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grant_code:"Intramural"

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Current Database

  • EMDB [11]

Current status

  • REL [11]

Sample type

  • Complex [11]
  • Protein [11]
  • Ligand [6]

Organism

  • Severe acute respiratory syndrome coronavirus [8]
  • Homo sapiens [7]
  • Salmonella enterica [2]
  • Human immunodeficiency virus 1 [1]
  • Sus scrofa [1]

EM Method

  • Single-particle [11]

Resolution

  • ≥ 2Å and < 3Å [1]
  • ≥ 3Å and < 4Å [8]
  • ≥ 4Å and < 5Å [1]
  • ≥ 5Å and < 6Å [1]

Model molecular weight

  • 50-100 kDa [3]
  • 100-250 kDa [2]
  • 250-500 kDa [2]
  • 500-1000 kDa [3]
  • 2-5 MDa [1]

Release Date

  • 2024 [2]
  • 2023 [1]
  • 2022 [6]
  • 2021 [2]

Author by name

  • Graham BS [8]
  • Kwong PD [8]
  • Leung K [8]
  • Liu T [8]
  • Mascola JR [8]
  • Misasi J [8]
  • Olia AS [8]
  • Pegu A [8]
  • Shi W [8]
  • Stephens T [8]
  • Sullivan NJ [8]
  • Talana CA [8]
  • Teng IT [8]
  • Tsybovsky Y [8]
  • Wang L [8]
  • Yang ES [8]
  • Zhang B [8]
  • Zhang Y [8]
  • Zhou T [8]
  • Choe M [7]
  • Chen M [5]
  • Creanga A [5]
  • Harris DR [5]
  • Jenkins C [5]
  • Stancofski ED [5]
  • Tsybovsky T [5]
  • Abiona OM [3]
  • Baric RS [3]
  • Cale EM [3]
  • Chang LA [3]
  • Corbett KS [3]
  • Darko S [3]
  • Dipiazza AT [3]
  • Doria-rose NA [3]
  • Douek DC [3]
  • Gaudinski MR [3]
  • Gordon IJ [3]
  • Hatcher C [3]
  • Ledgerwood JE [3]
  • Martinez DR [3]
  • Mason RD [3]
  • Mcdermott AB [3]
  • Narpala SR [3]
  • Novik L [3]
  • Phung E [3]
  • Roederer M [3]
  • Ruckwardt TJ [3]
  • Schramm CA [3]
  • Stringham CD [3]
  • Widge AT [3]
  • Antia A [2]
  • Caesar JJE [2]
  • Chevance FFV [2]
  • Davis RL [2]
  • Deme JC [2]
  • Furlong EJ [2]
  • Hait SH [2]
  • Henry AR [2]
  • Hermanus T [2]
  • Hughes KT [2]
  • Johnson S [2]
  • Kgagudi P [2]
  • Laboune F [2]
  • Lea SM [2]
  • Moore PL [2]
  • Nazzari AF [2]
  • O Connell S [2]
  • O Dell S [2]
  • Oloniniyi OK [2]
  • Schmidt SD [2]
  • Wagner DA [2]
  • Eren E [1]
  • Nazzari A [1]
  • Oloninyi OK [1]
  • Palmer I [1]
  • Randazzo D [1]
  • Ransier A [1]
  • Sackett DL [1]
  • Wagner D [1]
  • Watts NR [1]
  • Wingfield PT [1]

Author by ORCID

  • Misasi J [7]
  • Graham BS [7]
  • Zhang B [7]
  • Talana CA [7]
  • Zhou T [7]
  • Zhang Y [7]
  • Wang L [7]
  • Leung K [7]
  • Olia AS [7]
  • Yang ES [7]
  • Pegu A [7]
  • Mascola JR [5]
  • Tsybovsky Y [5]
  • Kwong PD [5]
  • Creanga A [5]
  • Jenkins C [5]
  • Harris DR [5]
  • Teng IT [5]
  • Sullivan NJ [5]
  • Liu T [5]
  • Chen M [5]
  • Shi W [5]
  • Choe M [5]
  • Hughes KT [2]
  • Wagner DA [2]
  • Gordon IJ [2]
  • Baric RS [2]
  • Mason RD [2]
  • Novik L [2]
  • Roederer M [2]
  • Widge AT [2]
  • Hait SH [2]
  • Moore PL [2]
  • Deme JC [2]
  • Lea SM [2]
  • Phung E [2]
  • Ruckwardt TJ [2]
  • Oloniniyi OK [2]
  • Narpala SR [2]
  • Sullivan NJ [2]
  • Corbett KS [2]
  • Abiona OM [2]
  • Martinez DR [2]
  • Chang LA [2]
  • Gaudinski MR [2]
  • Mascola JR [2]
  • Doria-rose NA [2]
  • Schmidt SD [2]
  • Johnson S [2]
  • Furlong EJ [2]
  • Cale EM [2]
  • Darko S [2]
  • Choe M [2]
  • Stringham CD [2]
  • Mcdermott AB [2]
  • Nazzari AF [2]
  • Dipiazza AT [2]
  • Kwong PD [2]
  • Eren E [1]

Journal

  • SCIENCE [7]
  • NAT MICROBIOL [2]
  • BIORXIV [1]
  • STRUCTURE [1]

Software

  • CRYOSPARC [7]
  • CISTEM [1]

Microscope

  • FEI TITAN KRIOS [11]

Electron Source

  • FIELD EMISSION GUN [11]

Film or detector model

  • OTHER [8]
  • GATAN K3 BIOQUANTUM 6K X 4K [2]
  • GATAN K2 BASE 4K X 4K [1]

External links

  • PDB [11]
  • UniProt [11]
  • AlphaFold DB [10]
  • InterPro [10]
  • PDBe-Kb [10]
  • Pfam [10]
  • Gene Ontology [7]
  • ChEBI [6]
  • ChEMBL [6]
  • Complex Portal [4]
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Showing 1 - 10 of 11. Page 1 of 2
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EMD-42376
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3D View
Cryo-EM structure of a single subunit of a Counterclockwise-locked form of the Salmonella enterica Typhimurium flagellar C-ring.
Release date: Jan. 24, 2024
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8umd
Q-score: 0.329

Johnson S, Deme JC, Furlong EJ, Caesar JJE, Chevance FFV, Hughes KT, Lea SM

Nat Microbiol (2024) 9 pp. 1282-1292 [ Pubmed: 38459206 DOI: doi:10.1038/s41564-024-01630-z ]

EMD-42387
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3D View
Cryo-EM structure of a single subunit of a Clockwise-locked form of the Salmonella enterica Typhimurium flagellar C-ring.
Release date: Jan. 24, 2024
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 8umx
Q-score: 0.282

Johnson S, Deme JC, Furlong EJ, Caesar JJE, Chevance FFV, Hughes KT, Lea SM

Nat Microbiol (2024) 9 pp. 1282-1292 [ Pubmed: 38459206 DOI: doi:10.1038/s41564-024-01630-z ]

EMD-26257
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HIV-1 Rev in complex with tubulin
Release date: Aug. 23, 2023
Resolution: 3.53 Å
EM Method: Single-particle
Fitted PDBs: 7u0f
Q-score: 0.344

Eren E, Watts NR, Randazzo D, Palmer I, Sackett DL, Wingfield PT

Structure (2023) 31 pp. 1233- [ DOI: doi:10.1016/j.str.2023.07.009 Pubmed: 37572662 ]

EMD-25794
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Cryo-EM structure of SARS-CoV-2 spike in complex with antibodies B1-182.1 and A19-61.1
Release date: March 30, 2022
Resolution: 2.83 Å
EM Method: Single-particle
Fitted PDBs: 7tb8
Q-score: 0.41

Zhou T, Wang L, Misasi J, Pegu A, Zhang Y, Harris DR, Olia AS, Talana CA, Yang ES, Chen M, Choe M, Shi W, Teng IT, Creanga A, Jenkins C, Leung K, Liu T, Stancofski ED, Stephens T, Zhang B, Tsybovsky Y, Graham BS, Mascola JR, Sullivan NJ, Kwong PD

Science (2022) 376 pp. eabn8897-eabn8897 [ DOI: doi:10.1126/science.abn8897 Pubmed: 35324257 ]

EMD-25797
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3D View
Locally refined region of SARS-CoV-2 spike in complex with antibodies B1-182.1 and A19-61.1
Release date: March 30, 2022
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7tbf
Q-score: 0.498

Zhou T, Wang L, Misasi J, Pegu A, Zhang Y, Harris DR, Olia AS, Talana CA, Yang ES, Chen M, Choe M, Shi W, Teng IT, Creanga A, Jenkins C, Leung K, Liu T, Stancofski ED, Stephens T, Zhang B, Tsybovsky Y, Graham BS, Mascola JR, Sullivan NJ, Kwong PD

Science (2022) 376 pp. eabn8897-eabn8897 [ DOI: doi:10.1126/science.abn8897 Pubmed: 35324257 ]

EMD-25806
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Locally refined region of SARS-CoV-2 spike in complex with antibody A19-46.1
Release date: March 30, 2022
Resolution: 5.08 Å
EM Method: Single-particle
Fitted PDBs: 7tc9
Q-score: 0.221

Zhou T, Wang L, Misasi J, Pegu A, Zhang Y, Harris DR, Olia AS, Talana CA, Yang ES, Chen M, Choe M, Shi W, Teng IT, Creanga A, Jenkins C, Leung K, Liu T, Stancofski ED, Stephens T, Zhang B, Tsybovsky Y, Graham BS, Mascola JR, Sullivan NJ, Kwong PD

Science (2022) 376 pp. eabn8897-eabn8897 [ DOI: doi:10.1126/science.abn8897 Pubmed: 35324257 ]

EMD-25807
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3D View
Cryo-EM structure of SARS-CoV-2 Omicron spike in complex with antibody A19-46.1
Release date: March 30, 2022
Resolution: 3.85 Å
EM Method: Single-particle
Fitted PDBs: 7tca
Q-score: 0.282

Zhou T, Wang L, Misasi J, Pegu A, Zhang Y, Harris DR, Olia AS, Talana CA, Yang ES, Chen M, Choe M, Shi W, Teng IT, Creanga A, Jenkins C, Leung K, Liu T, Stancofski ED, Stephens T, Zhang B, Tsybovsky Y, Graham BS, Mascola JR, Sullivan NJ, Kwong PD

Science (2022) 376 pp. eabn8897-eabn8897 [ DOI: doi:10.1126/science.abn8897 Pubmed: 35324257 ]

EMD-25808
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3D View
Cryo-EM structure of SARS-CoV-2 Omicron spike in complex with antibodies A19-46.1 and B1-182.1
Release date: March 30, 2022
Resolution: 3.86 Å
EM Method: Single-particle
Fitted PDBs: 7tcc
Q-score: 0.268

Zhou T, Wang L, Misasi J, Pegu A, Zhang Y, Harris DR, Olia AS, Talana CA, Yang ES, Chen M, Choe M, Shi W, Teng IT, Creanga A, Jenkins C, Leung K, Liu T, Stancofski ED, Stephens T, Zhang B, Tsybovsky Y, Graham BS, Mascola JR, Sullivan NJ, Kwong PD

Science (2022) 376 pp. eabn8897-eabn8897 [ DOI: doi:10.1126/science.abn8897 Pubmed: 35324257 ]

EMD-25792
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Cryo-EM structure of the spike of SARS-CoV-2 Omicron variant of concern
Release date: Jan. 12, 2022
Resolution: 3.29 Å
EM Method: Single-particle
Fitted PDBs: 7tb4
Q-score: 0.406

Wang L, Zhou T, Zhang Y, Yang ES, Schramm CA, Shi W, Pegu A, Oloninyi OK, Ransier A, Darko S, Narpala SR, Hatcher C, Martinez DR, Tsybovsky Y, Phung E, Abiona OM, Cale EM, Chang LA, Corbett KS, DiPiazza AT, Gordon IJ, Leung K, Liu T, Mason RD, Nazzari A, Novik L, Olia AS, Doria-Rose NA, Stephens T, Stringham CD, Talana CA, Teng IT, Wagner D, Widge AT, Zhang B, Roederer M, Ledgerwood JE, Ruckwardt TJ, Gaudinski MR, Baric RS, Graham BS, McDermott AB, Douek DC, Kwong PD, Mascola JR, Sullivan NJ, Misasi J

bioRxiv (2021) [ DOI: doi:10.1101/2021.02.25.432969 Pubmed: 33655252 ]

EMD-23914
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Cryo-EM structure of SARS-CoV-2 spike in complex with neutralizing antibody B1-182.1 that targets the receptor-binding domain
Release date: July 28, 2021
Resolution: 3.71 Å
EM Method: Single-particle
Fitted PDBs: 7mlz
Q-score: 0.348

Wang L, Zhou T, Zhang Y, Yang ES, Schramm CA, Shi W, Pegu A, Oloniniyi OK, Henry AR, Darko S, Narpala SR, Hatcher C, Martinez DR, Tsybovsky Y, Phung E, Abiona OM, Antia A, Cale EM, Chang LA, Choe M, Corbett KS, Davis RL, DiPiazza AT, Gordon IJ, Hait SH, Hermanus T, Kgagudi P, Laboune F, Leung K, Liu T, Mason RD, Nazzari AF, Novik L, O'Connell S, O'Dell S, Olia AS, Schmidt SD, Stephens T, Stringham CD, Talana CA, Teng IT, Wagner DA, Widge AT, Zhang B, Roederer M, Ledgerwood JE, Ruckwardt TJ, Gaudinski MR, Moore PL, Doria-Rose NA, Baric RS, Graham BS, McDermott AB, Douek DC, Kwong PD, Mascola JR, Sullivan NJ, Misasi J

Science (2021) 373 [ Pubmed: 34210892 DOI: doi:10.1126/science.abh1766 ]

Sort by: Download
Showing 1 - 10 of 11. Page 1 of 2
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [11]

Current status

  • REL [11]

Sample type

  • Complex [11]
  • Protein [11]
  • Ligand [6]

Organism

  • Severe acute respiratory syndrome coronavirus [8]
  • Homo sapiens [7]
  • Salmonella enterica [2]
  • Human immunodeficiency virus 1 [1]
  • Sus scrofa [1]

EM Method

  • Single-particle [11]

Resolution

  • ≥ 2Å and < 3Å [1]
  • ≥ 3Å and < 4Å [8]
  • ≥ 4Å and < 5Å [1]
  • ≥ 5Å and < 6Å [1]

Model molecular weight

  • 50-100 kDa [3]
  • 100-250 kDa [2]
  • 250-500 kDa [2]
  • 500-1000 kDa [3]
  • 2-5 MDa [1]

Release Date

  • 2024 [2]
  • 2023 [1]
  • 2022 [6]
  • 2021 [2]

Author by name

  • Graham BS [8]
  • Kwong PD [8]
  • Leung K [8]
  • Liu T [8]
  • Mascola JR [8]
  • Misasi J [8]
  • Olia AS [8]
  • Pegu A [8]
  • Shi W [8]
  • Stephens T [8]
  • Sullivan NJ [8]
  • Talana CA [8]
  • Teng IT [8]
  • Tsybovsky Y [8]
  • Wang L [8]
  • Yang ES [8]
  • Zhang B [8]
  • Zhang Y [8]
  • Zhou T [8]
  • Choe M [7]
  • Chen M [5]
  • Creanga A [5]
  • Harris DR [5]
  • Jenkins C [5]
  • Stancofski ED [5]
  • Tsybovsky T [5]
  • Abiona OM [3]
  • Baric RS [3]
  • Cale EM [3]
  • Chang LA [3]
  • Corbett KS [3]
  • Darko S [3]
  • Dipiazza AT [3]
  • Doria-rose NA [3]
  • Douek DC [3]
  • Gaudinski MR [3]
  • Gordon IJ [3]
  • Hatcher C [3]
  • Ledgerwood JE [3]
  • Martinez DR [3]
  • Mason RD [3]
  • Mcdermott AB [3]
  • Narpala SR [3]
  • Novik L [3]
  • Phung E [3]
  • Roederer M [3]
  • Ruckwardt TJ [3]
  • Schramm CA [3]
  • Stringham CD [3]
  • Widge AT [3]
  • Antia A [2]
  • Caesar JJE [2]
  • Chevance FFV [2]
  • Davis RL [2]
  • Deme JC [2]
  • Furlong EJ [2]
  • Hait SH [2]
  • Henry AR [2]
  • Hermanus T [2]
  • Hughes KT [2]
  • Johnson S [2]
  • Kgagudi P [2]
  • Laboune F [2]
  • Lea SM [2]
  • Moore PL [2]
  • Nazzari AF [2]
  • O Connell S [2]
  • O Dell S [2]
  • Oloniniyi OK [2]
  • Schmidt SD [2]
  • Wagner DA [2]
  • Eren E [1]
  • Nazzari A [1]
  • Oloninyi OK [1]
  • Palmer I [1]
  • Randazzo D [1]
  • Ransier A [1]
  • Sackett DL [1]
  • Wagner D [1]
  • Watts NR [1]
  • Wingfield PT [1]

Author by ORCID

  • Misasi J [7]
  • Graham BS [7]
  • Zhang B [7]
  • Talana CA [7]
  • Zhou T [7]
  • Zhang Y [7]
  • Wang L [7]
  • Leung K [7]
  • Olia AS [7]
  • Yang ES [7]
  • Pegu A [7]
  • Mascola JR [5]
  • Tsybovsky Y [5]
  • Kwong PD [5]
  • Creanga A [5]
  • Jenkins C [5]
  • Harris DR [5]
  • Teng IT [5]
  • Sullivan NJ [5]
  • Liu T [5]
  • Chen M [5]
  • Shi W [5]
  • Choe M [5]
  • Hughes KT [2]
  • Wagner DA [2]
  • Gordon IJ [2]
  • Baric RS [2]
  • Mason RD [2]
  • Novik L [2]
  • Roederer M [2]
  • Widge AT [2]
  • Hait SH [2]
  • Moore PL [2]
  • Deme JC [2]
  • Lea SM [2]
  • Phung E [2]
  • Ruckwardt TJ [2]
  • Oloniniyi OK [2]
  • Narpala SR [2]
  • Sullivan NJ [2]
  • Corbett KS [2]
  • Abiona OM [2]
  • Martinez DR [2]
  • Chang LA [2]
  • Gaudinski MR [2]
  • Mascola JR [2]
  • Doria-rose NA [2]
  • Schmidt SD [2]
  • Johnson S [2]
  • Furlong EJ [2]
  • Cale EM [2]
  • Darko S [2]
  • Choe M [2]
  • Stringham CD [2]
  • Mcdermott AB [2]
  • Nazzari AF [2]
  • Dipiazza AT [2]
  • Kwong PD [2]
  • Eren E [1]

Journal

  • SCIENCE [7]
  • NAT MICROBIOL [2]
  • BIORXIV [1]
  • STRUCTURE [1]

Software

  • CRYOSPARC [7]
  • CISTEM [1]

Microscope

  • FEI TITAN KRIOS [11]

Electron Source

  • FIELD EMISSION GUN [11]

Film or detector model

  • OTHER [8]
  • GATAN K3 BIOQUANTUM 6K X 4K [2]
  • GATAN K2 BASE 4K X 4K [1]

External links

  • PDB [11]
  • UniProt [11]
  • AlphaFold DB [10]
  • InterPro [10]
  • PDBe-Kb [10]
  • Pfam [10]
  • Gene Ontology [7]
  • ChEBI [6]
  • ChEMBL [6]
  • Complex Portal [4]