Geobacter bemidjiensis

Taxonomy
Taxonomy database identifier: 225194
Superkingdom Bacteria
Phylum Proteobacteria
Class Deltaproteobacteria
Order Desulfuromonadales
Family Geobacteraceae
Genus Geobacter
Species bemidjiensis
Peptidase View peptidase sequences from Geobacter bemidjiensis
Count of known and putative peptidases: 97, non-peptidase homologues 39
Completely sequences genomes from subspecies and strains Protein coding genes

To show all strains with completely sequenced genomes, click here.

Clan Family MEROPS ID Peptidase or homologue (subtype) MERNUM Gene Link Locus Megabases
AC A8 unassigned family A8 unassigned peptidases MER0125859 lspA Gbem_3649
AD A24 A24.019 ComC peptidase MER0119287 pilD Gbem_1532
AE A31 unassigned family A31 unassigned peptidases MER0101571 hyaP Gbem_0380
AE A31 unassigned family A31 unassigned peptidases MER0099709 hybP Gbem_3135
AE A31 unassigned family A31 unassigned peptidases MER0098240 mvhP Gbem_3881
CA C1 unassigned subfamily C1A unassigned peptidases MER0098688 Gbem_3867
CD C13 unassigned family C13 unassigned peptidases MER0099772 Gbem_2722
CL C82 unassigned subfamily C82A unassigned peptidases MER0101239 Gbem_0971
CL C82 unassigned subfamily C82A unassigned peptidases MER0099922 Gbem_1366
CL C82 unassigned subfamily C82A unassigned peptidases MER0099782 Gbem_2689
CL C82 unassigned subfamily C82A unassigned peptidases MER0099694 Gbem_3161
CL C82 unassigned subfamily C82A unassigned peptidases MER0098211 Gbem_3988
CL C82 unassigned subfamily C82A unassigned peptidases MER0098186 Gbem_3990
CO C40 C40.004 spr peptidase MER0125560 Gbem_3368
CO C40 C40.006 PgpA peptidase MER0101196 Gbem_1003
CO C40 unassigned family C40 unassigned peptidases MER0101260 Gbem_0896
G- G5 unassigned family G5 unassigned peptidases MER0099873 Gbem_1765
MA M1 M01.005 alanyl aminopeptidase (bacterial-type) MER0101637 pepN Gbem_0268
MA M1 unassigned family M1 unassigned peptidases MER0099875 Gbem_1761
MA M3 unassigned family M3 unassigned peptidases MER0122204 Gbem_1295
MA M41 M41.001 FtsH peptidase MER0105610 ftsH-2 Gbem_2639
MA M41 unassigned family M41 unassigned peptidases MER0105608 ftsH-1 Gbem_1012
MA M41 unassigned family M41 unassigned peptidases MER0105609 ftsH-3 Gbem_2307
MA M48 M48.019 GSU1437 putative peptidase MER0099664 Gbem_3390
MA M48 unassigned subfamily M48A unassigned peptidases MER0101330 Gbem_0568
MA M48 unassigned subfamily M48B unassigned peptidases MER0120297 htpX-2 Gbem_1935
MA M48 unassigned subfamily M48B unassigned peptidases MER0117546 Gbem_2480
MA M48 unassigned subfamily M48B unassigned peptidases MER0099682 htpX-1 Gbem_3280
MA M48 unassigned subfamily M48C unassigned peptidases MER0101467 Gbem_0448
MA M48 unassigned subfamily M48C unassigned peptidases MER0101346 Gbem_0514
MD M15 non-peptidase homologue subfamily M15A non-peptidase homologues MER0099783 Gbem_2663
ME M16 non-peptidase homologue family M16 non-peptidase homologues MER0101272 Gbem_0686
ME M16 unassigned subfamily M16B unassigned peptidases MER0101271 Gbem_0687
ME M16 unassigned subfamily M16B unassigned peptidases MER0099939 Gbem_1309
ME M16 unassigned subfamily M16B unassigned peptidases MER0099762 Gbem_2730
ME M16 unassigned subfamily M16B unassigned peptidases MER0099143 Gbem_3547
MF M17 unassigned family M17 unassigned peptidases MER0105859 pepA Gbem_2725
MG M24 non-peptidase homologue subfamily M24B non-peptidase homologues MER0099878 Gbem_1651
MG M24 non-peptidase homologue family M24 non-peptidase homologues MER0099752 Gbem_2836
MG M24 non-peptidase homologue family M24 non-peptidase homologues MER0098144 Gbem_4018
MG M24 unassigned subfamily M24A unassigned peptidases MER0101248 map Gbem_0955
MG M24 unassigned subfamily M24B unassigned peptidases MER0099892 Gbem_1560
MH M20 unassigned subfamily M20C unassigned peptidases MER0100563 Gbem_3389
MH M20 unassigned family M20D unassigned peptidases MER0099817 Gbem_2148
MH M20 unassigned family M20D unassigned peptidases MER0099816 Gbem_2228
MH M20 unassigned family M20 unassigned peptidases MER0099684 argE Gbem_3178
MH M28 unassigned subfamily M28F unassigned peptidases MER0100904 Gbem_3219
MH M28 unassigned subfamily M28F unassigned peptidases MER0105970 Gbem_0054
MH M42 unassigned family M42 unassigned peptidases MER0109597 Gbem_0763
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0099848 pyrC Gbem_1897
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0099750 Gbem_3009
MM M50 unassigned subfamily M50B unassigned peptidases MER0099813 Gbem_2299
MM M50 unassigned subfamily M50B unassigned peptidases MER0099753 Gbem_2749
MO M23 non-peptidase homologue subfamily M23B non-peptidase homologues MER0100330 Gbem_1289
MO M23 unassigned subfamily M23B unassigned peptidases MER0125368 Gbem_2376
MO M23 unassigned subfamily M23B unassigned peptidases MER0099170 Gbem_3500
MO M23 unassigned subfamily M23B unassigned peptidases MER0099035 Gbem_3591
MO M23 unassigned subfamily M23B unassigned peptidases MER0122319 Gbem_3080
MP M67 unassigned subfamily M67B unassigned peptidases MER0099837 Gbem_1979
MQ M29 unassigned family M29 unassigned peptidases MER0120219 Gbem_1311
MU M103 M103.UNW family M103 non-peptidase homologues MER0105793 Gbem_2442
MU M103 M103.UPW family M103 unassigned peptidases MER0099775 tldD Gbem_2721
NB N6 N06.A01 FlhB protein (Escherichia coli) MER0327352
PA S1 S01.A73 CG6592 protein (Drosophila melanogaster) MER0100950 Gbem_1113
PA S1 unassigned subfamily S1C unassigned peptidases MER0101645 Gbem_0244
PA S1 unassigned subfamily S1C unassigned peptidases MER0099662 degQ Gbem_3394
PB C44 C44.001 amidophosphoribosyltransferase precursor MER0099879 asnB-4 Gbem_1615
PB C44 C44.001 amidophosphoribosyltransferase precursor MER0099855 asnB-5 Gbem_1778
PB C44 C44.001 amidophosphoribosyltransferase precursor MER0126644 purF Gbem_2329
PB C44 C44.003 glutamate synthase (NADPH) large chain MER0099751 gltB Gbem_2866
PB C44 non-peptidase homologue family C44 non-peptidase homologues MER0101689 glmS Gbem_0090
PB C44 unassigned family C44 unassigned peptidases MER0101079 asnB-3 Gbem_1081
PC C26 C26.955 aminodeoxychorismate synthase, subunit II MER0099839 trpG Gbem_1955
PC C26 C26.957 GMP synthase MER0101262 guaA Gbem_0765
PC C26 C26.964 CTP synthetase MER0099882 pyrG Gbem_1600
PC C26 C26.965 imidazole glycerol phosphate synthase subunit HisH MER0098752 hisH Gbem_3702
PC C26 unassigned family C26 unassigned peptidases MER0099921 Gbem_1504
PC C26 unassigned family C26 unassigned peptidases MER0099846 carA Gbem_1898
PC C56 C56.001 PfpI peptidase MER0123006 Gbem_4051
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0101123 Gbem_1020
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0099876 Gbem_1704
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0099795 purQ Gbem_2330
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0913565 Gbem_0384
PE T5 T05.002 ArgJ protein (archea) MER0099897 argJ Gbem_1527
SB S8 non-peptidase homologue subfamily S8A non-peptidase homologues MER1280941
SB S8 unassigned subfamily S8A unassigned peptidases MER0099722 Gbem_3055
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0101261 Gbem_0783
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0099803 Gbem_2303
SC S9 unassigned subfamily S9C unassigned peptidases MER0099668 Gbem_3326
SC S9 unassigned family S9 unassigned peptidases MER0099702 Gbem_3149
SC S9 unassigned family S9 unassigned peptidases MER0098929 Gbem_3655
SC S10 unassigned family S10 unassigned peptidases MER0099835 Gbem_2090
SC S33 S33.B15 PF3D7_1410100 g.p. (Plasmodium falciparum) MER0101794 Gbem_0086
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0101548 Gbem_0442
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0099834 Gbem_2101
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0099693 Gbem_3168
SC S33 unassigned family S33 unassigned peptidases MER0101620 Gbem_0341
SC S33 unassigned family S33 unassigned peptidases MER0101616 metX Gbem_0349
SC S33 unassigned family S33 unassigned peptidases MER0118591 bioH Gbem_0832
SC S33 unassigned family S33 unassigned peptidases MER0101107 Gbem_1023
SC S33 unassigned family S33 unassigned peptidases MER0099849 Gbem_1853
SE S11 S11.004 K15-type DD-transpeptidase MER0101238 Gbem_0977
SE S12 S12.950 esterase EstB MER0118352 Gbem_2426
SE S12 unassigned family S12 unassigned peptidases MER0099893 Gbem_1529
SE S13 S13.002 D-Ala-D-Ala carboxypeptidase (Actinomadura-type) MER0099138 Gbem_3581
SE S13 unassigned family S13 unassigned peptidases MER1315766
SF S24 S24.001 repressor LexA MER0101426 lexA-2 Gbem_0501
SF S24 S24.001 repressor LexA MER0122318 lexA Gbem_1758
SF S24 non-peptidase homologue family S24 non-peptidase homologues MER0101282 Gbem_0633
SF S26 S26.025 signal peptidase sipX MER0105281 lepB Gbem_1882
SJ S16 S16.001 Lon-A peptidase MER0109452 loN-3 Gbem_0604
SJ S16 S16.001 Lon-A peptidase MER0109813 lon Gbem_0689
SJ S16 S16.001 Lon-A peptidase MER0116994 loN-2 Gbem_1274
SJ S16 S16.A04 DNA repair protein RadA (Escherichia coli) MER0098153 radA Gbem_4000
SJ S16 non-peptidase homologue family S16 non-peptidase homologues MER0098863 Gbem_3685
SJ S16 unassigned family S16 unassigned peptidases MER0101268 Gbem_0708
SJ S16 unassigned family S16 unassigned peptidases MER0109542 lon Gbem_1019
SK S14 S14.001 peptidase Clp (type 1) MER0100343 clpP Gbem_1272
SK S41 S41.004 C-terminal processing peptidase-3 MER0100562 ctpA-2 Gbem_1290
SK S41 S41.004 C-terminal processing peptidase-3 MER0105181 ctpA-1 Gbem_1646
SK S49 unassigned subfamily S49B unassigned peptidases MER0100448 nfeD Gbem_1213
SK S49 unassigned subfamily S49B unassigned peptidases MER0105792 Gbem_3112
SK S49 unassigned subfamily S49B unassigned peptidases MER0099465 Gbem_3471
SS S66 unassigned family S66 unassigned peptidases MER0098238 Gbem_3904
ST S54 S54.004 AarA peptidase MER0101431 Gbem_0462
ST S54 unassigned family S54 unassigned peptidases MER0099814 Gbem_2247
U- U32 U32.002 collagenase (Helicobacter-type) MER0099780 Gbem_2714
U- U32 unassigned family U32 unassigned peptidases MER0101084 Gbem_1027
U- U32 unassigned family U32 unassigned peptidases MER0099141 Gbem_3552

GENOME ANALYSIS: Comparison with 11 completely sequenced genomes from genus Geobacter
Family Comment
C13 significant presence (1 homologues)
M20 lineage specific expansion (4 homologues)
S9 lineage specific expansion (5 homologues)