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Structure of the translating mammalian ribosome-Sec61 complex

Electron Microscopy
3.9Å resolution
PDB entry 3j7r coloured by chain, front view.
PDB entry 3j7r coloured by chain, side view.
PDB entry 3j7r coloured by chain, top view.
Source organism: Sus scrofa
Assembly composition:
hetero 86-mer (preferred)
Entry contents: 79 distinct polypeptide molecules
7 distinct RNA molecules

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Assemblies

Assembly 1 (preferred)
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Multimeric state: hetero 86-mer
PDBe Complex ID: PDB-CPX-236683

Macromolecules

Ribosomal protein uL2
Chain: A
Length: 257 amino acids
Theoretical weight: 28.09 KDa
Source organism: Sus scrofa
InterPro:
Ribosomal protein uL2 in PDB entry 3j7r, assembly 1, front view.
Ribosomal protein uL2 in PDB entry 3j7r, assembly 1, side view.
Ribosomal protein uL2 in PDB entry 3j7r, assembly 1, top view.
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Ribosomal protein uL3
Chain: B
Length: 394 amino acids
Theoretical weight: 44.76 KDa
Source organism: Sus scrofa
InterPro:
Ribosomal protein uL3 in PDB entry 3j7r, assembly 1, front view.
Ribosomal protein uL3 in PDB entry 3j7r, assembly 1, side view.
Ribosomal protein uL3 in PDB entry 3j7r, assembly 1, top view.
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Large ribosomal subunit protein uL4
Chain: C
Length: 367 amino acids
Theoretical weight: 41.64 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: F1SJJ5 (Residues: 2-353, 354-365; Coverage: 85%)
Gene name: RPL4
Pfam:
InterPro:
Large ribosomal subunit protein uL4 in PDB entry 3j7r, assembly 1, front view.
Large ribosomal subunit protein uL4 in PDB entry 3j7r, assembly 1, side view.
Large ribosomal subunit protein uL4 in PDB entry 3j7r, assembly 1, top view.
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Large ribosomal subunit protein uL18
Chain: D
Length: 297 amino acids
Theoretical weight: 34.42 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A0A287ASD0 (Residues: 1-297; Coverage: 100%)
Gene name: RPL5
Pfam:
InterPro:
Ribosomal protein L5 eukaryotic C-terminal domain-containing protein in PDB entry 3j7r, assembly 1, front view.
Ribosomal protein L5 eukaryotic C-terminal domain-containing protein in PDB entry 3j7r, assembly 1, side view.
Ribosomal protein L5 eukaryotic C-terminal domain-containing protein in PDB entry 3j7r, assembly 1, top view.
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Large ribosomal subunit protein eL6
Chain: E
Length: 236 amino acids
Theoretical weight: 27.05 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: Q2YGT9 (Residues: 38-284; Coverage: 83%)
Gene name: RPL6
Pfam:
InterPro:
Large ribosomal subunit protein eL6 in PDB entry 3j7r, assembly 1, front view.
Large ribosomal subunit protein eL6 in PDB entry 3j7r, assembly 1, side view.
Large ribosomal subunit protein eL6 in PDB entry 3j7r, assembly 1, top view.
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Ribosomal protein uL30
Chain: F
Length: 225 amino acids
Theoretical weight: 26.59 KDa
Source organism: Sus scrofa
InterPro:
Ribosomal protein uL30 in PDB entry 3j7r, assembly 1, front view.
Ribosomal protein uL30 in PDB entry 3j7r, assembly 1, side view.
Ribosomal protein uL30 in PDB entry 3j7r, assembly 1, top view.
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60S ribosomal protein L7a
Chain: G
Length: 266 amino acids
Theoretical weight: 30.17 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A0A4X1W808 (Residues: 35-300; Coverage: 89%)
Pfam: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
InterPro:
60S ribosomal protein L7a in PDB entry 3j7r, assembly 1, front view.
60S ribosomal protein L7a in PDB entry 3j7r, assembly 1, side view.
60S ribosomal protein L7a in PDB entry 3j7r, assembly 1, top view.
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Large ribosomal subunit protein uL6
Chain: H
Length: 192 amino acids
Theoretical weight: 21.9 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: I3LP78 (Residues: 1-192; Coverage: 100%)
Gene name: RPL9
Pfam: Ribosomal protein L6
InterPro:
Large ribosomal subunit protein uL6 in PDB entry 3j7r, assembly 1, front view.
Large ribosomal subunit protein uL6 in PDB entry 3j7r, assembly 1, side view.
Large ribosomal subunit protein uL6 in PDB entry 3j7r, assembly 1, top view.
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Large ribosomal subunit protein uL16
Chain: I
Length: 213 amino acids
Theoretical weight: 24.47 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: Q29195 (Residues: 2-214; Coverage: 100%)
Gene names: QM, RPL10
Pfam: Ribosomal protein L16p/L10e
InterPro:
Large ribosomal subunit protein uL16 in PDB entry 3j7r, assembly 1, front view.
Large ribosomal subunit protein uL16 in PDB entry 3j7r, assembly 1, side view.
Large ribosomal subunit protein uL16 in PDB entry 3j7r, assembly 1, top view.
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Large ribosomal subunit protein uL5
Chain: J
Length: 178 amino acids
Theoretical weight: 20.25 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: Q29205 (Residues: 1-178; Coverage: 100%)
Gene name: RPL11
Pfam:
InterPro:
Large ribosomal subunit protein uL5 in PDB entry 3j7r, assembly 1, front view.
Large ribosomal subunit protein uL5 in PDB entry 3j7r, assembly 1, side view.
Large ribosomal subunit protein uL5 in PDB entry 3j7r, assembly 1, top view.
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60S ribosomal protein L13
Chain: L
Length: 211 amino acids
Theoretical weight: 24.37 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A0A4X1TBV3 (Residues: 218-428; Coverage: 49%)
Gene name: RPL13
Pfam: Ribosomal protein L13e
InterPro:
60S ribosomal protein L13 in PDB entry 3j7r, assembly 1, front view.
60S ribosomal protein L13 in PDB entry 3j7r, assembly 1, side view.
60S ribosomal protein L13 in PDB entry 3j7r, assembly 1, top view.
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Large ribosomal subunit protein eL14
Chain: M
Length: 213 amino acids
Theoretical weight: 23.38 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A1XQU3 (Residues: 1-213; Coverage: 100%)
Gene name: RPL14
Pfam: Ribosomal protein L14
InterPro:
Large ribosomal subunit protein eL14 in PDB entry 3j7r, assembly 1, front view.
Large ribosomal subunit protein eL14 in PDB entry 3j7r, assembly 1, side view.
Large ribosomal subunit protein eL14 in PDB entry 3j7r, assembly 1, top view.
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Ribosomal protein L15
Chain: N
Length: 204 amino acids
Theoretical weight: 24.21 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A0A286ZL65 (Residues: 1-204; Coverage: 100%)
Gene name: RPL15
Pfam: Ribosomal L15
InterPro:
Ribosomal protein L15 in PDB entry 3j7r, assembly 1, front view.
Ribosomal protein L15 in PDB entry 3j7r, assembly 1, side view.
Ribosomal protein L15 in PDB entry 3j7r, assembly 1, top view.
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Ribosomal protein uL13
Chain: O
Length: 201 amino acids
Theoretical weight: 23.44 KDa
Source organism: Sus scrofa
InterPro:
Ribosomal protein uL13 in PDB entry 3j7r, assembly 1, front view.
Ribosomal protein uL13 in PDB entry 3j7r, assembly 1, side view.
Ribosomal protein uL13 in PDB entry 3j7r, assembly 1, top view.
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Large ribosomal subunit protein uL22
Chain: P
Length: 153 amino acids
Theoretical weight: 17.76 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A0A287B386 (Residues: 2-154; Coverage: 82%)
Gene name: RPL17
Pfam: Ribosomal protein L22p/L17e
InterPro:
Large ribosomal subunit protein uL22 in PDB entry 3j7r, assembly 1, front view.
Large ribosomal subunit protein uL22 in PDB entry 3j7r, assembly 1, side view.
Large ribosomal subunit protein uL22 in PDB entry 3j7r, assembly 1, top view.
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Large ribosomal subunit protein uL15/eL18 domain-containing protein
Chain: Q
Length: 188 amino acids
Theoretical weight: 21.59 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A0A4X1W0N5 (Residues: 1-188; Coverage: 100%)
Gene name: RPL18
Pfam: Ribosomal protein 60S L18 and 50S L18e
InterPro:
Ribosomal protein L18 in PDB entry 3j7r, assembly 1, front view.
Ribosomal protein L18 in PDB entry 3j7r, assembly 1, side view.
Ribosomal protein L18 in PDB entry 3j7r, assembly 1, top view.
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Ribosomal protein eL19
Chain: R
Length: 196 amino acids
Theoretical weight: 23.57 KDa
Source organism: Sus scrofa
InterPro:
Ribosomal protein eL19 in PDB entry 3j7r, assembly 1, front view.
Ribosomal protein eL19 in PDB entry 3j7r, assembly 1, side view.
Ribosomal protein eL19 in PDB entry 3j7r, assembly 1, top view.
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Large ribosomal subunit protein eL20
Chain: S
Length: 224 amino acids
Theoretical weight: 26.1 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A0A287APR1 (Residues: 1-224; Coverage: 100%)
Gene name: RPL18A
Pfam: Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A
InterPro:
Ribosomal protein 50S-L18Ae/60S-L20/60S-L18A domain-containing protein in PDB entry 3j7r, assembly 1, front view.
Ribosomal protein 50S-L18Ae/60S-L20/60S-L18A domain-containing protein in PDB entry 3j7r, assembly 1, side view.
Ribosomal protein 50S-L18Ae/60S-L20/60S-L18A domain-containing protein in PDB entry 3j7r, assembly 1, top view.
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Large ribosomal subunit protein eL21
Chain: T
Length: 160 amino acids
Theoretical weight: 18.61 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: P49666 (Residues: 1-160; Coverage: 100%)
Gene name: RPL21
Pfam: Ribosomal protein L21e
InterPro:
Large ribosomal subunit protein eL21 in PDB entry 3j7r, assembly 1, front view.
Large ribosomal subunit protein eL21 in PDB entry 3j7r, assembly 1, side view.
Large ribosomal subunit protein eL21 in PDB entry 3j7r, assembly 1, top view.
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Large ribosomal subunit protein eL22
Chain: U
Length: 128 amino acids
Theoretical weight: 14.78 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: P67985 (Residues: 1-128; Coverage: 100%)
Gene name: RPL22
Pfam: Ribosomal L22e protein family
InterPro:
Large ribosomal subunit protein eL22 in PDB entry 3j7r, assembly 1, front view.
Large ribosomal subunit protein eL22 in PDB entry 3j7r, assembly 1, side view.
Large ribosomal subunit protein eL22 in PDB entry 3j7r, assembly 1, top view.
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Ribosomal protein uL14
Chain: V
Length: 140 amino acids
Theoretical weight: 14.89 KDa
Source organism: Sus scrofa
InterPro:
Ribosomal protein uL14 in PDB entry 3j7r, assembly 1, front view.
Ribosomal protein uL14 in PDB entry 3j7r, assembly 1, side view.
Ribosomal protein uL14 in PDB entry 3j7r, assembly 1, top view.
Molecule details ›

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Large ribosomal subunit protein eL24
Chain: W
Length: 157 amino acids
Theoretical weight: 17.83 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A0A4X1SH42 (Residues: 1-157; Coverage: 100%)
Gene name: RPL24
Pfam: Ribosomal protein L24e
InterPro:
TRASH domain-containing protein in PDB entry 3j7r, assembly 1, front view.
TRASH domain-containing protein in PDB entry 3j7r, assembly 1, side view.
TRASH domain-containing protein in PDB entry 3j7r, assembly 1, top view.
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Ribosomal protein uL23
Chain: X
Length: 156 amino acids
Theoretical weight: 17.74 KDa
Source organism: Sus scrofa
InterPro:
Ribosomal protein uL23 in PDB entry 3j7r, assembly 1, front view.
Ribosomal protein uL23 in PDB entry 3j7r, assembly 1, side view.
Ribosomal protein uL23 in PDB entry 3j7r, assembly 1, top view.
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Large ribosomal subunit protein uL24
Chain: Y
Length: 145 amino acids
Theoretical weight: 17.3 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A0A4X1V977 (Residues: 1-145; Coverage: 100%)
Gene name: RPL26
Pfam:
InterPro:
KOW domain-containing protein in PDB entry 3j7r, assembly 1, front view.
KOW domain-containing protein in PDB entry 3j7r, assembly 1, side view.
KOW domain-containing protein in PDB entry 3j7r, assembly 1, top view.
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Large ribosomal subunit protein eL27
Chain: Z
Length: 136 amino acids
Theoretical weight: 15.84 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A1XQU5 (Residues: 1-136; Coverage: 100%)
Gene name: RPL27
Pfam:
InterPro:
Large ribosomal subunit protein eL27 in PDB entry 3j7r, assembly 1, front view.
Large ribosomal subunit protein eL27 in PDB entry 3j7r, assembly 1, side view.
Large ribosomal subunit protein eL27 in PDB entry 3j7r, assembly 1, top view.
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Large ribosomal subunit protein uL15
Chain: a
Length: 148 amino acids
Theoretical weight: 16.63 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A0A4X1SN08 (Residues: 116-263; Coverage: 56%)
Pfam: Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
InterPro:
Large ribosomal subunit protein uL15 in PDB entry 3j7r, assembly 1, front view.
Large ribosomal subunit protein uL15 in PDB entry 3j7r, assembly 1, side view.
Large ribosomal subunit protein uL15 in PDB entry 3j7r, assembly 1, top view.
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Large ribosomal subunit protein eL29
Chain: b
Length: 160 amino acids
Theoretical weight: 17.55 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: Q95281 (Residues: 1-160; Coverage: 100%)
Gene name: RPL29
Pfam: Ribosomal L29e protein family
InterPro: Large ribosomal subunit protein eL29
Large ribosomal subunit protein eL29 in PDB entry 3j7r, assembly 1, front view.
Large ribosomal subunit protein eL29 in PDB entry 3j7r, assembly 1, side view.
Large ribosomal subunit protein eL29 in PDB entry 3j7r, assembly 1, top view.
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Large ribosomal subunit protein eL30
Chain: c
Length: 115 amino acids
Theoretical weight: 12.81 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A0A4X1TXJ8 (Residues: 1-115; Coverage: 100%)
Gene name: RPL30
Pfam: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
InterPro:
Large ribosomal subunit protein eL30 in PDB entry 3j7r, assembly 1, front view.
Large ribosomal subunit protein eL30 in PDB entry 3j7r, assembly 1, side view.
Large ribosomal subunit protein eL30 in PDB entry 3j7r, assembly 1, top view.
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Large ribosomal subunit protein eL31
Chain: d
Length: 125 amino acids
Theoretical weight: 14.49 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: P62901 (Residues: 1-125; Coverage: 100%)
Gene name: RPL31
Pfam: Ribosomal protein L31e
InterPro:
Large ribosomal subunit protein eL31 in PDB entry 3j7r, assembly 1, front view.
Large ribosomal subunit protein eL31 in PDB entry 3j7r, assembly 1, side view.
Large ribosomal subunit protein eL31 in PDB entry 3j7r, assembly 1, top view.
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Large ribosomal subunit protein eL32
Chain: e
Length: 135 amino acids
Theoretical weight: 15.9 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: Q6QAT0 (Residues: 1-135; Coverage: 100%)
Gene name: RPL32
Pfam: Ribosomal protein L32
InterPro:
Large ribosomal subunit protein eL32 in PDB entry 3j7r, assembly 1, front view.
Large ribosomal subunit protein eL32 in PDB entry 3j7r, assembly 1, side view.
Large ribosomal subunit protein eL32 in PDB entry 3j7r, assembly 1, top view.
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Ribosomal protein eL33
Chain: f
Length: 110 amino acids
Theoretical weight: 12.56 KDa
Source organism: Sus scrofa
InterPro:
Ribosomal protein eL33 in PDB entry 3j7r, assembly 1, front view.
Ribosomal protein eL33 in PDB entry 3j7r, assembly 1, side view.
Ribosomal protein eL33 in PDB entry 3j7r, assembly 1, top view.
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Large ribosomal subunit protein eL34
Chain: g
Length: 117 amino acids
Theoretical weight: 13.33 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: Q29223 (Residues: 1-117; Coverage: 100%)
Gene name: RPL34
Pfam: Ribosomal protein L34e
InterPro:
Large ribosomal subunit protein eL34 in PDB entry 3j7r, assembly 1, front view.
Large ribosomal subunit protein eL34 in PDB entry 3j7r, assembly 1, side view.
Large ribosomal subunit protein eL34 in PDB entry 3j7r, assembly 1, top view.
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Large ribosomal subunit protein uL29
Chain: h
Length: 123 amino acids
Theoretical weight: 14.59 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: Q29361 (Residues: 1-123; Coverage: 100%)
Gene name: RPL35
Pfam: Ribosomal L29 protein
InterPro:
Large ribosomal subunit protein uL29 in PDB entry 3j7r, assembly 1, front view.
Large ribosomal subunit protein uL29 in PDB entry 3j7r, assembly 1, side view.
Large ribosomal subunit protein uL29 in PDB entry 3j7r, assembly 1, top view.
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Ribosomal protein eL36
Chain: i
Length: 105 amino acids
Theoretical weight: 12.29 KDa
Source organism: Sus scrofa
InterPro:
Ribosomal protein eL36 in PDB entry 3j7r, assembly 1, front view.
Ribosomal protein eL36 in PDB entry 3j7r, assembly 1, side view.
Ribosomal protein eL36 in PDB entry 3j7r, assembly 1, top view.
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Ribosomal protein eL37
Chain: j
Length: 86 amino acids
Theoretical weight: 10.1 KDa
Source organism: Sus scrofa
InterPro:
Ribosomal protein eL37 in PDB entry 3j7r, assembly 1, front view.
Ribosomal protein eL37 in PDB entry 3j7r, assembly 1, side view.
Ribosomal protein eL37 in PDB entry 3j7r, assembly 1, top view.
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Large ribosomal subunit protein eL38
Chain: k
Length: 70 amino acids
Theoretical weight: 8.24 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A0A4X1VLH7 (Residues: 1-70; Coverage: 100%)
Pfam: Ribosomal L38e protein family
InterPro:
Ribosomal protein eL38 in PDB entry 3j7r, assembly 1, front view.
Ribosomal protein eL38 in PDB entry 3j7r, assembly 1, side view.
Ribosomal protein eL38 in PDB entry 3j7r, assembly 1, top view.
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Large ribosomal subunit protein eL39
Chain: l
Length: 51 amino acids
Theoretical weight: 6.43 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: K7GP63 (Residues: 1-51; Coverage: 100%)
Gene names: LOC100525679, LOC100623540, RPL39
Pfam: Ribosomal L39 protein
InterPro:
Ribosomal protein eL39 in PDB entry 3j7r, assembly 1, front view.
Ribosomal protein eL39 in PDB entry 3j7r, assembly 1, side view.
Ribosomal protein eL39 in PDB entry 3j7r, assembly 1, top view.
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Ubiquitin-ribosomal protein eL40 fusion protein
Chain: m
Length: 128 amino acids
Theoretical weight: 14.76 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: P63053 (Residues: 1-128; Coverage: 100%)
Gene names: UBA52, UBCEP2
Pfam:
InterPro:
Ubiquitin-ribosomal protein eL40 fusion protein in PDB entry 3j7r, assembly 1, front view.
Ubiquitin-ribosomal protein eL40 fusion protein in PDB entry 3j7r, assembly 1, side view.
Ubiquitin-ribosomal protein eL40 fusion protein in PDB entry 3j7r, assembly 1, top view.
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Ribosomal protein eL41
Chain: n
Length: 25 amino acids
Theoretical weight: 3.47 KDa
Source organism: Sus scrofa
InterPro: Large ribosomal subunit protein eS32
Ribosomal protein eL41 in PDB entry 3j7r, assembly 1, front view.
Ribosomal protein eL41 in PDB entry 3j7r, assembly 1, side view.
Ribosomal protein eL41 in PDB entry 3j7r, assembly 1, top view.
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Ribosomal protein eL42
Chain: o
Length: 106 amino acids
Theoretical weight: 12.48 KDa
Source organism: Sus scrofa
InterPro:
Ribosomal protein eL42 in PDB entry 3j7r, assembly 1, front view.
Ribosomal protein eL42 in PDB entry 3j7r, assembly 1, side view.
Ribosomal protein eL42 in PDB entry 3j7r, assembly 1, top view.
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Ribosomal protein eL43
Chain: p
Length: 91 amino acids
Theoretical weight: 10.17 KDa
Source organism: Sus scrofa
InterPro:
Ribosomal protein eL43 in PDB entry 3j7r, assembly 1, front view.
Ribosomal protein eL43 in PDB entry 3j7r, assembly 1, side view.
Ribosomal protein eL43 in PDB entry 3j7r, assembly 1, top view.
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Ribosomal protein eL28
Chain: r
Length: 125 amino acids
Theoretical weight: 14.3 KDa
Source organism: Sus scrofa
InterPro:
Ribosomal protein eL28 in PDB entry 3j7r, assembly 1, front view.
Ribosomal protein eL28 in PDB entry 3j7r, assembly 1, side view.
Ribosomal protein eL28 in PDB entry 3j7r, assembly 1, top view.
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Ribosomal protein uL1
Chain: z
Length: 217 amino acids
Theoretical weight: 24.88 KDa
Source organism: Sus scrofa
InterPro:
Ribosomal protein uL1 in PDB entry 3j7r, assembly 1, front view.
Ribosomal protein uL1 in PDB entry 3j7r, assembly 1, side view.
Ribosomal protein uL1 in PDB entry 3j7r, assembly 1, top view.
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Protein transport protein Sec61 subunit alpha isoform 1
Chain: 1
Length: 393 amino acids
Theoretical weight: 43.5 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A0A4X1TV07 (Residues: 25-466; Coverage: 83%)
Gene name: SEC61A1
Pfam:
InterPro:
Translocon Sec61/SecY plug domain-containing protein in PDB entry 3j7r, assembly 1, front view.
Translocon Sec61/SecY plug domain-containing protein in PDB entry 3j7r, assembly 1, side view.
Translocon Sec61/SecY plug domain-containing protein in PDB entry 3j7r, assembly 1, top view.
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Sec61 gamma subunit
Chain: 2
Length: 68 amino acids
Theoretical weight: 7.75 KDa
Source organism: Sus scrofa
InterPro:
Sec61 gamma subunit in PDB entry 3j7r, assembly 1, front view.
Sec61 gamma subunit in PDB entry 3j7r, assembly 1, side view.
Sec61 gamma subunit in PDB entry 3j7r, assembly 1, top view.
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Sec61 beta subunit
Chain: 3
Length: 36 amino acids
Theoretical weight: 3.08 KDa
Source organism: Sus scrofa
Sec61 beta subunit in PDB entry 3j7r, assembly 1, front view.
Sec61 beta subunit in PDB entry 3j7r, assembly 1, side view.
Sec61 beta subunit in PDB entry 3j7r, assembly 1, top view.
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Small ribosomal subunit protein uS2
Chain: SA
Length: 295 amino acids
Theoretical weight: 32.96 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: Q4GWZ2 (Residues: 1-295; Coverage: 100%)
Gene names: LAMR1, RPSA
Pfam:
InterPro:
Small ribosomal subunit protein uS2 in PDB entry 3j7r, assembly 1, front view.
Small ribosomal subunit protein uS2 in PDB entry 3j7r, assembly 1, side view.
Small ribosomal subunit protein uS2 in PDB entry 3j7r, assembly 1, top view.
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Small ribosomal subunit protein eS1
Chain: SB
Length: 264 amino acids
Theoretical weight: 29.93 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: B6V8C8 (Residues: 1-264; Coverage: 100%)
Gene name: RPS3A
Pfam: Ribosomal S3Ae family
InterPro:
Small ribosomal subunit protein eS1 in PDB entry 3j7r, assembly 1, front view.
Small ribosomal subunit protein eS1 in PDB entry 3j7r, assembly 1, side view.
Small ribosomal subunit protein eS1 in PDB entry 3j7r, assembly 1, top view.
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Small ribosomal subunit protein uS5
Chain: SC
Length: 218 amino acids
Theoretical weight: 24.09 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: I3LJ87 (Residues: 32-249; Coverage: 82%)
Gene name: RPS2
Pfam:
InterPro:
Small ribosomal subunit protein uS5 in PDB entry 3j7r, assembly 1, front view.
Small ribosomal subunit protein uS5 in PDB entry 3j7r, assembly 1, side view.
Small ribosomal subunit protein uS5 in PDB entry 3j7r, assembly 1, top view.
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Small ribosomal subunit protein uS3
Chain: SD
Length: 243 amino acids
Theoretical weight: 26.73 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: Q0Z8U2 (Residues: 1-243; Coverage: 100%)
Gene name: RPS3
Pfam:
InterPro:
Small ribosomal subunit protein uS3 in PDB entry 3j7r, assembly 1, front view.
Small ribosomal subunit protein uS3 in PDB entry 3j7r, assembly 1, side view.
Small ribosomal subunit protein uS3 in PDB entry 3j7r, assembly 1, top view.
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40S ribosomal protein S4
Chain: SE
Length: 263 amino acids
Theoretical weight: 29.65 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A0A287B771 (Residues: 1-263; Coverage: 100%)
Gene name: RPS4X
Pfam:
InterPro:
Ribosomal protein eS4 in PDB entry 3j7r, assembly 1, front view.
Ribosomal protein eS4 in PDB entry 3j7r, assembly 1, side view.
Ribosomal protein eS4 in PDB entry 3j7r, assembly 1, top view.
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Small ribosomal subunit protein uS7
Chain: SF
Length: 204 amino acids
Theoretical weight: 22.91 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: F2Z5E6 (Residues: 1-204; Coverage: 100%)
Gene name: RPS5
Pfam: Ribosomal protein S7p/S5e
InterPro:
Ribosomal protein S7 domain-containing protein in PDB entry 3j7r, assembly 1, front view.
Ribosomal protein S7 domain-containing protein in PDB entry 3j7r, assembly 1, side view.
Ribosomal protein S7 domain-containing protein in PDB entry 3j7r, assembly 1, top view.
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Ribosomal protein eS6
Chain: SG
Length: 249 amino acids
Theoretical weight: 28.75 KDa
Source organism: Sus scrofa
InterPro:
Ribosomal protein eS6 in PDB entry 3j7r, assembly 1, front view.
Ribosomal protein eS6 in PDB entry 3j7r, assembly 1, side view.
Ribosomal protein eS6 in PDB entry 3j7r, assembly 1, top view.
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40S ribosomal protein S7
Chain: SH
Length: 194 amino acids
Theoretical weight: 22.17 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A0A287A9Y6 (Residues: 1-194; Coverage: 100%)
Gene name: RPS7
Pfam: Ribosomal protein S7e
InterPro:
40S ribosomal protein S7 in PDB entry 3j7r, assembly 1, front view.
40S ribosomal protein S7 in PDB entry 3j7r, assembly 1, side view.
40S ribosomal protein S7 in PDB entry 3j7r, assembly 1, top view.
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Ribosomal protein eS8
Chain: SI
Length: 208 amino acids
Theoretical weight: 24.26 KDa
Source organism: Sus scrofa
InterPro:
Ribosomal protein eS8 in PDB entry 3j7r, assembly 1, front view.
Ribosomal protein eS8 in PDB entry 3j7r, assembly 1, side view.
Ribosomal protein eS8 in PDB entry 3j7r, assembly 1, top view.
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Ribosomal protein uS4
Chain: SJ
Length: 194 amino acids
Theoretical weight: 22.64 KDa
Source organism: Sus scrofa
InterPro:
Ribosomal protein uS4 in PDB entry 3j7r, assembly 1, front view.
Ribosomal protein uS4 in PDB entry 3j7r, assembly 1, side view.
Ribosomal protein uS4 in PDB entry 3j7r, assembly 1, top view.
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Ribosomal protein eS10
Chain: SK
Length: 165 amino acids
Theoretical weight: 18.97 KDa
Source organism: Sus scrofa
InterPro:
Ribosomal protein eS10 in PDB entry 3j7r, assembly 1, front view.
Ribosomal protein eS10 in PDB entry 3j7r, assembly 1, side view.
Ribosomal protein eS10 in PDB entry 3j7r, assembly 1, top view.
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Ribosomal protein uS17
Chain: SL
Length: 158 amino acids
Theoretical weight: 18.47 KDa
Source organism: Sus scrofa
InterPro:
Ribosomal protein uS17 in PDB entry 3j7r, assembly 1, front view.
Ribosomal protein uS17 in PDB entry 3j7r, assembly 1, side view.
Ribosomal protein uS17 in PDB entry 3j7r, assembly 1, top view.
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Small ribosomal subunit protein eS12
Chain: SM
Length: 124 amino acids
Theoretical weight: 13.78 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: P46405 (Residues: 9-132; Coverage: 94%)
Gene name: RPS12
Pfam: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
InterPro:
Small ribosomal subunit protein eS12 in PDB entry 3j7r, assembly 1, front view.
Small ribosomal subunit protein eS12 in PDB entry 3j7r, assembly 1, side view.
Small ribosomal subunit protein eS12 in PDB entry 3j7r, assembly 1, top view.
Molecule details ›

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Small ribosomal subunit protein uS15
Chain: SN
Length: 151 amino acids
Theoretical weight: 17.26 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A0A4X1TFR5 (Residues: 63-213; Coverage: 71%)
Gene name: RPS13
Pfam:
InterPro:
Ribosomal protein uS15 in PDB entry 3j7r, assembly 1, front view.
Ribosomal protein uS15 in PDB entry 3j7r, assembly 1, side view.
Ribosomal protein uS15 in PDB entry 3j7r, assembly 1, top view.
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Ribosomal protein uS11
Chain: SO
Length: 151 amino acids
Theoretical weight: 16.3 KDa
Source organism: Sus scrofa
InterPro:
Ribosomal protein uS11 in PDB entry 3j7r, assembly 1, front view.
Ribosomal protein uS11 in PDB entry 3j7r, assembly 1, side view.
Ribosomal protein uS11 in PDB entry 3j7r, assembly 1, top view.
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Small ribosomal subunit protein uS19
Chain: SP
Length: 145 amino acids
Theoretical weight: 17.08 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: P62844 (Residues: 1-145; Coverage: 100%)
Gene names: RIG, RPS15
Pfam: Ribosomal protein S19
InterPro:
Small ribosomal subunit protein uS19 in PDB entry 3j7r, assembly 1, front view.
Small ribosomal subunit protein uS19 in PDB entry 3j7r, assembly 1, side view.
Small ribosomal subunit protein uS19 in PDB entry 3j7r, assembly 1, top view.
Molecule details ›

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Small ribosomal subunit protein uS9
Chain: SQ
Length: 146 amino acids
Theoretical weight: 16.48 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: Q29201 (Residues: 1-146; Coverage: 100%)
Gene name: RPS16
Pfam: Ribosomal protein S9/S16
InterPro:
Small ribosomal subunit protein uS9 in PDB entry 3j7r, assembly 1, front view.
Small ribosomal subunit protein uS9 in PDB entry 3j7r, assembly 1, side view.
Small ribosomal subunit protein uS9 in PDB entry 3j7r, assembly 1, top view.
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Small ribosomal subunit protein eS17
Chain: SR
Length: 135 amino acids
Theoretical weight: 15.55 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: Q6QAP7 (Residues: 1-135; Coverage: 100%)
Gene name: RPS17
Pfam: Ribosomal S17
InterPro:
Small ribosomal subunit protein eS17 in PDB entry 3j7r, assembly 1, front view.
Small ribosomal subunit protein eS17 in PDB entry 3j7r, assembly 1, side view.
Small ribosomal subunit protein eS17 in PDB entry 3j7r, assembly 1, top view.
Molecule details ›

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Small ribosomal subunit protein uS13
Chain: SS
Length: 152 amino acids
Theoretical weight: 17.76 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: P62272 (Residues: 1-152; Coverage: 100%)
Gene name: RPS18
Pfam: Ribosomal protein S13/S18
InterPro:
Small ribosomal subunit protein uS13 in PDB entry 3j7r, assembly 1, front view.
Small ribosomal subunit protein uS13 in PDB entry 3j7r, assembly 1, side view.
Small ribosomal subunit protein uS13 in PDB entry 3j7r, assembly 1, top view.
Molecule details ›

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Small ribosomal subunit protein eS19
Chain: ST
Length: 145 amino acids
Theoretical weight: 16.09 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A0A4X1SDD8 (Residues: 106-250; Coverage: 58%)
Pfam: Ribosomal protein S19e
InterPro:
Small ribosomal subunit protein eS19 in PDB entry 3j7r, assembly 1, front view.
Small ribosomal subunit protein eS19 in PDB entry 3j7r, assembly 1, side view.
Small ribosomal subunit protein eS19 in PDB entry 3j7r, assembly 1, top view.
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Small ribosomal subunit protein uS10
Chain: SU
Length: 119 amino acids
Theoretical weight: 13.36 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A1XQU9 (Residues: 1-119; Coverage: 100%)
Gene name: RPS20
Pfam: Ribosomal protein S10p/S20e
InterPro:
Small ribosomal subunit protein uS10 in PDB entry 3j7r, assembly 1, front view.
Small ribosomal subunit protein uS10 in PDB entry 3j7r, assembly 1, side view.
Small ribosomal subunit protein uS10 in PDB entry 3j7r, assembly 1, top view.
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Small ribosomal subunit protein eS21
Chain: SV
Length: 83 amino acids
Theoretical weight: 9.12 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: P63221 (Residues: 1-83; Coverage: 100%)
Gene name: RPS21
Pfam: Ribosomal protein S21e
InterPro:
Small ribosomal subunit protein eS21 in PDB entry 3j7r, assembly 1, front view.
Small ribosomal subunit protein eS21 in PDB entry 3j7r, assembly 1, side view.
Small ribosomal subunit protein eS21 in PDB entry 3j7r, assembly 1, top view.
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Ribosomal protein uS8
Chain: SW
Length: 130 amino acids
Theoretical weight: 14.87 KDa
Source organism: Sus scrofa
InterPro:
Ribosomal protein uS8 in PDB entry 3j7r, assembly 1, front view.
Ribosomal protein uS8 in PDB entry 3j7r, assembly 1, side view.
Ribosomal protein uS8 in PDB entry 3j7r, assembly 1, top view.
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Small ribosomal subunit protein uS12
Chain: SX
Length: 143 amino acids
Theoretical weight: 15.85 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: Q6SA96 (Residues: 1-143; Coverage: 100%)
Gene name: RPS23
Pfam: Ribosomal protein S12/S23
InterPro:
Small ribosomal subunit protein uS12 in PDB entry 3j7r, assembly 1, front view.
Small ribosomal subunit protein uS12 in PDB entry 3j7r, assembly 1, side view.
Small ribosomal subunit protein uS12 in PDB entry 3j7r, assembly 1, top view.
Molecule details ›

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40S ribosomal protein S24
Chain: SY
Length: 132 amino acids
Theoretical weight: 15.37 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A0A4X1SJK8 (Residues: 1-132; Coverage: 100%)
Gene name: RPS24
Pfam: Ribosomal protein S24e
InterPro:
40S ribosomal protein S24 in PDB entry 3j7r, assembly 1, front view.
40S ribosomal protein S24 in PDB entry 3j7r, assembly 1, side view.
40S ribosomal protein S24 in PDB entry 3j7r, assembly 1, top view.
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Ribosomal protein es25
Chain: SZ
Length: 125 amino acids
Theoretical weight: 13.78 KDa
Source organism: Sus scrofa
InterPro:
Ribosomal protein es25 in PDB entry 3j7r, assembly 1, front view.
Ribosomal protein es25 in PDB entry 3j7r, assembly 1, side view.
Ribosomal protein es25 in PDB entry 3j7r, assembly 1, top view.
Molecule details ›

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Small ribosomal subunit protein eS26
Chain: Sa
Length: 115 amino acids
Theoretical weight: 13.05 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: P49171 (Residues: 1-115; Coverage: 100%)
Gene name: RPS26
Pfam: Ribosomal protein S26e
InterPro:
Small ribosomal subunit protein eS26 in PDB entry 3j7r, assembly 1, front view.
Small ribosomal subunit protein eS26 in PDB entry 3j7r, assembly 1, side view.
Small ribosomal subunit protein eS26 in PDB entry 3j7r, assembly 1, top view.
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40S ribosomal protein S27
Chain: Sb
Length: 84 amino acids
Theoretical weight: 9.48 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A0A4X1W2B6 (Residues: 1-84; Coverage: 100%)
Gene name: RPS27
Pfam: Ribosomal protein S27
InterPro:
Ribosomal protein eS27 in PDB entry 3j7r, assembly 1, front view.
Ribosomal protein eS27 in PDB entry 3j7r, assembly 1, side view.
Ribosomal protein eS27 in PDB entry 3j7r, assembly 1, top view.
Molecule details ›

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Small ribosomal subunit protein eS28
Chain: Sc
Length: 69 amino acids
Theoretical weight: 7.86 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: Q6QAT1 (Residues: 1-69; Coverage: 100%)
Gene name: RPS28
Pfam: Ribosomal protein S28e
InterPro:
Small ribosomal subunit protein eS28 in PDB entry 3j7r, assembly 1, front view.
Small ribosomal subunit protein eS28 in PDB entry 3j7r, assembly 1, side view.
Small ribosomal subunit protein eS28 in PDB entry 3j7r, assembly 1, top view.
Molecule details ›

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Small ribosomal subunit protein uS14
Chain: Sd
Length: 56 amino acids
Theoretical weight: 6.61 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: Q6QAP6 (Residues: 1-56; Coverage: 100%)
Gene name: RPS29
Pfam: Ribosomal protein S14p/S29e
InterPro:
Small ribosomal subunit protein uS14 in PDB entry 3j7r, assembly 1, front view.
Small ribosomal subunit protein uS14 in PDB entry 3j7r, assembly 1, side view.
Small ribosomal subunit protein uS14 in PDB entry 3j7r, assembly 1, top view.
Molecule details ›

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Ribosomal protein eS30
Chain: Se
Length: 133 amino acids
Theoretical weight: 14.41 KDa
Source organism: Sus scrofa
InterPro:
Ribosomal protein eS30 in PDB entry 3j7r, assembly 1, front view.
Ribosomal protein eS30 in PDB entry 3j7r, assembly 1, side view.
Ribosomal protein eS30 in PDB entry 3j7r, assembly 1, top view.
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Ubiquitin-ribosomal protein eS31 fusion protein
Chain: Sf
Length: 156 amino acids
Theoretical weight: 18 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A0A4X1W6H9 (Residues: 49-204; Coverage: 77%)
Gene name: RPS27A
Pfam:
InterPro:
Ubiquitin-ribosomal protein eS31 fusion protein in PDB entry 3j7r, assembly 1, front view.
Ubiquitin-ribosomal protein eS31 fusion protein in PDB entry 3j7r, assembly 1, side view.
Ubiquitin-ribosomal protein eS31 fusion protein in PDB entry 3j7r, assembly 1, top view.
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Small ribosomal subunit protein RACK1
Chain: Sg
Length: 317 amino acids
Theoretical weight: 35.12 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: P63246 (Residues: 1-317; Coverage: 100%)
Gene names: GNB2L1, RACK1
Pfam: WD domain, G-beta repeat
InterPro:
Small ribosomal subunit protein RACK1 in PDB entry 3j7r, assembly 1, front view.
Small ribosomal subunit protein RACK1 in PDB entry 3j7r, assembly 1, side view.
Small ribosomal subunit protein RACK1 in PDB entry 3j7r, assembly 1, top view.
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RNA chain 5
Name: 28S ribosomal RNA
Representative chains: 5
Length: 3722 nucleotides
Theoretical weight: 1206.1 KDa
Rfam: Eukaryotic large subunit ribosomal RNA
28S ribosomal RNA in PDB entry 3j7r, assembly 1, front view.
28S ribosomal RNA in PDB entry 3j7r, assembly 1, side view.
28S ribosomal RNA in PDB entry 3j7r, assembly 1, top view.
Molecule details ›

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RNA chain 7
Name: 5S ribosomal RNA
Representative chains: 7
Length: 120 nucleotides
Theoretical weight: 38.69 KDa
Rfam: 5S ribosomal RNA
5S ribosomal RNA in PDB entry 3j7r, assembly 1, front view.
5S ribosomal RNA in PDB entry 3j7r, assembly 1, side view.
5S ribosomal RNA in PDB entry 3j7r, assembly 1, top view.
Molecule details ›

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RNA chain 8
Name: 5.8S ribosomal RNA
Representative chains: 8
Length: 156 nucleotides
Theoretical weight: 50.14 KDa
Rfam: 5.8S ribosomal RNA
5.8S ribosomal RNA in PDB entry 3j7r, assembly 1, front view.
5.8S ribosomal RNA in PDB entry 3j7r, assembly 1, side view.
5.8S ribosomal RNA in PDB entry 3j7r, assembly 1, top view.
Molecule details ›

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RNA chain S2
Name: 18S Ribosomal RNA
Representative chains: S2
Length: 1742 nucleotides
Theoretical weight: 561.96 KDa
Rfam: Eukaryotic small subunit ribosomal RNA
18S Ribosomal RNA in PDB entry 3j7r, assembly 1, front view.
18S Ribosomal RNA in PDB entry 3j7r, assembly 1, side view.
18S Ribosomal RNA in PDB entry 3j7r, assembly 1, top view.
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RNA chain S4
Name: Messenger RNA
Representative chains: S4
Length: 10 nucleotides
Theoretical weight: 3.04 KDa
Messenger RNA in PDB entry 3j7r, assembly 1, front view.
Messenger RNA in PDB entry 3j7r, assembly 1, side view.
Messenger RNA in PDB entry 3j7r, assembly 1, top view.
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RNA chain S5
Name: A/P tRNA
Representative chains: S5
Length: 74 nucleotides
Theoretical weight: 23.87 KDa
Rfam: tRNA
A/P tRNA in PDB entry 3j7r, assembly 1, front view.
A/P tRNA in PDB entry 3j7r, assembly 1, side view.
A/P tRNA in PDB entry 3j7r, assembly 1, top view.
Molecule details ›

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RNA chain S6
Name: P/E tRNA
Representative chains: S6
Length: 76 nucleotides
Theoretical weight: 24.48 KDa
Rfam: tRNA
P/E tRNA in PDB entry 3j7r, assembly 1, front view.
P/E tRNA in PDB entry 3j7r, assembly 1, side view.
P/E tRNA in PDB entry 3j7r, assembly 1, top view.
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