$VAR1 = undef;

Summary for peptidase C01.060: cathepsin B

Summary Gene structure Alignment Tree Sequences Sequence features Distribution Structure Literature Substrates Pharma

 

Names
MEROPS Namecathepsin B
Other namescathepsin B1, cathepsin II (obs.), CTSB g.p. (Homo sapiens), longipain, vitellogenic cathepsin B (Aedes aegypti)
Domain architecture
MEROPS Classification
Classification Clan CA >> Subclan (none) >> Family C1 >> Subfamily A >> C01.060
Holotypecathepsin B (Homo sapiens), Uniprot accession P07858 (peptidase unit: 80-331), MERNUM MER0000686
History Identifier created: Handbook of Proteolytic Enzymes (1998) Academic Press, London.
Activity
Catalytic typeCysteine
PeplistIncluded in the Peplist with identifier PL00067
NC-IUBMBSubclass 3.4 (Peptidases) >> Sub-subclass 3.4.22 (Cysteine endopeptidases) >> Peptidase 3.4.22.3
EnzymologyBRENDA database
Proteolytic eventsCutDB database (35 cleavages)
Activity statushuman: active (Mort, 2004)
mouse: active (Mort et al., 1988)
PhysiologyContributes to antigen processing for MHC II in mouse, but is not indespensable (Deussing et al., 1998). Suggested to mediate post-translational processing and activation of prorenin (Jutras & Reudelhuber, 1999).
KnockoutAntisense-transfected osteosarcoma cells with depressed expression of cathepsin B showed lower invasive activity in Transwell chambers, consistent with the proposal that cathepsin B is involved in the proteolytic processes in invasive osteosarcomas (Kruger et al., 1999). Combined deficiency of cathepsins B and L in mice is lethal during the second to fourth week, and associated with a degree of brain atrophy not previously seen in mice (Felbor et al., 2002).
Pharmaceutical relevancePotential drug target for cancer (e.g. Bervar et al., 2003), but may be required for induction of caspase-independent cell death (Broker et al., 2004). Proposed to be responsible for premature activation of trypsinogen in acute pancreatitis (Figarella et al., 1988; Szilagyi et al., 2001). It has been reported that down-regulation of expression of both cathepsin B and u-plasminogen activator has anti-tumour activity in experimental systems (Gondi et al., 2004).
Pathways KEGGAntigen processing and presentation
KEGGLysosome
Other databases WIKIPEDIAhttp://en.wikipedia.org/wiki/Cathepsin_B
Cleavage site specificity Explanations of how to interpret the following cleavage site sequence logo and specificity matrix can be found here.
Cleavage pattern-/-/-/-Scissile bond-/-/-/- (based on 4712 cleavages)
weblogo
Specificity matrix
 
Amino acid P4 P3 P2 P1 P1' P2' P3' P4'
Gly 346 322 67 668 279 436 1088 509
Pro 241 268 95 10 7 230 380 302
Ala 442 406 675 551 475 679 507 500
Val 328 212 595 92 495 486 222 300
Leu 310 625 403 335 916 224 270 276
Ile 159 216 207 33 433 297 140 201
Met 149 195 156 159 106 34 53 48
Phe 150 158 256 117 329 103 119 88
Tyr 109 110 152 93 169 56 84 71
Trp 27 37 33 26 6 8 5 6
Ser 309 281 379 400 290 523 273 339
Thr 254 199 257 372 227 308 139 234
Cys 63 30 144 60 39 38 21 20
Asn 145 87 66 112 107 178 185 175
Gln 238 186 137 329 125 164 141 241
Asp 174 53 144 77 104 227 269 383
Glu 308 272 156 322 259 338 335 444
Lys 442 649 460 530 215 261 322 414
Arg 274 287 240 355 66 23 23 13
His 99 55 73 71 25 49 63 70
Specificity from combinatorial peptides
 
Organism comment P4 P3 P2 P1 P1' P2' P3' P4' optimal substrate fluorophore or acceptor-donor pair Reference
Homo sapiens recombinant - - F/Y R/K F F - - xxFR+FFxx Dnp-Trp Cezari et al., 2002
Homo sapiens recombinant - - - - F/L - - - xxx+Fxxx Abz-EDDnp Melo et al., 2001
Homo sapiens recombinant R/H/broad n/L V/M/n R/K - - - - RnVR ACC Choe et al., 2006
Homo sapiens recombinant - - V/F/Y R/L/S/A A - - - xxVR+Axxx Abz-Dnp Cotrin et al., 2004
Homo sapiens recombinant - - - R - - - - xxxR+xxxx Abz-EDDnp Del Nery et al., 2000
Homo sapiens recombinant Q/G S V/A G/Q F A/V - - QSVG+FAxx Tyr(NO2)-Abz Peterson et al., 1998
Rattus norvegicus recombinant - - - - L/F - - - xxxx+Lxxx Dansyl-Trp Ménard et al., 1993
Human genetics
Gene symbol Locus Megabases Ensembl Entrez gene Gene Cards OMIM
CTSB 8p22 ENSG00000164733 1508 CTSB 116810
Mouse genetics
Gene symbol Position Megabases Ensembl Entrez gene MGI
Ctsb 14:C3 ENSMUSG00000021939 13030 MGI:88561