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natural_source_ncbi_code:"386891"

Filter By

Current Database

  • EMDB [10]

Current status

  • REL [10]

Sample type

  • Complex [10]
  • Protein [10]
  • RNA [10]
  • Ligand [9]
  • DNA [1]

Organism

  • Moraxella bovoculi [10]
  • Lachnospiraceae bacterium nd2006 [7]
  • Synthetic construct [3]
  • Lachnospiraceae bacterium [2]

EM Method

  • Single-particle [10]

Resolution

  • ≥ 3Å and < 4Å [7]
  • ≥ 4Å and < 5Å [3]

Model molecular weight

  • 100-250 kDa [7]
  • 250-500 kDa [3]

Release Date

  • 2019 [10]

Author by name

  • Li Z [7]
  • Chang L [5]
  • Daczkowski CM [5]
  • Gabel C [5]
  • Mesecar AD [5]
  • Zhang H [5]
  • Adler BA [2]
  • Al-shayeb B [2]
  • Arkin AP [2]
  • Cress BF [2]
  • Doudna JA [2]
  • Fellmann C [2]
  • Gao GF [2]
  • Hammel M [2]
  • He S [2]
  • Knott GJ [2]
  • Lew RJ [2]
  • Liu JJ [2]
  • Lobba MJ [2]
  • Peng Q [2]
  • Peng R [2]
  • Qi J [2]
  • Rosenberg DJ [2]
  • Shi Y [2]
  • Thornton BW [2]
  • Wang P [2]
  • Wu LA [2]
  • Wu Y [2]
  • Xu M [2]
  • Xu Y [2]
  • Dong L [1]
  • Gao N [1]
  • Guan X [1]
  • Han Z [1]
  • Huang Z [1]
  • Li N [1]
  • Ren K [1]
  • Yu L [1]
  • Zhang F [1]
  • Zhou F [1]
  • Zhu Y [1]

Author by ORCID

  • Zhang H [5]
  • Gabel C [5]
  • Rosenberg DJ [2]
  • Doudna JA [2]
  • Xu M [2]
  • Cress BF [2]
  • Al-shayeb B [2]
  • Gao GF [2]
  • Arkin AP [2]
  • Hammel M [2]
  • Adler BA [2]
  • Liu JJ [2]
  • Knott GJ [2]
  • Fellmann C [2]
  • Thornton BW [2]
  • Li N [1]
  • Huang Z [1]
  • Gao N [1]

Journal

  • CELL HOST MICROBE [5]
  • ACTA CRYSTALLOGR D STRUCT BIOL [2]
  • ELIFE [2]
  • PNAS [2]
  • NAT STRUCT MOL BIOL [1]

Software

  • CISTEM [3]
  • RELION [3]

Microscope

  • FEI TITAN KRIOS [10]

Electron Source

  • FIELD EMISSION GUN [10]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [9]
  • GATAN K2 QUANTUM 4K X 4K [1]

External links

  • PDB [10]
  • UniProt [10]
  • ChEBI [9]
  • DrugBank [9]
  • AlphaFold DB [7]
  • ChEMBL [5]
  • PDBe-Kb [3]
  • InterPro [2]
  • Pfam [2]
Sort by: Download
Showing 1 - 10 of 10. Page 1 of 1
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EMD-0704
Download Map
3D View
Structure of LbCas12a-crRNA complex bound to AcrVA4 form A complex
Release date: Sept. 11, 2019
Resolution: 3.25 Å
EM Method: Single-particle
Fitted PDBs: 6kl9
Q-score: 0.434

Peng R, Li Z, Xu Y, He S, Peng Q, Wu LA, Wu Y, Qi J, Wang P, Shi Y, Gao GF

PNAS (2019) 116 pp. 18928-18936 [ DOI: doi:10.1073/pnas.1909400116 Pubmed: 31467167 ]

EMD-0705
Download Map
3D View
Structure of LbCas12a-crRNA complex bound to AcrVA4 form B complex
Release date: Sept. 11, 2019
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 6klb
Q-score: 0.224

Peng R, Li Z, Xu Y, He S, Peng Q, Wu LA, Wu Y, Qi J, Wang P, Shi Y, Gao GF

PNAS (2019) 116 pp. 18928-18936 [ DOI: doi:10.1073/pnas.1909400116 Pubmed: 31467167 ]

EMD-20266
Download Map
3D View
Cryo-EM structure of LbCas12a-crRNA: AcrVA4 1:2 complex
Release date: Aug. 21, 2019
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 6p7m
Q-score: 0.549

Knott GJ, Cress BF, Liu JJ, Thornton BW, Lew RJ, Al-Shayeb B, Rosenberg DJ, Hammel M, Adler BA, Lobba MJ, Xu M, Arkin AP, Fellmann C, Doudna JA

eLife (2019) 8 [ DOI: doi:10.7554/eLife.49110 Pubmed: 31397669 ]

EMD-20267
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3D View
Cryo-EM structure of LbCas12a-crRNA: AcrVA4 2:2 complex
Release date: Aug. 21, 2019
Resolution: 4.9 Å
EM Method: Single-particle
Fitted PDBs: 6p7n
Q-score: 0.158

Knott GJ, Cress BF, Liu JJ, Thornton BW, Lew RJ, Al-Shayeb B, Rosenberg DJ, Hammel M, Adler BA, Lobba MJ, Xu M, Arkin AP, Fellmann C, Doudna JA

eLife (2019) 8 [ DOI: doi:10.7554/eLife.49110 Pubmed: 31397669 ]

EMD-0445
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3D View
CryoEM structure of the LbCas12a-crRNA-AcrVA4 complex
Release date: June 12, 2019
Resolution: 3.38 Å
EM Method: Single-particle
Fitted PDBs: 6nma
Q-score: 0.489

Zhang H, Li Z, Daczkowski CM, Gabel C, Mesecar AD, Chang L

Cell Host Microbe (2019) 25 pp. 815- [ Pubmed: 31155345 DOI: doi:10.1016/j.chom.2019.05.004 ]

EMD-0446
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3D View
CryoEM structure of the LbCas12a-crRNA-2xAcrVA1 complex
Release date: June 12, 2019
Resolution: 4.24 Å
EM Method: Single-particle
Fitted PDBs: 6nmc
Q-score: 0.295

Zhang H, Li Z, Daczkowski CM, Gabel C, Mesecar AD, Chang L

Cell Host Microbe (2019) 25 pp. 815- [ Pubmed: 31155345 DOI: doi:10.1016/j.chom.2019.05.004 ]

EMD-0447
Download Map
3D View
cryo-EM Structure of the LbCas12a-crRNA-AcrVA1 complex
Release date: June 12, 2019
Resolution: 3.49 Å
EM Method: Single-particle
Fitted PDBs: 6nmd
Q-score: 0.185

Zhang H, Li Z, Daczkowski CM, Gabel C, Mesecar AD, Chang L

Cell Host Microbe (2019) 25 pp. 815- [ Pubmed: 31155345 DOI: doi:10.1016/j.chom.2019.05.004 ]

EMD-9398
Download Map
3D View
CryoEM structure of the LbCas12a-crRNA-AcrVA4 dimer
Release date: June 12, 2019
Resolution: 3.38 Å
EM Method: Single-particle
Fitted PDBs: 6nm9
Q-score: 0.411

Zhang H, Li Z, Daczkowski CM, Gabel C, Mesecar AD, Chang L

Cell Host Microbe (2019) 25 pp. 815- [ Pubmed: 31155345 DOI: doi:10.1016/j.chom.2019.05.004 ]

EMD-20132
Download Map
3D View
CryoEM structure of the LbCas12a-crRNA-AcrVA4-DNA complex
Release date: June 12, 2019
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6omv
Q-score: 0.348

Zhang H, Li Z, Daczkowski CM, Gabel C, Mesecar AD, Chang L

Cell Host Microbe (2019) 25 pp. 815- [ Pubmed: 31155345 DOI: doi:10.1016/j.chom.2019.05.004 ]

EMD-9742
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3D View
Cryo-EM structure of AcrVA5-acetylated MbCas12a in complex with crRNA
Release date: April 10, 2019
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 6iv6
Q-score: 0.436

Dong L, Guan X, Li N, Zhang F, Zhu Y, Ren K, Yu L, Zhou F, Han Z, Gao N, Huang Z

Nat Struct Mol Biol (2019) 26 pp. 308-314 [ Pubmed: 30936526 DOI: doi:10.1038/s41594-019-0206-1 ]

Sort by: Download
Showing 1 - 10 of 10. Page 1 of 1
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [10]

Current status

  • REL [10]

Sample type

  • Complex [10]
  • Protein [10]
  • RNA [10]
  • Ligand [9]
  • DNA [1]

Organism

  • Moraxella bovoculi [10]
  • Lachnospiraceae bacterium nd2006 [7]
  • Synthetic construct [3]
  • Lachnospiraceae bacterium [2]

EM Method

  • Single-particle [10]

Resolution

  • ≥ 3Å and < 4Å [7]
  • ≥ 4Å and < 5Å [3]

Model molecular weight

  • 100-250 kDa [7]
  • 250-500 kDa [3]

Release Date

  • 2019 [10]

Author by name

  • Li Z [7]
  • Chang L [5]
  • Daczkowski CM [5]
  • Gabel C [5]
  • Mesecar AD [5]
  • Zhang H [5]
  • Adler BA [2]
  • Al-shayeb B [2]
  • Arkin AP [2]
  • Cress BF [2]
  • Doudna JA [2]
  • Fellmann C [2]
  • Gao GF [2]
  • Hammel M [2]
  • He S [2]
  • Knott GJ [2]
  • Lew RJ [2]
  • Liu JJ [2]
  • Lobba MJ [2]
  • Peng Q [2]
  • Peng R [2]
  • Qi J [2]
  • Rosenberg DJ [2]
  • Shi Y [2]
  • Thornton BW [2]
  • Wang P [2]
  • Wu LA [2]
  • Wu Y [2]
  • Xu M [2]
  • Xu Y [2]
  • Dong L [1]
  • Gao N [1]
  • Guan X [1]
  • Han Z [1]
  • Huang Z [1]
  • Li N [1]
  • Ren K [1]
  • Yu L [1]
  • Zhang F [1]
  • Zhou F [1]
  • Zhu Y [1]

Author by ORCID

  • Zhang H [5]
  • Gabel C [5]
  • Rosenberg DJ [2]
  • Doudna JA [2]
  • Xu M [2]
  • Cress BF [2]
  • Al-shayeb B [2]
  • Gao GF [2]
  • Arkin AP [2]
  • Hammel M [2]
  • Adler BA [2]
  • Liu JJ [2]
  • Knott GJ [2]
  • Fellmann C [2]
  • Thornton BW [2]
  • Li N [1]
  • Huang Z [1]
  • Gao N [1]

Journal

  • CELL HOST MICROBE [5]
  • ACTA CRYSTALLOGR D STRUCT BIOL [2]
  • ELIFE [2]
  • PNAS [2]
  • NAT STRUCT MOL BIOL [1]

Software

  • CISTEM [3]
  • RELION [3]

Microscope

  • FEI TITAN KRIOS [10]

Electron Source

  • FIELD EMISSION GUN [10]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [9]
  • GATAN K2 QUANTUM 4K X 4K [1]

External links

  • PDB [10]
  • UniProt [10]
  • ChEBI [9]
  • DrugBank [9]
  • AlphaFold DB [7]
  • ChEMBL [5]
  • PDBe-Kb [3]
  • InterPro [2]
  • Pfam [2]