Shewanella woodyi

Taxonomy
Taxonomy database identifier: 60961
Superkingdom Bacteria
Phylum Proteobacteria
Class Gammaproteobacteria
Order Alteromonadales
Family Alteromonadaceae
Genus Shewanella
Species woodyi
Peptidase View peptidase sequences from Shewanella woodyi
Count of known and putative peptidases: 150, non-peptidase homologues 65
Completely sequences genomes from subspecies and strains Protein coding genes

To show all strains with completely sequenced genomes, click here.

Clan Family MEROPS ID Peptidase or homologue (subtype) MERNUM Gene Link Locus Megabases
A- A39 non-peptidase homologue family A39 non-peptidase homologues MER1375863
AC A8 A08.001 signal peptidase II MER0087169 lspA Swoo_1292
AD A24 A24.001 type 4 prepilin peptidase 1 MER0087189 Swoo_0303
AD A24 unassigned subfamily A24A unassigned peptidases MER0087262 Swoo_0603
CA C39 C39.005 colicin V processing peptidase MER0093429 Swoo_3807
CA C39 unassigned family C39 unassigned peptidases MER0087249
CA C93 unassigned family C93 unassigned peptidases MER0393875 Swoo_0472
CL C60 unassigned subfamily C60A unassigned peptidases MER0734753 Swoo_2125
CL C82 C82.A01 LdtF protein (Escherichia coli) MER0244126 Swoo_2767
CL C82 C82.A01 LdtF protein (Escherichia coli) MER0244157 Swoo_3246
CL C82 C82.A03 YnhG protein (Escherichia coli) MER0099538 Swoo_1163
CO C40 C40.004 spr peptidase MER0094115 Swoo_4872
MA M1 M01.005 alanyl aminopeptidase (bacterial-type) MER0087167 Swoo_2134
MA M1 M01.031 cold-active aminopeptidase (Colwellia psychrerythraea)-type peptidase MER0087197 Swoo_3448
MA M1 non-peptidase homologue family M1 non-peptidase homologues MER0087254 Swoo_0962
MA M1 unassigned family M1 unassigned peptidases MER0087186
MA M2 unassigned family M2 unassigned peptidases MER0087227 Swoo_2544
MA M3 M03.004 oligopeptidase A MER0087244 Swoo_0124
MA M3 unassigned subfamily M3A unassigned peptidases MER0087248 Swoo_1927
MA M4 M04.016 PA peptidase (Aeromonas-type) MER0087265 Swoo_0557
MA M4 M04.016 PA peptidase (Aeromonas-type) MER0087209 Swoo_3129
MA M6 unassigned family M6 unassigned peptidases MER0087222 Swoo_4827
MA M9 M09.001 collagenase V (Vibrio spp.) MER0087179 Swoo_0042
MA M9 unassigned subfamily M9A unassigned peptidases MER0087259 Swoo_0648
MA M9 unassigned subfamily M9A unassigned peptidases MER0087196 Swoo_3449
MA M13 unassigned family M13 unassigned peptidases MER0087190 Swoo_0324
MA M13 unassigned family M13 unassigned peptidases MER0087256 Swoo_0911
MA M13 unassigned family M13 unassigned peptidases MER0087235 Swoo_3909
MA M32 unassigned family M32 unassigned peptidases MER0087231 Swoo_1082
MA M35 M35.003 EcpA peptidase MER0099518 Swoo_1511
MA M36 unassigned family M36 unassigned peptidases MER0093216 Swoo_3767
MA M41 M41.001 FtsH peptidase MER0079639 ftsH Swoo_3568
MA M43 unassigned family M43 unassigned peptidases MER0882029 Swoo_3915
MA M48 M48.002 HtpX peptidase MER0079551 htpX Swoo_1870
MA M48 M48.023 BepA (Escherichia coli) MER0087205
MA M48 unassigned subfamily M48C unassigned peptidases MER0087280 Swoo_0456
MA M48 unassigned subfamily M48C unassigned peptidases MER0087263 Swoo_0567
MA M48 unassigned subfamily M48C unassigned peptidases MER0087274
MA M56 unassigned family M56 unassigned peptidases MER0934543 Swoo_3738
MA M61 unassigned family M61 unassigned peptidases MER0087247 Swoo_3456
MA M72 unassigned family M72 unassigned peptidases MER0078629 Swoo_3429
MA M90 unassigned family M90 unassigned peptidases MER0321637 Swoo_1531
MC M14 non-peptidase homologue subfamily M14A non-peptidase homologues MER0087242 Swoo_0158
MC M14 non-peptidase homologue family M14 non-peptidase homologues MER0087220
MC M14 unassigned subfamily M14A unassigned peptidases MER0087238 Swoo_2953
MC M14 unassigned subfamily M14D unassigned peptidases MER0087161 Swoo_2295
MC M14 unassigned subfamily M14D unassigned peptidases MER0087195 Swoo_3253
MC M14 unassigned family M14 unassigned peptidases MER0099520 Swoo_1433
MD M15 non-peptidase homologue subfamily M15A non-peptidase homologues MER0162175 Swoo_2154
MD M15 unassigned family M15 unassigned peptidases MER0087204
MD M74 unassigned family M74 unassigned peptidases MER0087264 Swoo_0560
ME M16 non-peptidase homologue subfamily M16B non-peptidase homologues MER0087201 Swoo_0261
ME M16 non-peptidase homologue subfamily M16B non-peptidase homologues MER0087202 Swoo_0261
ME M16 non-peptidase homologue family M16 non-peptidase homologues MER0087216 Swoo_3327
ME M16 unassigned subfamily M16A unassigned peptidases MER0087241 Swoo_3021
ME M16 unassigned subfamily M16B unassigned peptidases MER0087185 Swoo_0759
ME M16 unassigned subfamily M16B unassigned peptidases MER0087215 Swoo_3327
ME M16 unassigned subfamily M16B unassigned peptidases MER0087203 Swoo_0260
ME M16 unassigned family M16 unassigned peptidases MER0087199 Swoo_2248
MF M17 M17.003 PepA aminopeptidase MER0087232 pepA1 Swoo_1076
MF M17 unassigned family M17 unassigned peptidases MER0087180 Swoo_3796
MF M17 unassigned family M17 unassigned peptidases MER0087210 Swoo_3188
MF M17 unassigned family M17 unassigned peptidases MER0087240 pepA2 Swoo_2996
MF M17 unassigned family M17 unassigned peptidases MER0087272 Swoo_3602
MG M24 M24.001 methionyl aminopeptidase 1 (Escherichia-type) MER0087170 Swoo_3282
MG M24 M24.003 Xaa-Pro dipeptidase (bacteria-type) MER0087178 pepQ Swoo_0022
MG M24 non-peptidase homologue subfamily M24B non-peptidase homologues MER0087245 Swoo_0108
MG M24 unassigned subfamily M24B unassigned peptidases MER0087230 Swoo_1096
MG M24 unassigned subfamily M24B unassigned peptidases MER0087229 Swoo_1099
MG M24 unassigned subfamily M24B unassigned peptidases MER0087206 Swoo_2816
MG M24 unassigned subfamily M24B unassigned peptidases MER1244273
MH M20 M20.003 peptidase T MER0087251 pepT Swoo_4149
MH M20 M20.007 Xaa-His dipeptidase MER0091916 Swoo_3603
MH M20 unassigned subfamily M20A unassigned peptidases MER0091918 Swoo_0328
MH M20 unassigned family M20D unassigned peptidases MER0091920 Swoo_3374
MH M20 unassigned family M20D unassigned peptidases MER0091917 Swoo_0112
MH M20 unassigned family M20D unassigned peptidases MER0091919 Swoo_0259
MH M20 unassigned family M20 unassigned peptidases MER0852038 Swoo_1928
MH M28 unassigned subfamily M28D unassigned peptidases MER0087156 Swoo_1286
MH M28 unassigned subfamily M28E unassigned peptidases MER0087173 Swoo_2747
MH M28 unassigned subfamily M28F unassigned peptidases MER0087261 Swoo_0637
MJ M19 non-peptidase homologue family M19 non-peptidase homologues MER0093762 Swoo_0845
MJ M19 non-peptidase homologue family M19 non-peptidase homologues MER0087258 Swoo_0814
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0099624 Swoo_0015
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0099536 Swoo_1186
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0099523 Swoo_1313
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0866982 Swoo_3741
MM M50 unassigned subfamily M50B unassigned peptidases MER0895074 Swoo_3274
MM M50 unassigned subfamily M50B unassigned peptidases MER0087250
MO M23 M23.014 ShyA D,D-endopeptidase (Vibrio cholerae) MER0087183 Swoo_1211
MO M23 M23.014 ShyA D,D-endopeptidase (Vibrio cholerae) MER0087175 Swoo_3059
MO M23 non-peptidase homologue subfamily M23B non-peptidase homologues MER0087171
MO M23 non-peptidase homologue subfamily M23B non-peptidase homologues MER0087174 Swoo_2783
MO M23 non-peptidase homologue subfamily M23B non-peptidase homologues MER0087224 Swoo_4878
MO M23 unassigned subfamily M23B unassigned peptidases MER0087152 Swoo_4526
MS M75 unassigned family M75 unassigned peptidases MER0099562 Swoo_0791
MU M103 M103.001 TldD peptidase (Escherichia coli) MER0087270
MU M103 M103.UNW family M103 non-peptidase homologues MER0087269 Swoo_4388
NB N6 N06.A01 FlhB protein (Escherichia coli) MER0280568 Swoo_1631
PA S1 unassigned subfamily S1A unassigned peptidases MER0087194
PA S1 unassigned subfamily S1A unassigned peptidases MER0087273 Swoo_3593
PA S1 unassigned subfamily S1B unassigned peptidases MER0087163 Swoo_4491
PA S1 unassigned subfamily S1C unassigned peptidases MER0280493 Swoo_4225 Swoo_4225
PA S1 unassigned subfamily S1C unassigned peptidases MER0087267 Swoo_4226
PA S1 unassigned subfamily S1D unassigned peptidases MER0099603 Swoo_0115
PA S46 S46.003 dipeptidyl-peptidase BII (Pseudoxanthomonas mexicana) MER0082302 Swoo_3877
PA S46 S46.003 dipeptidyl-peptidase BII (Pseudoxanthomonas mexicana) MER0076258 Swoo_4208
PB C44 C44.001 amidophosphoribosyltransferase precursor MER0093431 Swoo_2980
PB C44 C44.003 glutamate synthase (NADPH) large chain MER0099526 Swoo_1221
PB C44 non-peptidase homologue family C44 non-peptidase homologues MER0093430 Swoo_4892
PB C44 non-peptidase homologue family C44 non-peptidase homologues MER0458030 asnB Swoo_2749
PB C59 C59.001 penicillin V acylase precursor MER0093685 Swoo_2365
PB C59 unassigned family C59 unassigned peptidases MER0914528 Swoo_4492
PB S45 S45.003 cephalosporin C acylase precursor MER0087172
PB S45 S45.004 acyl-homoserine lactone acylase MER0087243 Swoo_0136
PB T1 T01.006 HslV component of HslUV peptidase MER0087271 hslV Swoo_4429
PB T2 unassigned family T2 unassigned peptidases MER0087208 Swoo_2686
PB T3 T03.001 gamma-glutamyltransferase 1 (bacterial-type) MER0091270 Swoo_1929
PB T3 T03.025 oxamate amidohydrolase proenzyme (Klebsiella pneumonia) MER0091269 Swoo_0999
PC C26 C26.955 aminodeoxychorismate synthase, subunit II MER0435770 Swoo_4160
PC C26 C26.960 TrpD protein (anthranilate synthase component II) MER0439472 Swoo_2913
PC C26 C26.961 PuuD protein MER0087228 Swoo_1129
PC C26 C26.965 imidazole glycerol phosphate synthase subunit HisH MER0444568 hisH Swoo_2088
PC C26 C26.A07 At1g63660 (Arabidopsis thaliana) MER0099510 guaA Swoo_1560
PC C26 unassigned family C26 unassigned peptidases MER0445578 Swoo_2104
PC C26 unassigned family C26 unassigned peptidases MER0441452 carA Swoo_3578
PC C56 C56.972 phosphoribosylformylglycinamidine synthase MER0099509 Swoo_1564
PC C56 C56.975 ES1 protein homolog, mitochondrial MER0160539 Swoo_0061
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0075415 Swoo_3847
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0099604 Swoo_0102
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0164537 Swoo_2399
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0166099 Swoo_4869
PC C56 unassigned family C56 unassigned peptidases MER0733828 Swoo_2968
PC S51 non-peptidase homologue family S51 non-peptidase homologues MER0087158 Swoo_2119
PC S51 unassigned family S51 unassigned peptidases MER1357511
SB S8 S08.050 secreted peptidase A MER0087187 Swoo_2373
SB S8 S08.125 AspA (Aeromonas sobria)-type peptidase MER0090842 Swoo_4488
SB S8 unassigned subfamily S8A unassigned peptidases MER0090841
SB S8 unassigned subfamily S8A unassigned peptidases MER0087260 Swoo_0647
SB S8 unassigned subfamily S8A unassigned peptidases MER0099522 Swoo_1394
SB S8 unassigned subfamily S8A unassigned peptidases MER0087253 Swoo_1500
SB S8 unassigned subfamily S8A unassigned peptidases MER0087176 Swoo_3041
SB S8 unassigned subfamily S8A unassigned peptidases MER0087188 Swoo_2359
SB S8 unassigned subfamily S8A unassigned peptidases MER0087198 Swoo_3431
SB S8 unassigned subfamily S8A unassigned peptidases MER0087207 Swoo_2666
SB S8 unassigned subfamily S8A unassigned peptidases MER0087218 Swoo_4648
SB S8 unassigned subfamily S8A unassigned peptidases MER0087275 Swoo_3530
SC S9 S09.010 oligopeptidase B MER0087221 Swoo_4763
SC S9 S09.012 dipeptidyl-peptidase 5 MER0087200 Swoo_2228
SC S9 S09.021 glutamyl endopeptidase C MER0087184 Swoo_1208
SC S9 S09.071 trilobed protease MER0087237 Swoo_2940
SC S9 S09.074 tyrosyl aminopeptidase (Raphanus-type) MER0087211 Swoo_3193
SC S9 S09.A39 YeiG protein (Escherichi coli) MER0099580 Swoo_0376
SC S9 S09.A77 dpf-6 g.p. (Caenorhabditis elegans) MER0087165 Swoo_4483
SC S9 S09.A77 dpf-6 g.p. (Caenorhabditis elegans) MER0087166 Swoo_4518
SC S9 S09.A77 dpf-6 g.p. (Caenorhabditis elegans) MER0087268 Swoo_4261
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0087182 Swoo_0698
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0099547 Swoo_0924
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0099521 Swoo_1402
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0087234 Swoo_3891
SC S9 unassigned subfamily S9A unassigned peptidases MER0087181 Swoo_3769 Swoo_3769
SC S9 unassigned subfamily S9A unassigned peptidases MER0087266 Swoo_0529 Swoo_0529
SC S9 unassigned subfamily S9A unassigned peptidases MER0087154 Swoo_2736
SC S9 unassigned subfamily S9B unassigned peptidases MER0087193 Swoo_3243
SC S9 unassigned subfamily S9B unassigned peptidases MER0087252 Swoo_4159
SC S9 unassigned subfamily S9C unassigned peptidases MER0088898 Swoo_1126 Swoo_1126
SC S9 unassigned subfamily S9C unassigned peptidases MER0087164 Swoo_4490
SC S9 unassigned family S9 unassigned peptidases MER0087279 Swoo_0393
SC S9 unassigned family S9 unassigned peptidases MER0087257 Swoo_0844
SC S9 unassigned family S9 unassigned peptidases MER0087162 Swoo_4565
SC S9 unassigned family S9 unassigned peptidases MER0087246 Swoo_3465
SC S15 non-peptidase homologue family S15 non-peptidase homologues MER1025409 Swoo_4159
SC S15 non-peptidase homologue family S15 non-peptidase homologues MER1025759 Swoo_4483
SC S15 unassigned family S15 unassigned peptidases MER1022325 Swoo_0844
SC S33 S33.001 prolyl aminopeptidase MER0075457 Swoo_4617
SC S33 S33.001 prolyl aminopeptidase MER0075452 Swoo_2262
SC S33 S33.010 SCO7095-type peptidase MER0099607 Swoo_0051
SC S33 S33.A46 YheT protein (Escherichia coli) MER0099565 Swoo_0670
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0209825 Swoo_2285
SC S33 unassigned family S33 unassigned peptidases MER0099593 bioH Swoo_0156
SC S33 unassigned family S33 unassigned peptidases MER0099591 Swoo_0208
SC S33 unassigned family S33 unassigned peptidases MER0212689 Swoo_3543
SC S33 unassigned family S33 unassigned peptidases MER0213835 Swoo_4864
SE S11 unassigned family S11 unassigned peptidases MER0087191 Swoo_3712
SE S12 unassigned family S12 unassigned peptidases MER0075240 Swoo_2118
SE S12 unassigned family S12 unassigned peptidases MER0099560 Swoo_0904
SE S12 unassigned family S12 unassigned peptidases MER0421878 Swoo_4500
SE S13 S13.001 D-Ala-D-Ala peptidase C MER0136977 Swoo_2324
SF S24 S24.001 repressor LexA MER0075458 lexA Swoo_0180
SF S24 S24.003 UmuD protein MER0076257 Swoo_2465
SF S26 S26.001 signal peptidase I MER0087153 Swoo_1242
SF S26 S26.026 PA1303 peptidase (Pseudomonas sp.) MER0087217 Swoo_0360
SJ S16 S16.001 Lon-A peptidase MER0124200 Swoo_3111
SJ S16 S16.A04 DNA repair protein RadA (Escherichia coli) MER0472517 Swoo_3540
SJ S16 S16.A10 ycbZ (Escherichia coli) MER0087155 Swoo_2149
SJ S16 unassigned family S16 unassigned peptidases MER0087177 Swoo_2463
SK S14 S14.001 peptidase Clp (type 1) MER0137393 clpP Swoo_3113
SK S41 S41.001 C-terminal processing peptidase-1 MER0087168 Swoo_2133
SK S41 S41.001 C-terminal processing peptidase-1 MER0140288 Swoo_2133
SK S41 S41.004 C-terminal processing peptidase-3 MER0087225 Swoo_4879
SK S41 S41.012 Pep putative peptidase (Vibrio-type) MER0087219
SK S41 non-peptidase homologue subfamily S41B non-peptidase homologues MER0087213 Swoo_3315
SK S41 non-peptidase homologue subfamily S41B non-peptidase homologues MER0087214 Swoo_3315
SK S41 non-peptidase homologue subfamily S41B non-peptidase homologues MER0063350 Swoo_3891
SK S41 non-peptidase homologue subfamily S41B non-peptidase homologues MER0288785
SK S41 non-peptidase homologue family S41 non-peptidase homologues MER0165055
SK S49 non-peptidase homologue subfamily S49A unassigned non-peptidase homologues MER0087236
SK S49 unassigned subfamily S49B unassigned peptidases MER0087159 Swoo_2299
ST S54 S54.016 GlpG peptidase (Escherichia-type) MER0099605 Swoo_0062
ST S54 S54.027 RhoII peptidase (Haloferax volcanii) and similar MER0075451 Swoo_0774
ST S54 unassigned family S54 unassigned peptidases MER1074900 Swoo_2553
U- U32 U32.002 collagenase (Helicobacter-type) MER0087278 Swoo_3512
U- U32 U32.003 collagenase (Salmonella-type) MER0087255 Swoo_0949
U- U32 U32.003 collagenase (Salmonella-type) MER0087192 Swoo_3218
U- U32 U32.A01 YhbV protein (Escherichia coli) MER0087276
U- U32 unassigned family U32 unassigned peptidases MER0087277 Swoo_3516

GENOME ANALYSIS: Comparison with 24 completely sequenced genomes from genus Shewanella
Family Comment
C56 lineage specific expansion (7 homologues)
M72 significant presence (1 homologues)
S1 lineage specific expansion (6 homologues)