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Literature for peptidase S11.008: penicillin-binding protein 5-type peptidase

Summary Alignment Tree Sequences Sequence features Distribution Structure Literature Substrates Pharma

(Topics flags: A Assay, S Structure, P Specificity, I Inhibitor, E Expression. To select only the references relevant to a single topic, click the link above. See explanation.)

    2022
  1. Park,S.H., Choi,U., Ryu,S.H., Lee,H.B., Lee,J.W. and Lee,C.R.
    Divergent Effects of Peptidoglycan Carboxypeptidase DacA on Intrinsic beta-Lactam and Vancomycin Resistance
    Microbiol Spectr10, e0173422-e0173422. PubMed  Europe PubMed DOI
    2. 2021
  2. Mallick,S., Kiran,S., Maiti,T.K. and Ghosh,A.S.
    PBP4 and PBP5 are involved in regulating exopolysaccharide synthesis during Escherichia coli biofilm formation
    Microbiology (Reading) PubMed  Europe PubMed DOI
    3. 2019
  3. Yang,H., Hu,J., Lu,X., Wang,F., Shen,W., Hu,W., Wang,L., Chen,X. and Liu,L.
    Improving extracellular protein production in Escherichia coli by overexpressing D,D-carboxypeptidase to perturb peptidoglycan network synthesis and structure
    Appl Microbiol Biotechnol103, 793-806. PubMed  Europe PubMed DOI  E
    4. 2015
  4. Moll,A., Dorr,T., Alvarez,L., Davis,B.M., Cava,F. and Waldor,M.K.
    A D, D-carboxypeptidase is required for Vibrio cholerae halotolerance
    Environ Microbiol17, 527-540. PubMed  Europe PubMed DOI
    5. 2012
  5. Dzhekieva,L., Kumar,I. and Pratt,R.F.
    Inhibition of bacterial DD-peptidases (penicillin-binding proteins) in membranes and in vivo by peptidoglycan-mimetic boronic acids
    Biochemistry51, 2804-2811. PubMed  Europe PubMed DOI  I
  6. Kumarasiri,M., Fisher,J.F. and Mobashery,S.
    Penicillin-binding protein 5 of Escherichia coli
    [ISSN:978-0-12-407742-3]3, 3474-3480. DOI
    7. 2011
  7. Chowdhury,C. and Ghosh,A.S.
    Differences in active-site microarchitecture explain the dissimilar behaviors of PBP5 and 6 in Escherichia coli
    J Mol Graph Model29, 650-656. PubMed  Europe PubMed DOI
  8. Nemmara,V.V., Dzhekieva,L., Subarno Sarkar,K., Adediran,S.A., Duez,C., Nicholas,R.A. and Pratt,R.F.
    Substrate specificity of low-molecular mass bacterial dd-peptidases
    Biochemistry50, 10091-10101. PubMed  Europe PubMed DOI  P
    9. 2010
  9. Nicola,G., Tomberg,J., Pratt,R.F., Nicholas,R.A. and Davies,C.
    Crystal structures of covalent complexes of beta-lactam antibiotics with Escherichia coli penicillin-binding protein 5: toward an understanding of antibiotic specificity
    Biochemistry49, 8094-8104. PubMed  Europe PubMed DOI  S
  10. O'Daniel,P.I., Zajicek,J., Zhang,W., Shi,Q., Fisher,J.F. and Mobashery,S.
    Elucidation of the structure of the membrane anchor of penicillin-binding protein 5 of Escherichia coli
    J Am Chem Soc132, 4110-4118. PubMed  Europe PubMed DOI  S
  11. Potluri,L., Karczmarek,A., Verheul,J., Piette,A., Wilkin,J.M., Werth,N., Banzhaf,M., Vollmer,W., Young,K.D., Nguyen-Disteche,M. and den Blaauwen,T.
    Septal and lateral wall localization of PBP5, the major D,D-carboxypeptidase of Escherichia coli, requires substrate recognition and membrane attachment
    Mol Microbiol77, 300-323. PubMed  Europe PubMed DOI
    12. 2008
  12. Ghosh,A.S., Chowdhury,C. and Nelson,D.E.
    Physiological functions of D-alanine carboxypeptidases in Escherichia coli
    Trends Microbiol16, 309-317. PubMed  Europe PubMed DOI
  13. Sauvage,E., Powell,A.J., Heilemann,J., Josephine,H.R., Charlier,P., Davies,C. and Pratt,R.F.
    Crystal structures of complexes of bacterial DD-peptidases with peptidoglycan-mimetic ligands: the substrate specificity puzzle
    J Mol Biol381, 383-393. PubMed  Europe PubMed DOI  S
  14. Shi,Q., Meroueh,S.O., Fisher,J.F. and Mobashery,S.
    Investigation of the mechanism of the cell wall dd-carboxypeptidase reaction of penicillin-binding protein 5 of Escherichia coli by quantum mechanics/molecular mechanics calculations
    J Am Chem Soc130, 9293-9303. PubMed  Europe PubMed DOI
    15. 2007
  15. Zhang,W., Shi,Q., Meroueh,S.O., Vakulenko,S.B. and Mobashery,S.
    Catalytic mechanism of penicillin-binding protein 5 of Escherichia coli
    Biochemistry46, 10113-10121. PubMed  Europe PubMed DOI
    16. 2006
  16. Priyadarshini,R., Popham,D.L. and Young,K.D.
    Daughter cell separation by penicillin-binding proteins and peptidoglycan amidases in Escherichia coli
    J Bacteriol188, 5345-5355. PubMed  Europe PubMed DOI
    17. 2005
  17. Nicola,G., Fedarovich,A., Nicholas,R.A. and Davies,C.
    A large displacement of the SXN motif of Cys115-modified penicillin-binding protein 5 from Escherichia coli
    Biochem J392, 55-63. PubMed  Europe PubMed DOI
  18. Nicola,G., Peddi,S., Stefanova,M., Nicholas,R.A., Gutheil,W.G. and Davies,C.
    Crystal structure of Escherichia coli penicillin-binding protein 5 bound to a tripeptide boronic acid inhibitor: a role for Ser-110 in deacylation
    Biochemistry44, 8207-8217. PubMed  Europe PubMed DOI  S  I
    19. 2004
  19. [YEAR:6-2-2004]Hesek,D., Suvorov,M., Morio,K., Lee,M., Brown,S., Vakulenko,S.B. and Mobashery,S.
    Synthetic peptidoglycan substrates for penicillin-binding protein 5 of Gram-negative bacteria
    J Org Chem69, 778-784. PubMed  Europe PubMed DOI
    20. 2003
  20. Nicholas,R.A., Krings,S., Tomberg,J., Nicola,G. and Davies,C.
    Crystal structure of wild-type penicillin-binding protein 5 from Escherichia coli: implications for deacylation of the acyl-enzyme complex
    J Biol Chem278, 52826-52833. PubMed  Europe PubMed DOI  S
    21. 2002
  21. Stefanova,M.E., Davies,C., Nicholas,R.A. and Gutheil,W.G.
    pH, inhibitor, and substrate specificity studies on Escherichia coli penicillin-binding protein 5
    Biochim Biophys Acta1597, 292-300. PubMed  Europe PubMed DOI
    22. 2001
  22. Beadle,B.M., Nicholas,R.A. and Shoichet,B.K.
    Interaction energies between beta-lactam antibiotics and E. coli penicillin-binding protein 5 by reversible thermal denaturation
    Protein Sci10, 1254-1259. PubMed  Europe PubMed DOI
  23. [YEAR:5-1-2001]Davies,C., White,S.W. and Nicholas,R.A.
    Crystal structure of a deacylation-defective mutant of penicillin-binding protein 5 at 2.3-A resolution
    J Biol Chem276, 616-623. PubMed  Europe PubMed DOI  S
  24. Nelson,D.E. and Young,K.D.
    Contributions of PBP 5 and DD-carboxypeptidase penicillin binding proteins to maintenance of cell shape in Escherichia coli
    J Bacteriol183, 3055-3064. PubMed  Europe PubMed DOI
    25. 2000
  25. Nelson,D.E. and Young,K.D.
    Penicillin binding protein 5 affects cell diameter, contour, and morphology of Escherichia coli
    J Bacteriol182, 1714-1721. PubMed  Europe PubMed DOI
    26. 1998
  26. [YEAR:15-5-1998]Gutheil,W.G.
    A sensitive equilibrium-based assay for D-lactate using D-lactate dehydrogenase: application to penicillin-binding protein/DD-carboxypeptidase activity assays
    Anal Biochem259, 62-67. PubMed  Europe PubMed DOI  A
    27. 1994
  27. [YEAR:15-10-1994]van der Linden,M.P., de Haan,L., Dideberg,O. and Keck,W.
    Site-directed mutagenesis of proposed active-site residues of penicillin-binding protein 5 from Escherichia coli
    Biochem J303, 357-362. PubMed  Europe PubMed
    28. 1993
  28. [YEAR:15-1-1993]van der Linden,M.P., de Haan,L. and Keck,W.
    Domain organization of penicillin-binding protein 5 from Escherichia coli analysed by C-terminal truncation
    Biochem J289, 593-598. PubMed  Europe PubMed
    29. 1992
  29. [YEAR:5-6-1992]Malhotra,K.T. and Nicholas,R.A.
    Substitution of lysine 213 with arginine in penicillin-binding protein 5 of Escherichia coli abolishes D-alanine carboxypeptidase activity without affecting penicillin binding
    J Biol Chem267, 11386-11391. PubMed  Europe PubMed
  30. [YEAR:15-2-1992]van der Linden,M.P., Mottl,H. and Keck,W.
    Cytoplasmic high-level expression of a soluble, enzymatically active form of the Escherichia coli penicillin-binding protein 5 and purification by dye chromatography
    Eur J Biochem204, 197-202. PubMed  Europe PubMed
    31. 1990
  31. [YEAR:20-6-1990]Phoenix,D.A. and Pratt,J.M.
    pH-induced insertion of the amphiphilic alpha-helical anchor of Escherichia coli penicillin-binding protein 5
    Eur J Biochem190, 365-369. PubMed  Europe PubMed DOI
  32. Phoenix,D.A.
    Investigation into structural features of the Escherichia coli penicillin-binding protein 5 C-terminal anchor
    Biochem Soc Trans18, 948-949. PubMed  Europe PubMed
    33. 1988
  33. [YEAR:15-1-1988]Ferreira,L.C., Schwarz,U., Keck,W., Charlier,P., Dideberg,O. and Ghuysen,J.M.
    Properties and crystallization of a genetically engineered, water-soluble derivative of penicillin-binding protein 5 of Escherichia coli K12
    Eur J Biochem171, 11-16. PubMed  Europe PubMed
  34. [YEAR:5-2-1988]Nicholas,R.A. and Strominger,J.L.
    Site-directed mutants of a soluble form of penicillin-binding protein 5 from Escherichia coli and their catalytic properties
    J Biol Chem263, 2034-2040. PubMed  Europe PubMed
    35. 1987
  35. Jackson,M.E. and Pratt,J.M.
    An 18 amino acid amphiphilic helix forms the membrane-anchoring domain of the Escherichia coli penicillin-binding protein 5
    Mol Microbiol1, 23-28. PubMed  Europe PubMed
    36. 1986
  36. Pratt,J.M., Jackson,M.E. and Holland,I.B.
    The C terminus of penicillin-binding protein 5 is essential for localisation to the E. coli inner membrane
    EMBO J5, 2399-2405. PubMed  Europe PubMed
    37. 1985
  37. Broome-Smith,J.K.
    Construction of a mutant of Escherichia coli that has deletions of both the penicillin-binding protein 5 and 6 genes
    J Gen Microbiol131, 2115-2118. PubMed  Europe PubMed
  38. [YEAR:25-5-1985]Nicholas,R.A., Ishino,F., Park,W., Matsuhashi,M. and Strominger,J.L.
    Purification and sequencing of the active site tryptic peptide from penicillin-binding protein 5 from the dacA mutant strain of Escherichia coli (TMRL 1222)
    J Biol Chem260, 6394-6397. PubMed  Europe PubMed
    39. 1984
  39. Broome-Smith,J. and Spratt,B.G.
    An amino acid substitution that blocks the deacylation step in the enzyme mechanism of penicillin-binding protein 5 of Escherichia coli
    FEBS Lett165, 185-189. PubMed  Europe PubMed
    40. 1980
  40. Amanuma,H. and Strominger,J.L.
    Purification and properties of penicillin-binding proteins 5 and 6 from Escherichia coli membranes
    J Biol Chem255, 11173-11180. PubMed  Europe PubMed
    41. 1946
  41. Duguid,J.P.
    The sensitivity of bacteria to the action of penicillin
    Edinb Med J53, 401-412. PubMed  Europe PubMed

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