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MEROPS SUBMISSIONS

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information

Thiocapsa marina

Taxonomy
Taxonomy database identifier: 244573
Superkingdom Bacteria
Phylum Proteobacteria
Class Gammaproteobacteria
Species marina
Order Chromatiales
Family Chromatiaceae
Genus Thiocapsa
Peptidase View peptidase sequences from Thiocapsa marina
Count of known and putative peptidases: 52, non-peptidase homologues 5
Completely sequences genomes from subspecies and strains Protein coding genes

To show all strains with completely sequenced genomes, click here.

Clan Family MEROPS ID Peptidase or homologue (subtype) MERNUM Gene Link Locus Megabases
AA A32 unassigned family A32 unassigned peptidases MER0276774 ThimaDRAFT_1448
AA A32 unassigned family A32 unassigned peptidases MER0234457 ThimaDRAFT_1449
AC A8 unassigned family A8 unassigned peptidases MER0324519
AD A24 A24.001 type 4 prepilin peptidase 1 MER0260309 ThimaDRAFT_4372
AE A31 A31.002 HyaD peptidase MER0231587 ThimaDRAFT_0107
AE A31 A31.004 hoxW peptidase MER0427729
AE A31 A31.004 hoxW peptidase MER0427730
AE A31 unassigned family A31 unassigned peptidases MER0232242 ThimaDRAFT_4065
CL C82 C82.A01 LdtF protein (Escherichia coli) MER0462531
CL C82 C82.A01 LdtF protein (Escherichia coli) MER0462532
CL C82 non-peptidase homologue subfamily C82A non-peptidase homologues MER0737791 ThimaDRAFT_0793
CL C82 unassigned subfamily C82A unassigned peptidases MER0462530
CL C82 unassigned subfamily C82A unassigned peptidases MER0463887
CL C82 unassigned subfamily C82A unassigned peptidases MER0321914
CL C82 unassigned subfamily C82A unassigned peptidases MER0463888
CO C40 unassigned family C40 unassigned peptidases MER0377022 ThimaDRAFT_2434
GC G4 non-peptidase homologue family G4 non-peptidase homologues MER0293446
MA M1 M01.005 alanyl aminopeptidase (bacterial-type) MER0335772 ThimaDRAFT_3816
MA M1 unassigned family M1 unassigned peptidases MER0465162
MA M3 M03.004 oligopeptidase A MER1187074
MA M3 M03.004 oligopeptidase A MER0336356
MA M41 M41.001 FtsH peptidase MER0300635
MA M41 M41.001 FtsH peptidase MER0300651
MA M48 M48.002 HtpX peptidase MER0296186 htpX ThimaDRAFT_0373
MA M48 unassigned subfamily M48B unassigned peptidases MER0888358 ThimaDRAFT_4572
MA M48 unassigned subfamily M48B unassigned peptidases MER0349365 ThimaDRAFT_0353
MA M56 non-peptidase homologue family M56 non-peptidase homologues MER0934897 ThimaDRAFT_4572
MA M61 M61.002 BcepAP aminopeptidase (Burkholderia cepacia) MER0310244 ThimaDRAFT_1060
MA M90 unassigned family M90 unassigned peptidases MER0227876 ThimaDRAFT_2753
MD M15 M15.011 vanX D-Ala-D-Ala dipeptidase MER0924432 ThimaDRAFT_4151
MD M74 unassigned family M74 unassigned peptidases MER0313046 ThimaDRAFT_3396
ME M16 M16.019 YMXG peptidase MER0390955 ThimaDRAFT_2656
ME M16 unassigned subfamily M16B unassigned peptidases MER0392194 ThimaDRAFT_2655
MF M17 M17.003 PepA aminopeptidase MER0289527 pepA ThimaDRAFT_2406
MG M24 M24.001 methionyl aminopeptidase 1 (Escherichia-type) MER0318905 map ThimaDRAFT_2160
MG M24 M24.004 aminopeptidase P (bacteria) MER0319194 ThimaDRAFT_1412
MH M20 unassigned subfamily M20A unassigned peptidases MER0848552 dapE
MH M20 unassigned subfamily M20A unassigned peptidases MER0843900 ThimaDRAFT_3108
MH M42 unassigned family M42 unassigned peptidases MER0364743 ThimaDRAFT_3445
MJ M38 M38.982 urease MER0859681 ureC
MM M50 unassigned subfamily M50B unassigned peptidases MER0897580 ThimaDRAFT_2152
MM M50 unassigned subfamily M50B unassigned peptidases MER0895165 ThimaDRAFT_2025
MO M23 non-peptidase homologue subfamily M23B non-peptidase homologues MER0479414
MO M23 non-peptidase homologue subfamily M23B non-peptidase homologues MER0479270
MO M23 unassigned subfamily M23B unassigned peptidases MER0389598 ThimaDRAFT_1031
MU M103 M103.001 TldD peptidase (Escherichia coli) MER0331898 ThimaDRAFT_0884
MU M103 M103.UNW family M103 non-peptidase homologues MER0239527 ThimaDRAFT_0885
PA S1 S01.274 DegQ peptidase MER0407248
PA S1 non-peptidase homologue family S1 non-peptidase homologues MER0488738 ThimaDRAFT_1511
PA S1 unassigned subfamily S1A unassigned peptidases MER0301494
PA S1 unassigned subfamily S1C unassigned peptidases MER0279894 ThimaDRAFT_3359
PA S1 unassigned subfamily S1C unassigned peptidases MER0276377 ThimaDRAFT_2057
PA S1 unassigned subfamily S1C unassigned peptidases MER0279123 ThimaDRAFT_0758
PA S1 unassigned subfamily S1C unassigned peptidases MER0406695
PA S1 unassigned subfamily S1C unassigned peptidases MER0407824
PA S1 unassigned subfamily S1E unassigned peptidases MER0407538
PA S1 unassigned family S1 unassigned peptidases MER0488737 ThimaDRAFT_1468
PB C44 C44.001 amidophosphoribosyltransferase precursor MER0454770
PB C44 C44.003 glutamate synthase (NADPH) large chain MER0459858
PB C44 non-peptidase homologue family C44 non-peptidase homologues MER0456715
PB C44 unassigned family C44 unassigned peptidases MER0459859
PB C44 unassigned family C44 unassigned peptidases MER0459860
PB C44 unassigned family C44 unassigned peptidases MER0459861
PB S45 S45.003 cephalosporin C acylase precursor MER0312231 ThimaDRAFT_2741
PB T1 T01.006 HslV component of HslUV peptidase MER0323558
PB T3 T03.001 gamma-glutamyltransferase 1 (bacterial-type) MER0307312 ThimaDRAFT_2651
PB T3 T03.013 gamma-glutamyltransferase (Synechocystis-type) MER0379420 ThimaDRAFT_1447
PC C26 C26.955 aminodeoxychorismate synthase, subunit II MER0436490
PC C26 C26.964 CTP synthetase MER0448323
PC C26 unassigned family C26 unassigned peptidases MER0443515
PC C26 unassigned family C26 unassigned peptidases MER0450727
PC C26 unassigned family C26 unassigned peptidases MER0441547
PC C26 unassigned family C26 unassigned peptidases MER0450630
PC C26 unassigned family C26 unassigned peptidases MER0449371
PC C56 C56.A06 DDB_G0276405 (Dictyostelium discoideum) MER0310962 ThimaDRAFT_2219
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0385297 ThimaDRAFT_2563
PD N10 unassigned family N10 unassigned peptide lyases MER0300310
PD N11 unassigned family N11 unassigned peptide lyases MER0300414
PE T5 T05.001 ornithine acetyltransferase precursor MER0307621 argJ ThimaDRAFT_1033
SB S8 non-peptidase homologue subfamily S8A non-peptidase homologues MER0982866 ThimaDRAFT_1777
SB S8 unassigned subfamily S8A unassigned peptidases MER0987469 ThimaDRAFT_1499
SB S53 S53.004 kumamolisin MER0275476 ThimaDRAFT_1777
SB S53 unassigned family S53 unassigned peptidases MER1358589
SC S9 unassigned subfamily S9B unassigned peptidases MER1001461 ThimaDRAFT_3732
SC S33 S33.001 prolyl aminopeptidase MER0307826 ThimaDRAFT_2743
SE S11 S11.007 penicillin-binding protein 4 (Neisseria-type) peptidase MER0352635 ThimaDRAFT_1824
SE S11 unassigned family S11 unassigned peptidases MER0351117 ThimaDRAFT_3995
SE S12 unassigned family S12 unassigned peptidases MER1011986 ThimaDRAFT_4077
SE S12 unassigned family S12 unassigned peptidases MER0354685 ThimaDRAFT_1821
SE S13 S13.003 D-Ala-D-Ala carboxypeptidase PBP3 MER1029660 ThimaDRAFT_3358
SF S24 S24.001 repressor LexA MER0375333 ThimaDRAFT_0217
SF S24 S24.001 repressor LexA MER0375690 ThimaDRAFT_1784
SF S24 S24.001 repressor LexA MER0375837 ThimaDRAFT_3971
SF S24 S24.003 UmuD protein MER0280081 ThimaDRAFT_1789
SF S24 non-peptidase homologue family S24 non-peptidase homologues MER1044484 ThimaDRAFT_2994
SF S24 unassigned family S24 unassigned peptidases MER1042527 ThimaDRAFT_1890
SF S26 S26.001 signal peptidase I MER0265640 ThimaDRAFT_4262
SF S26 non-peptidase homologue subfamily S26A non-peptidase homologues MER1047363 ThimaDRAFT_0383
SF S26 non-peptidase homologue subfamily S26A non-peptidase homologues MER1046905 ThimaDRAFT_4477
SJ S16 S16.001 Lon-A peptidase MER0299720
SJ S16 non-peptidase homologue family S16 non-peptidase homologues MER1030870 ThimaDRAFT_3431
SJ S16 unassigned family S16 unassigned peptidases MER1035387 ThimaDRAFT_4175
SJ S16 unassigned family S16 unassigned peptidases MER0361125 lon ThimaDRAFT_0975
SK S14 S14.001 peptidase Clp (type 1) MER0278890 clpP ThimaDRAFT_2286
SK S41 S41.001 C-terminal processing peptidase-1 MER0288513 ThimaDRAFT_1206
SK S41 S41.004 C-terminal processing peptidase-3 MER0337315 ThimaDRAFT_2564
SK S49 unassigned subfamily S49B unassigned peptidases MER0321443 ThimaDRAFT_2881
SK S49 unassigned subfamily S49B unassigned peptidases MER0321512 ThimaDRAFT_2895
ST S54 unassigned family S54 unassigned peptidases MER1077161 ThimaDRAFT_3338
U- U32 unassigned family U32 unassigned peptidases MER0403866

GENOME ANALYSIS: Comparison with 14 completely sequenced genomes from family Chromatiaceae
Family Comment
C82 lineage specific expansion (7 homologues)
G4 significant presence (1 homologues)
M103 significant decrease in homologues (2 homologues)
M16 significant decrease in homologues (2 homologues)
M24 significant decrease in homologues (2 homologues)
M74 significant presence (1 homologues)
N10 significant presence (1 homologues)
N11 significant presence (1 homologues)
S1 lineage specific expansion (10 homologues)
S9 significant decrease in homologues (1 homologues)
S12 significant presence (2 homologues)
S13 significant presence (1 homologues)
S24 significant presence (6 homologues)
S33 significant decrease in homologues (1 homologues)
S45 significant presence (1 homologues)
S53 significant presence (2 homologues)
U32 significant presence (1 homologues)

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