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Sphingobium sp. SYK-6

Taxonomy
Taxonomy database identifier: 627192
Superkingdom Bacteria
Phylum Proteobacteria
Class Alphaproteobacteria
Order Rhodospirillales
Family Sphingomonadaceae
Genus Sphingobium
Species sp. SYK-6
Peptidase View peptidase sequences from Sphingobium sp. SYK-6
Count of known and putative peptidases: 105, non-peptidase homologues 27
Completely sequences genomes from subspecies and strains Protein coding genes

To show all strains with completely sequenced genomes, click here.

Clan Family MEROPS ID Peptidase or homologue (subtype) MERNUM Gene Link Locus Megabases
AA A32 unassigned family A32 unassigned peptidases MER0235452 SLG_09140
AA A32 unassigned family A32 unassigned peptidases MER0274131 SLG_21080
AC A8 unassigned family A8 unassigned peptidases MER1155678
AC A8 unassigned family A8 unassigned peptidases MER0274240 lspA SLG_05500
AD A24 unassigned subfamily A24A unassigned peptidases MER0263237 gspO SLG_13860
AD A24 unassigned subfamily A24B unassigned peptidases MER0673756 cpaA
CA C39 C39.005 colicin V processing peptidase MER0274228 SLG_10090
CA C96 non-peptidase homologue family C96 non-peptidase homologues MER0745878 SLG_26910
CL C82 unassigned subfamily C82A unassigned peptidases MER0274188 SLG_06180
CL C82 unassigned subfamily C82A unassigned peptidases MER0274180 SLG_15210
CO C40 C40.001 dipeptidyl-peptidase VI (bacteria) MER0274233 SLG_32860
GC G4 non-peptidase homologue family G4 non-peptidase homologues MER0298463 SLG_17280
MA M1 M01.005 alanyl aminopeptidase (bacterial-type) MER0274134 pepN SLG_38950
MA M1 unassigned family M1 unassigned peptidases MER0274153 SLG_01670
MA M1 unassigned family M1 unassigned peptidases MER0274191 SLG_12620
MA M2 unassigned family M2 unassigned peptidases MER0274197 SLG_23650
MA M3 unassigned subfamily M3A unassigned peptidases MER0274210 dcp SLG_05650
MA M13 unassigned family M13 unassigned peptidases MER0274190 SLG_30810
MA M41 M41.001 FtsH peptidase MER0274234 ftsH SLG_23540
MA M48 unassigned subfamily M48B unassigned peptidases MER0274172 htpX SLG_31540
MA M48 unassigned subfamily M48C unassigned peptidases MER0274226 SLG_01520
MA M48 unassigned subfamily M48C unassigned peptidases MER0274146 SLG_17820
MA M48 unassigned subfamily M48C unassigned peptidases MER0274171 SLG_36340
MA M56 unassigned family M56 unassigned peptidases MER0935158 SLG_16450
MA M61 unassigned family M61 unassigned peptidases MER0274189 SLG_36660
MC M14 non-peptidase homologue family M14 non-peptidase homologues MER0274184 SLG_11840
MC M14 unassigned subfamily M14D unassigned peptidases MER0274148 SLG_05300
ME M16 non-peptidase homologue subfamily M16B non-peptidase homologues MER0274215 SLG_02430
ME M16 non-peptidase homologue subfamily M16B non-peptidase homologues MER0274216 SLG_02430
ME M16 non-peptidase homologue family M16 non-peptidase homologues MER0274176 SLG_29360
ME M16 unassigned subfamily M16B unassigned peptidases MER0274175 SLG_29360
MF M17 unassigned family M17 unassigned peptidases MER0274213 pepA SLG_02420
MF M17 unassigned family M17 unassigned peptidases MER0274224 pepA SLG_14920
MF M17 unassigned family M17 unassigned peptidases MER0274198 SLG_32850
MG M24 M24.001 methionyl aminopeptidase 1 (Escherichia-type) MER0274158 map SLG_12050
MG M24 M24.009 aminopeptidase P1 MER0274231 SLG_00560
MG M24 non-peptidase homologue family M24 non-peptidase homologues MER0274138 SLG_18260
MG M24 unassigned subfamily M24A unassigned peptidases MER0274160 map SLG_05310
MG M24 unassigned subfamily M24B unassigned peptidases MER0274156 SLG_18150
MG M24 unassigned subfamily M24B unassigned peptidases MER0274212 SLG_24530
MH M20 non-peptidase homologue family M20 non-peptidase homologues MER0274177 SLG_33730
MH M20 unassigned subfamily M20A unassigned peptidases MER0274200 dapE SLG_00380
MH M20 unassigned subfamily M20A unassigned peptidases MER0302856
MH M20 unassigned family M20D unassigned peptidases MER0373556 SLG_03250
MH M20 unassigned family M20D unassigned peptidases MER0372988 SLG_22730
MH M20 unassigned family M20 unassigned peptidases MER0274223 SLG_09940
MH M20 unassigned family M20 unassigned peptidases MER0369727 SLG_11120
MH M20 unassigned family M20 unassigned peptidases MER0474909 SLG_11830
MH M20 unassigned family M20 unassigned peptidases MER0274193 SLG_16040
MH M28 unassigned subfamily M28D unassigned peptidases MER0274242 SLG_30860
MH M28 unassigned subfamily M28E unassigned peptidases MER0194719 SLG_14840
MH M28 unassigned family M28 unassigned peptidases MER0322917 SLG_29840
MJ M19 unassigned family M19 unassigned peptidases MER0274154 SLG_00630
MJ M19 unassigned family M19 unassigned peptidases MER0341650 SLG_03940
MJ M38 M38.001 isoaspartyl dipeptidase (metallo-type) MER0863726 SLG_18290
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0862137 SLG_22480
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0861461 SLG_03950
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0867884 SLG_31090
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0864037 SLG_31130
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0867388 SLG_13510
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0866065 SLG_14240
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0870382 SLG_18240
MJ M38 unassigned family M38 unassigned peptidases MER0274183 SLG_36270
MM M50 unassigned subfamily M50A unassigned peptidases MER0895213 SLG_15500
MO M23 M23.009 Mername-AA292 peptidase MER0274236 SLG_35980
MO M23 non-peptidase homologue subfamily M23B non-peptidase homologues MER0274247 SLG_31640
MO M23 unassigned subfamily M23B unassigned peptidases MER0274168 SLG_02340
MO M23 unassigned subfamily M23B unassigned peptidases MER0274217 SLG_34050
MO M23 unassigned subfamily M23B unassigned peptidases MER0274207 SLG_38290
MP M67 unassigned subfamily M67B unassigned peptidases MER0274186 SLG_04030
MU M103 M103.001 TldD peptidase (Escherichia coli) MER0274199 SLG_38470
MU M103 M103.UNW family M103 non-peptidase homologues MER0274133 SLG_31830
NB N6 N06.A01 FlhB protein (Escherichia coli) MER0274219 flhB SLG_02800
PA S1 unassigned subfamily S1A unassigned peptidases MER0488425 SLG_37450
PA S1 unassigned subfamily S1C unassigned peptidases MER0274194 SLG_26700
PA S1 unassigned subfamily S1C unassigned peptidases MER0274135 SLG_37310
PA S1 unassigned subfamily S1C unassigned peptidases MER0274149 SLG_38790
PB C44 C44.001 amidophosphoribosyltransferase precursor MER0274206 purF SLG_16110
PB C44 C44.003 glutamate synthase (NADPH) large chain MER0274161 gltB SLG_29300
PB C44 non-peptidase homologue family C44 non-peptidase homologues MER0274245 glmS SLG_10530
PB C44 unassigned family C44 unassigned peptidases MER0458419 asnB SLG_25360
PB T1 T01.006 HslV component of HslUV peptidase MER0274246 hslV SLG_16000
PB T2 unassigned family T2 unassigned peptidases MER0274235 SLG_25580
PB T3 T03.001 gamma-glutamyltransferase 1 (bacterial-type) MER0274227 ggt SLG_01570
PB T3 T03.025 oxamate amidohydrolase proenzyme (Klebsiella pneumonia) MER0274243 ggt SLG_32030
PB T3 unassigned family T3 unassigned peptidases MER0274208 ggt SLG_18180
PC C26 C26.955 aminodeoxychorismate synthase, subunit II MER0274173 trpG SLG_25880
PC C26 C26.957 GMP synthase MER0274152 guaA SLG_35340
PC C26 C26.964 CTP synthetase MER0451185 pyrG SLG_22840
PC C26 unassigned family C26 unassigned peptidases MER0274157 hisH SLG_02550
PC C26 unassigned family C26 unassigned peptidases MER0274192 carA SLG_24110
PE T5 T05.001 ornithine acetyltransferase precursor MER0274205 argJ SLG_14680
SB S8 unassigned subfamily S8A unassigned peptidases MER0274244 SLG_19580
SB S8 unassigned subfamily S8A unassigned peptidases MER0274169 SLG_27410
SB S8 unassigned subfamily S8A unassigned peptidases MER0274232 SLG_36820
SC S9 S09.010 oligopeptidase B MER0274220 ptrB SLG_00590
SC S9 S09.023 D230019K24Rik peptidase (Mus musculus) MER0274145 SLG_01540
SC S9 S09.940 S-formylglutathione hydrolase FrmB (Escherichi coli) MER0274170 SLG_09820
SC S9 S09.940 S-formylglutathione hydrolase FrmB (Escherichi coli) MER0274222 SLG_18850
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0274195 SLG_07700
SC S9 unassigned subfamily S9A unassigned peptidases MER0274165 SLG_16500
SC S9 unassigned subfamily S9A unassigned peptidases MER0274155 SLG_35360
SC S9 unassigned subfamily S9B unassigned peptidases MER0274163 SLG_29830 SLG_29830
SC S9 unassigned subfamily S9B unassigned peptidases MER0274164 SLG_13990
SC S9 unassigned subfamily S9C unassigned peptidases MER0274230 SLG_26890
SC S9 unassigned family S9 unassigned peptidases MER0274221 SLG_13360 SLG_13360
SC S9 unassigned family S9 unassigned peptidases MER0274150 SLG_01900
SC S9 unassigned family S9 unassigned peptidases MER0274196 SLG_35240
SC S10 unassigned family S10 unassigned peptidases MER0274159 SLG_18230
SC S10 unassigned family S10 unassigned peptidases MER0274179 SLG_33810
SC S15 non-peptidase homologue family S15 non-peptidase homologues MER1022633 SLG_34840
SC S15 non-peptidase homologue family S15 non-peptidase homologues MER1022634 SLG_34840
SC S15 unassigned family S15 unassigned peptidases MER0489597 SLG_09340
SC S33 unassigned family S33 unassigned peptidases MER0274238 SLG_10660
SC S33 unassigned family S33 unassigned peptidases MER0274185 SLG_27270
SC S33 unassigned family S33 unassigned peptidases MER0274147 SLG_28530
SC S33 unassigned family S33 unassigned peptidases MER0381086 SLG_35840
SE S11 unassigned family S11 unassigned peptidases MER0274248 SLG_01940
SE S11 unassigned family S11 unassigned peptidases MER0274229 dac SLG_20250
SE S11 unassigned family S11 unassigned peptidases MER0274241 SLG_34410
SE S12 unassigned family S12 unassigned peptidases MER0274151 SLG_02730
SE S12 unassigned family S12 unassigned peptidases MER0274166 SLG_04840
SE S12 unassigned family S12 unassigned peptidases MER0274239 SLG_13640
SE S12 unassigned family S12 unassigned peptidases MER0274187 SLG_20070
SE S12 unassigned family S12 unassigned peptidases MER0274178 SLG_20120
SE S12 unassigned family S12 unassigned peptidases MER0274201 SLG_21590
SE S12 unassigned family S12 unassigned peptidases MER0274204 SLG_23810
SF S24 S24.001 repressor LexA MER0274167 lexA SLG_25230
SF S24 unassigned family S24 unassigned peptidases MER0274137 SLG_36470
SF S26 S26.001 signal peptidase I MER0333407 SLG_08320
SF S26 S26.001 signal peptidase I MER0274218 SLG_24780
SF S26 S26.014 TraF peptidase MER0274203 SLG_26150
SF S26 S26.014 TraF peptidase MER0274237 SLG_30470
SF S26 unassigned subfamily S26C unassigned peptidases MER0274181 SLG_19940
SH S78 S78.001 prohead peptidase (bacteriophage HK97) MER0274202 SLG_33210
SJ S16 S16.001 Lon-A peptidase MER0274211 lon SLG_13440
SJ S16 S16.A04 DNA repair protein RadA (Escherichia coli) MER0274174 radA SLG_17710
SJ S16 unassigned family S16 unassigned peptidases MER0274132 lon SLG_32040
SK S14 S14.001 peptidase Clp (type 1) MER0274162 clpP SLG_20500
SK S41 unassigned subfamily S41A unassigned peptidases MER0274136 ctpA SLG_31650
SK S49 unassigned subfamily S49B unassigned peptidases MER0274182 sppA SLG_00800
ST S54 unassigned family S54 unassigned peptidases MER0316094 SLG_24080
U- U69 unassigned family U69 unassigned peptidases MER0274139 SLG_04220
U- U69 unassigned family U69 unassigned peptidases MER0274140 SLG_04220
U- U69 unassigned family U69 unassigned peptidases MER0274141 SLG_04220
U- U69 unassigned family U69 unassigned peptidases MER0274142 SLG_04220
U- U69 unassigned family U69 unassigned peptidases MER0274143 SLG_04220
U- U69 unassigned family U69 unassigned peptidases MER0274144 SLG_04220

GENOME ANALYSIS: Comparison with 18 completely sequenced genomes from genus Sphingobium
Family Comment
A24 significant decrease in homologues (2 homologues)
C26 significant decrease in homologues (5 homologues)
C39 significant presence (1 homologues)
C82 significant decrease in homologues (2 homologues)
C96 significant decrease in homologues (1 homologues)
G4 significant decrease in homologues (1 homologues)
M2 significant presence (1 homologues)
M16 significant decrease in homologues (4 homologues)
M23 significant decrease in homologues (5 homologues)
M24 lineage specific expansion (6 homologues)
M28 significant decrease in homologues (3 homologues)
S1 lineage specific expansion (4 homologues)
S10 significant presence (2 homologues)
S12 lineage specific expansion (7 homologues)
S26 significant decrease in homologues (5 homologues)
T2 significant presence (1 homologues)
U69 significant presence (6 homologues)

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