Family C59

Family

Summary Holotypes Alignment Tree Genomes Structure Literature Architecture

Summary for family C59

Family type peptidaseC59.001 - penicillin V acylase precursor (Lysinibacillus sphaericus), MEROPS Accession MER0020029 (peptidase unit: 4-338)
Content of familyPeptidase family C59 contains Cys-dependent Ntn-hydrolases.
History Identifier created: MEROPS 6.4 (24 September 2003)
Cys-dependent Ntn-hydrolases are only classified as peptidases by virtue of their self-processing activity. The autolysis step produces a mature amidase with Cys1 as the nucleophile. All peptidase activity is lost on conversion to the mature peptidase.
Catalytic typeCysteine
Active site residuesC4 
Active siteThe catalytic Cys becomes the new N-terminus following autolysis (see the Alignment).
Activities and specificitiesThe only known peptidase activity is the autolytic cleavage of the penicillin V acylase precursor protein (C59.001).
Molecular structureThe mature peptidase is a homotetramer and has a fold that is similar to that of the proteasome (##XT01.001##). There are two anti-parallel beta sheets sandwiched between two pairs of anti-parallel alpha helices. There are extensions from one of the pairs of alpha helices and also at the C-terminus, which interact with other monomers in the tetramer and provide stability (Suresh et al., 1999).
ClanPB
SubclanPB(C)
Distribution of family Bacteria details  
Archaea details  
Protozoa details  
Fungi -  
Plants details  
Animals details  
Viruses details  
Biological functions
Pharmaceutical and biotech relevancePenicillin V acylase has an important industrial role in the production of penicillins.
Statistics for family C59Sequences:1969
Identifiers:2
Identifiers with PDB entries:3
Downloadable files Sequence library (FastA format)
Sequence alignment (FastA format)
Phylogenetic tree (Newick format)
Other databases CATH 3.60.60.10
INTERPRO IPR003199
PANTHER PTHR35527
PFAM PF02275
SCOP 56248
Peptidases and Homologues MEROPS ID Structure
penicillin V acylase precursorC59.001Yes
choloylglycine hydrolaseC59.951Yes
Family C59 non-peptidase homologuesnon-peptidase homologue-
Family C59 unassigned peptidasesunassignedYes