Electron Microscopy Data Bank

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author:"Thoma NH"

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Author by name

Thoma NH [48]
Cavadini S [39]
Kempf G [29]
Grand RS [21]
Schubeler D [21]
Weiss J [18]
Kater L [17]
Bunker RD [16]
Fierz B [15]
Makasheva K [15]
Matsumoto S [15]
Isbel L [14]
Michael AK [14]
Potenza A [14]
Chakraborty D [13]
Schenk AD [13]
Sugasawa K [12]
Andersch F [11]
Becker PB [11]
Crosby P [11]
Eggers N [11]
Fribourgh JL [11]
Healy KL [11]
Liu AC [11]
Menet JS [11]
Minnich M [11]
Nie XY [11]
Partch CL [11]
Seebacher J [11]
Stoos L [11]
Vecchia L [11]
Zuber J [11]
Rabl J [10]
Fischer ES [8]
Iwai S [7]
Kozicka Z [7]
Kurumizaka H [7]
Mohamed WI [7]
Pathare GR [7]
Yamamoto J [7]
Abdulrahman W [6]
Hassiepen U [6]
Kassube SA [6]
Thomae N [6]
Aguirre JD [5]
Beckwith REJ [5]
Faty M [5]
Goldie KN [5]
Lingaraju GM [5]
Pantelic RS [5]
Petzold G [5]
Sandate CR [5]
Stahlberg H [5]
Tichkule R [5]
Ablasser A [4]
Decout A [4]
Gluck S [4]
Guey B [4]
Hovius R [4]
Melenec P [4]
Schmitt S [4]
Armstrong SA [3]
Belizaire R [3]
Brown J [3]
Burger L [3]
Cutler JA [3]
Donovan KA [3]
Ebert BL [3]
Ener E [3]
Focht V [3]
Galli P [3]
Graff-meyer A [3]
Hatton C [3]
Irizarry R [3]
Kim J [3]
Li YD [3]
Lumpkin RJ [3]
Miller PG [3]
Park PMC [3]
Pla-prats C [3]
Regalado BD [3]
Rutter JC [3]
Sandoval B [3]
Sievers Q [3]
Slabicki M [3]
Sperling AS [3]
Sperling MT [3]
Thoma N [3]
Tsai JM [3]
Zhang Z [3]
Zon R [3]
Zou C [3]
Abdul Rahman W [2]
Basters A [2]
Reichermeier K [2]
Akopian D [1]
Andres-pons A [1]
Bouwmeester T [1]
Branigan E [1]
Chakrabory D [1]

Author by ORCID

Thoma NH [41]
Bunker RD [16]
Makasheva K [15]
Fierz B [15]
Weiss J [15]
Isbel L [14]
Michael AK [14]
Schenk AD [13]
Matsumoto S [12]
Andersch F [11]
Becker PB [11]
Zuber J [11]
Eggers N [11]
Partch CL [11]
Menet JS [11]
Liu AC [11]
Minnich M [11]
Chakraborty D [11]
Nie XY [11]
Rabl J [10]
Grand RS [10]
Kempf G [8]
Cavadini S [8]
Kozicka Z [7]
Kassube SA [6]
Petzold G [5]
Aguirre JD [5]
Fischer ES [5]
Stahlberg H [5]
Melenec P [4]
Pathare GR [4]
Decout A [4]
Hovius R [4]
Guey B [4]
Gluck S [4]
Ablasser A [4]
Schubeler D [3]
Pla-prats C [3]
Weiss J [3]
Regalado BD [3]
Graff-meyer A [3]
Cutler JA [3]
Pathare GR [3]
Matsumoto S [3]
Sandate CR [3]
Burger L [3]
Thoma NH [3]
Ebert BL [3]
Li YD [3]
Mohamed WI [2]
Reichermeier K [2]
Basters A [2]
Mark KG [1]
Andres-pons A [1]
Peters AHFM [1]
Rubin SM [1]
Guerillon C [1]
Gill ME [1]
Gelman L [1]

Journal

Software

Microscope

Electron Source

Film or detector model

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Showing 1 - 10 of 48. Page 1 of 5

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EMD-18809

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Monomeric E6AP-E6-p53 ternary complex

Release date: Dec. 6, 2023
Resolution: 3.67 Å
EM Method: Single-particle
Fitted PDBs: 8r1f
Q-score: 0.316

Sandate CR, Chakraborty D, Kater L, Kempf G, Thoma NH

bioRxiv (2023) [ DOI: doi:10.1101/2023.11.01.565136 ]

EMD-18810

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Dimeric ternary structure of E6AP-E6-p53

Release date: Dec. 6, 2023
Resolution: 3.99 Å
EM Method: Single-particle
Fitted PDBs: 8r1g
Q-score: 0.175

Sandate CR, Chakraborty D, Kater L, Kempf G, Thoma NH

bioRxiv (2023) [ DOI: doi:10.1101/2023.11.01.565136 ]

EMD-17539

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Cryo-EM structure of dimeric UBR5

Release date: June 14, 2023
Resolution: 3.36 Å
EM Method: Single-particle
Fitted PDBs: 8p82
Q-score: 0.299

Tsai JM, Aguirre JD, Li YD, Brown J, Focht V, Kater L, Kempf G, Sandoval B, Schmitt S, Rutter JC, Galli P, Sandate CR, Cutler JA, Zou C, Donovan KA, Lumpkin RJ, Cavadini S, Park PMC, Sievers Q, Hatton C, Ener E, Regalado BD, Sperling MT, Slabicki M, Kim J, Zon R, Zhang Z, Miller PG, Belizaire R, Sperling AS, Fischer ES, Irizarry R, Armstrong SA, Thoma NH, Ebert BL

Mol Cell (2023) 83 pp. 2753-2767.e10 [ DOI: doi:10.1016/j.molcel.2023.06.028 Pubmed: 37478846 ]

EMD-17540

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Cryo-EM structure of full-length human UBR5 homotetramer

Release date: June 14, 2023
Resolution: 3.87 Å
EM Method: Single-particle
Fitted PDBs: 8p83
Q-score: 0.2

Mol Cell (2023) 83 pp. 2753- [ DOI: doi:10.1016/j.molcel.2023.06.028 Pubmed: 37478846 ]

EMD-17541

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Cryo-EM density map of UBR5 in complex with MCRS1

Release date: June 7, 2023
Resolution: 4.45 Å
EM Method: Single-particle

Mark KG, Kolla S, Aguirre JD, Garshott DM, Schmitt S, Haakonsen DL, Xu C, Kater L, Kempf G, Martinez-Gonzalez B, Akopian D, See SK, Thoma NH, Rape M

Cell (2023) 186 pp. 3460-3475.e23 [ Pubmed: 37478862 DOI: doi:10.1016/j.cell.2023.06.015 ]

EMD-17542

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Negative stain map of UBR5 dimer in complex with RARA/RXRA

Release date: June 7, 2023
Resolution: 25.0 Å
EM Method: Single-particle

Mol Cell (2023) 83 pp. 2753-2767.e10 [ DOI: doi:10.1016/j.molcel.2023.06.028 Pubmed: 37478846 ]

EMD-17154

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Cryo-EM structure of CLOCK-BMAL1 bound to a nucleosomal E-box at position SHL 5.8 consensus and constituent map 1

Release date: May 24, 2023
Resolution: 3.6 Å
EM Method: Single-particle

Michael AK, Stoos L, Crosby P, Eggers N, Nie XY, Makasheva K, Minnich M, Healy KL, Weiss J, Kempf G, Cavadini S, Kater L, Seebacher J, Vecchia L, Chakraborty D, Isbel L, Grand RS, Andersch F, Fribourgh JL, Schubeler D, Zuber J, Liu AC, Becker PB, Fierz B, Partch CL, Menet JS, Thoma NH

Nature (2023) 619 pp. 385-393 [ Pubmed: 37407816 DOI: doi:10.1038/s41586-023-06282-3 ]

EMD-17155

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Cryo-EM structure of CLOCK-BMAL1 bound to a nucleosomal E-box at position SHL-6.2 DNA conformation 1

Release date: May 24, 2023
Resolution: 6.2 Å
EM Method: Single-particle
Fitted PDBs: 8osj
Q-score: 0.219

Nature (2023) 619 pp. 385-393 [ Pubmed: 37407816 DOI: doi:10.1038/s41586-023-06282-3 ]

EMD-17156

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Cryo-EM structure of CLOCK-BMAL1 bound to a nucleosomal E-box at position SHL-6.2 DNA conformation 2

Release date: May 24, 2023
Resolution: 3.8 Å
EM Method: Single-particle

Nature (2023) 619 pp. 385-393 [ Pubmed: 37407816 DOI: doi:10.1038/s41586-023-06282-3 ]

EMD-17157

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Cryo-EM structure of CLOCK-BMAL1 bound to a nucleosomal E-box at position SHL 5.8 composite map

Release date: May 24, 2023
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8osk
Q-score: 0.267

Nature (2023) 619 pp. 385-393 [ Pubmed: 37407816 DOI: doi:10.1038/s41586-023-06282-3 ]

Sort by: Download

Showing 1 - 10 of 48. Page 1 of 5

Display:

Statistics

Download

Select database:

EMDB [48]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Download

Filter By

Current Database

Current status

Sample type

Organism

EM Method

Resolution

Model molecular weight

Release Date

Author by name

Thoma NH [48]
Cavadini S [39]
Kempf G [29]
Grand RS [21]
Schubeler D [21]
Weiss J [18]
Kater L [17]
Bunker RD [16]
Fierz B [15]
Makasheva K [15]
Matsumoto S [15]
Isbel L [14]
Michael AK [14]
Potenza A [14]
Chakraborty D [13]
Schenk AD [13]
Sugasawa K [12]
Andersch F [11]
Becker PB [11]
Crosby P [11]
Eggers N [11]
Fribourgh JL [11]
Healy KL [11]
Liu AC [11]
Menet JS [11]
Minnich M [11]
Nie XY [11]
Partch CL [11]
Seebacher J [11]
Stoos L [11]
Vecchia L [11]
Zuber J [11]
Rabl J [10]
Fischer ES [8]
Iwai S [7]
Kozicka Z [7]
Kurumizaka H [7]
Mohamed WI [7]
Pathare GR [7]
Yamamoto J [7]
Abdulrahman W [6]
Hassiepen U [6]
Kassube SA [6]
Thomae N [6]
Aguirre JD [5]
Beckwith REJ [5]
Faty M [5]
Goldie KN [5]
Lingaraju GM [5]
Pantelic RS [5]
Petzold G [5]
Sandate CR [5]
Stahlberg H [5]
Tichkule R [5]
Ablasser A [4]
Decout A [4]
Gluck S [4]
Guey B [4]
Hovius R [4]
Melenec P [4]
Schmitt S [4]
Armstrong SA [3]
Belizaire R [3]
Brown J [3]
Burger L [3]
Cutler JA [3]
Donovan KA [3]
Ebert BL [3]
Ener E [3]
Focht V [3]
Galli P [3]
Graff-meyer A [3]
Hatton C [3]
Irizarry R [3]
Kim J [3]
Li YD [3]
Lumpkin RJ [3]
Miller PG [3]
Park PMC [3]
Pla-prats C [3]
Regalado BD [3]
Rutter JC [3]
Sandoval B [3]
Sievers Q [3]
Slabicki M [3]
Sperling AS [3]
Sperling MT [3]
Thoma N [3]
Tsai JM [3]
Zhang Z [3]
Zon R [3]
Zou C [3]
Abdul Rahman W [2]
Basters A [2]
Reichermeier K [2]
Akopian D [1]
Andres-pons A [1]
Bouwmeester T [1]
Branigan E [1]
Chakrabory D [1]

Author by ORCID

Thoma NH [41]
Bunker RD [16]
Makasheva K [15]
Fierz B [15]
Weiss J [15]
Isbel L [14]
Michael AK [14]
Schenk AD [13]
Matsumoto S [12]
Andersch F [11]
Becker PB [11]
Zuber J [11]
Eggers N [11]
Partch CL [11]
Menet JS [11]
Liu AC [11]
Minnich M [11]
Chakraborty D [11]
Nie XY [11]
Rabl J [10]
Grand RS [10]
Kempf G [8]
Cavadini S [8]
Kozicka Z [7]
Kassube SA [6]
Petzold G [5]
Aguirre JD [5]
Fischer ES [5]
Stahlberg H [5]
Melenec P [4]
Pathare GR [4]
Decout A [4]
Hovius R [4]
Guey B [4]
Gluck S [4]
Ablasser A [4]
Schubeler D [3]
Pla-prats C [3]
Weiss J [3]
Regalado BD [3]
Graff-meyer A [3]
Cutler JA [3]
Pathare GR [3]
Matsumoto S [3]
Sandate CR [3]
Burger L [3]
Thoma NH [3]
Ebert BL [3]
Li YD [3]
Mohamed WI [2]
Reichermeier K [2]
Basters A [2]
Mark KG [1]
Andres-pons A [1]
Peters AHFM [1]
Rubin SM [1]
Guerillon C [1]
Gill ME [1]
Gelman L [1]

Journal

Software

Microscope

Electron Source

Film or detector model

External links