Filter By
Current Database
- EMDB [10751]
- EMPIAR [163]
Current status
- REL [10914]
Sample type
- Complex [9879]
- Protein [8678]
- Ligand [5510]
- DNA [3683]
- RNA [2945]
- Virus [380]
- Sample [307]
- Cellular component [202]
- Cell [97]
- Other [72]
- Tissue [22]
- Em label [1]
Organism
- Homo sapiens [4028]
- Synthetic construct [2413]
- Escherichia coli [1013]
- Saccharomyces cerevisiae [738]
- Xenopus laevis [676]
- Escherichia coli [442]
- Saccharomyces cerevisiae [417]
- Mus musculus [329]
- Sus scrofa [155]
- Enterobacteria phage m13 [153]
- Oryctolagus cuniculus [120]
- Severe acute respiratory syndrome coronavirus [112]
- Drosophila melanogaster [106]
- Bos taurus [97]
- Arabidopsis thaliana [92]
- Streptococcus pyogenes [91]
- Escherichia virus t7 [88]
- Mycobacterium tuberculosis [77]
- Dna molecule [71]
- Human immunodeficiency virus 1 [66]
- Enterobacteria phage t4 [49]
- Monkeypox virus [48]
- Thermus thermophilus [48]
- Pseudomonas aeruginosa [45]
- African swine fever virus [44]
- Chaetomium thermophilum [44]
- Human herpesvirus 1 [40]
- Mycobacterium tuberculosis [39]
- Simian virus 40 [38]
- Saccharomyces cerevisiae [37]
- Escherichia phage lambda [36]
- Komagataella phaffii [36]
- Schizosaccharomyces pombe [35]
- Staphylococcus aureus [34]
- Bacillus subtilis [34]
- Vibrio cholerae [34]
- Saccharolobus solfataricus [33]
- Chaetomium thermophilum [32]
- Unidentified adenovirus [31]
- Escherichia coli [31]
- Klebsiella pneumoniae [30]
- Mycoplasma pneumoniae [29]
- Escherichia coli [29]
- Rattus norvegicus [28]
- Streptococcus thermophilus [28]
- Pseudomonas aeruginosa [28]
- Mycolicibacterium smegmatis [27]
- Bacillus subtilis [26]
- Human herpesvirus 1 [25]
- Paramecium bursaria chlorella virus 1 [25]
- Scytonema hofmannii [25]
- Influenza a virus [25]
- Gallus gallus [25]
- Streptococcus thermophilus [24]
- Streptococcus pyogenes [24]
- Tetrahymena thermophila [24]
- Amanita phalloides [24]
- (no species) [24]
- Enterobacteria phage t4 [23]
- Saccharomyces cerevisiae [23]
- Escherichia coli [23]
- Pyrococcus furiosus [22]
- Maribacter polysiphoniae [22]
- Komagataella phaffii [22]
- Sus scrofa [22]
- Human cytomegalovirus [21]
- Spodoptera frugiperda [21]
- Influenza a virus [20]
- Tetrahymena thermophila [20]
- Apis mellifera [20]
- (no species) [19]
- Geobacillus stearothermophilus [19]
- Meiothermus taiwanensis [19]
- Thermoflavifilum thermophilum [18]
- Acetivibrio thermocellus [18]
- Influenza b virus [18]
- Peltigera membranacea [18]
- Acinetobacter baumannii [18]
- Lama glama [18]
- Camelidae mixed library [17]
- Streptomyces coelicolor [16]
- Vaccinia virus [16]
- Human cytomegalovirus [16]
- Bacillus phage phi29 [16]
- Adeno-associated dependoparvovirus a [16]
- Escherichia phage mu [16]
- Pseudoalteromonas sp. s983 [16]
- Danio rerio [16]
- Escherichia phage lambda [15]
- Human immunodeficiency virus 1 [15]
- Mycolicibacterium smegmatis [15]
- Chlamydomonas reinhardtii [15]
- Vibrio cholerae [15]
- Trichoplusia ni [15]
- Influenza b virus [14]
- Selenomonas sp. [14]
- Synechococcus elongatus [14]
- Bombyx mori [14]
- Simian virus 40 [13]
- Streptomyces phage phic31 [13]
EM Method
- Single-particle [9689]
- Tomography [763]
- Helical reconstruction [190]
- Subtomogram averaging [106]
- Electron Crystallography [3]
Resolution
- < 2Å [56]
- ≥ 2Å and < 3Å [2318]
- ≥ 3Å and < 4Å [4949]
- ≥ 4Å and < 5Å [1217]
- ≥ 5Å and < 6Å [236]
- ≥ 6Å and < 8Å [458]
- ≥ 8Å and < 12Å [284]
- ≥ 12Å and < 16Å [111]
- ≥ 16Å and < 20Å [115]
- ≥ 20Å and < 30Å [179]
- ≥ 30Å [548]
Model molecular weight
- 0-50 kDa [20]
- 50-100 kDa [212]
- 100-250 kDa [1985]
- 250-500 kDa [2243]
- 500-1000 kDa [1438]
- 1-2 MDa [893]
- 2-5 MDa [1086]
- 5-10 MDa [59]
- > 10 MDa [68]
Release Date
- 2026 [1141]
- 2025 [2493]
- 2024 [1717]
- 2023 [1597]
- 2022 [1036]
- 2021 [806]
- 2020 [689]
- 2019 [419]
- 2018 [430]
- 2017 [194]
- 2016 [145]
- 2015 [53]
- 2014 [30]
- 2013 [59]
- 2012 [21]
- 2011 [16]
- 2010 [12]
- 2009 [14]
- 2008 [10]
- 2007 [9]
- 2006 [16]
- 2005 [1]
- 2004 [1]
- 2003 [5]
Author by name
- Liu J [797]
- Ren G [715]
- Zhang M [636]
- Wang S [451]
- Wu H [409]
- Hu Z [358]
- Gang O [343]
- Zhang Y [320]
- Cramer P [272]
- Zhang X [269]
- Li H [241]
- Bustamante C [236]
- Wang X [231]
- Tao J [225]
- Diaz-celis C [224]
- Ashby PD [223]
- Celis CD [223]
- Liu JF [223]
- Liu Y [208]
- Li S [205]
- Li Z [202]
- Wang Y [202]
- Li J [196]
- Wang C [193]
- Wang H [192]
- Wang J [186]
- Li Y [185]
- Chen X [184]
- Zhang Z [177]
- Darst SA [162]
- Li X [160]
- Beckmann R [155]
- Wang Q [155]
- Dienemann C [152]
- Zhang J [150]
- Chen Y [148]
- Zhang H [148]
- Zhou L [148]
- Yang W [142]
- Zhang K [142]
- Chen Z [137]
- Huang C [135]
- Lei D [135]
- Chen J [134]
- Su H [134]
- Zhang S [133]
- Cheng J [132]
- Castro C [131]
- Castro CE [131]
- Huang CM [131]
- Kurumizaka H [131]
- Marras A [131]
- Marras AE [131]
- Su HJ [131]
- Nogales E [124]
- Wang L [124]
- Xu C [123]
- Zhou ZH [122]
- He Y [121]
- Shi Y [120]
- Berninghausen O [117]
- Urlaub H [117]
- Xu Y [117]
- Gao Y [116]
- Liu L [116]
- Campbell EA [115]
- Yang Y [112]
- Yu Z [110]
- Wu Z [108]
- Zhang L [108]
- Zhao X [108]
- Dietz H [103]
- Korostelev AA [99]
- Li W [98]
- Liu B [97]
- Feng Y [96]
- Wang M [93]
- Hopfner KP [92]
- Li Q [92]
- Takizawa Y [92]
- Zhang P [92]
- Wang F [91]
- Li M [90]
- Liu Z [90]
- Chen K [89]
- Wang Z [89]
- Liu X [87]
- Lu Y [87]
- Xu J [86]
- Chen S [85]
- Wang D [85]
- Zhu C [85]
- Cusack S [83]
- Demo G [82]
- Gellert M [82]
- Loveland AB [81]
- Xiong Y [81]
- Taylor DW [80]
- Yang J [80]
- Wang B [79]
Author by ORCID
- Liu J [701]
- Ren G [701]
- Zhang M [223]
- Tao J [223]
- Bustamante C [223]
- Ashby PD [223]
- Yang W [132]
- Zhou L [131]
- Castro CE [131]
- Marras AE [131]
- Su HJ [131]
- Lei D [131]
- Li H [116]
- Cramer P [115]
- Beckmann R [109]
- Kurumizaka H [100]
- Darst SA [99]
- Korostelev AA [91]
- Dietz H [90]
- Demo G [82]
- Zhou ZH [82]
- Hopfner KP [81]
- Cheng J [81]
- Xu Y [75]
- Taylor DW [75]
- Campbell EA [73]
- Muller CW [73]
- Mao Y [72]
- Yeeles JTP [71]
- Cusack S [70]
- Halic M [69]
- Gao N [69]
- Gellert M [67]
- Urlaub H [67]
- Sekine SI [65]
- Greber BJ [65]
- Zhang X [63]
- Dienemann C [63]
- Ehara H [63]
- Weixlbaumer A [61]
- O'donnell ME [60]
- Nogales E [60]
- Ye F [60]
- Ebright RH [59]
- Xiong Y [57]
- Kaelber JT [56]
- Arragain B [56]
- Berninghausen O [56]
- Li J [56]
- Nikolay R [56]
- Chen Z [55]
- Molodtsov V [55]
- Landick R [54]
- Rappsilber J [53]
- Chen J [53]
- Carrique L [52]
- Kouba T [52]
- Jones ML [52]
- Feng Y [52]
- Gil-carton D [52]
- Dong Y [51]
- Shirouzu M [51]
- Zhang K [51]
- Wilson DN [51]
- Hirst J [50]
- Hamdan SM [49]
- Loveland AB [49]
- Chen X [49]
- Zhang S [49]
- Li S [49]
- Vanden Broeck A [49]
- Lander GC [49]
- Liu L [48]
- Wang S [48]
- Stark JM [48]
- Spahn CMT [48]
- Zhang Y [48]
- Nureki O [48]
- Cui Y [47]
- Klinge S [46]
- Baris Y [46]
- Willner EM [46]
- Itoh Y [45]
- Li N [45]
- Buck M [45]
- Lauer SM [45]
- Cheng Y [44]
- Chai P [44]
- Sia Y [44]
- He Y [44]
- Eustermann S [44]
- Takizawa Y [44]
- Zhang K [43]
- Nguyen THD [43]
- Yin Z [43]
- Chiu W [43]
- Zou S [42]
- Tehseen M [42]
- Wu Z [42]
- Hilal T [42]
Journal
- NAT COMMUN [2347]
- TO BE PUBLISHED [1169]
- NATURE [1126]
- NAT STRUCT MOL BIOL [773]
- MOL CELL [761]
- SCIENCE [700]
- BIORXIV [545]
- NUCLEIC ACIDS RES [504]
- PNAS [471]
- CELL [352]
- SCI ADV [317]
- ELIFE [257]
- EMBO J [166]
- CELL RES [141]
- STRUCTURE [134]
- CELL REP [118]
- J MOL BIOL [103]
- NAT CHEM BIOL [99]
- J BIOL CHEM [92]
- ACTA CRYSTALLOGR D STRUCT BIOL [76]
- CELL DISCOV [60]
- COMMUN BIOL [50]
- J VIROL [49]
- PLOS BIOL [38]
- NAT MICROBIOL [33]
- EMBO REP [31]
- INT J MOL SCI [29]
- PROTEIN CELL [29]
- GENES DEV [27]
- ISCIENCE [27]
- MBIO [27]
- SCI REP [26]
- PLOS PATHOG [25]
- RES SQ [25]
- J MED CHEM [24]
- ACS NANO [21]
- COMMUN CHEM [21]
- NAT PLANTS [21]
- NAT MATER [20]
- PROTEIN SCI [20]
- J AM CHEM SOC [18]
- J CELL BIOL [16]
- J STRUCT BIOL [16]
- RNA [15]
- PLOS ONE [13]
- ADV SCI [11]
- BIOCHEM J [11]
- FEBS J [11]
- NAT CATAL [11]
- PNAS NEXUS [11]
- CELL REP PHYS SCI [10]
- NAT NANOTECHNOL [10]
- SCI BULL (BEIJING) [10]
- VIRUSES [10]
- ANGEW CHEM INT ED ENGL [9]
- GENES CELLS [9]
- GENET MED [9]
- NANO LETTERS [9]
- BIOCHEM BIOPHYS RES COMMUN [7]
- LIFE SCI ALLIANCE [7]
- NAT BIOTECHNOL [7]
- PLANT CELL [7]
- PLANT COMMUN. [7]
- PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES USA [7]
- VIROLOGY [7]
- ANTIOXID REDOX SIGNAL [6]
- HEMASPHERE [6]
- J.BIOCHEM. [6]
- NAT CHEM [6]
- NAT METHODS [6]
- STRUCTURE (LONDON, ENGLAND : 1993) [6]
- ACS INFECT DIS. [5]
- CANCER DISCOV [5]
- FRONT PLANT SCI [5]
- J BACTERIOL [5]
- NANOSCALE [5]
- ACS CATAL [4]
- ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [4]
- BIOCHEMISTRY [4]
- CELL DEATH DIFFER. [4]
- INNOVATION (NY) [4]
- INT J BIOL MACROMOL [4]
- IUCRJ [4]
- J MOL CELL BIOL [4]
- MICROORGANISMS [4]
- MOL PLANT [4]
- NAT CELL BIOL [4]
- NPJ DRUG DISCOV [4]
- PROTEINS [4]
- ACS CENT SCI [3]
- ACS MED.CHEM.LETT. [3]
- BIOCHIM BIOPHYS ACTA [3]
- CHEM [3]
- CURR BIOL [3]
- DNA REPAIR (AMST) [3]
- EXP.MOL.MED. [3]
- JOURNAL OF MOLECULAR CELL BIOLOGY [3]
- MOLECULES [3]
- NATURE CATALYSIS [3]
- ACS CHEM BIOL [2]
Software
- CRYOSPARC [2939]
- RELION [2692]
- GCTF [571]
- CTFFIND [398]
- TOMOCTF [363]
- IPET [344]
- SPIDER [276]
- CISTEM [108]
- WARP [94]
- FREALIGN [93]
- COOT [66]
- PHENIX [60]
- UCSF CHIMERAX [58]
- UCSF CHIMERA [56]
- EMAN2 [45]
- CHIMERA [36]
- EMAN [36]
- JSPR [32]
- CRYOLO [18]
- EMAN2, SPARX [18]
- IMOD [18]
- PYTOM [18]
- IMAGIC [17]
- IPET, FETR, SPIDER, IMOD, EMAN, AND, EMAN2 [14]
- XMIPP [12]
- ISOLDE [11]
- AUTO3DEM [10]
- TOMO3D [9]
- EMREADY [8]
- JSPR, EMAN2, EMAN [8]
- PRIISM/IVE [8]
- CTFFIND3 [7]
- SPHIRE [7]
- EMAN2, RELION [6]
- IMAGIC, SPIDER [6]
- CTFFIND4 [5]
- DYNAMO [5]
- EMAN, IMAGIC [5]
- EMAN, XMIPP [5]
- IMIRS [5]
- MPSA, EMAN, EMAN2 [5]
- SITUS [5]
- SPARX [5]
- SPIDER, EMAN [5]
- CCP4 PACKAGE [4]
- IMOD, DYNAMO [4]
- IMOD, ETOMO, , PEET , SPIDER [4]
- IMOD, RAPTOR, PROTOMO [4]
- JSPR, EMAN, EMAN2 [4]
- MRC [4]
- SPARX, EMAN2, FREALIGN [4]
- TOM TOOLBOX [4]
- CHIMERA, SITUS [3]
- CTFFIND4, RELION, BSOFT [3]
- EMFIT [3]
- EPU [3]
- FREALIGN, IMAGIC [3]
- IMAGIC, CTFIT, CTFFIND3 [3]
- PEET [3]
- REFMAC [3]
- RELION, 1.2 [3]
- RELION, CTFFIND3, EMAN2 [3]
- SIMPLE [3]
- SPIDER, BSOFT, EMAN [3]
- XMIPP, SPIDER, EMAN [3]
- CHIMERA, VEDA UROX , MODELLER FLEX-EM [2]
- E2HELIXBOXER [2]
- EMAN, FREALIGN [2]
- EMAN, SPIDER [2]
- EMAN1.9, EMAN2, XMIPP, BSOFT [2]
- IMAGIC, SPIDER, EMAN [2]
- IMAGIC-5, TIGRIS [2]
- IMOD, PROTOMO, I3, EMAN [2]
- MOTIONCORR2 [2]
- NAMD [2]
- RELION1.3 [2]
- RELION1.4 [2]
- SAVR [2]
- SPIDER, RELION [2]
- XMIPP, EMAN, SPIDER [2]
- XMIPP, SPIDER [2]
- XSCALE [2]
- ADPEM [1]
- ARETOMO [1]
- AUTO [1]
- AV3 [1]
- BSOFT, EMAN, XMIPP, SPIDER, IHRSR [1]
- BSOFT, SPIDER, IHRSR [1]
- CFTFIND [1]
- CHIMERA, COOT [1]
- CHIMERA, MDFF [1]
- CHIMERA, MODELLER, YUP.SCX [1]
- CHIMERA, VEDA [1]
- CHIMERA, YUP.SCX [1]
- CNS 1.3 [1]
- CRYOSP [1]
- CRYOSPAR [1]
- CTFFIND3, RELION [1]
- CTFFIND3, RELION, BSOFT [1]
- DIREX [1]
Microscope
- FEI TITAN KRIOS [6137]
- TFS KRIOS [2702]
- FEI TALOS ARCTICA [495]
- TFS GLACIOS [310]
- ZEISS LIBRA120PLUS [202]
- FEI POLARA 300 [127]
- FEI TECNAI F20 [116]
- FEI TECNAI ARCTICA [97]
- FEI TECNAI F30 [92]
- FEI TITAN [76]
- JEOL CRYO ARM 300 [74]
- TFS TALOS [54]
- FEI TECNAI 12 [32]
- JEOL 2200FS [25]
- FEI/PHILIPS CM200FEG [23]
- FEI TECNAI 20 [22]
- TFS TITAN THEMIS [18]
- JEOL 3200FS [16]
- JEOL 2010F [14]
- FEI TECNAI SPIRIT [11]
- TFS TALOS F200C [11]
- FEI/PHILIPS CM300FEG/T [10]
- JEOL 2100 [10]
- JEOL CRYO ARM 200 [10]
- FEI MORGAGNI [9]
- JEOL 1200EXII [8]
- JEOL 1230 [7]
- JEOL 2100F [7]
- JEOL 2200FSC [7]
- FEI/PHILIPS CM200FEG/ST [5]
- JEOL 3200FSC [5]
- JEOL 1200EX [4]
- JEOL 2010 [3]
- FEI TECNAI 10 [2]
- FEI TECNAI SPHERA [2]
- FEI/PHILIPS CM120T [2]
- FEI/PHILIPS CM200T [2]
- FEI/PHILIPS EM420 [2]
- JEOL 1010 [2]
- JEOL 1400 [2]
- JEOL 1400/HR YPS FEG [2]
- FEI/PHILIPS CM300FEG/HE [1]
- JEOL 2000EX [1]
- JEOL 3000SFF [1]
- TFS TUNDRA [1]
Electron Source
- FIELD EMISSION GUN [10407]
- LAB6 [278]
- OTHER [35]
- TUNGSTEN HAIRPIN [31]
Film or detector model
- GATAN K3 6K X 4K [3011]
- GATAN K3 BIOQUANTUM 6K X 4K [2437]
- GATAN K2 SUMMIT 4K X 4K [2176]
- FEI FALCON IV 4K X 4K [774]
- FEI FALCON III 4K X 4K [674]
- GATAN K2 QUANTUM 4K X 4K [532]
- GATAN ULTRASCAN 4000 4K X 4K [295]
- TFS FALCON 4I 4K X 4K [239]
- FEI FALCON II 4K X 4K [234]
- KODAK SO-163 FILM [95]
- GATAN K3 BIOCONTINUUM 6K X 4K [76]
- OTHER [29]
- GATAN K2 BASE 4K X 4K [23]
- TVIPS TEMCAM-F416 4K X 4K [18]
- FEI CETA 4K X 4K [17]
- FEI EAGLE 4K X 4K [17]
- GATAN K2 4K X 4K [14]
- DIRECT ELECTRON DE-20 5K X 3K [12]
- GATAN ULTRASCAN 1000 2K X 2K [9]
- TVIPS TEMCAM-F415 4K X 4K [9]
- DIRECT ELECTRON DE-64 8K X 8K [8]
- FEI FALCON I 4K X 4K [8]
- GATAN K2 IS 4K X 4K [8]
- DIRECT ELECTRON DE-16 4K X 4K [7]
- GENERIC GATAN [7]
- GENERIC TVIPS 4K X 4K [6]
- FEI EAGLE 2K X 2K [5]
- KODAK 4489 FILM [5]
- GENERIC TVIPS [4]
- DIRECT ELECTRON DE-10 5K X 4K [3]
- GENERIC GATAN 4K X 4K [3]
- DECTRIS SINGLA 1K X 1K [2]
- GATAN ULTRASCAN 10000 10K X 10K [2]
- AGFA SCIENTA FILM [1]
- DECTRIS ARINA 0.2K X 0.2K [1]
- DIRECT ELECTRON DE-12 4K X 3K [1]
- GATAN ORIUS SC600 2.7K X 2.7K [1]
- GENERIC TVIPS 2K X 2K [1]
- TVIPS TEMCAM-F816 8K X 8K [1]
EMPIAR Experiment type
- EMDB [161]
- IHM [2]
EMPIAR Image category
- MICROGRAPHS - MULTIFRAME [151]
- MICROGRAPHS - SINGLE FRAME [28]
- PICKED PARTICLES - SINGLE FRAME - PROCESSED [20]
- PICKED PARTICLES - SINGLE FRAME - UNPROCESSED [6]
- TILT SERIES [3]
- PICKED PARTICLES - MULTIFRAME - PROCESSED [2]
External links
- PDB [10689]
- UniProt [8198]
- PDBe-Kb [7854]
- AlphaFold DB [7503]
- Gene Ontology [7148]
- InterPro [7038]
- Pfam [6563]
- ChEBI [5288]
- DrugBank [5154]
- ChEMBL [4904]
- Complex Portal [3276]
- EMPIAR [1003]
- SCOP2 [198]
- EMDB [161]
- CATH [128]
Resolution: 3.44 Å
EM Method: Single-particle
Fitted PDBs: 9say
Q-score: 0.467
Yi G, Li Q, Holmberg H, Li S, Clare DK, Wang D, Zhang P
bioRxiv (2026) [ Pubmed: 42282700 DOI: doi:10.64898/2026.06.04.730248 ]
Resolution: 2.98 Å
EM Method: Single-particle
Fitted PDBs: 9sb1
Q-score: 0.465
Yi G, Li Q, Holmberg H, Li S, Clare DK, Wang D, Zhang P
bioRxiv (2026) [ Pubmed: 42282700 DOI: doi:10.64898/2026.06.04.730248 ]
Resolution: 3.05 Å
EM Method: Single-particle
Fitted PDBs: 9sb3
Q-score: 0.486
Yi G, Li Q, Holmberg H, Li S, Clare DK, Wang D, Zhang P
bioRxiv (2026) [ Pubmed: 42282700 DOI: doi:10.64898/2026.06.04.730248 ]
Resolution: 3.25 Å
EM Method: Single-particle
Fitted PDBs: 9smr
Q-score: 0.348
Murachelli AG, El Oualid F, Sixma TK
bioRxiv (2026) [ DOI: doi:10.64898/2026.06.05.730370 ]
Resolution: 3.11 Å
EM Method: Single-particle
Fitted PDBs: 23or
Q-score: 0.477
Ji CG, Li Z, Wei XY, Li Y, Zhang JT, Liu X, Jia N
Nat Commun (2026) [ DOI: doi:10.1038/s41467-026-74106-9 Pubmed: 42270618 ]
Resolution: 3.24 Å
EM Method: Single-particle
Fitted PDBs: 9oke
Q-score: 0.402
Yu C, Sankaranarayanan SR, Cornilleau G, Howes AC, Azumaya CM, Day ES, Zilberleyb I, Brillantes B, Cheung TK, Dec L, Loew D, Tran P, Rose CM, Drinnenberg IA, Ciferri C, Yatskevich S
Sci Adv (2026) 12 pp. eaeb5817-eaeb5817 [ Pubmed: 42319948 DOI: doi:10.1126/sciadv.aeb5817 ]
Resolution: 3.23 Å
EM Method: Single-particle
Fitted PDBs: 9okk
Q-score: 0.45
Yu C, Sankaranarayanan SR, Cornilleau G, Howes AC, Azumaya CM, Day ES, Zilberleyb I, Brillantes B, Cheung TK, Dec L, Loew D, Tran P, Rose CM, Drinnenberg IA, Ciferri C, Yatskevich S
Sci Adv (2026) 12 pp. eaeb5817-eaeb5817 [ Pubmed: 42319948 DOI: doi:10.1126/sciadv.aeb5817 ]
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 10dq
Q-score: 0.27
Mengqiu J, Sue B
To Be Published
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 36cr
Q-score: 0.559
King SH, Driscoll CL, Li DB, Guo D, Merchant AT, Brixi G, Wilkinson ME, Hie BL
To Be Published
Resolution: 3.04 Å
EM Method: Single-particle
Fitted PDBs: 9sb0
Q-score: 0.467
Yi G, Li Q, Holmberg H, Li S, Clare DK, Wang D, Zhang P
bioRxiv (2026) [ Pubmed: 42282700 DOI: doi:10.64898/2026.06.04.730248 ]
Filter By
Current Database
- EMDB [10751]
- EMPIAR [163]
Current status
- REL [10914]
Sample type
- Complex [9879]
- Protein [8678]
- Ligand [5510]
- DNA [3683]
- RNA [2945]
- Virus [380]
- Sample [307]
- Cellular component [202]
- Cell [97]
- Other [72]
- Tissue [22]
- Em label [1]
Organism
- Homo sapiens [4028]
- Synthetic construct [2413]
- Escherichia coli [1013]
- Saccharomyces cerevisiae [738]
- Xenopus laevis [676]
- Escherichia coli [442]
- Saccharomyces cerevisiae [417]
- Mus musculus [329]
- Sus scrofa [155]
- Enterobacteria phage m13 [153]
- Oryctolagus cuniculus [120]
- Severe acute respiratory syndrome coronavirus [112]
- Drosophila melanogaster [106]
- Bos taurus [97]
- Arabidopsis thaliana [92]
- Streptococcus pyogenes [91]
- Escherichia virus t7 [88]
- Mycobacterium tuberculosis [77]
- Dna molecule [71]
- Human immunodeficiency virus 1 [66]
- Enterobacteria phage t4 [49]
- Monkeypox virus [48]
- Thermus thermophilus [48]
- Pseudomonas aeruginosa [45]
- African swine fever virus [44]
- Chaetomium thermophilum [44]
- Human herpesvirus 1 [40]
- Mycobacterium tuberculosis [39]
- Simian virus 40 [38]
- Saccharomyces cerevisiae [37]
- Escherichia phage lambda [36]
- Komagataella phaffii [36]
- Schizosaccharomyces pombe [35]
- Staphylococcus aureus [34]
- Bacillus subtilis [34]
- Vibrio cholerae [34]
- Saccharolobus solfataricus [33]
- Chaetomium thermophilum [32]
- Unidentified adenovirus [31]
- Escherichia coli [31]
- Klebsiella pneumoniae [30]
- Mycoplasma pneumoniae [29]
- Escherichia coli [29]
- Rattus norvegicus [28]
- Streptococcus thermophilus [28]
- Pseudomonas aeruginosa [28]
- Mycolicibacterium smegmatis [27]
- Bacillus subtilis [26]
- Human herpesvirus 1 [25]
- Paramecium bursaria chlorella virus 1 [25]
- Scytonema hofmannii [25]
- Influenza a virus [25]
- Gallus gallus [25]
- Streptococcus thermophilus [24]
- Streptococcus pyogenes [24]
- Tetrahymena thermophila [24]
- Amanita phalloides [24]
- (no species) [24]
- Enterobacteria phage t4 [23]
- Saccharomyces cerevisiae [23]
- Escherichia coli [23]
- Pyrococcus furiosus [22]
- Maribacter polysiphoniae [22]
- Komagataella phaffii [22]
- Sus scrofa [22]
- Human cytomegalovirus [21]
- Spodoptera frugiperda [21]
- Influenza a virus [20]
- Tetrahymena thermophila [20]
- Apis mellifera [20]
- (no species) [19]
- Geobacillus stearothermophilus [19]
- Meiothermus taiwanensis [19]
- Thermoflavifilum thermophilum [18]
- Acetivibrio thermocellus [18]
- Influenza b virus [18]
- Peltigera membranacea [18]
- Acinetobacter baumannii [18]
- Lama glama [18]
- Camelidae mixed library [17]
- Streptomyces coelicolor [16]
- Vaccinia virus [16]
- Human cytomegalovirus [16]
- Bacillus phage phi29 [16]
- Adeno-associated dependoparvovirus a [16]
- Escherichia phage mu [16]
- Pseudoalteromonas sp. s983 [16]
- Danio rerio [16]
- Escherichia phage lambda [15]
- Human immunodeficiency virus 1 [15]
- Mycolicibacterium smegmatis [15]
- Chlamydomonas reinhardtii [15]
- Vibrio cholerae [15]
- Trichoplusia ni [15]
- Influenza b virus [14]
- Selenomonas sp. [14]
- Synechococcus elongatus [14]
- Bombyx mori [14]
- Simian virus 40 [13]
- Streptomyces phage phic31 [13]
EM Method
- Single-particle [9689]
- Tomography [763]
- Helical reconstruction [190]
- Subtomogram averaging [106]
- Electron Crystallography [3]
Resolution
- < 2Å [56]
- ≥ 2Å and < 3Å [2318]
- ≥ 3Å and < 4Å [4949]
- ≥ 4Å and < 5Å [1217]
- ≥ 5Å and < 6Å [236]
- ≥ 6Å and < 8Å [458]
- ≥ 8Å and < 12Å [284]
- ≥ 12Å and < 16Å [111]
- ≥ 16Å and < 20Å [115]
- ≥ 20Å and < 30Å [179]
- ≥ 30Å [548]
Model molecular weight
- 0-50 kDa [20]
- 50-100 kDa [212]
- 100-250 kDa [1985]
- 250-500 kDa [2243]
- 500-1000 kDa [1438]
- 1-2 MDa [893]
- 2-5 MDa [1086]
- 5-10 MDa [59]
- > 10 MDa [68]
Release Date
- 2026 [1141]
- 2025 [2493]
- 2024 [1717]
- 2023 [1597]
- 2022 [1036]
- 2021 [806]
- 2020 [689]
- 2019 [419]
- 2018 [430]
- 2017 [194]
- 2016 [145]
- 2015 [53]
- 2014 [30]
- 2013 [59]
- 2012 [21]
- 2011 [16]
- 2010 [12]
- 2009 [14]
- 2008 [10]
- 2007 [9]
- 2006 [16]
- 2005 [1]
- 2004 [1]
- 2003 [5]
Author by name
- Liu J [797]
- Ren G [715]
- Zhang M [636]
- Wang S [451]
- Wu H [409]
- Hu Z [358]
- Gang O [343]
- Zhang Y [320]
- Cramer P [272]
- Zhang X [269]
- Li H [241]
- Bustamante C [236]
- Wang X [231]
- Tao J [225]
- Diaz-celis C [224]
- Ashby PD [223]
- Celis CD [223]
- Liu JF [223]
- Liu Y [208]
- Li S [205]
- Li Z [202]
- Wang Y [202]
- Li J [196]
- Wang C [193]
- Wang H [192]
- Wang J [186]
- Li Y [185]
- Chen X [184]
- Zhang Z [177]
- Darst SA [162]
- Li X [160]
- Beckmann R [155]
- Wang Q [155]
- Dienemann C [152]
- Zhang J [150]
- Chen Y [148]
- Zhang H [148]
- Zhou L [148]
- Yang W [142]
- Zhang K [142]
- Chen Z [137]
- Huang C [135]
- Lei D [135]
- Chen J [134]
- Su H [134]
- Zhang S [133]
- Cheng J [132]
- Castro C [131]
- Castro CE [131]
- Huang CM [131]
- Kurumizaka H [131]
- Marras A [131]
- Marras AE [131]
- Su HJ [131]
- Nogales E [124]
- Wang L [124]
- Xu C [123]
- Zhou ZH [122]
- He Y [121]
- Shi Y [120]
- Berninghausen O [117]
- Urlaub H [117]
- Xu Y [117]
- Gao Y [116]
- Liu L [116]
- Campbell EA [115]
- Yang Y [112]
- Yu Z [110]
- Wu Z [108]
- Zhang L [108]
- Zhao X [108]
- Dietz H [103]
- Korostelev AA [99]
- Li W [98]
- Liu B [97]
- Feng Y [96]
- Wang M [93]
- Hopfner KP [92]
- Li Q [92]
- Takizawa Y [92]
- Zhang P [92]
- Wang F [91]
- Li M [90]
- Liu Z [90]
- Chen K [89]
- Wang Z [89]
- Liu X [87]
- Lu Y [87]
- Xu J [86]
- Chen S [85]
- Wang D [85]
- Zhu C [85]
- Cusack S [83]
- Demo G [82]
- Gellert M [82]
- Loveland AB [81]
- Xiong Y [81]
- Taylor DW [80]
- Yang J [80]
- Wang B [79]
Author by ORCID
- Liu J [701]
- Ren G [701]
- Zhang M [223]
- Tao J [223]
- Bustamante C [223]
- Ashby PD [223]
- Yang W [132]
- Zhou L [131]
- Castro CE [131]
- Marras AE [131]
- Su HJ [131]
- Lei D [131]
- Li H [116]
- Cramer P [115]
- Beckmann R [109]
- Kurumizaka H [100]
- Darst SA [99]
- Korostelev AA [91]
- Dietz H [90]
- Demo G [82]
- Zhou ZH [82]
- Hopfner KP [81]
- Cheng J [81]
- Xu Y [75]
- Taylor DW [75]
- Campbell EA [73]
- Muller CW [73]
- Mao Y [72]
- Yeeles JTP [71]
- Cusack S [70]
- Halic M [69]
- Gao N [69]
- Gellert M [67]
- Urlaub H [67]
- Sekine SI [65]
- Greber BJ [65]
- Zhang X [63]
- Dienemann C [63]
- Ehara H [63]
- Weixlbaumer A [61]
- O'donnell ME [60]
- Nogales E [60]
- Ye F [60]
- Ebright RH [59]
- Xiong Y [57]
- Kaelber JT [56]
- Arragain B [56]
- Berninghausen O [56]
- Li J [56]
- Nikolay R [56]
- Chen Z [55]
- Molodtsov V [55]
- Landick R [54]
- Rappsilber J [53]
- Chen J [53]
- Carrique L [52]
- Kouba T [52]
- Jones ML [52]
- Feng Y [52]
- Gil-carton D [52]
- Dong Y [51]
- Shirouzu M [51]
- Zhang K [51]
- Wilson DN [51]
- Hirst J [50]
- Hamdan SM [49]
- Loveland AB [49]
- Chen X [49]
- Zhang S [49]
- Li S [49]
- Vanden Broeck A [49]
- Lander GC [49]
- Liu L [48]
- Wang S [48]
- Stark JM [48]
- Spahn CMT [48]
- Zhang Y [48]
- Nureki O [48]
- Cui Y [47]
- Klinge S [46]
- Baris Y [46]
- Willner EM [46]
- Itoh Y [45]
- Li N [45]
- Buck M [45]
- Lauer SM [45]
- Cheng Y [44]
- Chai P [44]
- Sia Y [44]
- He Y [44]
- Eustermann S [44]
- Takizawa Y [44]
- Zhang K [43]
- Nguyen THD [43]
- Yin Z [43]
- Chiu W [43]
- Zou S [42]
- Tehseen M [42]
- Wu Z [42]
- Hilal T [42]
Journal
- NAT COMMUN [2347]
- TO BE PUBLISHED [1169]
- NATURE [1126]
- NAT STRUCT MOL BIOL [773]
- MOL CELL [761]
- SCIENCE [700]
- BIORXIV [545]
- NUCLEIC ACIDS RES [504]
- PNAS [471]
- CELL [352]
- SCI ADV [317]
- ELIFE [257]
- EMBO J [166]
- CELL RES [141]
- STRUCTURE [134]
- CELL REP [118]
- J MOL BIOL [103]
- NAT CHEM BIOL [99]
- J BIOL CHEM [92]
- ACTA CRYSTALLOGR D STRUCT BIOL [76]
- CELL DISCOV [60]
- COMMUN BIOL [50]
- J VIROL [49]
- PLOS BIOL [38]
- NAT MICROBIOL [33]
- EMBO REP [31]
- INT J MOL SCI [29]
- PROTEIN CELL [29]
- GENES DEV [27]
- ISCIENCE [27]
- MBIO [27]
- SCI REP [26]
- PLOS PATHOG [25]
- RES SQ [25]
- J MED CHEM [24]
- ACS NANO [21]
- COMMUN CHEM [21]
- NAT PLANTS [21]
- NAT MATER [20]
- PROTEIN SCI [20]
- J AM CHEM SOC [18]
- J CELL BIOL [16]
- J STRUCT BIOL [16]
- RNA [15]
- PLOS ONE [13]
- ADV SCI [11]
- BIOCHEM J [11]
- FEBS J [11]
- NAT CATAL [11]
- PNAS NEXUS [11]
- CELL REP PHYS SCI [10]
- NAT NANOTECHNOL [10]
- SCI BULL (BEIJING) [10]
- VIRUSES [10]
- ANGEW CHEM INT ED ENGL [9]
- GENES CELLS [9]
- GENET MED [9]
- NANO LETTERS [9]
- BIOCHEM BIOPHYS RES COMMUN [7]
- LIFE SCI ALLIANCE [7]
- NAT BIOTECHNOL [7]
- PLANT CELL [7]
- PLANT COMMUN. [7]
- PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES USA [7]
- VIROLOGY [7]
- ANTIOXID REDOX SIGNAL [6]
- HEMASPHERE [6]
- J.BIOCHEM. [6]
- NAT CHEM [6]
- NAT METHODS [6]
- STRUCTURE (LONDON, ENGLAND : 1993) [6]
- ACS INFECT DIS. [5]
- CANCER DISCOV [5]
- FRONT PLANT SCI [5]
- J BACTERIOL [5]
- NANOSCALE [5]
- ACS CATAL [4]
- ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [4]
- BIOCHEMISTRY [4]
- CELL DEATH DIFFER. [4]
- INNOVATION (NY) [4]
- INT J BIOL MACROMOL [4]
- IUCRJ [4]
- J MOL CELL BIOL [4]
- MICROORGANISMS [4]
- MOL PLANT [4]
- NAT CELL BIOL [4]
- NPJ DRUG DISCOV [4]
- PROTEINS [4]
- ACS CENT SCI [3]
- ACS MED.CHEM.LETT. [3]
- BIOCHIM BIOPHYS ACTA [3]
- CHEM [3]
- CURR BIOL [3]
- DNA REPAIR (AMST) [3]
- EXP.MOL.MED. [3]
- JOURNAL OF MOLECULAR CELL BIOLOGY [3]
- MOLECULES [3]
- NATURE CATALYSIS [3]
- ACS CHEM BIOL [2]
Software
- CRYOSPARC [2939]
- RELION [2692]
- GCTF [571]
- CTFFIND [398]
- TOMOCTF [363]
- IPET [344]
- SPIDER [276]
- CISTEM [108]
- WARP [94]
- FREALIGN [93]
- COOT [66]
- PHENIX [60]
- UCSF CHIMERAX [58]
- UCSF CHIMERA [56]
- EMAN2 [45]
- CHIMERA [36]
- EMAN [36]
- JSPR [32]
- CRYOLO [18]
- EMAN2, SPARX [18]
- IMOD [18]
- PYTOM [18]
- IMAGIC [17]
- IPET, FETR, SPIDER, IMOD, EMAN, AND, EMAN2 [14]
- XMIPP [12]
- ISOLDE [11]
- AUTO3DEM [10]
- TOMO3D [9]
- EMREADY [8]
- JSPR, EMAN2, EMAN [8]
- PRIISM/IVE [8]
- CTFFIND3 [7]
- SPHIRE [7]
- EMAN2, RELION [6]
- IMAGIC, SPIDER [6]
- CTFFIND4 [5]
- DYNAMO [5]
- EMAN, IMAGIC [5]
- EMAN, XMIPP [5]
- IMIRS [5]
- MPSA, EMAN, EMAN2 [5]
- SITUS [5]
- SPARX [5]
- SPIDER, EMAN [5]
- CCP4 PACKAGE [4]
- IMOD, DYNAMO [4]
- IMOD, ETOMO, , PEET , SPIDER [4]
- IMOD, RAPTOR, PROTOMO [4]
- JSPR, EMAN, EMAN2 [4]
- MRC [4]
- SPARX, EMAN2, FREALIGN [4]
- TOM TOOLBOX [4]
- CHIMERA, SITUS [3]
- CTFFIND4, RELION, BSOFT [3]
- EMFIT [3]
- EPU [3]
- FREALIGN, IMAGIC [3]
- IMAGIC, CTFIT, CTFFIND3 [3]
- PEET [3]
- REFMAC [3]
- RELION, 1.2 [3]
- RELION, CTFFIND3, EMAN2 [3]
- SIMPLE [3]
- SPIDER, BSOFT, EMAN [3]
- XMIPP, SPIDER, EMAN [3]
- CHIMERA, VEDA UROX , MODELLER FLEX-EM [2]
- E2HELIXBOXER [2]
- EMAN, FREALIGN [2]
- EMAN, SPIDER [2]
- EMAN1.9, EMAN2, XMIPP, BSOFT [2]
- IMAGIC, SPIDER, EMAN [2]
- IMAGIC-5, TIGRIS [2]
- IMOD, PROTOMO, I3, EMAN [2]
- MOTIONCORR2 [2]
- NAMD [2]
- RELION1.3 [2]
- RELION1.4 [2]
- SAVR [2]
- SPIDER, RELION [2]
- XMIPP, EMAN, SPIDER [2]
- XMIPP, SPIDER [2]
- XSCALE [2]
- ADPEM [1]
- ARETOMO [1]
- AUTO [1]
- AV3 [1]
- BSOFT, EMAN, XMIPP, SPIDER, IHRSR [1]
- BSOFT, SPIDER, IHRSR [1]
- CFTFIND [1]
- CHIMERA, COOT [1]
- CHIMERA, MDFF [1]
- CHIMERA, MODELLER, YUP.SCX [1]
- CHIMERA, VEDA [1]
- CHIMERA, YUP.SCX [1]
- CNS 1.3 [1]
- CRYOSP [1]
- CRYOSPAR [1]
- CTFFIND3, RELION [1]
- CTFFIND3, RELION, BSOFT [1]
- DIREX [1]
Microscope
- FEI TITAN KRIOS [6137]
- TFS KRIOS [2702]
- FEI TALOS ARCTICA [495]
- TFS GLACIOS [310]
- ZEISS LIBRA120PLUS [202]
- FEI POLARA 300 [127]
- FEI TECNAI F20 [116]
- FEI TECNAI ARCTICA [97]
- FEI TECNAI F30 [92]
- FEI TITAN [76]
- JEOL CRYO ARM 300 [74]
- TFS TALOS [54]
- FEI TECNAI 12 [32]
- JEOL 2200FS [25]
- FEI/PHILIPS CM200FEG [23]
- FEI TECNAI 20 [22]
- TFS TITAN THEMIS [18]
- JEOL 3200FS [16]
- JEOL 2010F [14]
- FEI TECNAI SPIRIT [11]
- TFS TALOS F200C [11]
- FEI/PHILIPS CM300FEG/T [10]
- JEOL 2100 [10]
- JEOL CRYO ARM 200 [10]
- FEI MORGAGNI [9]
- JEOL 1200EXII [8]
- JEOL 1230 [7]
- JEOL 2100F [7]
- JEOL 2200FSC [7]
- FEI/PHILIPS CM200FEG/ST [5]
- JEOL 3200FSC [5]
- JEOL 1200EX [4]
- JEOL 2010 [3]
- FEI TECNAI 10 [2]
- FEI TECNAI SPHERA [2]
- FEI/PHILIPS CM120T [2]
- FEI/PHILIPS CM200T [2]
- FEI/PHILIPS EM420 [2]
- JEOL 1010 [2]
- JEOL 1400 [2]
- JEOL 1400/HR YPS FEG [2]
- FEI/PHILIPS CM300FEG/HE [1]
- JEOL 2000EX [1]
- JEOL 3000SFF [1]
- TFS TUNDRA [1]
Electron Source
- FIELD EMISSION GUN [10407]
- LAB6 [278]
- OTHER [35]
- TUNGSTEN HAIRPIN [31]
Film or detector model
- GATAN K3 6K X 4K [3011]
- GATAN K3 BIOQUANTUM 6K X 4K [2437]
- GATAN K2 SUMMIT 4K X 4K [2176]
- FEI FALCON IV 4K X 4K [774]
- FEI FALCON III 4K X 4K [674]
- GATAN K2 QUANTUM 4K X 4K [532]
- GATAN ULTRASCAN 4000 4K X 4K [295]
- TFS FALCON 4I 4K X 4K [239]
- FEI FALCON II 4K X 4K [234]
- KODAK SO-163 FILM [95]
- GATAN K3 BIOCONTINUUM 6K X 4K [76]
- OTHER [29]
- GATAN K2 BASE 4K X 4K [23]
- TVIPS TEMCAM-F416 4K X 4K [18]
- FEI CETA 4K X 4K [17]
- FEI EAGLE 4K X 4K [17]
- GATAN K2 4K X 4K [14]
- DIRECT ELECTRON DE-20 5K X 3K [12]
- GATAN ULTRASCAN 1000 2K X 2K [9]
- TVIPS TEMCAM-F415 4K X 4K [9]
- DIRECT ELECTRON DE-64 8K X 8K [8]
- FEI FALCON I 4K X 4K [8]
- GATAN K2 IS 4K X 4K [8]
- DIRECT ELECTRON DE-16 4K X 4K [7]
- GENERIC GATAN [7]
- GENERIC TVIPS 4K X 4K [6]
- FEI EAGLE 2K X 2K [5]
- KODAK 4489 FILM [5]
- GENERIC TVIPS [4]
- DIRECT ELECTRON DE-10 5K X 4K [3]
- GENERIC GATAN 4K X 4K [3]
- DECTRIS SINGLA 1K X 1K [2]
- GATAN ULTRASCAN 10000 10K X 10K [2]
- AGFA SCIENTA FILM [1]
- DECTRIS ARINA 0.2K X 0.2K [1]
- DIRECT ELECTRON DE-12 4K X 3K [1]
- GATAN ORIUS SC600 2.7K X 2.7K [1]
- GENERIC TVIPS 2K X 2K [1]
- TVIPS TEMCAM-F816 8K X 8K [1]
EMPIAR Experiment type
- EMDB [161]
- IHM [2]
EMPIAR Image category
- MICROGRAPHS - MULTIFRAME [151]
- MICROGRAPHS - SINGLE FRAME [28]
- PICKED PARTICLES - SINGLE FRAME - PROCESSED [20]
- PICKED PARTICLES - SINGLE FRAME - UNPROCESSED [6]
- TILT SERIES [3]
- PICKED PARTICLES - MULTIFRAME - PROCESSED [2]
External links
- PDB [10689]
- UniProt [8198]
- PDBe-Kb [7854]
- AlphaFold DB [7503]
- Gene Ontology [7148]
- InterPro [7038]
- Pfam [6563]
- ChEBI [5288]
- DrugBank [5154]
- ChEMBL [4904]
- Complex Portal [3276]
- EMPIAR [1003]
- SCOP2 [198]
- EMDB [161]
- CATH [128]