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Herbaspirillum seropedicae

Taxonomy
Taxonomy database identifier: 964
Superkingdom Bacteria
Phylum Proteobacteria
Class Betaproteobacteria
Order Burkholderiales
Family Oxalobacteraceae
Genus Herbaspirillum
Species seropedicae
Peptidase View peptidase sequences from Herbaspirillum seropedicae
Count of known and putative peptidases: 100, non-peptidase homologues 50
Completely sequences genomes from subspecies and strains Protein coding genes

To show all strains with completely sequenced genomes, click here.

Clan Family MEROPS ID Peptidase or homologue (subtype) MERNUM Gene Link Locus Megabases
AC A8 unassigned family A8 unassigned peptidases MER0219620 lspA Hsero_1403
AD A24 A24.A10 gspO g.p. (Escherichia coli) MER0219583 pilD Hsero_0355
CA C39 non-peptidase homologue family C39 non-peptidase homologues MER0716625 cyaB
CL C82 unassigned subfamily C82A unassigned peptidases MER0739141 Hsero_1868
CO C40 C40.006 PgpA peptidase MER0219616 Hsero_1376
CO C40 unassigned family C40 unassigned peptidases MER0219689 Hsero_3328
G- G5 unassigned family G5 unassigned peptidases MER0938047 Hsero_3982
MA M1 M01.005 alanyl aminopeptidase (bacterial-type) MER0219699 pepN Hsero_3550
MA M3 M03.004 oligopeptidase A MER0219623 prlC Hsero_1450
MA M41 unassigned family M41 unassigned peptidases MER0219618 hflB Hsero_1383
MA M48 M48.002 HtpX peptidase MER0219637 htpX Hsero_1965
MA M48 M48.002 HtpX peptidase MER0219685 htpX Hsero_3280
MA M48 non-peptidase homologue family M48 non-peptidase homologues MER0219619 Hsero_1400
MA M48 unassigned subfamily M48A unassigned peptidases MER0219622 Hsero_1433
MA M48 unassigned subfamily M48C unassigned peptidases MER0219590 Hsero_0662
MA M48 unassigned subfamily M48C unassigned peptidases MER0219688 htpX Hsero_3300
MA M48 unassigned subfamily M48C unassigned peptidases MER0219690 Hsero_3346
MA M61 M61.002 BcepAP aminopeptidase (Burkholderia cepacia) MER0219705 Hsero_3922
MD M15 non-peptidase homologue subfamily M15C non-peptidase homologues MER0219575 Hsero_0229
MD M15 unassigned subfamily M15C unassigned peptidases MER0219592 Hsero_0761
MD M15 unassigned subfamily M15C unassigned peptidases MER0219708 Hsero_4026
ME M16 M16.019 YMXG peptidase MER0219712 Hsero_4145
ME M16 non-peptidase homologue subfamily M16B non-peptidase homologues MER0219711 Hsero_4143
ME M16 non-peptidase homologue family M16 non-peptidase homologues MER0219694 Hsero_3461
ME M16 unassigned subfamily M16B unassigned peptidases MER0219693 Hsero_3461
ME M16 unassigned subfamily M16B unassigned peptidases MER0219710 Hsero_4143
MF M17 M17.003 PepA aminopeptidase MER0219671 pepA Hsero_3109
MG M24 M24.001 methionyl aminopeptidase 1 (Escherichia-type) MER0219601 map Hsero_1025
MG M24 M24.001 methionyl aminopeptidase 1 (Escherichia-type) MER0219645 map Hsero_2177
MG M24 M24.004 aminopeptidase P (bacteria) MER0081970 pepP Hsero_0702
MH M20 non-peptidase homologue family M20 non-peptidase homologues MER0219724 Hsero_4540
MH M20 non-peptidase homologue family M20 non-peptidase homologues MER0219729 Hsero_4742
MH M20 unassigned subfamily M20A unassigned peptidases MER0219644 dapE Hsero_2160
MH M20 unassigned subfamily M20A unassigned peptidases MER0219678 argE Hsero_3212
MH M20 unassigned family M20D unassigned peptidases MER0219594 Hsero_0826
MH M20 unassigned family M20D unassigned peptidases MER0219608 hipO Hsero_1139
MH M20 unassigned family M20D unassigned peptidases MER0219673 abgB Hsero_3177
MH M20 unassigned family M20 unassigned peptidases MER0219662 Hsero_2776
MH M20 unassigned family M20 unassigned peptidases MER0219674 Hsero_3178
MH M20 unassigned family M20 unassigned peptidases MER0219680 Hsero_3258
MH M20 unassigned family M20 unassigned peptidases MER0219726 Hsero_4654
MJ M38 M38.973 dihydropyrimidinase MER0865676 ndeD
MJ M38 M38.982 urease MER0219728 ureC Hsero_4721
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0219586 ssnA Hsero_0463
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0219587 pyrX Hsero_0469
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0219589 ndeD Hsero_0570
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0219681 atzB Hsero_3260
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0219682 guaD Hsero_3265
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0219725 nagA Hsero_4555
MJ M38 unassigned family M38 unassigned peptidases MER0219576 Hsero_0234
MM M50 unassigned subfamily M50B unassigned peptidases MER0219683 Hsero_3278
MM M50 unassigned family M50 unassigned peptidases MER0219646 Hsero_2185
MN M55 unassigned family M55 unassigned peptidases MER0219631 dppA Hsero_1847
MO M23 M23.009 Mername-AA292 peptidase MER0219584 Hsero_0406
MO M23 non-peptidase homologue subfamily M23B non-peptidase homologues MER0479449 yibP Hsero_0164
MO M23 non-peptidase homologue subfamily M23B non-peptidase homologues MER0478230 nlpD Hsero_2960
MO M23 non-peptidase homologue subfamily M23B non-peptidase homologues MER0219703 nlpD Hsero_3801
MO M23 unassigned subfamily M23B unassigned peptidases MER0219581 Hsero_0345
MT M81 unassigned family M81 unassigned peptidases MER0223223 Hsero_4655
MU M103 M103.001 TldD peptidase (Escherichia coli) MER0219621 tldD Hsero_1423
MU M103 M103.001 TldD peptidase (Escherichia coli) MER0219663 tldD Hsero_2814
MU M103 M103.950 microcin-processing peptidase 1 homologue MER0219633 pmbA Hsero_1857
MU M103 M103.950 microcin-processing peptidase 1 homologue MER0219664 tldE Hsero_2815
NB N6 N06.A01 FlhB protein (Escherichia coli) MER0219639 flhB Hsero_2025
NB N6 unassigned family N6 unassigned peptide lyases MER0219593 hrcU Hsero_0797
PA S1 unassigned subfamily S1C unassigned peptidases MER0219609 Hsero_1154
PA S1 unassigned subfamily S1C unassigned peptidases MER0219635 degQ Hsero_1932
PA S1 unassigned subfamily S1C unassigned peptidases MER0219659 degQ Hsero_2727
PA S1 unassigned subfamily S1C unassigned peptidases MER0219709 degQ Hsero_4052
PA S1 unassigned subfamily S1C unassigned peptidases MER0219719 degQ Hsero_4395
PA S1 unassigned family S1 unassigned peptidases MER0219610 Hsero_1245
PB C44 C44.001 amidophosphoribosyltransferase precursor MER0219687 purF Hsero_3286
PB C44 C44.001 amidophosphoribosyltransferase precursor MER0219715 asnB Hsero_4212
PB C44 C44.003 glutamate synthase (NADPH) large chain MER0458213 gltB Hsero_3924
PB C44 non-peptidase homologue family C44 non-peptidase homologues MER0219720 glmS Hsero_4426
PB C44 unassigned family C44 unassigned peptidases MER0219660 asnB Hsero_2749
PB C44 unassigned family C44 unassigned peptidases MER0219714 asnB Hsero_4200
PB C44 unassigned family C44 unassigned peptidases MER0219716 asnB Hsero_4215
PB C44 unassigned family C44 unassigned peptidases MER0219730 Hsero_4804
PB T1 T01.006 HslV component of HslUV peptidase MER0219573 hslV Hsero_0182
PB T2 unassigned family T2 unassigned peptidases MER0219629 Hsero_1841
PB T3 T03.001 gamma-glutamyltransferase 1 (bacterial-type) MER0219605 ggt Hsero_1089
PB T3 T03.025 oxamate amidohydrolase proenzyme (Klebsiella pneumonia) MER0219702 ggt Hsero_3781
PC C26 C26.955 aminodeoxychorismate synthase, subunit II MER0219704 trpG Hsero_3894
PC C26 C26.964 CTP synthetase MER0449986 pyrG Hsero_2772
PC C26 C26.965 imidazole glycerol phosphate synthase subunit HisH MER0445554 hisH Hsero_4203
PC C26 non-peptidase homologue family C26 non-peptidase homologues MER0219567 Hsero_0044
PC C26 unassigned family C26 unassigned peptidases MER0219588 Hsero_0509
PC C26 unassigned family C26 unassigned peptidases MER0219617 carA Hsero_1378
PC C26 unassigned family C26 unassigned peptidases MER0219648 guaA Hsero_2206
PC C26 unassigned family C26 unassigned peptidases MER0219650 Hsero_2235
PC C26 unassigned family C26 unassigned peptidases MER0445426 hisH Hsero_4065
PC C26 unassigned family C26 unassigned peptidases MER0219718 Hsero_4392
PC C56 C56.001 PfpI peptidase MER0219652 Hsero_2267
PC C56 C56.972 phosphoribosylformylglycinamidine synthase MER0219651 purL Hsero_2241
PC C56 C56.A06 DDB_G0276405 (Dictyostelium discoideum) MER0219670 Hsero_3070
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0181371 HS248.0306
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0219697 Hsero_3502
PE P1 unassigned family P01 unassigned peptidases MER0219630 dmpA Hsero_1846
PE T5 T05.001 ornithine acetyltransferase precursor MER0219582 argJ Hsero_0349
SB S8 non-peptidase homologue subfamily S8A non-peptidase homologues MER0219654 Hsero_2417
SB S8 unassigned subfamily S8A unassigned peptidases MER0219675 Hsero_3186
SB S8 unassigned subfamily S8A unassigned peptidases MER0219696 Hsero_3472
SC S9 S09.940 S-formylglutathione hydrolase FrmB (Escherichi coli) MER0219658 Hsero_2712
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0219580 Hsero_0317
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0219585 Hsero_0456
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0219606 Hsero_1114
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0219656 lpqC Hsero_2558
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0219661 Hsero_2757
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0219701 Hsero_3656
SC S9 unassigned family S9 unassigned peptidases MER0219600 Hsero_1004
SC S9 unassigned family S9 unassigned peptidases MER0479582 Hsero_1569
SC S9 unassigned family S9 unassigned peptidases MER0219627 Hsero_1679
SC S9 unassigned family S9 unassigned peptidases MER0219632 Hsero_1852
SC S9 unassigned family S9 unassigned peptidases MER0219653 Hsero_2344
SC S9 unassigned family S9 unassigned peptidases MER0219655 Hsero_2468
SC S9 unassigned family S9 unassigned peptidases MER0219672 Hsero_3110
SC S15 non-peptidase homologue family S15 non-peptidase homologues MER1023091 Hsero_1569
SC S33 S33.001 prolyl aminopeptidase MER0219677 pip Hsero_3191
SC S33 S33.A54 YnbC protein (Escherichia coli) MER0219568 Hsero_0079
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0219624 Hsero_1484
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0219625 mhpC Hsero_1606
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0219698 Hsero_3541
SC S33 unassigned family S33 unassigned peptidases MER0219570 metX Hsero_0091
SC S33 unassigned family S33 unassigned peptidases MER0219602 metX Hsero_1069
SC S33 unassigned family S33 unassigned peptidases MER0219614 catD Hsero_1303
SC S33 unassigned family S33 unassigned peptidases MER0219615 Hsero_1324
SC S33 unassigned family S33 unassigned peptidases MER0219628 Hsero_1721
SC S33 unassigned family S33 unassigned peptidases MER0219638 Hsero_1971
SC S33 unassigned family S33 unassigned peptidases MER0219679 pldB Hsero_3231
SC S33 unassigned family S33 unassigned peptidases MER0219686 Hsero_3282
SC S33 unassigned family S33 unassigned peptidases MER0219700 Hsero_3595
SC S33 unassigned family S33 unassigned peptidases MER0219706 Hsero_3946
SC S33 unassigned family S33 unassigned peptidases MER0219707 pcaD Hsero_3989
SC S33 unassigned family S33 unassigned peptidases MER0219723 Hsero_4517
SC S33 unassigned family S33 unassigned peptidases MER0219727 Hsero_4696
SE S11 S11.002 murein-DD-endopeptidase MER0219626 dacC Hsero_1644
SE S11 S11.007 penicillin-binding protein 4 (Neisseria-type) peptidase MER0219721 pbpG Hsero_4501
SE S11 S11.A01 penP g.p. (Bacillus subtilis) MER0219691 penP Hsero_3349
SE S11 unassigned family S11 unassigned peptidases MER0219717 dacC Hsero_4308
SE S12 S12.A13 lact-7 g.p. (Caenorhabditis elegans) MER0480626
SE S12 S12.A13 lact-7 g.p. (Caenorhabditis elegans) MER0219647 Hsero_2198
SE S12 unassigned family S12 unassigned peptidases MER0219667 Hsero_3031
SE S12 unassigned family S12 unassigned peptidases MER0219713 Hsero_4178
SE S13 S13.003 D-Ala-D-Ala carboxypeptidase PBP3 MER0219692 dacB Hsero_3369
SE S13 unassigned family S13 unassigned peptidases MER1314434
SF S24 S24.001 repressor LexA MER0219641 lexA Hsero_2073
SF S24 S24.003 UmuD protein MER0219695 umuD Hsero_3470
SF S24 non-peptidase homologue family S24 non-peptidase homologues MER0219574 Hsero_0222
SF S26 S26.001 signal peptidase I MER0219636 lepB Hsero_1935
SF S26 S26.026 PA1303 peptidase (Pseudomonas sp.) MER0091759 lepB Hsero_2480
SH S73 S73.001 gpO peptidase (Enterobacteria phage P2) MER0219596 Hsero_0908
SJ S16 S16.001 Lon-A peptidase MER0219657 lon Hsero_2580
SJ S16 S16.A04 DNA repair protein RadA (Escherichia coli) MER0219643 radA Hsero_2151
SJ S16 non-peptidase homologue family S16 non-peptidase homologues MER0219569 Hsero_0081
SK S14 S14.001 peptidase Clp (type 1) MER0138006 clpP Hsero_2582
SK S41 unassigned subfamily S41A unassigned peptidases MER0219572 prc Hsero_0165
SK S49 unassigned subfamily S49B unassigned peptidases MER0219634 Hsero_1889
SS S66 S66.002 murein tetrapeptidase LD-carboxypeptidase (Escherichia-type) MER0219649 ldcA Hsero_2213

GENOME ANALYSIS: Comparison with 20 completely sequenced genomes from family Oxalobacteraceae
Family Comment
C39 significant presence (1 homologues)
C44 lineage specific expansion (8 homologues)
C56 significant presence (5 homologues)
C82 significant presence (1 homologues)
G5 significant presence (1 homologues)
M103 lineage specific expansion (4 homologues)
M16 lineage specific expansion (5 homologues)
M38 lineage specific expansion (9 homologues)
M55 significant presence (1 homologues)
M81 significant presence (1 homologues)
P1 significant presence (1 homologues)
S1 lineage specific expansion (6 homologues)
S9 lineage specific expansion (14 homologues)
S15 significant presence (1 homologues)
S33 lineage specific expansion (18 homologues)
S73 significant presence (1 homologues)
T2 significant presence (1 homologues)

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