Flavobacterium columnare

Taxonomy
Taxonomy database identifier: 996
Superkingdom Bacteria
Phylum Bacteroidetes
Class Flavobacteria
Order Flavobacteriales
Family Flavobacteriaceae
Genus Flavobacterium
Species columnare
Peptidase View peptidase sequences from Flavobacterium columnare
Count of known and putative peptidases: 84, non-peptidase homologues 26
Completely sequences genomes from subspecies and strains Protein coding genes

To show all strains with completely sequenced genomes, click here.

Clan Family MEROPS ID Peptidase or homologue (subtype) MERNUM Gene Link Locus Megabases
AC A8 unassigned family A8 unassigned peptidases MER0296404 lspA FCOL_13180
C- C116 C116.UPW family C116 homologues, unassigned MER0314766
CA C1 unassigned subfamily C1A unassigned peptidases MER0345814 FCOL_08095
CA C1 unassigned subfamily C1B unassigned peptidases MER1167389
CA C1 unassigned subfamily C1B unassigned peptidases MER1167223
CA C1 unassigned subfamily C1B unassigned peptidases MER0282000 FCOL_11135
CA C39 C39.001 bacteriocin-processing peptidase MER0282399 FCOL_01430
CD C25 unassigned family C25 unassigned peptidases MER0282043 fjo24
CO C40 C40.009 NLP/P60 (Nostoc punctiforme)-like putative peptidase MER0282026 FCOL_06400
CO C40 non-peptidase homologue family C40 non-peptidase homologues MER0282458 FCOL_09755
CO C40 unassigned family C40 unassigned peptidases MER0282362 FCOL_04690
MA M1 unassigned family M1 unassigned peptidases MER0282122 FCOL_02195
MA M1 unassigned family M1 unassigned peptidases MER0282151 FCOL_03355
MA M1 unassigned family M1 unassigned peptidases MER0282477 FCOL_06095
MA M1 unassigned family M1 unassigned peptidases MER0282305 FCOL_08290
MA M1 unassigned family M1 unassigned peptidases MER0282294 FCOL_13075
MA M3 unassigned subfamily M3A unassigned peptidases MER0282076 FCOL_11325
MA M4 unassigned family M4 unassigned peptidases MER0091620
MA M4 unassigned family M4 unassigned peptidases MER1194411
MA M4 unassigned family M4 unassigned peptidases MER1192090
MA M4 unassigned family M4 unassigned peptidases MER0287902 FCOL_02025
MA M4 unassigned family M4 unassigned peptidases MER0282183 FCOL_03435
MA M106 M106.UPW family M106 unassigned peptidases MER1376780
MA M106 M106.UPW family M106 unassigned peptidases MER1376722
MA M106 M106.UPW family M106 unassigned peptidases MER1376752
MA M106 M106.UPW family M106 unassigned peptidases MER1376775
MA M106 M106.UPW family M106 unassigned peptidases MER1376826
MA M106 M106.UPW family M106 unassigned peptidases MER1376799
MA M106 M106.UPW family M106 unassigned peptidases MER1376821
MA M106 M106.UPW family M106 unassigned peptidases MER1377111
MA M13 unassigned family M13 unassigned peptidases MER0282301 pepO
MA M13 unassigned family M13 unassigned peptidases MER1226656
MA M13 unassigned family M13 unassigned peptidases MER0282369 FCOL_00245
MA M13 unassigned family M13 unassigned peptidases MER0339353 FCOL_06360
MA M36 unassigned family M36 unassigned peptidases MER0282500 FCOL_10225
MA M41 M41.A17 DDB_G0284249 g.p. (Dictyostelium discoideum) MER0282044 ftsH FCOL_01970
MA M43 M43.001 cytophagalysin MER0281984 FCOL_10745
MA M43 M43.007 ulilysin (Methanosarcina acetivorans) MER0282226 FCOL_03605
MA M43 non-peptidase homologue subfamily M43B non-peptidase homologues MER0882500 FCOL_07985
MA M43 unassigned subfamily M43A unassigned peptidases MER0282243 FCOL_07755
MA M43 unassigned subfamily M43B unassigned peptidases MER0282533 FCOL_06600
MA M43 unassigned subfamily M43B unassigned peptidases MER0282002 FCOL_06695
MA M43 unassigned subfamily M43B unassigned peptidases MER0282452 FCOL_10090
MA M43 unassigned subfamily M43B unassigned peptidases MER0282062 FCOL_11280
MA M43 unassigned subfamily M43B unassigned peptidases MER0282296 FCOL_12715
MA M48 unassigned subfamily M48C unassigned peptidases MER0282367 FCOL_04345
MA M48 unassigned subfamily M48C unassigned peptidases MER0282419 FCOL_08980
MA M48 unassigned subfamily M48C unassigned peptidases MER0282288 FCOL_13060
MA M48 unassigned family M48 unassigned peptidases MER0282244 FCOL_00295
MA M56 unassigned family M56 unassigned peptidases MER0282048 FCOL_06815
MA M61 unassigned family M61 unassigned peptidases MER0282338 FCOL_05005
MC M14 non-peptidase homologue subfamily M14A non-peptidase homologues MER0282540 FCOL_05900
MD M15 M15.021 Ply500 L-Ala-D-Glu peptidase MER0282461 FCOL_05335
MD M15 unassigned subfamily M15C unassigned peptidases MER0282395 FCOL_09240
MD M15 unassigned subfamily M15D unassigned peptidases MER0282534 FCOL_06615
ME M16 non-peptidase homologue family M16 non-peptidase homologues MER0282416 FCOL_13540
ME M16 non-peptidase homologue family M16 non-peptidase homologues MER0282224 FCOL_12145
ME M16 unassigned subfamily M16B unassigned peptidases MER0391281 FCOL_00010
ME M16 unassigned family M16 unassigned peptidases MER0282223 FCOL_12145
MG M24 unassigned subfamily M24A unassigned peptidases MER0282152 map FCOL_03000
MG M24 unassigned subfamily M24B unassigned peptidases MER0282344 FCOL_09125
MH M20 M20.003 peptidase T MER0282154 pepT FCOL_02290
MH M20 unassigned subfamily M20A unassigned peptidases MER0282300 FCOL_08645
MH M20 unassigned subfamily M20C unassigned peptidases MER0282536 FCOL_01755
MH M20 unassigned subfamily M20F unassigned peptidases MER0282417 FCOL_09330
MH M28 unassigned subfamily M28B unassigned peptidases MER1061525
MH M28 unassigned subfamily M28B unassigned peptidases MER0212218 FCOL_06920
MH M28 unassigned subfamily M28C unassigned peptidases MER1247220
MH M28 unassigned subfamily M28E unassigned peptidases MER1058359
MH M28 unassigned subfamily M28E unassigned peptidases MER1067390
MH M28 unassigned subfamily M28E unassigned peptidases MER0205931 FCOL_10860
MH M28 unassigned subfamily M28F unassigned peptidases MER1255785
MH M28 unassigned subfamily M28F unassigned peptidases MER0282506 FCOL_05780
MH M28 unassigned subfamily M28F unassigned peptidases MER0282061 FCOL_11275
MH M42 unassigned family M42 unassigned peptidases MER0282242 FCOL_07750
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0872096 FCOL_06460
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0282028 hutI FCOL_06770
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0282439 FCOL_13455
MM M50 unassigned family M50 unassigned peptidases MER0892023 FCOL_08295/Osc7112_3435
MO M23 M23.009 Mername-AA292 peptidase MER0282003 FCOL_10810
MO M23 non-peptidase homologue family M23 non-peptidase homologues MER0282482 FCOL_09475
PA S1 unassigned subfamily S1C unassigned peptidases MER0282365 FCOL_04720
PA S1 unassigned subfamily S1C unassigned peptidases MER0282077 FCOL_11365
PA S46 S46.002 dipeptidyl-peptidase 11 (Porphyromonas gingivalis-type) MER0282246 FCOL_03270
PA S46 S46.002 dipeptidyl-peptidase 11 (Porphyromonas gingivalis-type) MER0282040 FCOL_11240
PB C44 non-peptidase homologue family C44 non-peptidase homologues MER0458441 asnB FCOL_06840
PB C44 non-peptidase homologue family C44 non-peptidase homologues MER0282435 glmS FCOL_13425
PB C45 unassigned family C45 unassigned peptidases MER0725652 FCOL_11735
PB S45 S45.003 cephalosporin C acylase precursor MER0282185 FCOL_03445
PB T3 T03.001 gamma-glutamyltransferase 1 (bacterial-type) MER0282004 FCOL_06350
PC C26 C26.955 aminodeoxychorismate synthase, subunit II MER0282398 FCOL_01045
PC C26 C26.957 GMP synthase MER0282137 guaA FCOL_02950
PC C26 C26.964 CTP synthetase MER0447591 pyrG FCOL_02925
PC C26 unassigned family C26 unassigned peptidases MER0282064 carA FCOL_10940
PC C56 C56.972 phosphoribosylformylglycinamidine synthase MER0282515 FCOL_06550
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0282483 FCOL_05755
PC S51 S51.002 alpha-aspartyl dipeptidase (eukaryote) MER0282148 FCOL_03335
SB S8 non-peptidase homologue subfamily S8A non-peptidase homologues MER0968562 FCOL_07585
SB S8 non-peptidase homologue subfamily S8A non-peptidase homologues MER0282200 FCOL_07620
SB S8 unassigned subfamily S8A unassigned peptidases MER0968594 FCOL_03060
SB S8 unassigned subfamily S8A unassigned peptidases MER0971642 FCOL_07985
SB S8 unassigned subfamily S8A unassigned peptidases MER0282535 FCOL_05875
SB S8 unassigned subfamily S8A unassigned peptidases MER0282292 FCOL_13070
SC S9 S09.010 oligopeptidase B MER0282366 FCOL_00985
SC S9 S09.013 dipeptidyl-peptidase 4 (bacteria-type 2) MER0282307 FCOL_04210 FCOL_04210
SC S9 S09.075 dipeptidyl-peptidase 5 (Porphyromonas sp.) MER0046066 FCOL_13430
SC S9 S09.A77 dpf-6 g.p. (Caenorhabditis elegans) MER0282278 FCOL_08560
SC S9 unassigned subfamily S9A unassigned peptidases MER1282779
SC S9 unassigned subfamily S9A unassigned peptidases MER1293652
SC S9 unassigned subfamily S9A unassigned peptidases MER0282437 FCOL_06005
SC S9 unassigned subfamily S9B unassigned peptidases MER1297249
SC S9 unassigned subfamily S9B unassigned peptidases MER0282438 FCOL_01150
SC S28 unassigned family S28 unassigned peptidases MER0309211 FCOL_10775 FCOL_10775
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0282279 FCOL_04480
SC S33 unassigned family S33 unassigned peptidases MER0282211 FCOL_03890
SC S33 unassigned family S33 unassigned peptidases MER0282029 FCOL_06425
SC S37 non-peptidase homologue family S37 non-peptidase homologues MER1344680
SC S37 non-peptidase homologue family S37 non-peptidase homologues MER1344670
SE S12 unassigned family S12 unassigned peptidases MER0420169 FCOL_07130
SE S12 unassigned family S12 unassigned peptidases MER0422073 FCOL_07445
SE S12 unassigned family S12 unassigned peptidases MER0282116 FCOL_11430
SE S12 unassigned family S12 unassigned peptidases MER0282379 FCOL_13260
SF S26 unassigned subfamily S26A unassigned peptidases MER0333877 FCOL_12245
SJ S16 S16.A04 DNA repair protein RadA (Escherichia coli) MER0282415 FCOL_13390
SJ S16 non-peptidase homologue family S16 non-peptidase homologues MER0282479 FCOL_06465
SJ S16 unassigned family S16 unassigned peptidases MER0282247 lon FCOL_00305
SK S14 S14.001 peptidase Clp (type 1) MER0282269 clpP FCOL_04465
SK S41 S41.001 C-terminal processing peptidase-1 MER0282325 FCOL_04260
SK S41 S41.012 Pep putative peptidase (Vibrio-type) MER0282345
SK S41 unassigned subfamily S41A unassigned peptidases MER1348034
SK S41 unassigned subfamily S41A unassigned peptidases MER1348073
SK S41 unassigned subfamily S41A unassigned peptidases MER0282299 FCOL_09030
SK S49 S49.003 protein C (bacteriophage lambda) MER0282356 FCOL_05415
SK S49 unassigned subfamily S49A unassigned peptidases MER1350501
SK S49 unassigned subfamily S49B unassigned peptidases MER0300450 FCOL_04440
SS S66 unassigned family S66 unassigned peptidases MER0282322 FCOL_08335
ST S54 S54.025 At5g25752 rhomboid peptidase MER0282539 FCOL_01765
ST S54 S54.025 At5g25752 rhomboid peptidase MER0282268 FCOL_12265
ST S54 unassigned family S54 unassigned peptidases MER1082965 FCOL_11125
ST S54 unassigned family S54 unassigned peptidases MER0282267 FCOL_12260
U- U32 U32.001 collagenase (Porphyromonas-type) MER0282241 FCOL_08490
U- U32 U32.003 collagenase (Salmonella-type) MER0126574 FCOL_03110

GENOME ANALYSIS: Comparison with 25 completely sequenced genomes from genus Flavobacterium
Family Comment
C1 lineage specific expansion (4 homologues)
C116 significant presence (1 homologues)
C44 significant decrease in homologues (2 homologues)
C45 significant presence (1 homologues)
M4 lineage specific expansion (5 homologues)
M106 significant presence (8 homologues)
M23 significant decrease in homologues (2 homologues)
M43 lineage specific expansion (9 homologues)
M48 lineage specific expansion (4 homologues)
S12 significant decrease in homologues (4 homologues)
S28 significant presence (1 homologues)
S37 significant presence (2 homologues)