Limnobacter sp. MED105

Taxonomy
Taxonomy database identifier: 391597
Superkingdom		Bacteria
Phylum		Proteobacteria
Class		Betaproteobacteria
Order		Burkholderiales
Family		Burkholderiaceae
Genus		Limnobacter
Species		sp. MED105
Peptidase			View peptidase sequences from Limnobacter sp. MED105
Count of known and putative peptidases: 50, non-peptidase homologues 14
Completely sequences genomes from subspecies and strains				Protein coding genes
	To show all strains with completely sequenced genomes, click here.

Clan	Family	MEROPS ID	Peptidase or homologue (subtype)	MERNUM	Gene	Locus
A-	A39	A39.001	TseI g.p. (Aeromonas dhakensis)	MER1367745
AC	A8	unassigned	family A8 unassigned peptidases	MER0142237	lspA	LMED105_15064
AD	A24	A24.001	type 4 prepilin peptidase 1	MER0125189		LMED105_06903
CL	C82	unassigned	subfamily C82A unassigned peptidases	MER0738078	LMED105_12387
CO	C40	C40.004	spr peptidase	MER0120229		LMED105_03010
CO	C40	C40.004	spr peptidase	MER0170386
CO	C40	non-peptidase homologue	family C40 non-peptidase homologues	MER0170970
MA	M1	M01.005	alanyl aminopeptidase (bacterial-type)	MER0170870		LMED105_15668
MA	M3	unassigned	subfamily M3A unassigned peptidases	MER0103306		LMED105_12667
MA	M41	M41.001	FtsH peptidase	MER0105525	ftsH	LMED105_09592
MA	M48	M48.002	HtpX peptidase	MER0117270	htpX2	LMED105_02995
MA	M48	unassigned	subfamily M48A unassigned peptidases	MER0118743		LMED105_07743
MA	M48	unassigned	subfamily M48B unassigned peptidases	MER0144465	htpX1	LMED105_03947
MA	M61	M61.002	BcepAP aminopeptidase (Burkholderia cepacia)	MER0138976		LMED105_06703
MD	M15	M15.001	zinc D-Ala-D-Ala carboxypeptidase (Streptomyces-type)	MER0169813		LMED105_05307
ME	M16	M16.019	YMXG peptidase	MER0180645		LMED105_05982
ME	M16	non-peptidase homologue	family M16 non-peptidase homologues	MER0169937
ME	M16	unassigned	subfamily M16B unassigned peptidases	MER0169936
MF	M17	M17.003	PepA aminopeptidase	MER0105868	pepA	LMED105_07558
MG	M24	M24.001	methionyl aminopeptidase 1 (Escherichia-type)	MER0137424		LMED105_00255
MG	M24	non-peptidase homologue	family M24 non-peptidase homologues	MER0170572		LMED105_07488
MG	M24	unassigned	subfamily M24B unassigned peptidases	MER0105214		LMED105_07713
MH	M20	unassigned	family M20D unassigned peptidases	MER0164138		LMED105_06743
MH	M20	unassigned	family M20D unassigned peptidases	MER0170623		LMED105_07498
MM	M50	non-peptidase homologue	subfamily M50B non-peptidase homologues	MER0892609	LMED105_12307
MM	M50	unassigned	family M50 unassigned peptidases	MER0891808	LMED105_00215
MO	M23	M23.009	Mername-AA292 peptidase	MER0141854		LMED105_16163
MO	M23	non-peptidase homologue	subfamily M23B non-peptidase homologues	MER0479486
MO	M23	non-peptidase homologue	subfamily M23B non-peptidase homologues	MER0477803
MO	M23	unassigned	subfamily M23B unassigned peptidases	MER0170060		LMED105_06868
MS	M75	unassigned	family M75 unassigned peptidases	MER0109788		LMED105_10520
MU	M103	M103.001	TldD peptidase (Escherichia coli)	MER0170192
MU	M103	M103.UNW	family M103 non-peptidase homologues	MER0105804		LMED105_00485
NB	N6	N06.A01	FlhB protein (Escherichia coli)	MER0405313
NB	N6	unassigned	family N6 unassigned peptide lyases	MER0326919
PA	S1	unassigned	subfamily S1C unassigned peptidases	MER0407768	LMED105_13698
PA	S1	unassigned	subfamily S1C unassigned peptidases	MER0279746		LMED105_06297
PA	S1	unassigned	subfamily S1C unassigned peptidases	MER0406317
PA	S1	unassigned	subfamily S1C unassigned peptidases	MER0408307
PB	C44	C44.001	amidophosphoribosyltransferase precursor	MER0139558		LMED105_13328
PB	C44	C44.003	glutamate synthase (NADPH) large chain	MER0458835
PB	C44	non-peptidase homologue	family C44 non-peptidase homologues	MER0180691
PB	S45	S45.003	cephalosporin C acylase precursor	MER1063992	LMED105_06597
PB	S45	S45.004	acyl-homoserine lactone acylase	MER0108862		LMED105_04387
PB	T1	T01.006	HslV component of HslUV peptidase	MER0140710	hslV	LMED105_02605
PB	T3	T03.025	oxamate amidohydrolase proenzyme (Klebsiella pneumonia)	MER0107539		LMED105_14715
PC	C26	C26.955	aminodeoxychorismate synthase, subunit II	MER0436035
PC	C26	C26.957	GMP synthase	MER0442822	guaA
PC	C26	C26.964	CTP synthetase	MER0446976
PC	C26	unassigned	family C26 unassigned peptidases	MER0446548
PC	C26	unassigned	family C26 unassigned peptidases	MER0439925
PC	C26	unassigned	family C26 unassigned peptidases	MER0449280
PC	C56	non-peptidase homologue	family C56 non-peptidase homologues	MER0170007
PE	T5	T05.001	ornithine acetyltransferase precursor	MER0117862	argJ	LMED105_06878
SB	S8	unassigned	subfamily S8A unassigned peptidases	MER0169869		LMED105_05612
SB	S8	unassigned	subfamily S8A unassigned peptidases	MER0180842		LMED105_14133
SB	S8	unassigned	subfamily S8A unassigned peptidases	MER0170281		LMED105_09770
SB	S8	unassigned	subfamily S8A unassigned peptidases	MER0170508		LMED105_15923
SC	S9	unassigned	subfamily S9B unassigned peptidases	MER0998585	LMED105_15469
SC	S9	unassigned	subfamily S9B unassigned peptidases	MER0478440		LMED105_05167
SC	S9	unassigned	subfamily S9B unassigned peptidases	MER0490551		LMED105_09875
SC	S9	unassigned	family S9 unassigned peptidases	MER0210308		LMED105_09880
SC	S15	non-peptidase homologue	family S15 non-peptidase homologues	MER1026584	LMED105_05167
SC	S15	non-peptidase homologue	family S15 non-peptidase homologues	MER1020850	LMED105_09875
SC	S15	unassigned	family S15 unassigned peptidases	MER0209440		LMED105_06552
SC	S33	non-peptidase homologue	family S33 non-peptidase homologues	MER0209953
SC	S33	non-peptidase homologue	family S33 non-peptidase homologues	MER0209401
SC	S33	unassigned	family S33 unassigned peptidases	MER0144304		LMED105_00652
SC	S33	unassigned	family S33 unassigned peptidases	MER0210741
SC	S33	unassigned	family S33 unassigned peptidases	MER0214721
SC	S33	unassigned	family S33 unassigned peptidases	MER0490409
SE	S11	S11.007	penicillin-binding protein 4 (Neisseria-type) peptidase	MER0180973		LMED105_00592
SE	S11	unassigned	family S11 unassigned peptidases	MER0139559		LMED105_02680
SE	S12	S12.A17	lact-4 g.p. (Caenorhabditis elegans)	MER0171091
SE	S13	unassigned	family S13 unassigned peptidases	MER0139647		LMED105_16268
SF	S24	S24.001	repressor LexA	MER0119389	lexA	LMED105_13142
SF	S26	S26.001	signal peptidase I	MER0105298		LMED105_13708
SF	S26	unassigned	subfamily S26C unassigned peptidases	MER0171150		LMED105_00185
SJ	S16	non-peptidase homologue	family S16 non-peptidase homologues	MER1030454	LMED105_01323
SJ	S16	unassigned	family S16 unassigned peptidases	MER1324863
SK	S14	S14.001	peptidase Clp (type 1)	MER0118593	clpP	LMED105_01298
SK	S41	S41.004	C-terminal processing peptidase-3	MER0105215		LMED105_05322
SK	S49	unassigned	subfamily S49B unassigned peptidases	MER0105116		LMED105_13628
SS	S66	S66.002	murein tetrapeptidase LD-carboxypeptidase (Escherichia-type)	MER0163973	ldcA	LMED105_14178
U-	U32	U32.003	collagenase (Salmonella-type)	MER0142418		LMED105_02960
U-	U49	unassigned	family U49 unassigned peptidases	MER0122326		LMED105_04492

GENOME ANALYSIS: Comparison with 75 completely sequenced genomes from family Burkholderiaceae
Family	Comment
C82	significant presence (1 homologues)
M20	significant decrease in homologues (2 homologues)
M75	significant presence (1 homologues)
S49	significant decrease in homologues (1 homologues)
T3	significant decrease in homologues (1 homologues)
U49	significant presence (1 homologues)