Dinoroseobacter shibae

Taxonomy
Taxonomy database identifier: 215813
Superkingdom Bacteria
Phylum Proteobacteria
Class Alphaproteobacteria
Order Rhodobacterales
Family Rhodobacteraceae
Genus Dinoroseobacter
Species shibae
Peptidase View peptidase sequences from Dinoroseobacter shibae
Count of known and putative peptidases: 100, non-peptidase homologues 22
Completely sequences genomes from subspecies and strains Protein coding genes

To show all strains with completely sequenced genomes, click here.

Clan Family MEROPS ID Peptidase or homologue (subtype) MERNUM Gene Link Locus Megabases
AA A32 A32.002 RC1339 g.p. (Rickettsia conorii) MER0241743 Dshi_1347
AC A8 unassigned family A8 unassigned peptidases MER0091723 lspA Dshi_0359
AC A8 unassigned family A8 unassigned peptidases MER0091724 lspA Dshi_3952
AD A24 unassigned subfamily A24B unassigned peptidases MER0099784 Dshi_1121
CL C82 C82.003 ykuD transpeptidase MER0076668 Dshi_3406 Dvul_2495
CL C82 C82.003 ykuD transpeptidase MER0099233 Dshi_3936
CL C82 C82.003 ykuD transpeptidase MER0099232 Dshi_3945
CL C82 C82.003 ykuD transpeptidase MER0099238 Dshi_3595 Dshi_3933
CL C82 C82.A01 LdtF protein (Escherichia coli) MER0244106 Dshi_3494
CL C82 unassigned subfamily C82A unassigned peptidases MER0090935 Dshi_3496 Dshi_3496
CL C82 unassigned subfamily C82A unassigned peptidases MER0090934 Dshi_3781 Dshi_4057
CO C40 C40.001 dipeptidyl-peptidase VI (bacteria) MER0094132 Dshi_3233
CO C40 unassigned family C40 unassigned peptidases MER0099820 Dshi_2164
MA M1 M01.005 alanyl aminopeptidase (bacterial-type) MER0091604 pepN Dshi_1223
MA M3 unassigned subfamily M3A unassigned peptidases MER0093539 dcp Dshi_2973
MA M3 unassigned family M3 unassigned peptidases MER0093538 Dshi_2603
MA M6 unassigned family M6 unassigned peptidases MER0099768 Dshi_0647
MA M10 unassigned subfamily M10B unassigned peptidases MER0090879 Dshi_3402
MA M32 unassigned family M32 unassigned peptidases MER0092675 Dshi_1511
MA M41 non-peptidase homologue family M41 non-peptidase homologues MER0875336 Dshi_0424
MA M41 unassigned family M41 unassigned peptidases MER0074567 ftsH Dshi_1115
MA M48 unassigned subfamily M48C unassigned peptidases MER0099807 Dshi_1773
MA M48 unassigned subfamily M48C unassigned peptidases MER0099838 Dshi_2623
MA M48 unassigned subfamily M48C unassigned peptidases MER0099862 Dshi_3470
MA M48 unassigned family M48 unassigned peptidases MER0099786 Dshi_1167
MA M56 unassigned family M56 unassigned peptidases MER0099856 Dshi_3134
MA M78 unassigned family M78 unassigned peptidases MER0910316 Dshi_0050
MD M15 M15.011 vanX D-Ala-D-Ala dipeptidase MER0099858 ddpX Dshi_3149
MD M74 unassigned family M74 unassigned peptidases MER0077786 mepA Dshi_3338
ME M16 M16.019 YMXG peptidase MER0093297 pqqL2 Dshi_0361
ME M16 non-peptidase homologue subfamily M16B non-peptidase homologues MER0093296 pqqL1 Dshi_0362
ME M16 non-peptidase homologue subfamily M16B non-peptidase homologues MER0094328 pqqL1 Dshi_0362
ME M16 unassigned subfamily M16B unassigned peptidases MER0093295 Dshi_1147
MF M17 unassigned family M17 unassigned peptidases MER0093298 pepA2 Dshi_3234
MF M17 unassigned family M17 unassigned peptidases MER0093294 pepA Dshi_1191
MG M24 M24.001 methionyl aminopeptidase 1 (Escherichia-type) MER0091156 map Dshi_0117
MG M24 unassigned subfamily M24A unassigned peptidases MER0425813
MG M24 unassigned subfamily M24B unassigned peptidases MER0093040 Dshi_2721
MH M20 unassigned subfamily M20A unassigned peptidases MER0091956 dapE Dshi_0012
MH M20 unassigned family M20D unassigned peptidases MER0091957 Dshi_1161
MH M20 unassigned family M20D unassigned peptidases MER0091958 Dshi_1288
MH M20 unassigned subfamily M20F unassigned peptidases MER0099787 Dshi_1181
MH M20 unassigned family M20 unassigned peptidases MER0099793 amaB Dshi_1367
MH M20 unassigned family M20 unassigned peptidases MER0091955 dapE2 Dshi_3020
MJ M19 non-peptidase homologue family M19 non-peptidase homologues MER0093651 rDP Dshi_0578
MJ M38 M38.982 urease MER0099830 ureC Dshi_2365
MJ M38 M38.A02 PyrC protein (Escherichia coli) MER0099831 pyrC2 Dshi_2371
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0865930 Dshi_2289
MM M50 M50.004 RseP peptidase MER0099797 ecfE Dshi_1498
MO M23 M23.004 lysostaphin MER0099819 Dshi_2138
MO M23 M23.009 Mername-AA292 peptidase MER0090988 Dshi_1176
MO M23 M23.009 Mername-AA292 peptidase MER0090987 Dshi_3955
MS M75 M75.001 imelysin MER0099766 irpA Dshi_0563
MU M103 M103.001 TldD peptidase (Escherichia coli) MER0099785 tldD Dshi_1139
MU M103 M103.950 microcin-processing peptidase 1 homologue MER0074568 pmbA Dshi_0064
NB N6 unassigned family N6 unassigned peptide lyases MER0405715 flhB Dshi_3256
PA S1 S01.260 B1598 peptidase MER0099850 Dshi_2893
PA S1 S01.260 B1598 peptidase MER0099456 Dshi_3870
PA S1 unassigned subfamily S1A unassigned peptidases MER0099822 Dshi_2202
PA S1 unassigned subfamily S1C unassigned peptidases MER0099776 Dshi_0895
PA S1 unassigned subfamily S1C unassigned peptidases MER0099799 Dshi_1540
PA S1 unassigned subfamily S1C unassigned peptidases MER0099840 degP Dshi_2733
PA S1 unassigned subfamily S1C unassigned peptidases MER0099284 Dshi_3911
PB C44 C44.001 amidophosphoribosyltransferase precursor MER0099818 purF Dshi_2132
PB C44 C44.003 glutamate synthase (NADPH) large chain MER0099756 gltB Dshi_0002
PB C44 non-peptidase homologue family C44 non-peptidase homologues MER0099792 glmS Dshi_1293
PB C44 unassigned family C44 unassigned peptidases MER0099812 Dshi_1870
PB S45 S45.003 cephalosporin C acylase precursor MER0099800 Dshi_1565
PB T1 T01.006 HslV component of HslUV peptidase MER0091310 hslV Dshi_3440
PB T1 unassigned family T1 unassigned peptidases MER0099859 Dshi_3245
PB T3 T03.001 gamma-glutamyltransferase 1 (bacterial-type) MER0091330 ggt2 Dshi_0675
PB T3 T03.025 oxamate amidohydrolase proenzyme (Klebsiella pneumonia) MER0091313
PB T3 T03.025 oxamate amidohydrolase proenzyme (Klebsiella pneumonia) MER0091312 ggt1 Dshi_0071
PC C26 C26.955 aminodeoxychorismate synthase, subunit II MER0099809 trpG Dshi_1798
PC C26 C26.957 GMP synthase MER0099801 guaA Dshi_1587
PC C26 C26.964 CTP synthetase MER0099841 pyrG Dshi_2744
PC C26 C26.965 imidazole glycerol phosphate synthase subunit HisH MER0099773 hisH Dshi_0795
PC C26 C26.A05 gamma-glutamyl peptidase 1 (Arabidopsis thaliana) MER0099823 Dshi_2225
PC C26 unassigned family C26 unassigned peptidases MER0099283 Dshi_3925
PC C26 unassigned family C26 unassigned peptidases MER0099790 carA Dshi_2387
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0099469 Dshi_3631
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0099760 Dshi_1525
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0099815 Dshi_2118
PE T5 T05.001 ornithine acetyltransferase precursor MER0091311 argJ Dshi_3565
SB S8 unassigned subfamily S8A unassigned peptidases MER0090850 Dshi_0257
SB S8 unassigned subfamily S8A unassigned peptidases MER0090851 Dshi_2426
SB S8 unassigned subfamily S8A unassigned peptidases MER0090849 apr Dshi_3421
SC S9 S09.940 S-formylglutathione hydrolase FrmB (Escherichi coli) MER0099764 Dshi_0474
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0099860 Dshi_3351
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0099231 Dshi_4173
SC S9 unassigned subfamily S9C unassigned peptidases MER0099804 Dshi_1634
SC S9 unassigned subfamily S9C unassigned peptidases MER0099806 Dshi_1764
SC S9 unassigned family S9 unassigned peptidases MER0099771 Dshi_0713
SC S9 unassigned family S9 unassigned peptidases MER0099805 Dshi_1688
SC S9 unassigned family S9 unassigned peptidases MER0099811 Dshi_1840
SC S9 unassigned family S9 unassigned peptidases MER0099826 Dshi_2243
SC S33 S33.001 prolyl aminopeptidase MER0099864 pip Dshi_3551
SC S33 unassigned family S33 unassigned peptidases MER0099765 pdhC2 Dshi_0536
SC S33 unassigned family S33 unassigned peptidases MER0099774 Dshi_0820
SC S33 unassigned family S33 unassigned peptidases MER0099781 catD Dshi_1007
SC S33 unassigned family S33 unassigned peptidases MER0099796 Dshi_1435
SC S33 unassigned family S33 unassigned peptidases MER0099802 Dshi_1594
SC S33 unassigned family S33 unassigned peptidases MER0099857 Dshi_3138
SC S33 unassigned family S33 unassigned peptidases MER0099863 bchO Dshi_3504
SE S11 unassigned family S11 unassigned peptidases MER0099769 dacC2 Dshi_0669
SE S11 unassigned family S11 unassigned peptidases MER0099777 dacC1 Dshi_0923
SE S12 S12.950 esterase EstB MER0099827 Dshi_2284
SE S12 S12.A23 GYO_0385 g.p. (Bacillus subtilis) MER0099788 Dshi_1198
SE S12 unassigned family S12 unassigned peptidases MER0099770 Dshi_0676
SE S13 unassigned family S13 unassigned peptidases MER0074565 Dshi_2208
SF S24 S24.001 repressor LexA MER0099810 lexA Dshi_1803
SF S26 S26.001 signal peptidase I MER0091722 lepB Dshi_0199
SH S78 S78.001 prohead peptidase (bacteriophage HK97) MER0099821 Dshi_2175
SJ S16 S16.001 Lon-A peptidase MER0099808 lon Dshi_1777
SJ S16 S16.A04 DNA repair protein RadA (Escherichia coli) MER0476925 Dshi_2129
SK S14 S14.001 peptidase Clp (type 1) MER0074566 clpP Dshi_1388
SK S41 S41.004 C-terminal processing peptidase-3 MER0099758 prc Dshi_0091
SK S49 unassigned subfamily S49B unassigned peptidases MER0099767 Dshi_0640
ST S54 S54.027 RhoII peptidase (Haloferax volcanii) and similar MER0099789 Dshi_1200
ST S54 non-peptidase homologue family S54 non-peptidase homologues MER1078891 Dshi_2835
ST S54 unassigned family S54 unassigned peptidases MER0099861 Dshi_3383

GENOME ANALYSIS: Comparison with 100 completely sequenced genomes from family Rhodobacteraceae
Family Comment
M6 significant presence (1 homologues)
M78 significant presence (1 homologues)