Paenibacillus sp. JDR-2

Taxonomy
Taxonomy database identifier: 324057
Superkingdom Bacteria
Phylum Firmicutes
Class Bacilli
Order Bacillales
Family Paenibacillaceae
Genus Paenibacillus
Species sp. JDR-2
Peptidase View peptidase sequences from Paenibacillus sp. JDR-2
Count of known and putative peptidases: 153, non-peptidase homologues 66
Completely sequences genomes from subspecies and strains Protein coding genes

To show all strains with completely sequenced genomes, click here.

Clan Family MEROPS ID Peptidase or homologue (subtype) MERNUM Gene Link Locus Megabases
A- A36 unassigned family A36 unassigned peptidases MER0193898 Pjdr2_3883
AC A8 unassigned family A8 unassigned peptidases MER0193897 lspA Pjdr2_3870
AD A24 A24.019 ComC peptidase MER0120485 Pjdr2_2102
AD A24 unassigned subfamily A24A unassigned peptidases MER0193811 Pjdr2_1247
AE A25 A25.001 gpr peptidase MER0120416 gpr Pjdr2_2199
CL C60 unassigned family C60 unassigned peptidases MER0194140 Pjdr2_6177
CL C82 C82.003 ykuD transpeptidase MER0193878 Pjdr2_3504
CL C82 unassigned subfamily C82A unassigned peptidases MER0193801 Pjdr2_0918
CO C40 C40.006 PgpA peptidase MER0193891 Pjdr2_3771
CO C40 C40.006 PgpA peptidase MER0194109 Pjdr2_5394
CO C40 C40.006 PgpA peptidase MER0179054 Pjdr2_0116
CO C40 unassigned family C40 unassigned peptidases MER0164095 Pjdr2_2050
CR C108 C108.001 Prp peptidase (Staphylococcus aureus) MER0146570
G- G5 unassigned family G5 unassigned peptidases MER0193803 Pjdr2_0972
G- G5 unassigned family G5 unassigned peptidases MER0193845 Pjdr2_2373
MA M1 unassigned family M1 unassigned peptidases MER0193774 Pjdr2_0118
MA M3 M03.010 Pz-peptidase A MER0193824 Pjdr2_1511
MA M3 M03.A08 BSSC8_09230 g.p. (Bacillus subtilis) MER0122829 Pjdr2_1212
MA M3 unassigned subfamily M3B unassigned peptidases MER1189419
MA M3 unassigned subfamily M3B unassigned peptidases MER0179249 Pjdr2_2115
MA M32 M32.006 ypwA peptidase MER0144315 Pjdr2_2597
MA M41 M41.009 FtsH-2 peptidase MER0178728 ftsH Pjdr2_0063
MA M41 unassigned family M41 unassigned peptidases MER0177639 Pjdr2_0326
MA M41 unassigned family M41 unassigned peptidases MER0179286 Pjdr2_2454
MA M56 unassigned family M56 unassigned peptidases MER0163909 Pjdr2_5601
MA M56 unassigned family M56 unassigned peptidases MER0117585 Pjdr2_3530
MC M14 M14.008 gamma-D-glutamyl-(L)-meso-diaminopimelate peptidase I MER0138990 Pjdr2_2087
MD M15 M15.010 vanY D-Ala-D-Ala carboxypeptidase MER0311654 Pjdr2_6024
MD M15 M15.024 DacB metallopeptidase (Streptococcus pneumoniae) MER0142535 Pjdr2_5893
MD M15 M15.A05 ycdD g.p. (Bacillus subtilis) MER0138297 Pjdr2_5381
MD M15 unassigned subfamily M15B unassigned peptidases MER1238197
MD M15 unassigned subfamily M15B unassigned peptidases MER0118550 Pjdr2_5611
ME M16 M16.A15 BSSC8_26020 g.p. (Bacillus subtilis) MER0193872 Pjdr2_3399
ME M16 M16.A20 ymfH g.p. (Bacillus subtilis) MER0179364 Pjdr2_3387
ME M16 non-peptidase homologue subfamily M16B non-peptidase homologues MER0179409 Pjdr2_3388
ME M16 non-peptidase homologue family M16 non-peptidase homologues MER0179408 Pjdr2_3388
MF M17 M17.010 leucyl aminopeptidase (Bacillus-type) MER0138822 pepA Pjdr2_1317
MG M24 M24.008 hyperthermophile prolidase MER0193844 Pjdr2_2287
MG M24 non-peptidase homologue subfamily M24B non-peptidase homologues MER0193807 Pjdr2_1085
MG M24 unassigned subfamily M24A unassigned peptidases MER0122956 map Pjdr2_5941
MG M24 unassigned subfamily M24A unassigned peptidases MER0178245 Pjdr2_3243
MG M24 unassigned subfamily M24A unassigned peptidases MER0122343 map Pjdr2_5658
MG M24 unassigned subfamily M24B unassigned peptidases MER0125292 Pjdr2_5340
MH M20 M20.003 peptidase T MER0141616 pepT Pjdr2_5971
MH M20 M20.015 YxeP putative peptidase MER0118924 Pjdr2_5227
MH M20 M20.018 BC4143 protein MER0117586 Pjdr2_2325
MH M20 M20.A27 ykuR g.p. (Bacillus subtilis) MER0193896 Pjdr2_3867
MH M20 non-peptidase homologue family M20 non-peptidase homologues MER0194097 Pjdr2_4691
MH M20 unassigned subfamily M20A unassigned peptidases MER0193828 Pjdr2_1816
MH M20 unassigned family M20D unassigned peptidases MER0119976 Pjdr2_5224
MH M20 unassigned family M20D unassigned peptidases MER0177608 Pjdr2_1512
MH M20 unassigned family M20D unassigned peptidases MER0178527 Pjdr2_3780
MH M20 unassigned family M20D unassigned peptidases MER0178976 Pjdr2_2990
MH M20 unassigned subfamily M20F unassigned peptidases MER0194098 Pjdr2_4715
MH M20 unassigned family M20 unassigned peptidases MER0193864
MH M42 unassigned family M42 unassigned peptidases MER0178667 Pjdr2_2727
MJ M19 non-peptidase homologue family M19 non-peptidase homologues MER0189224 Pjdr2_0604
MJ M19 unassigned family M19 unassigned peptidases MER0117297 Pjdr2_3374
MJ M38 M38.982 urease MER0194084 ureC Pjdr2_4326
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0193808 Pjdr2_1120
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0193831 ade Pjdr2_1876
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0193846 mtaD1 Pjdr2_2451
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0193862 Pjdr2_3254
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0193865 allB Pjdr2_3313
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0193866 Pjdr2_3326
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0193887 Pjdr2_3617
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0193895 pyrC Pjdr2_3863
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0194138 Pjdr2_6134
MJ M38 unassigned family M38 unassigned peptidases MER0193802 Pjdr2_0939
MJ M38 unassigned family M38 unassigned peptidases MER0194091 Pjdr2_4466
MJ M38 unassigned family M38 unassigned peptidases MER0194093 Pjdr2_4547
MJ M38 unassigned family M38 unassigned peptidases MER0194096 Pjdr2_4687
MM M50 M50.A05 ywhC g.p. (Bacillus subtilis) MER0193841 Pjdr2_2212
MM M50 unassigned subfamily M50B unassigned peptidases MER0193873 Pjdr2_3414
MM M50 unassigned subfamily M50B unassigned peptidases MER0143676 Pjdr2_4415
MO M23 M23.009 Mername-AA292 peptidase MER0178148 Pjdr2_5732
MO M23 M23.010 LytH peptidase MER0125212 Pjdr2_1202
MO M23 non-peptidase homologue subfamily M23B non-peptidase homologues MER0194087 Pjdr2_4416
MO M23 unassigned subfamily M23B unassigned peptidases MER0194123 Pjdr2_5795
MO M23 unassigned subfamily M23B unassigned peptidases MER0189675 Pjdr2_6256
MO M23 unassigned subfamily M23B unassigned peptidases MER0177568
MP M67 unassigned subfamily M67B unassigned peptidases MER0193838 Pjdr2_2144
MQ M29 M29.002 aminopeptidase II (Bacillus-type) MER0118621 Pjdr2_5341
MQ M29 M29.004 PepS aminopeptidase MER0193804 Pjdr2_0985
MQ M29 unassigned family M29 unassigned peptidases MER0123391 Pjdr2_3787
NB N6 N06.A01 FlhB protein (Escherichia coli) MER0326843
PA S1 unassigned subfamily S1C unassigned peptidases MER0193792 Pjdr2_0798
PA S1 unassigned subfamily S1C unassigned peptidases MER0193812 Pjdr2_1276
PA S1 unassigned subfamily S1C unassigned peptidases MER0194101 Pjdr2_4783
PA S1 unassigned subfamily S1C unassigned peptidases MER0194120 Pjdr2_5635
PA S1 unassigned subfamily S1C unassigned peptidases MER0194122 Pjdr2_5724
PA S1 unassigned subfamily S1C unassigned peptidases MER0194141 Pjdr2_6249
PA S55 S55.001 SpoIVB peptidase MER0125579 Pjdr2_2317
PB C44 C44.001 amidophosphoribosyltransferase precursor MER0117434 Pjdr2_0867
PB C44 C44.003 glutamate synthase (NADPH) large chain MER0194104 Pjdr2_4998
PB C44 non-peptidase homologue family C44 non-peptidase homologues MER0163978 Pjdr2_5628
PB C44 unassigned family C44 unassigned peptidases MER0194090 Pjdr2_4456
PB T1 T01.007 CodW component of CodWX peptidase MER0126757 hslV Pjdr2_3463
PB T3 T03.025 oxamate amidohydrolase proenzyme (Klebsiella pneumonia) MER0119503 Pjdr2_5903
PC C26 C26.952 dihydro-orotase (N-terminal unit) (Homo sapiens-type) MER0193894 carA Pjdr2_3862
PC C26 C26.955 aminodeoxychorismate synthase, subunit II MER0193772 Pjdr2_0076
PC C26 C26.957 GMP synthase MER0193795 guaA Pjdr2_0836
PC C26 C26.964 CTP synthetase MER0193775 pyrG Pjdr2_0137
PC C26 C26.965 imidazole glycerol phosphate synthase subunit HisH MER0193776 hisH Pjdr2_0163
PC C26 C26.A32 imidazoleglycerol-phosphate synthase (Pyrococcus furiosus) MER0193773 pdxT Pjdr2_0092
PC C26 non-peptidase homologue family C26 non-peptidase homologues MER0193889 cobQ Pjdr2_3625
PC C26 unassigned family C26 unassigned peptidases MER0193881 Pjdr2_3549
PC C56 C56.001 PfpI peptidase MER0142979 Pjdr2_3803
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0193796 purQ Pjdr2_0865
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0194077 Pjdr2_3982
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0177752 Pjdr2_0637
PC C56 unassigned family C56 unassigned peptidases MER0144396 Pjdr2_1332
PE T5 T05.002 ArgJ protein (archea) MER0117298 argJ Pjdr2_5742
SB S8 S08.149 CDF peptidase MER0179019 Pjdr2_0135
SB S8 non-peptidase homologue subfamily S8A non-peptidase homologues MER1282211
SB S8 unassigned subfamily S8A unassigned peptidases MER0136679 Pjdr2_2330
SB S8 unassigned subfamily S8A unassigned peptidases MER1281734
SB S8 unassigned subfamily S8A unassigned peptidases MER0178211 Pjdr2_5802
SB S8 unassigned subfamily S8A unassigned peptidases MER0144714 Pjdr2_2248
SC S9 S09.986 carboxylesterase-related protein MER0193858 Pjdr2_2959
SC S9 S09.993 hormone-sensitive lipase MER0193783 Pjdr2_0552
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0193786 Pjdr2_0628
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0193849 Pjdr2_2649
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0193857 Pjdr2_2955
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0194119 Pjdr2_5584
SC S9 unassigned subfamily S9C unassigned peptidases MER0193827 Pjdr2_1715
SC S9 unassigned subfamily S9C unassigned peptidases MER0193843 Pjdr2_2253
SC S9 unassigned family S9 unassigned peptidases MER0193794 Pjdr2_0809
SC S9 unassigned family S9 unassigned peptidases MER0193797 Pjdr2_0873
SC S9 unassigned family S9 unassigned peptidases MER0193836 Pjdr2_1998
SC S9 unassigned family S9 unassigned peptidases MER0193839 Pjdr2_2156
SC S9 unassigned family S9 unassigned peptidases MER0193859 Pjdr2_2962
SC S9 unassigned family S9 unassigned peptidases MER0194080 Pjdr2_4273
SC S9 unassigned family S9 unassigned peptidases MER0194081 Pjdr2_4290
SC S9 unassigned family S9 unassigned peptidases MER0194105 Pjdr2_5138
SC S9 unassigned family S9 unassigned peptidases MER0194107 Pjdr2_5261
SC S9 unassigned family S9 unassigned peptidases MER0194110 Pjdr2_5395
SC S9 unassigned family S9 unassigned peptidases MER0194113 Pjdr2_5462
SC S9 unassigned family S9 unassigned peptidases MER0194130 Pjdr2_5973
SC S9 unassigned family S9 unassigned peptidases MER0194134 Pjdr2_6081
SC S9 unassigned family S9 unassigned peptidases MER0213847 Pjdr2_6007
SC S15 unassigned family S15 unassigned peptidases MER0193784 Pjdr2_0603
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0193822 Pjdr2_1472
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0193834 Pjdr2_1922
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0193840 Pjdr2_2181
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0193885 Pjdr2_3603
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0194114 Pjdr2_5526
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0125127 Pjdr2_1756
SC S33 unassigned family S33 unassigned peptidases MER0193780 Pjdr2_0372
SC S33 unassigned family S33 unassigned peptidases MER0193781 Pjdr2_0379
SC S33 unassigned family S33 unassigned peptidases MER0193791 Pjdr2_0708
SC S33 unassigned family S33 unassigned peptidases MER0193805 Pjdr2_1013
SC S33 unassigned family S33 unassigned peptidases MER0193821 Pjdr2_1465
SC S33 unassigned family S33 unassigned peptidases MER0193823 Pjdr2_1474
SC S33 unassigned family S33 unassigned peptidases MER0193830 Pjdr2_1870
SC S33 unassigned family S33 unassigned peptidases MER0193832 Pjdr2_1902
SC S33 unassigned family S33 unassigned peptidases MER0194103 Pjdr2_4934
SC S33 unassigned family S33 unassigned peptidases MER0194106 Pjdr2_5149
SC S33 unassigned family S33 unassigned peptidases MER0194112 Pjdr2_5436
SE S11 S11.001 D-Ala-D-Ala carboxypeptidase A MER0144713 Pjdr2_0090
SE S11 S11.004 K15-type DD-transpeptidase MER0136891 Pjdr2_2360
SE S11 S11.005 D-Ala-D-Ala carboxypeptidase DacF MER0138821 Pjdr2_2338
SE S11 unassigned family S11 unassigned peptidases MER0126094 Pjdr2_3299
SE S12 S12.950 esterase EstB MER0193852 Pjdr2_2759
SE S12 S12.950 esterase EstB MER0194079 Pjdr2_4173
SE S12 S12.950 esterase EstB MER0194092 Pjdr2_4521
SE S12 S12.950 esterase EstB MER0164143 Pjdr2_1656
SE S12 S12.950 esterase EstB MER0122828 Pjdr2_3569
SE S12 S12.A23 GYO_0385 g.p. (Bacillus subtilis) MER0193867 Pjdr2_3329
SE S12 S12.A28 pksF (Bacillus subtilis) MER0178633 Pjdr2_2758
SE S12 unassigned family S12 unassigned peptidases MER0194135 Pjdr2_6119
SE S12 unassigned family S12 unassigned peptidases MER0119231 Pjdr2_2893
SE S12 unassigned family S12 unassigned peptidases MER0177381 Pjdr2_5426
SF S24 S24.001 repressor LexA MER0117583 lexA Pjdr2_2621
SF S24 S24.001 repressor LexA MER0138107 Pjdr2_1579
SF S26 unassigned subfamily S26A unassigned peptidases MER0193793 Pjdr2_0804
SF S26 unassigned subfamily S26A unassigned peptidases MER0193868 Pjdr2_3362
SF S26 unassigned subfamily S26A unassigned peptidases MER0142534 Pjdr2_3476
SH S78 unassigned family S78 unassigned peptidases MER0193826 Pjdr2_1542
SJ S16 S16.001 Lon-A peptidase MER0139971 lon Pjdr2_4445
SJ S16 S16.005 Lon-B peptidase MER0194088 Pjdr2_4446
SJ S16 S16.012 SepM peptidase (Streptococcus mutans) MER0193837 Pjdr2_2090
SJ S16 S16.012 SepM peptidase (Streptococcus mutans) MER0193877 Pjdr2_3499
SJ S16 S16.012 SepM peptidase (Streptococcus mutans) MER0194078 Pjdr2_4124
SJ S16 S16.A04 DNA repair protein RadA (Escherichia coli) MER0194121 Pjdr2_5713
SJ S16 non-peptidase homologue family S16 non-peptidase homologues MER0193874 Pjdr2_3469
SK S14 S14.001 peptidase Clp (type 1) MER0194089 clpP3 Pjdr2_4449
SK S14 S14.001 peptidase Clp (type 1) MER0117896 clpP2 Pjdr2_3042
SK S14 S14.001 peptidase Clp (type 1) MER0117584 clpP1 Pjdr2_0175
SK S14 unassigned family S14 unassigned peptidases MER0193871 Pjdr2_3392
SK S41 S41.007 ctpB peptidase MER0178108 Pjdr2_5731
SK S41 unassigned subfamily S41A unassigned peptidases MER0120329 Pjdr2_1264
SK S49 unassigned subfamily S49B unassigned peptidases MER0193842 Pjdr2_2226
SS S66 unassigned family S66 unassigned peptidases MER0193869 Pjdr2_3367
ST S54 S54.A18 ydcA g.p. (Bacillus subtilis) MER0123916 Pjdr2_2137
U- U32 unassigned family U32 unassigned peptidases MER0178071 Pjdr2_5722
U- U32 unassigned family U32 unassigned peptidases MER0178072 Pjdr2_5722
U- U57 U57.001 yabG protein (Bacillus-type) MER0122635 Pjdr2_0028

GENOME ANALYSIS: Comparison with 54 completely sequenced genomes from genus Paenibacillus
Family Comment
C60 significant presence (1 homologues)
G5 significant presence (2 homologues)
M38 lineage specific expansion (14 homologues)
M67 significant presence (1 homologues)
S15 significant presence (1 homologues)
S33 lineage specific expansion (17 homologues)
S49 significant presence (1 homologues)
S78 significant presence (1 homologues)
T3 significant presence (1 homologues)