Structure for peptidase S08.039: PCSK9 peptidase

Summary Gene structure Alignment Tree Sequences Sequence features Distribution Structure Literature Substrates Pharma

 

PDB Organism Resolution Comment
2P4E_P Homo sapiens 1.98 Å mature
The catalytic residues are shown in ball-and-stick representation: Asp186 in pink, His226 in purple, Asn317 in dark pink and Ser386 in orange. The propeptide is shown in grey ribbon representation.
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TERTIARY STRUCTURE DATA
Comment Resolution PDB PDBe SCOP CATH PDBSum Proteopedia Reference
Homo sapiens
mature  peptidase 1.98 Å 2P4E 2P4E 2P4E 2P4E 2P4E 2P4E Cunningham et al., 2007
mature  peptidase 2.30 Å 2PMW 2PMW 2PMW 2PMW 2PMW 2PMW Piper et al., 2007
the crystal structure of pcsk9 at 1.9 angstroms resolution reveals structural homology to resistin within the c- terminal domain 1.90 Å 2QTW 2QTW 2QTW 2QTW 2QTW 2QTW Hampton et al., 2007
wt pcsk9-deltac bound to wt egf-a of ldlr 2.40 Å 2W2M 2W2M 2W2M 2W2M 2W2M 2W2M Bottomley et al., 2009
wt pcsk9-deltac bound to egf-a h306y mutant of ldlr 2.30 Å 2W2N 2W2N 2W2N 2W2N 2W2N 2W2N Bottomley et al., 2009
pcsk9-deltac d374y mutant bound to wt egf-a of ldlr 2.62 Å 2W2O 2W2O 2W2O 2W2O 2W2O 2W2O Bottomley et al., 2009
pcsk9-deltac d374a mutant bound to wt egf-a of ldlr 2.62 Å 2W2P 2W2P 2W2P 2W2P 2W2P 2W2P Bottomley et al., 2009
pcsk9-deltac d374h mutant bound to wt egf-a of ldlr 2.33 Å 2W2Q 2W2Q 2W2Q 2W2Q 2W2Q 2W2Q Bottomley et al., 2009
pcsk9:egf-a complex 2.41 Å 3BPS 3BPS 3BPS 3BPS 3BPS 3BPS Kwon et al., 2008
pcsk9:egfa(h306y) 2.70 Å 3GCW 3GCW 3GCW 3GCW 3GCW 3GCW
pcsk9:egfa (ph 7.4) 2.70 Å 3GCX 3GCX 3GCX 3GCX 3GCX 3GCX
complex with FAB from ldlr competitive antibody 2.30 Å 3H42 3H42 3H42 3H42 3H42 3H42 Chan et al., 2009