Thiobacillus denitrificans

Taxonomy
Taxonomy database identifier: 36861
Superkingdom Bacteria
Phylum Proteobacteria
Class Betaproteobacteria
Species denitrificans
Genus Thiobacillus
Peptidase View peptidase sequences from Thiobacillus denitrificans
Count of known and putative peptidases: 52, non-peptidase homologues 8
Completely sequences genomes from subspecies and strains Protein coding genes

To show all strains with completely sequenced genomes, click here.

Clan Family MEROPS ID Peptidase or homologue (subtype) MERNUM Gene Link Locus Megabases
AA A32 unassigned family A32 unassigned peptidases MER0241752 Tbd_0877
AC A8 unassigned family A8 unassigned peptidases MER0054284 lspA Tbd_1858
AC A8 unassigned family A8 unassigned peptidases MER1154742
AD A24 A24.001 type 4 prepilin peptidase 1 MER0054879 Tbd_2368
AD A24 unassigned subfamily A24A unassigned peptidases MER1156573
AE A31 unassigned family A31 unassigned peptidases MER0054868 Tbd_1380
CL C82 unassigned subfamily C82A unassigned peptidases MER0461844 Tbd_1217
CO C40 C40.006 PgpA peptidase MER0094218 Tbd_0992
G- G5 unassigned family G5 unassigned peptidases MER0054872 Tbd_1797
MA M1 M01.005 alanyl aminopeptidase (bacterial-type) MER0054865 Tbd_0899
MA M3 unassigned subfamily M3A unassigned peptidases MER0079812 Tbd_2433
MA M41 M41.001 FtsH peptidase MER0054867 ftsH Tbd_1133
MA M48 M48.002 HtpX peptidase MER0117302 htpX Tbd_2603
MA M48 unassigned subfamily M48C unassigned peptidases MER0054860 Tbd_0568
MA M48 unassigned subfamily M48C unassigned peptidases MER0054866 Tbd_0982
MA M48 unassigned subfamily M48C unassigned peptidases MER0054875 Tbd_2077
MA M48 unassigned subfamily M48C unassigned peptidases MER0887171 Tbd_0040
MA M90 unassigned family M90 unassigned peptidases MER0227955 Tbd_0769
MA M90 unassigned family M90 unassigned peptidases MER0493325
ME M16 M16.019 YMXG peptidase MER0089963 Tbd_0377
ME M16 non-peptidase homologue family M16 non-peptidase homologues MER0094345 Tbd_0378
ME M16 unassigned subfamily M16B unassigned peptidases MER0089964 Tbd_0378
MF M17 M17.003 PepA aminopeptidase MER0079808 pepA Tbd_0580
MF M17 unassigned family M17 unassigned peptidases MER0079809 Tbd_0656
MG M24 M24.001 methionyl aminopeptidase 1 (Escherichia-type) MER0054862 Tbd_0784
MG M24 unassigned subfamily M24A unassigned peptidases MER1210716
MG M24 unassigned subfamily M24B unassigned peptidases MER0079810 Tbd_2334
MG M24 unassigned subfamily M24B unassigned peptidases MER1243537
MH M20 unassigned subfamily M20A unassigned peptidases MER0052562
MM M50 unassigned subfamily M50B unassigned peptidases MER0054863 Tbd_0792
MM M50 unassigned subfamily M50B unassigned peptidases MER0891726 Tbd_1526
MO M23 M23.009 Mername-AA292 peptidase MER0054858 Tbd_0458
MO M23 non-peptidase homologue subfamily M23B non-peptidase homologues MER0054880 Tbd_2393
MO M23 non-peptidase homologue subfamily M23B non-peptidase homologues MER0479021 Tbd_0837
MU M103 M103.001 TldD peptidase (Escherichia coli) MER0122411 Tbd_0512
MU M103 M103.UNW family M103 non-peptidase homologues MER0054877 Tbd_2148
NB N6 N06.A01 FlhB protein (Escherichia coli) MER0327129
NB N6 non-peptidase homologue family N6 non-lyase homologues MER0900790 Tbd_1596
NB N6 unassigned family N6 unassigned peptide lyases MER0406040 Tbd_1176
PA S1 S01.477 AlgW peptidase MER0054873 Tbd_1834
PA S1 unassigned subfamily S1C unassigned peptidases MER0054281 Tbd_0097
PA S1 unassigned subfamily S1C unassigned peptidases MER0054876 Tbd_2091
PA S1 unassigned subfamily S1C unassigned peptidases MER1273112
PA S1 unassigned subfamily S1C unassigned peptidases MER1273786
PA S1 unassigned subfamily S1C unassigned peptidases MER1274527
PB C44 C44.001 amidophosphoribosyltransferase precursor MER0117129 Tbd_1908
PB C44 non-peptidase homologue family C44 non-peptidase homologues MER0458621 Tbd_0060
PB C44 non-peptidase homologue family C44 non-peptidase homologues MER0455812 glmS Tbd_2793
PB C44 unassigned family C44 unassigned peptidases MER0458622 Tbd_0292
PB T1 T01.006 HslV component of HslUV peptidase MER0124969 hslV Tbd_2541
PB T1 T01.023 BPH protein MER1143005
PB T1 unassigned subfamily T1A unassigned peptidases MER0416460
PB T1 unassigned subfamily T1A unassigned peptidases MER0157159
PB T2 unassigned family T2 unassigned peptidases MER0177880 Tbd_1931
PB T3 T03.001 gamma-glutamyltransferase 1 (bacterial-type) MER0101088 Tbd_1410
PC C26 C26.955 aminodeoxychorismate synthase, subunit II MER0435922 Tbd_2224
PC C26 C26.964 CTP synthetase MER0450232 pyrG Tbd_0619
PC C26 unassigned family C26 unassigned peptidases MER0451463
PC C26 unassigned family C26 unassigned peptidases MER0441361 carA Tbd_1127
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0054874 Tbd_1845
PE T5 T05.001 ornithine acetyltransferase precursor MER0119892 argJ Tbd_0029
SB S8 unassigned subfamily S8A unassigned peptidases MER0054859 Tbd_0507
SC S9 S09.A40 YqiA protein (Escherichi coli) MER0213020 Tbd_2574
SC S33 S33.001 prolyl aminopeptidase MER0054864 Tbd_0887
SC S33 unassigned family S33 unassigned peptidases MER1339604
SE S11 S11.007 penicillin-binding protein 4 (Neisseria-type) peptidase MER0353032 Tbd_0083
SE S11 non-peptidase homologue family S11 non-peptidase homologues MER0079807 Tbd_0266
SE S11 unassigned family S11 unassigned peptidases MER0118830 Tbd_0647
SE S13 S13.003 D-Ala-D-Ala carboxypeptidase PBP3 MER0054857 Tbd_0101
SE S13 unassigned family S13 unassigned peptidases MER1315031
SE S13 unassigned family S13 unassigned peptidases MER1315076
SF S24 S24.001 repressor LexA MER0054869 lexA Tbd_1483
SF S24 non-peptidase homologue family S24 non-peptidase homologues MER1045426 Tbd_1516
SF S24 unassigned family S24 unassigned peptidases MER1329909
SF S26 S26.001 signal peptidase I MER0054285 Tbd_2088
SJ S16 S16.001 Lon-A peptidase MER0054283 Tbd_1675
SJ S16 S16.A04 DNA repair protein RadA (Escherichia coli) MER0361787 Tbd_0965
SJ S16 unassigned family S16 unassigned peptidases MER0054861 Tbd_0676
SJ S16 unassigned family S16 unassigned peptidases MER0054282 Tbd_1252
SK S14 S14.001 peptidase Clp (type 1) MER0054870 clpP Tbd_1677
SK S14 unassigned family S14 unassigned peptidases MER1317476
SK S41 S41.004 C-terminal processing peptidase-3 MER0054286 Tbd_2392
SK S49 unassigned subfamily S49B unassigned peptidases MER0060225 Tbd_1560
SK S49 unassigned subfamily S49B unassigned peptidases MER0062355 Tbd_2629
SK S49 unassigned subfamily S49B unassigned peptidases MER1355285
SK S49 unassigned subfamily S49B unassigned peptidases MER1355817
SK S49 unassigned subfamily S49B unassigned peptidases MER1356295
SK S49 unassigned subfamily S49C unassigned peptidases MER1071593 Tbd_0491
ST S54 S54.025 At5g25752 rhomboid peptidase MER0111987 Tbd_1772
U- U32 U32.003 collagenase (Salmonella-type) MER0122857 Tbd_1033
U- U32 unassigned family U32 unassigned peptidases MER0054878 Tbd_2186

GENOME ANALYSIS: Comparison with 13 completely sequenced genomes from species denitrificans
Family Comment
S9 significant decrease in homologues (1 homologues)
S33 significant decrease in homologues (2 homologues)
T1 lineage specific expansion (4 homologues)
T2 significant presence (1 homologues)