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Novosphingobium nitrogenifigens

Taxonomy
Taxonomy database identifier: 378548
Superkingdom Bacteria
Phylum Proteobacteria
Class Alphaproteobacteria
Order Rhodospirillales
Family Sphingomonadaceae
Genus Novosphingobium
Species nitrogenifigens
Peptidase View peptidase sequences from Novosphingobium nitrogenifigens
Count of known and putative peptidases: 53, non-peptidase homologues 9
Completely sequences genomes from subspecies and strains Protein coding genes

To show all strains with completely sequenced genomes, click here.

Clan Family MEROPS ID Peptidase or homologue (subtype) MERNUM Gene Link Locus Megabases
AA A28 unassigned subfamily A28A unassigned peptidases MER0427718
AA A32 unassigned family A32 unassigned peptidases MER0241932 Y88_1893
AA A32 unassigned family A32 unassigned peptidases MER0241704 Y88_2012
AC A8 unassigned family A8 unassigned peptidases MER0324621
AD A24 unassigned subfamily A24B unassigned peptidases MER0679440 Y88_3610
AE A31 A31.002 HyaD peptidase MER0231714 Y88_2751
CL C82 C82.A01 LdtF protein (Escherichia coli) MER0462433
CL C82 unassigned subfamily C82A unassigned peptidases MER0463843
G- G5 unassigned family G5 unassigned peptidases MER0912568 Y88_3141
GC G4 non-peptidase homologue family G4 non-peptidase homologues MER0320551
GC G4 non-peptidase homologue family G4 non-peptidase homologues MER0302824
MA M1 M01.005 alanyl aminopeptidase (bacterial-type) MER0335212 Y88_2179
MA M1 unassigned family M1 unassigned peptidases MER0334678 Y88_2971
MA M10 unassigned subfamily M10B unassigned peptidases MER0291246 Y88_0682
MA M13 unassigned family M13 unassigned peptidases MER0338733 Y88_2994
MA M13 unassigned family M13 unassigned peptidases MER0289177 Y88_3755
MA M41 M41.001 FtsH peptidase MER0300826
MA M48 unassigned subfamily M48C unassigned peptidases MER0888343 Y88_2793
MA M61 M61.001 glycyl aminopeptidase MER0280612 Y88_2483
MA M78 unassigned family M78 unassigned peptidases MER0909110 Y88_2882
MC M14 non-peptidase homologue subfamily M14D non-peptidase homologues MER0309103 Y88_2171
MD M15 unassigned subfamily M15C unassigned peptidases MER0469764
MD M15 unassigned subfamily M15D unassigned peptidases MER0312524 Y88_1783
ME M16 non-peptidase homologue subfamily M16B non-peptidase homologues MER0392452 Y88_3239
ME M16 unassigned subfamily M16B unassigned peptidases MER0390383 Y88_2608
ME M16 unassigned subfamily M16B unassigned peptidases MER0392600 Y88_3708
MF M17 M17.003 PepA aminopeptidase MER0340027 pepA Y88_2641
MF M17 unassigned family M17 unassigned peptidases MER0340625 Y88_3642
MG M24 M24.001 methionyl aminopeptidase 1 (Escherichia-type) MER0394015 map Y88_3641
MG M24 M24.009 aminopeptidase P1 MER0482373
MG M24 unassigned subfamily M24B unassigned peptidases MER0482374
MH M20 non-peptidase homologue family M20 non-peptidase homologues MER0845275 Y88_2437
MH M20 unassigned subfamily M20A unassigned peptidases MER0842269 dapE
MH M20 unassigned subfamily M20A unassigned peptidases MER1221649
MH M20 unassigned family M20D unassigned peptidases MER0371646 Y88_1027
MH M20 unassigned family M20D unassigned peptidases MER0373743 Y88_0353
MH M20 unassigned family M20 unassigned peptidases MER0473831 Y88_1951
MH M20 unassigned family M20 unassigned peptidases MER0302830 Y88_2630
MH M20 unassigned family M20 unassigned peptidases MER0369634 Y88_0297
MH M28 unassigned subfamily M28E unassigned peptidases MER0195448 Y88_0073
MH M28 unassigned subfamily M28E unassigned peptidases MER0322077 Y88_0688
MJ M19 M19.012 Caul_3875-type dipeptidase MER0341470 Y88_0501
MJ M38 M38.982 urease MER0871125 ureC
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0871434 Y88_2329
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0867190 Y88_1308
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0874025 hutI
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0866901 Y88_3309
MM M50 non-peptidase homologue subfamily M50B non-peptidase homologues MER0891564 Y88_0406
MM M50 unassigned family M50 unassigned peptidases MER0896679 Y88_3038
MO M23 M23.009 Mername-AA292 peptidase MER0277016 Y88_1807
MO M23 M23.009 Mername-AA292 peptidase MER0386902 Y88_2099
MO M23 M23.009 Mername-AA292 peptidase MER0387780 Y88_3543
MO M23 non-peptidase homologue subfamily M23B non-peptidase homologues MER0389078 Y88_2406
MO M23 unassigned subfamily M23B unassigned peptidases MER0478200
MO M23 unassigned subfamily M23B unassigned peptidases MER0388468 Y88_2110
MP M67 unassigned subfamily M67B unassigned peptidases MER0907328 Y88_1539
MU M103 M103.UNW family M103 non-peptidase homologues MER0245459 Y88_2487
PA S1 unassigned subfamily S1B unassigned peptidases MER0966377 Y88_3283
PA S1 unassigned subfamily S1C unassigned peptidases MER0244219 Y88_1911
PA S1 unassigned subfamily S1C unassigned peptidases MER0488697
PB C44 C44.001 amidophosphoribosyltransferase precursor MER0456579
PB C44 non-peptidase homologue family C44 non-peptidase homologues MER0456580
PB C44 unassigned family C44 unassigned peptidases MER0459729
PB S45 S45.002 cephalosporin acylase precursor MER0312264 Y88_3738
PB S45 S45.003 cephalosporin C acylase precursor MER0312044 Y88_1324
PB T1 T01.006 HslV component of HslUV peptidase MER0485060
PB T2 unassigned family T2 unassigned peptidases MER1095244 Y88_2216
PB T3 T03.001 gamma-glutamyltransferase 1 (bacterial-type) MER0307201 Y88_2842
PB T3 T03.001 gamma-glutamyltransferase 1 (bacterial-type) MER0378973 Y88_2501
PB T3 T03.025 oxamate amidohydrolase proenzyme (Klebsiella pneumonia) MER0379599 Y88_2438
PB T3 T03.025 oxamate amidohydrolase proenzyme (Klebsiella pneumonia) MER0379056 Y88_0392
PC C26 C26.955 aminodeoxychorismate synthase, subunit II MER0438531
PC C26 C26.957 GMP synthase MER0442936
PC C26 C26.964 CTP synthetase MER0451049
PC C26 C26.965 imidazole glycerol phosphate synthase subunit HisH MER0447506
PC C26 unassigned family C26 unassigned peptidases MER0450272
PC C26 unassigned family C26 unassigned peptidases MER0443434
PC C26 unassigned family C26 unassigned peptidases MER0449297
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0386034 Y88_0421
PE T5 T05.001 ornithine acetyltransferase precursor MER0307615 argJ Y88_0735
SB S8 non-peptidase homologue subfamily S8A non-peptidase homologues MER0984018 Y88_1291
SB S8 unassigned subfamily S8A unassigned peptidases MER0980667 Y88_1969
SB S8 unassigned subfamily S8A unassigned peptidases MER0988401 Y88_2466
SC S9 S09.009 dipeptidyl-peptidase 4 (bacteria-type 1) MER0999431 Y88_3063
SC S9 S09.010 oligopeptidase B MER0489994
SC S9 unassigned subfamily S9A unassigned peptidases MER1294697
SC S9 unassigned subfamily S9A unassigned peptidases MER1294517
SC S9 unassigned subfamily S9A unassigned peptidases MER0325909
SC S9 unassigned subfamily S9A unassigned peptidases MER0325896
SC S9 unassigned subfamily S9B unassigned peptidases MER0996661 Y88_2443
SC S9 unassigned family S9 unassigned peptidases MER0478698 Y88_3135
SC S10 unassigned family S10 unassigned peptidases MER0490520
SC S15 non-peptidase homologue family S15 non-peptidase homologues MER1025143 Y88_3458
SC S15 non-peptidase homologue family S15 non-peptidase homologues MER1026932 Y88_0147
SC S15 non-peptidase homologue family S15 non-peptidase homologues MER1021391 Y88_0124
SC S15 non-peptidase homologue family S15 non-peptidase homologues MER1021078 Y88_3714
SC S15 unassigned family S15 unassigned peptidases MER1020391 Y88_3295
SC S33 S33.001 prolyl aminopeptidase MER0307969 Y88_0256
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0381569 Y88_0141
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0381656 Y88_3161
SE S11 unassigned family S11 unassigned peptidases MER0351452 Y88_0673
SE S12 unassigned family S12 unassigned peptidases MER0278889 Y88_0676
SE S12 unassigned family S12 unassigned peptidases MER0989474 Y88_2126
SE S12 unassigned family S12 unassigned peptidases MER1007155 Y88_2581
SE S12 unassigned family S12 unassigned peptidases MER1028202 Y88_0772
SE S12 unassigned family S12 unassigned peptidases MER1004687 Y88_0581
SE S12 unassigned family S12 unassigned peptidases MER0353693 Y88_2402
SE S12 unassigned family S12 unassigned peptidases MER0356083 Y88_2525
SE S12 unassigned family S12 unassigned peptidases MER0354753 Y88_3060
SE S12 unassigned family S12 unassigned peptidases MER0355230 Y88_3566
SF S24 S24.001 repressor LexA MER0375648 lexA Y88_0798
SF S24 unassigned family S24 unassigned peptidases MER1043850 Y88_1044
SF S26 S26.001 signal peptidase I MER0333381 Y88_2537
SF S26 S26.001 signal peptidase I MER0246984 Y88_0592
SF S26 unassigned subfamily S26A unassigned peptidases MER1336429
SH S73 unassigned family S73 unassigned peptidases MER0322611
SJ S16 S16.001 Lon-A peptidase MER0299839
SJ S16 S16.A04 DNA repair protein RadA (Escherichia coli) MER0474967
SK S14 S14.001 peptidase Clp (type 1) MER0358054 clpP Y88_1545
SK S41 S41.004 C-terminal processing peptidase-3 MER0288668 Y88_2116
SK S49 unassigned family S49 unassigned peptidases MER0298890 Y88_1547
SS S66 unassigned family S66 unassigned peptidases MER0399179

GENOME ANALYSIS: Comparison with 11 completely sequenced genomes from genus Novosphingobium
Family Comment
A31 significant presence (1 homologues)
A32 significant presence (2 homologues)
C44 significant decrease in homologues (3 homologues)
C56 significant presence (1 homologues)
C82 significant decrease in homologues (2 homologues)
G5 significant presence (1 homologues)
M1 significant presence (2 homologues)
M10 significant presence (1 homologues)
M103 significant decrease in homologues (1 homologues)
M13 significant presence (2 homologues)
M15 significant presence (2 homologues)
M19 significant decrease in homologues (1 homologues)
M28 significant decrease in homologues (2 homologues)
M48 significant decrease in homologues (1 homologues)
S10 significant presence (1 homologues)
S11 significant decrease in homologues (1 homologues)
S12 lineage specific expansion (9 homologues)
S15 lineage specific expansion (5 homologues)
S26 significant decrease in homologues (3 homologues)
S33 significant decrease in homologues (3 homologues)
S45 significant presence (2 homologues)
S49 significant decrease in homologues (1 homologues)
S73 significant presence (1 homologues)
T1 significant decrease in homologues (1 homologues)
T2 significant presence (1 homologues)

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