Structure for peptidase C25.003: gingipain RgpB

Summary Alignment Sequences Sequence features Distribution Structure Literature Substrates

 

PDB Organism Resolution Comment
1CVR_A Porphyromonas gingivalis 2.00 Å Complex with D-Phe-Phe-Arg-chloromethylketone inhibitor
Catalytic residues are shown in ball-and-stick representation: His440 in purple and Cys473 in yellow. The inhibitor D-Phe-Phe-Arg-chloromethane is shown in grey in ball-and-stick representation. The structural zinc ions are shown as light grey CPK spheres and the structural calcium ions as yellow CPK spheres.
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TERTIARY STRUCTURE DATA
Comment Resolution PDB PDBe SCOP CATH PDBSum Proteopedia Reference
Porphyromonas gingivalis
Complex with D-Phe-Phe-Arg-chloromethylketone inhibitor 2.00 Å 1CVR 1CVR 1CVR 1CVR 1CVR 1CVR Eichinger et al., 1999
mature  peptidase 2.30 Å 4IEF 4IEF 4IEF 4IEF 4IEF 4IEF de Diego et al., 2013