue family S14 non-peptidase homologues MER0359904 VDA_002051
SK S41 S41.001 C-terminal processing peptidase-1 MER0288423 VDA_002079
SK S41 unassigned subfamily S41A unassigned peptidases MER1048424 UB36_14655
SK S49 non-peptidase homologue subfamily S49A unassigned non-peptidase homologues MER1069220 UB36_04130
SK S49 non-peptidase homologue subfamily S49C non-peptidase homologues MER1072918 VDA_002051
SK S49 unassigned subfamily S49B unassigned peptidases MER0074578 P99018ORF_151
SK S49 unassigned subfamily S49B unassigned peptidases MER1069099 OV14_1780
SK S49 unassigned subfamily S49B unassigned peptidases MER1066033 sohB/VDA_002386
SK S49 unassigned subfamily S49B unassigned peptidases MER0298228 VDA_001586
SK S49 unassigned subfamily S49C unassigned peptidases MER1073042 UB36_01100
SS S66 unassigned family S66 unassigned peptidases MER0320288 VDA_001944
ST S54 unassigned family S54 unassigned peptidases MER1079418 UB36_02340
ST S54 unassigned family S54 unassigned peptidases MER1076859 VDA_001556
ST S54 unassigned family S54 unassigned peptidases MER1081964 VDA_003308
ST S54 unassigned family S54 unassigned peptidases MER1076059 VDA_000727
U- U32 U32.003 collagenase (Salmonella-type) MER0229750 VDA_001478
U- U32 unassigned family U32 unassigned peptidases MER0403630
U- U32 unassigned family U32 unassigned peptidases MER0404056

GENOME ANALYSIS: Comparison with 9 completely sequenced genomes from genus Photobacterium
Family Comment
C15 significant presence (1 homologues)
C59 lineage specific expansion (5 homologues)
C95 significant presence (1 homologues)
M17 lineage specific expansion (4 homologues)
M85 significant presence (1 homologues)
S12 significant decrease in homologues (1 homologues)
S16 lineage specific expansion (5 homologues)
S24 lineage specific expansion (5 homologues)
S26 lineage specific expansion (6 homologues)
S49 lineage specific expansion (7 homologues)

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