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information

Novosphingobium sp. PP1Y

Taxonomy
Taxonomy database identifier: 702113
Superkingdom Bacteria
Phylum Proteobacteria
Class Alphaproteobacteria
Order Rhodospirillales
Family Sphingomonadaceae
Genus Novosphingobium
Species sp. PP1Y
Peptidase View peptidase sequences from Novosphingobium sp. PP1Y
Count of known and putative peptidases: 98, non-peptidase homologues 36
Completely sequences genomes from subspecies and strains Protein coding genes

To show all strains with completely sequenced genomes, click here.

Clan Family MEROPS ID Peptidase or homologue (subtype) MERNUM Gene Link Locus Megabases
AA A28 unassigned subfamily A28B unassigned peptidases MER0427625 PP1Y_AT12187
AA A32 unassigned family A32 unassigned peptidases MER0233592 PP1Y_AT3916
AA A32 unassigned family A32 unassigned peptidases MER0234386 PP1Y_AT28131
AC A8 unassigned family A8 unassigned peptidases MER0248173 lspA PP1Y_AT660
AD A24 unassigned subfamily A24B unassigned peptidases MER0617421 PP1Y_AT26594
CA C93 unassigned family C93 unassigned peptidases MER0392373 PP1Y_AT26734
CA C96 C96.001 McjB peptidase MER0745821 PP1Y_Lpl389
CA C96 C96.001 McjB peptidase MER0745868 PP1Y_AT16324
CL C82 C82.A01 LdtF protein (Escherichia coli) MER0461586 PP1Y_AT19536
CL C82 unassigned subfamily C82A unassigned peptidases MER0250118 PP1Y_AT6048
CL C82 unassigned subfamily C82A unassigned peptidases MER0248372 PP1Y_AT28998
GC G4 non-peptidase homologue family G4 non-peptidase homologues MER0301660 PP1Y_AT25233
GC G4 non-peptidase homologue family G4 non-peptidase homologues MER0298863 PP1Y_AT25241
MA M1 M01.005 alanyl aminopeptidase (bacterial-type) MER0248814 PP1Y_AT1252
MA M1 unassigned family M1 unassigned peptidases MER0248073 PP1Y_AT34869
MA M2 unassigned family M2 unassigned peptidases MER0248298 PP1Y_AT21138
MA M3 unassigned subfamily M3A unassigned peptidases MER0248874 PP1Y_AT36193
MA M13 unassigned family M13 unassigned peptidases MER0249578 PP1Y_AT9009
MA M13 unassigned family M13 unassigned peptidases MER0248373 PP1Y_AT29018
MA M41 M41.001 FtsH peptidase MER0247980 ftsH1 PP1Y_AT13810
MA M41 M41.001 FtsH peptidase MER0249293 ftsH PP1Y_AT23747
MA M41 unassigned family M41 unassigned peptidases MER0249297 ftsH PP1Y_AT23800
MA M48 unassigned subfamily M48B unassigned peptidases MER0247537 htpX PP1Y_AT20235
MA M48 unassigned subfamily M48C unassigned peptidases MER0249005 PP1Y_AT29583
MA M48 unassigned subfamily M48C unassigned peptidases MER0249635 PP1Y_AT37085
MA M48 unassigned family M48 unassigned peptidases MER0248812 PP1Y_AT1241
MA M56 unassigned family M56 unassigned peptidases MER0249809 PP1Y_AT30648
MA M61 M61.001 glycyl aminopeptidase MER0249175 PP1Y_AT4304
MA M78 unassigned family M78 unassigned peptidases MER0909969 PP1Y_AT3086
MA M78 unassigned family M78 unassigned peptidases MER0910301 PP1Y_AT32520
MC M14 unassigned subfamily M14D unassigned peptidases MER0249672 PP1Y_AT19404
ME M16 non-peptidase homologue subfamily M16B non-peptidase homologues MER0249590 PP1Y_AT19018
ME M16 non-peptidase homologue subfamily M16B non-peptidase homologues MER0249639 PP1Y_AT19311
ME M16 non-peptidase homologue family M16 non-peptidase homologues MER0249589 PP1Y_AT19018
ME M16 non-peptidase homologue family M16 non-peptidase homologues MER0249640 PP1Y_AT19311
ME M16 unassigned subfamily M16B unassigned peptidases MER0247635 PP1Y_AT20635
MF M17 unassigned family M17 unassigned peptidases MER0250032 PP1Y_AT5573
MF M17 unassigned family M17 unassigned peptidases MER0247591 pepA PP1Y_AT20460
MG M24 M24.001 methionyl aminopeptidase 1 (Escherichia-type) MER0250033 map PP1Y_AT5594
MG M24 M24.009 aminopeptidase P1 MER0248166 PP1Y_AT35312
MG M24 non-peptidase homologue family M24 non-peptidase homologues MER0249796 PP1Y_AT19968
MG M24 non-peptidase homologue family M24 non-peptidase homologues MER0249798 PP1Y_AT20020
MG M24 non-peptidase homologue family M24 non-peptidase homologues MER0248565 PP1Y_Mpl5403
MH M20 non-peptidase homologue subfamily M20D non-peptidase homologues MER0372751 PP1Y_AT21916
MH M20 non-peptidase homologue family M20 non-peptidase homologues MER0249385 PP1Y_Mpl6605
MH M20 unassigned subfamily M20A unassigned peptidases MER0249286 dapE PP1Y_AT33926
MH M20 unassigned family M20D unassigned peptidases MER0248788 PP1Y_AT1183
MH M20 unassigned family M20D unassigned peptidases MER0373669 PP1Y_Mpl3883
MH M20 unassigned family M20D unassigned peptidases MER0247853 PP1Y_Mpl4162
MH M20 unassigned family M20 unassigned peptidases MER0248002 PP1Y_AT6864
MH M28 non-peptidase homologue subfamily M28E non-peptidase homologues MER0206321 PP1Y_AT25710
MH M28 unassigned subfamily M28A unassigned peptidases MER0207795 PP1Y_AT17407
MH M28 unassigned subfamily M28D unassigned peptidases MER0250269 PP1Y_AT27544
MH M28 unassigned subfamily M28E unassigned peptidases MER0322984 PP1Y_AT30611
MJ M19 unassigned family M19 unassigned peptidases MER0248848 PP1Y_AT8464
MJ M19 unassigned family M19 unassigned peptidases MER0341668 PP1Y_AT12479
MJ M38 M38.982 urease MER0248941 ureC PP1Y_Mpl10631
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0868168 PP1Y_Mpl1439
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0866193 PP1Y_Mpl7385
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0868675 PP1Y_Mpl9125
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0865896 PP1Y_AT12549
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0249347 PP1Y_AT4931
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0248829 PP1Y_Mpl10221
MM M50 non-peptidase homologue subfamily M50B non-peptidase homologues MER0894220 PP1Y_AT11290
MM M50 unassigned family M50 unassigned peptidases MER0896115 PP1Y_AT14164
MO M23 M23.009 Mername-AA292 peptidase MER0248076 PP1Y_AT240
MO M23 M23.009 Mername-AA292 peptidase MER0248110 PP1Y_AT381
MO M23 M23.009 Mername-AA292 peptidase MER0248951 PP1Y_AT1882
MO M23 M23.009 Mername-AA292 peptidase MER0249570 PP1Y_AT26584
MO M23 non-peptidase homologue subfamily M23B non-peptidase homologues MER0248152 PP1Y_AT625
MO M23 non-peptidase homologue subfamily M23B non-peptidase homologues MER0248867 PP1Y_AT18435
MO M23 unassigned subfamily M23B unassigned peptidases MER0249612 PP1Y_AT37006
MP M67 unassigned subfamily M67B unassigned peptidases MER0248932 PP1Y_AT18737
MU M103 M103.001 TldD peptidase (Escherichia coli) MER0247631 PP1Y_AT2262
MU M103 M103.UNW family M103 non-peptidase homologues MER0248031 PP1Y_AT34640
NB N6 non-peptidase homologue family N6 non-lyase homologues MER0249434 PP1Y_AT34517
PA S1 unassigned subfamily S1C unassigned peptidases MER0248600 PP1Y_AT33493
PB C44 C44.001 amidophosphoribosyltransferase precursor MER0249771 PP1Y_AT30498
PB C44 C44.003 glutamate synthase (NADPH) large chain MER0458360 PP1Y_AT884
PB C44 non-peptidase homologue family C44 non-peptidase homologues MER0247633 glmS PP1Y_AT20584
PB C44 non-peptidase homologue family C44 non-peptidase homologues MER0458362 PP1Y_AT21673
PB C44 unassigned family C44 unassigned peptidases MER0250187 PP1Y_AT9467
PB C44 unassigned family C44 unassigned peptidases MER0458361 PP1Y_AT18181
PB T1 T01.006 HslV component of HslUV peptidase MER0323734 hslV PP1Y_AT12146
PB T1 unassigned family T1 unassigned peptidases MER0249697 PP1Y_AT19464
PB T3 T03.001 gamma-glutamyltransferase 1 (bacterial-type) MER0249569 PP1Y_AT26567
PB T3 T03.025 oxamate amidohydrolase proenzyme (Klebsiella pneumonia) MER0248478 PP1Y_AT32760
PB T3 T03.025 oxamate amidohydrolase proenzyme (Klebsiella pneumonia) MER0249356 PP1Y_Mpl6461
PB T3 T03.025 oxamate amidohydrolase proenzyme (Klebsiella pneumonia) MER0249659 PP1Y_Mpl11391
PC C26 C26.955 aminodeoxychorismate synthase, subunit II MER0250182 PP1Y_AT27098
PC C26 C26.957 GMP synthase MER0248071 guaA PP1Y_AT34828
PC C26 C26.964 CTP synthetase MER0451027 pyrG PP1Y_AT27040
PC C26 unassigned family C26 unassigned peptidases MER0446583 hisH PP1Y_AT8525
PC C26 unassigned family C26 unassigned peptidases MER0248640 carA PP1Y_AT24898
PC C56 C56.001 PfpI peptidase MER0248189 PP1Y_AT28156
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0895703 PP1Y_AT16810
PE T5 T05.001 ornithine acetyltransferase precursor MER0248958 argJ PP1Y_AT29336
SB S8 unassigned subfamily S8A unassigned peptidases MER0976352 PP1Y_AT10042
SB S8 unassigned subfamily S8A unassigned peptidases MER0248390 PP1Y_AT3314
SB S8 unassigned subfamily S8A unassigned peptidases MER0249037 PP1Y_AT29776
SB S8 unassigned subfamily S8B unassigned peptidases MER0248549 PP1Y_AT33215
SC S9 S09.010 oligopeptidase B MER0248164 PP1Y_AT35304
SC S9 S09.940 S-formylglutathione hydrolase FrmB (Escherichi coli) MER0249682 PP1Y_AT9409
SC S9 S09.951 brefeldin A esterase MER0249983 PP1Y_Mpl3531
SC S9 non-peptidase homologue subfamily S9C non-peptidase homologues MER1114512
SC S9 unassigned subfamily S9A unassigned peptidases MER0248056 PP1Y_AT17165
SC S9 unassigned subfamily S9C unassigned peptidases MER0250125 PP1Y_AT16351
SC S9 unassigned family S9 unassigned peptidases MER0248191 PP1Y_AT28187 PP1Y_AT28187
SC S9 unassigned family S9 unassigned peptidases MER0248968 PP1Y_AT1976
SC S9 unassigned family S9 unassigned peptidases MER0249218 PP1Y_AT4476
SC S9 unassigned family S9 unassigned peptidases MER0247977 PP1Y_AT6684
SC S9 unassigned family S9 unassigned peptidases MER0248899 PP1Y_AT18518
SC S9 unassigned family S9 unassigned peptidases MER0249849 PP1Y_AT30886
SC S10 unassigned family S10 unassigned peptidases MER0249321 PP1Y_AT34079
SC S10 unassigned family S10 unassigned peptidases MER0490366 PP1Y_Mpl9771
SC S10 unassigned family S10 unassigned peptidases MER0490367 PP1Y_Mpl9826
SC S10 unassigned family S10 unassigned peptidases MER0248255 PP1Y_Mpl9859
SC S15 non-peptidase homologue family S15 non-peptidase homologues MER1024271 PP1Y_Mpl293
SC S15 non-peptidase homologue family S15 non-peptidase homologues MER0247816 PP1Y_AT13112
SC S15 non-peptidase homologue family S15 non-peptidase homologues MER0249668 PP1Y_Mpl37
SC S15 non-peptidase homologue family S15 non-peptidase homologues MER0249709 PP1Y_Mpl11573
SC S33 S33.001 prolyl aminopeptidase MER0247841 PP1Y_AT13264
SC S33 unassigned family S33 unassigned peptidases MER0249951 PP1Y_AT5227
SC S33 unassigned family S33 unassigned peptidases MER0249405 PP1Y_AT15435
SC S33 unassigned family S33 unassigned peptidases MER0248350 PP1Y_AT28939
SC S33 unassigned family S33 unassigned peptidases MER0247723 PP1Y_AT31623
SC S33 unassigned family S33 unassigned peptidases MER0247785 PP1Y_AT31854
SC S33 unassigned family S33 unassigned peptidases MER0248479 PP1Y_AT32780
SC S33 unassigned family S33 unassigned peptidases MER0248481 PP1Y_Mpl1525
SC S33 unassigned family S33 unassigned peptidases MER0249889 PP1Y_Mpl3096
SC S33 unassigned family S33 unassigned peptidases MER0249543 PP1Y_Mpl7373
SC S33 unassigned family S33 unassigned peptidases MER0248142 PP1Y_Mpl9143
SE S11 unassigned family S11 unassigned peptidases MER0248553 PP1Y_AT4105
SE S11 unassigned family S11 unassigned peptidases MER0249456 PP1Y_AT25981
SE S12 S12.950 esterase EstB MER0249394 PP1Y_AT5139
SE S12 non-peptidase homologue family S12 non-peptidase homologues MER0248139 PP1Y_AT540
SE S12 unassigned family S12 unassigned peptidases MER0249064 PP1Y_Mpl1792
SE S13 non-peptidase homologue family S13 non-peptidase homologues MER1030205 PP1Y_AT4105
SF S24 S24.001 repressor LexA MER0250186 lexA PP1Y_AT27141
SF S24 unassigned family S24 unassigned peptidases MER0249315 PP1Y_AT14864
SF S24 unassigned family S24 unassigned peptidases MER0247518 PP1Y_AT27727
SF S26 S26.001 signal peptidase I MER0249270 PP1Y_AT4721
SF S26 S26.001 signal peptidase I MER0249039 PP1Y_AT29811
SF S26 S26.014 TraF peptidase MER0247696 PP1Y_AT2527
SF S26 non-peptidase homologue subfamily S26A non-peptidase homologues MER0249365 PP1Y_AT15235
SH S73 S73.001 gpO peptidase (Enterobacteria phage P2) MER0248466 PP1Y_AT3685
SH S78 S78.001 prohead peptidase (bacteriophage HK97) MER0248228 PP1Y_AT35556
SJ S16 S16.001 Lon-A peptidase MER0248289 PP1Y_AT21094
SJ S16 S16.A04 DNA repair protein RadA (Escherichia coli) MER0248786 PP1Y_AT25632
SJ S16 non-peptidase homologue family S16 non-peptidase homologues MER0249314 PP1Y_AT34015
SJ S16 unassigned family S16 unassigned peptidases MER1323925
SK S14 S14.001 peptidase Clp (type 1) MER0248923 clpP PP1Y_AT18657
SK S41 unassigned subfamily S41A unassigned peptidases MER0248151 PP1Y_AT615
SK S49 unassigned subfamily S49C unassigned peptidases MER1071866 PP1Y_Mpl10480
SK S49 unassigned family S49 unassigned peptidases MER0298873 PP1Y_AT18626
SS S66 S66.001 murein tetrapeptidase LD-carboxypeptidase (Pseudomonas-type) MER0247609 PP1Y_AT2199
SS S66 unassigned family S66 unassigned peptidases MER0248317 PP1Y_AT21247
U- U74 unassigned family U74 unassigned peptidases MER1023258

GENOME ANALYSIS: Comparison with 11 completely sequenced genomes from genus Novosphingobium
Family Comment
A32 significant presence (2 homologues)
C26 significant decrease in homologues (5 homologues)
C44 lineage specific expansion (6 homologues)
C56 significant presence (2 homologues)
C93 significant presence (1 homologues)
C96 significant presence (2 homologues)
M1 significant presence (2 homologues)
M2 significant presence (1 homologues)
M3 significant presence (1 homologues)
M13 significant presence (2 homologues)
M16 lineage specific expansion (5 homologues)
M20 significant decrease in homologues (7 homologues)
M23 lineage specific expansion (7 homologues)
M24 lineage specific expansion (5 homologues)
M38 lineage specific expansion (7 homologues)
M48 lineage specific expansion (4 homologues)
M56 significant presence (1 homologues)
N6 significant presence (1 homologues)
S1 significant decrease in homologues (1 homologues)
S8 lineage specific expansion (4 homologues)
S9 lineage specific expansion (12 homologues)
S10 significant presence (4 homologues)
S12 significant decrease in homologues (3 homologues)
S13 significant presence (1 homologues)
S16 lineage specific expansion (4 homologues)
S33 lineage specific expansion (11 homologues)
S73 significant presence (1 homologues)
S78 significant presence (1 homologues)
U74 significant presence (1 homologues)

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