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Pseudoalteromonas atlantica

Taxonomy
Taxonomy database identifier: 288
Superkingdom Bacteria
Phylum Proteobacteria
Class Gammaproteobacteria
Order Alteromonadales
Family Pseudoalteromonadaceae
Genus Pseudoalteromonas
Species atlantica
Peptidase View peptidase sequences from Pseudoalteromonas atlantica
Count of known and putative peptidases: 107, non-peptidase homologues 28
Completely sequences genomes from subspecies and strains Protein coding genes

To show all strains with completely sequenced genomes, click here.

Clan Family MEROPS ID Peptidase or homologue (subtype) MERNUM Gene Link Locus Megabases
A- A39 unassigned family A39 unassigned peptidases MER1377876
AA A32 unassigned family A32 unassigned peptidases MER0241922 Patl_3346
AA A32 unassigned family A32 unassigned peptidases MER0241911 Patl_3391
AC A8 unassigned family A8 unassigned peptidases MER0055842 lspA Patl_3177
AD A24 A24.001 type 4 prepilin peptidase 1 MER0055816 Patl_3342
CA C39 unassigned family C39 unassigned peptidases MER0055828 Patl_2316
CA C93 unassigned family C93 unassigned peptidases MER0393892 Patl_1080
CA C93 unassigned family C93 unassigned peptidases MER0393703 Patl_2663
CL C60 unassigned subfamily C60A unassigned peptidases MER0055859 Patl_3923
CO C40 unassigned family C40 unassigned peptidases MER0378260 Patl_4171
G- G5 unassigned family G5 unassigned peptidases MER0935626 Patl_1496
MA M1 M01.005 alanyl aminopeptidase (bacterial-type) MER0055831 Patl_1996
MA M1 M01.031 cold-active aminopeptidase (Colwellia psychrerythraea)-type peptidase MER0055875 Patl_3111
MA M1 unassigned family M1 unassigned peptidases MER0080479 Patl_4270
MA M1 unassigned family M1 unassigned peptidases MER0055824 Patl_1912
MA M3 M03.004 oligopeptidase A MER0064804 Patl_4207
MA M3 M03.004 oligopeptidase A MER1187397
MA M3 unassigned subfamily M3A unassigned peptidases MER0064795 Patl_2786
MA M3 unassigned subfamily M3A unassigned peptidases MER0064788 Patl_1586
MA M12 unassigned subfamily M12A unassigned peptidases MER0827858 Patl_0499
MA M12 unassigned subfamily M12B unassigned peptidases MER0242554 Patl_0505
MA M13 unassigned family M13 unassigned peptidases MER0064799 Patl_3353
MA M13 unassigned family M13 unassigned peptidases MER1227122
MA M41 M41.001 FtsH peptidase MER0055819 ftsH Patl_1571
MA M48 M48.002 HtpX peptidase MER0055840 htpX Patl_0373
MA M48 M48.023 BepA (Escherichia coli) MER0055825 Patl_2482
MA M48 unassigned subfamily M48C unassigned peptidases MER0055867 Patl_3332
MA M48 unassigned family M48 unassigned peptidases MER0055843 Patl_2917
MA M61 unassigned family M61 unassigned peptidases MER0055822 Patl_2389
MA M90 unassigned family M90 unassigned peptidases MER0286888 Patl_0929
MC M14 non-peptidase homologue subfamily M14A non-peptidase homologues MER0080475 Patl_1827
MC M14 non-peptidase homologue subfamily M14D non-peptidase homologues MER0055877 Patl_1641
MC M14 non-peptidase homologue family M14 non-peptidase homologues MER0080478 Patl_4232
MC M14 unassigned subfamily M14D unassigned peptidases MER0055862 Patl_1519
ME M16 non-peptidase homologue family M16 non-peptidase homologues MER0055865 Patl_1365
ME M16 unassigned subfamily M16A unassigned peptidases MER0055878 Patl_1666
ME M16 unassigned subfamily M16A unassigned peptidases MER0651551
ME M16 unassigned subfamily M16B unassigned peptidases MER0055866 Patl_1365
MF M17 M17.003 PepA aminopeptidase MER0064802 pepA Patl_3562
MF M17 M17.004 PepB aminopeptidase MER0055815 Patl_3939
MG M24 M24.001 methionyl aminopeptidase 1 (Escherichia-type) MER0055883 Patl_1248
MG M24 M24.003 Xaa-Pro dipeptidase (bacteria-type) MER0055870 pepQ Patl_0199
MG M24 M24.004 aminopeptidase P (bacteria) MER0055821 Patl_3502
MG M24 unassigned subfamily M24A unassigned peptidases MER0055864 Patl_1471
MG M24 unassigned subfamily M24B unassigned peptidases MER0055861 Patl_3777
MG M24 unassigned subfamily M24B unassigned peptidases MER0064800 Patl_3488
MG M24 unassigned subfamily M24B unassigned peptidases MER0983922
MH M20 non-peptidase homologue subfamily M20D non-peptidase homologues MER0055863 Patl_1518
MH M20 unassigned subfamily M20A unassigned peptidases MER0064792 dapE Patl_2192
MH M20 unassigned subfamily M20A unassigned peptidases MER0055850 Patl_4262
MH M20 unassigned subfamily M20A unassigned peptidases MER0064785 Patl_0983
MH M20 unassigned family M20D unassigned peptidases MER0055857 Patl_2787
MH M20 unassigned family M20 unassigned peptidases MER0055881 Patl_1297
MH M20 unassigned family M20 unassigned peptidases MER0064790 Patl_2051
MH M28 non-peptidase homologue subfamily M28E non-peptidase homologues MER0055879 Patl_1679
MH M28 non-peptidase homologue subfamily M28E non-peptidase homologues MER1249975
MH M28 unassigned subfamily M28C unassigned peptidases MER0055827 Patl_0578
MH M28 unassigned subfamily M28D unassigned peptidases MER0055841 Patl_3182
MH M28 unassigned subfamily M28E unassigned peptidases MER0055833 Patl_0405
MH M28 unassigned subfamily M28E unassigned peptidases MER0055874 Patl_0042
MH M28 unassigned subfamily M28E unassigned peptidases MER1060183
MH M28 unassigned subfamily M28E unassigned peptidases MER1246158
MH M28 unassigned family M28 unassigned peptidases MER0055823 Patl_2954
MJ M19 M19.012 Caul_3875-type dipeptidase MER0055845 Patl_0941
MJ M19 unassigned family M19 unassigned peptidases MER0064803 Patl_3688
MJ M19 unassigned family M19 unassigned peptidases MER1199582
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0859749 Patl_4277
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0872069 Patl_0466
MM M50 unassigned subfamily M50B unassigned peptidases MER0055882 Patl_1256
MO M23 non-peptidase homologue subfamily M23B non-peptidase homologues MER0055838 Patl_3376
MO M23 non-peptidase homologue subfamily M23B non-peptidase homologues MER0055852 Patl_3610
MO M23 non-peptidase homologue subfamily M23B non-peptidase homologues MER0055860 Patl_3863
MO M23 non-peptidase homologue subfamily M23B non-peptidase homologues MER0055880 Patl_1689
MO M23 unassigned subfamily M23B unassigned peptidases MER0055820 Patl_3512
MO M23 unassigned subfamily M23B unassigned peptidases MER0055855 Patl_0513
MU M103 M103.001 TldD peptidase (Escherichia coli) MER0055873 Patl_0190
MU M103 M103.UNW family M103 non-peptidase homologues MER0055872 Patl_0193
MU M103 M103.UNW family M103 non-peptidase homologues MER0055876 Patl_3491
MU M103 M103.UNW family M103 non-peptidase homologues MER0064801 Patl_3490
NB N6 N06.A01 FlhB protein (Escherichia coli) MER0405335 Patl_3034
PA S1 unassigned subfamily S1A unassigned peptidases MER0488500 Patl_3108
PA S1 unassigned subfamily S1B unassigned peptidases MER0217577 Patl_2442
PA S1 unassigned subfamily S1C unassigned peptidases MER0055826 Patl_0554 Patl_0554
PA S1 unassigned subfamily S1C unassigned peptidases MER0055830 Patl_4019
PA S1 unassigned subfamily S1C unassigned peptidases MER0055884 Patl_1208
PA S1 unassigned subfamily S1C unassigned peptidases MER1271136
PA S1 unassigned subfamily S1C unassigned peptidases MER0055854 Patl_0553
PB C44 C44.001 amidophosphoribosyltransferase precursor MER0119426 Patl_1609
PB C44 non-peptidase homologue family C44 non-peptidase homologues MER0458659 asnB Patl_2955
PB C44 non-peptidase homologue family C44 non-peptidase homologues MER0455829 glmS Patl_3881
PB T1 T01.006 HslV component of HslUV peptidase MER0055849 hslV Patl_4191
PB T2 unassigned family T2 unassigned peptidases MER0120021 Patl_0125
PB T3 T03.001 gamma-glutamyltransferase 1 (bacterial-type) MER0101102 Patl_1885
PB T3 T03.001 gamma-glutamyltransferase 1 (bacterial-type) MER0101182 Patl_3459
PB T3 T03.025 oxamate amidohydrolase proenzyme (Klebsiella pneumonia) MER0101181 Patl_2054
PC C26 C26.955 aminodeoxychorismate synthase, subunit II MER0435935 Patl_0653
PC C26 C26.960 TrpD protein (anthranilate synthase component II) MER0441448 Patl_2830
PC C26 C26.965 imidazole glycerol phosphate synthase subunit HisH MER0444421 hisH Patl_2884
PC C26 unassigned family C26 unassigned peptidases MER0440182 carA Patl_2215
PC C56 C56.001 PfpI peptidase MER0137985 Patl_2212
PC C56 C56.001 PfpI peptidase MER0055853 Patl_3430
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0166335 Patl_2142
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0166764 Patl_2650
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0166975 Patl_3778
PC S51 S51.001 dipeptidase E MER0064789 Patl_1809
PC S51 unassigned family S51 unassigned peptidases MER1356628
SB S8 unassigned subfamily S8A unassigned peptidases MER0055837 Patl_3544
SB S8 unassigned subfamily S8A unassigned peptidases MER0055868 Patl_1035
SB S8 unassigned subfamily S8A unassigned peptidases MER0064784 Patl_0638
SB S8 unassigned subfamily S8B unassigned peptidases MER1290400
SC S9 S09.071 trilobed protease MER0055834 Patl_1818
SC S9 S09.A40 YqiA protein (Escherichi coli) MER0214245 Patl_0434
SC S9 S09.A77 dpf-6 g.p. (Caenorhabditis elegans) MER0055835 Patl_1803
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0208850 Patl_1546
SC S9 unassigned subfamily S9A unassigned peptidases MER0055846 Patl_3968 Patl_3968
SC S9 unassigned subfamily S9A unassigned peptidases MER0064794 Patl_2782
SC S9 unassigned subfamily S9B unassigned peptidases MER0997664 Patl_1828
SC S9 unassigned subfamily S9B unassigned peptidases MER1001436 Patl_1439
SC S9 unassigned subfamily S9B unassigned peptidases MER1299275
SC S9 unassigned subfamily S9C unassigned peptidases MER0055871 Patl_0194
SC S9 unassigned subfamily S9C unassigned peptidases MER0998310 Patl_2922
SC S9 unassigned subfamily S9C unassigned peptidases MER1304234
SC S9 unassigned family S9 unassigned peptidases MER0055839 Patl_2525 Patl_2525
SC S9 unassigned family S9 unassigned peptidases MER0210405 Patl_1977
SC S9 unassigned family S9 unassigned peptidases MER0210976 Patl_2202
SC S15 unassigned family S15 unassigned peptidases MER0055844 Patl_0930
SC S33 S33.001 prolyl aminopeptidase MER0055847 Patl_3951
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0209499 Patl_1915
SC S33 unassigned family S33 unassigned peptidases MER0209510 Patl_0077
SC S33 unassigned family S33 unassigned peptidases MER0212714 Patl_1464
SC S33 unassigned family S33 unassigned peptidases MER0211186 Patl_2149
SC S33 unassigned family S33 unassigned peptidases MER0208861 Patl_2805
SC S33 unassigned family S33 unassigned peptidases MER0209201 Patl_3337
SE S11 unassigned family S11 unassigned peptidases MER0064787 Patl_1556
SE S12 S12.950 esterase EstB MER0117042 Patl_3606
SE S12 unassigned family S12 unassigned peptidases MER0118163 Patl_1906
SE S12 unassigned family S12 unassigned peptidases MER0080477 Patl_2539
SE S12 unassigned family S12 unassigned peptidases MER0124059 Patl_2616
SE S12 unassigned family S12 unassigned peptidases MER0117440 Patl_4159
SE S12 unassigned family S12 unassigned peptidases MER0421737 Patl_2902
SE S12 unassigned family S12 unassigned peptidases MER0421738 Patl_3770
SE S12 unassigned family S12 unassigned peptidases MER0167025 Patl_3874
SE S12 unassigned family S12 unassigned peptidases MER0355314 Patl_4160
SE S12 unassigned family S12 unassigned peptidases MER0421739 Patl_4193
SF S24 S24.001 repressor LexA MER0055851 lexA Patl_4247
SF S24 S24.003 UmuD protein MER0055836 Patl_2345
SF S26 S26.001 signal peptidase I MER0055817 Patl_3150
SF S26 S26.026 PA1303 peptidase (Pseudomonas sp.) MER0055829 Patl_2309
SH S73 S73.001 gpO peptidase (Enterobacteria phage P2) MER0150998 Patl_0696
SJ S16 S16.001 Lon-A peptidase MER0064797 Patl_3134
SJ S16 unassigned family S16 unassigned peptidases MER0055818 Patl_1567
SJ S16 unassigned family S16 unassigned peptidases MER1032830 Patl_1280
SK S14 S14.001 peptidase Clp (type 1) MER0064798 clpP Patl_3136
SK S41 S41.001 C-terminal processing peptidase-1 MER0055832 Patl_1993
SK S41 S41.012 Pep putative peptidase (Vibrio-type) MER0055856 Patl_0479
SK S49 unassigned subfamily S49A unassigned peptidases MER1348972
SK S49 unassigned subfamily S49B unassigned peptidases MER0064791 Patl_2181
SK S49 unassigned family S49 unassigned peptidases MER0064793 Patl_2367
SS S66 S66.001 murein tetrapeptidase LD-carboxypeptidase (Pseudomonas-type) MER0055848 Patl_4176
ST S54 non-peptidase homologue family S54 non-peptidase homologues MER1081497 Patl_0064
ST S54 unassigned family S54 unassigned peptidases MER1083041 Patl_2522
ST S54 unassigned family S54 unassigned peptidases MER1075743 Patl_2190
ST S54 unassigned family S54 unassigned peptidases MER1079083 Patl_1218

GENOME ANALYSIS: Comparison with 24 completely sequenced genomes from genus Pseudoalteromonas
Family Comment
A32 significant presence (2 homologues)
A39 significant presence (1 homologues)
C26 significant decrease in homologues (4 homologues)
C39 significant presence (1 homologues)
C40 significant presence (1 homologues)
C56 lineage specific expansion (5 homologues)
C60 significant presence (1 homologues)
C93 significant presence (2 homologues)
M1 significant decrease in homologues (4 homologues)
M103 lineage specific expansion (4 homologues)
M12 significant presence (2 homologues)
M17 significant decrease in homologues (2 homologues)
M50 significant decrease in homologues (1 homologues)
S1 lineage specific expansion (7 homologues)
S41 significant decrease in homologues (2 homologues)
S51 significant presence (2 homologues)

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