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DNA
Filter By
Current Database
- EMDB [6990]
- EMPIAR [139]
Current status
- REL [7129]
Sample type
- Complex [6299]
- Protein [5012]
- DNA [3396]
- Ligand [2892]
- RNA [1386]
- Sample [305]
- Virus [288]
- Cellular component [140]
- Cell [59]
- Other [59]
- Tissue [9]
- Em label [1]
Organism
- Synthetic construct [2196]
- Homo sapiens [2158]
- Xenopus laevis [637]
- Escherichia coli [575]
- Saccharomyces cerevisiae [490]
- Escherichia coli [263]
- Saccharomyces cerevisiae [251]
- Enterobacteria phage m13 [153]
- Mus musculus [144]
- Sus scrofa [138]
- Streptococcus pyogenes [81]
- Escherichia virus t7 [75]
- Mycobacterium tuberculosis [71]
- Dna molecule [55]
- Arabidopsis thaliana [54]
- Drosophila melanogaster [50]
- Human immunodeficiency virus 1 [49]
- Monkeypox virus [48]
- African swine fever virus [44]
- Thermus thermophilus [44]
- Human herpesvirus 1 [39]
- Simian virus 40 [37]
- Chaetomium thermophilum [37]
- Pseudomonas aeruginosa [37]
- Enterobacteria phage t4 [35]
- Mycobacterium tuberculosis [33]
- Bacillus subtilis [32]
- Saccharomyces cerevisiae [32]
- Vibrio cholerae [30]
- Escherichia phage lambda [29]
- Mycoplasma pneumoniae [29]
- Komagataella phaffii [29]
- Escherichia coli [28]
- Mycolicibacterium smegmatis [27]
- Bacillus subtilis [26]
- Klebsiella pneumoniae [26]
- Paramecium bursaria chlorella virus 1 [25]
- Streptococcus thermophilus [25]
- Scytonema hofmannii [25]
- Streptococcus thermophilus [24]
- (no species) [24]
- Bos taurus [24]
- Enterobacteria phage t4 [23]
- Maribacter polysiphoniae [22]
- Komagataella phaffii [22]
- Amanita phalloides [22]
- Sus scrofa [22]
- Severe acute respiratory syndrome coronavirus [21]
- Streptococcus pyogenes [20]
- Human herpesvirus 1 [19]
- Human cytomegalovirus [19]
- (no species) [19]
- Unidentified adenovirus [18]
- Thermoflavifilum thermophilum [18]
- Acetivibrio thermocellus [18]
- Peltigera membranacea [18]
- Acinetobacter baumannii [18]
- Tetrahymena thermophila [18]
- Gallus gallus [18]
- Tetrahymena thermophila [17]
- Streptomyces coelicolor [16]
- Staphylococcus aureus [16]
- Pseudomonas aeruginosa [16]
- Escherichia phage mu [16]
- Escherichia phage lambda [15]
- Mycolicibacterium smegmatis [15]
- Saccharolobus solfataricus [15]
- Vibrio cholerae [15]
- Danio rerio [15]
- Vaccinia virus [14]
- Human cytomegalovirus [14]
- Selenomonas sp. [14]
- Chaetomium thermophilum [14]
- Streptomyces phage phic31 [13]
- Photorhabdus thracensis [13]
- Mycobacterium phage bxb1 [13]
- Spodoptera frugiperda [13]
- Escherichia coli [13]
- Simian virus 40 [12]
- Pseudomonas virus prd1 [12]
- Acidaminococcus sp. (strain bv3l6) [12]
- Geobacillus stearothermophilus [12]
- Xenopus borealis [12]
- Salmonella enterica [12]
- Bacillus phage spp1 [11]
- Bacillus phage phi29 [11]
- Adeno-associated dependoparvovirus a [11]
- Synthetic rna [11]
- Thermus thermophilus [11]
- Thermococcus kodakarensis [11]
- Alphabaculovirus aucalifornicae [11]
- Aquifex aeolicus [11]
- Human mastadenovirus c [10]
- Bacillus thuringiensis [10]
- Pyrococcus furiosus [10]
- Saccharolobus solfataricus [10]
- Thermus thermophilus [10]
- Alkalihalobacillus halodurans [10]
- Pyrococcus abyssi [10]
- Schizosaccharomyces pombe [10]
EM Method
- Single-particle [6037]
- Tomography [753]
- Helical reconstruction [128]
- Subtomogram averaging [69]
- Electron Crystallography [3]
Resolution
- < 2Å [20]
- ≥ 2Å and < 3Å [1253]
- ≥ 3Å and < 4Å [2980]
- ≥ 4Å and < 5Å [805]
- ≥ 5Å and < 6Å [165]
- ≥ 6Å and < 8Å [340]
- ≥ 8Å and < 12Å [235]
- ≥ 12Å and < 16Å [98]
- ≥ 16Å and < 20Å [110]
- ≥ 20Å and < 30Å [172]
- ≥ 30Å [542]
Model molecular weight
- 50-100 kDa [12]
- 100-250 kDa [59]
- 250-500 kDa [84]
- 500-1000 kDa [50]
- 1-2 MDa [36]
- 2-5 MDa [35]
- 5-10 MDa [2]
- > 10 MDa [3]
Release Date
- 2026 [297]
- 2025 [1860]
- 2024 [1136]
- 2023 [1145]
- 2022 [699]
- 2021 [487]
- 2020 [419]
- 2019 [299]
- 2018 [309]
- 2017 [126]
- 2016 [107]
- 2015 [53]
- 2014 [28]
- 2013 [59]
- 2012 [21]
- 2011 [16]
- 2010 [12]
- 2009 [14]
- 2008 [10]
- 2007 [9]
- 2006 [16]
- 2005 [1]
- 2004 [1]
- 2003 [5]
Author by name
- Liu J [737]
- Ren G [715]
- Zhang M [610]
- Wang S [413]
- Wu H [393]
- Hu Z [356]
- Gang O [343]
- Cramer P [261]
- Bustamante C [227]
- Tao J [225]
- Diaz-celis C [224]
- Ashby PD [223]
- Celis CD [223]
- Liu JF [223]
- Zhang Y [168]
- Zhang X [164]
- Li H [161]
- Wang C [156]
- Wang H [147]
- Liu Y [144]
- Dienemann C [140]
- Yang W [140]
- Lei D [135]
- Zhou L [134]
- Huang C [133]
- Castro C [131]
- Castro CE [131]
- Huang CM [131]
- Marras A [131]
- Marras AE [131]
- Su H [131]
- Su HJ [131]
- Li J [128]
- Li Z [128]
- Kurumizaka H [127]
- Wang Y [121]
- Chen X [118]
- Darst SA [114]
- Wang X [108]
- Chen Z [106]
- Nogales E [104]
- Dietz H [103]
- Li X [97]
- Chen J [95]
- Liu L [94]
- Zhou ZH [94]
- Chen Y [92]
- Li Y [92]
- Wang Q [90]
- Yang Y [90]
- Takizawa Y [88]
- Xu Y [88]
- Hopfner KP [87]
- Zhang Z [87]
- Campbell EA [84]
- Li W [84]
- Feng Y [83]
- Urlaub H [83]
- Gellert M [82]
- He Y [80]
- Li S [80]
- Zhang J [79]
- Wang L [78]
- Yeeles JTP [77]
- Chen K [76]
- Zhang H [76]
- Muller CW [74]
- Zhang L [74]
- Ebright RH [73]
- Halic M [72]
- Taylor DW [71]
- Yu Z [68]
- Gao Y [66]
- Gao F [65]
- Liu X [65]
- Costa A [64]
- Kujirai T [64]
- Liu B [63]
- Ehara H [61]
- Farnung L [61]
- Li M [61]
- Ren Y [61]
- Sekine SI [61]
- Buck M [60]
- Ye F [60]
- Zhang F [60]
- Wang F [59]
- Zhao X [59]
- Bilokapic S [58]
- Chen W [58]
- Liu H [58]
- Xu J [57]
- Zhang S [57]
- Zhao D [57]
- Takacs M [55]
- Weixlbaumer A [55]
- Zhang K [55]
- Cavadini S [54]
- He Q [54]
- Jones ML [54]
Author by ORCID
- Kurumizaka H [6]
- Li H [6]
- Czarnocki-cieciura M [5]
- Skowronek K [5]
- Ramakrishnan V [5]
- Beckmann R [5]
- Campbell EA [4]
- Takizawa Y [4]
- Shirouzu M [4]
- Wilson DN [4]
- Cheng J [4]
- Nikolay R [4]
- Frank J [3]
- Cramer P [3]
- Becker T [3]
- Li N [3]
- Nowotny M [3]
- Barford D [3]
- Greber BJ [3]
- Brown A [3]
- Chen C [3]
- Mer G [3]
- Spahn CMT [3]
- Burger J [3]
- Fraser JS [3]
- Amunts A [3]
- Demo G [3]
- Arragain B [3]
- Schatz DG [3]
- Taylor DW [3]
- Botuyan MV [3]
- Cushing VI [3]
- Darst SA [3]
- Chen Z [3]
- Muller CW [3]
- Gao N [3]
- Orlova EV [3]
- Lauer SM [3]
- Caffrey B [2]
- Hamdan SM [2]
- Blaza JN [2]
- Kujirai T [2]
- Schneider C [2]
- Bell CE [2]
- Ishiguro K [2]
- Nozawa K [2]
- Koh AF [2]
- Hayashi G [2]
- Ekemezie CL [2]
- Hill CH [2]
- Southworth DR [2]
- Itoh Y [2]
- Bochtler M [2]
- Yin P [2]
- Sekine SI [2]
- Herzog F [2]
- Webster MW [2]
- Takacs M [2]
- Hirst J [2]
- Wright JJ [2]
- O'donnell ME [2]
- Barrientos A [2]
- Doudna JA [2]
- Lu P [2]
- Hardwick SW [2]
- Mielke T [2]
- Wang HW [2]
- Weixlbaumer A [2]
- Tehseen M [2]
- Zajko W [2]
- Hoffmann R [2]
- Chirgadze DY [2]
- Ma J [2]
- Muir KW [2]
- Yokoyama T [2]
- Sun J [2]
- Ilangovan A [2]
- Rybak MY [2]
- Brown CR [2]
- Hoffmann NA [2]
- Li D [2]
- Braxton JR [2]
- Jiang W [2]
- Ali S [2]
- Barbazanges M [2]
- Zhang Y [2]
- Chen X [2]
- Wu X [2]
- Lanphere C [2]
- Tse E [2]
- Chen J [2]
- Pardon E [2]
- Qin B [2]
- Huang Y [2]
- Shi Y [2]
- He J [2]
- Slyvka A [2]
- Roumeliotis TI [2]
- Yang W [2]
- Steyaert J [2]
Journal
- NAT COMMUN [1508]
- TO BE PUBLISHED [937]
- NATURE [758]
- MOL CELL [512]
- NAT STRUCT MOL BIOL [492]
- SCIENCE [434]
- NUCLEIC ACIDS RES [368]
- PNAS [334]
- BIORXIV [253]
- SCI ADV [210]
- CELL [200]
- ELIFE [154]
- STRUCTURE [106]
- EMBO J [99]
- CELL RES [82]
- J MOL BIOL [72]
- NAT CHEM BIOL [56]
- J BIOL CHEM [54]
- CELL REP [53]
- CELL DISCOV [47]
- COMMUN BIOL [34]
- ACTA CRYSTALLOGR D STRUCT BIOL [33]
- J VIROL [32]
- PLOS BIOL [27]
- GENES DEV [24]
- RES SQ [24]
- ACS NANO [21]
- INT J MOL SCI [20]
- MBIO [20]
- NAT MATER [20]
- EMBO REP [17]
- PROTEIN CELL [17]
- COMMUN CHEM [16]
- ISCIENCE [16]
- SCI REP [15]
- NAT MICROBIOL [14]
- NAT PLANTS [14]
- J AM CHEM SOC [12]
- PLOS PATHOG [12]
- NAT CATAL [11]
- FEBS J [10]
- NAT NANOTECHNOL [10]
- PROTEIN SCI [10]
- GENES CELLS [9]
- J MED CHEM [9]
- J STRUCT BIOL [9]
- NANO LETTERS [9]
- PNAS NEXUS [9]
- BIOCHEM J [8]
- CELL REP PHYS SCI [8]
- PLOS ONE [7]
- PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES USA [7]
- VIROLOGY [7]
- J CELL BIOL [6]
- NAT BIOTECHNOL [6]
- STRUCTURE (LONDON, ENGLAND : 1993) [6]
- FRONT PLANT SCI [5]
- NANOSCALE [5]
- PLANT CELL [5]
- ACS CATAL [4]
- ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [4]
- ANGEW CHEM INT ED ENGL [4]
- INT J BIOL MACROMOL [4]
- PLANT COMMUN. [4]
- VIRUSES [4]
- ACS INFECT DIS. [3]
- BIOCHEM BIOPHYS RES COMMUN [3]
- BIOCHEMISTRY [3]
- BIOCHIM BIOPHYS ACTA [3]
- CHEM [3]
- DNA REPAIR (AMST) [3]
- EXP.MOL.MED. [3]
- INNOVATION (NY) [3]
- J MOL CELL BIOL [3]
- LIFE SCI ALLIANCE [3]
- NAT METHODS [3]
- NATURE CATALYSIS [3]
- ACTA NEUROPATHOL [2]
- ADV SCI [2]
- CELL GENOM [2]
- CELL HOST MICROBE [2]
- CURR BIOL [2]
- EXP MOL MED [2]
- IUCRJ [2]
- J BACTERIOL [2]
- J.BIOCHEM. [2]
- MOL BIOL CELL [2]
- MOLECULES [2]
- NAR MOL MED [2]
- NAT CELL BIOL [2]
- NAT CHEM [2]
- OPEN BIOL [2]
- PROCEEDINGS OF THE ACADEMY OF SCIENCES USA [2]
- SCI SIGNAL [2]
- SIGNAL TRANSDUCT TARGET THER [2]
- TRANSCRIPTION [2]
- VIROL J [2]
- ACS APPL MATER INTERFACES [1]
- ACS CHEM BIOL [1]
- ACS MED.CHEM.LETT. [1]
Software
- RELION [1733]
- CRYOSPARC [1680]
- GCTF [468]
- TOMOCTF [363]
- IPET [344]
- SPIDER [252]
- CTFFIND [235]
- WARP [65]
- CISTEM [46]
- CHIMERA [36]
- EMAN [36]
- COOT [35]
- EMAN2 [32]
- JSPR [32]
- IMAGIC [17]
- PHENIX [17]
- EMAN2, SPARX [16]
- FREALIGN [15]
- IMOD [15]
- IPET, FETR, SPIDER, IMOD, EMAN, AND, EMAN2 [14]
- PYTOM [12]
- XMIPP [12]
- AUTO3DEM [10]
- TOMO3D [9]
- UCSF CHIMERAX [9]
- EMREADY [8]
- JSPR, EMAN2, EMAN [8]
- PRIISM/IVE [8]
- CRYOLO [7]
- UCSF CHIMERA [7]
- CTFFIND3 [6]
- EMAN2, RELION [6]
- IMAGIC, SPIDER [6]
- EMAN, IMAGIC [5]
- EMAN, XMIPP [5]
- MPSA, EMAN, EMAN2 [5]
- SITUS [5]
- SPIDER, EMAN [5]
- IMOD, DYNAMO [4]
- IMOD, ETOMO, , PEET , SPIDER [4]
- IMOD, RAPTOR, PROTOMO [4]
- JSPR, EMAN, EMAN2 [4]
- MRC [4]
- SPARX, EMAN2, FREALIGN [4]
- CHIMERA, SITUS [3]
- CTFFIND4 [3]
- CTFFIND4, RELION, BSOFT [3]
- EMFIT [3]
- EPU [3]
- FREALIGN, IMAGIC [3]
- IMAGIC, CTFIT, CTFFIND3 [3]
- IMIRS [3]
- ISOLDE [3]
- PEET [3]
- REFMAC [3]
- RELION, 1.2 [3]
- RELION, CTFFIND3, EMAN2 [3]
- SPARX [3]
- SPIDER, BSOFT, EMAN [3]
- XMIPP, SPIDER, EMAN [3]
- CHIMERA, VEDA UROX , MODELLER FLEX-EM [2]
- E2HELIXBOXER [2]
- EMAN, FREALIGN [2]
- EMAN, SPIDER [2]
- EMAN1.9, EMAN2, XMIPP, BSOFT [2]
- IMAGIC, SPIDER, EMAN [2]
- IMAGIC-5, TIGRIS [2]
- IMOD, PROTOMO, I3, EMAN [2]
- RELION1.3 [2]
- RELION1.4 [2]
- SAVR [2]
- SIMPLE [2]
- SPIDER, RELION [2]
- XMIPP, EMAN, SPIDER [2]
- XMIPP, SPIDER [2]
- XSCALE [2]
- ADPEM [1]
- AUTO [1]
- AV3 [1]
- BSOFT, EMAN, XMIPP, SPIDER, IHRSR [1]
- BSOFT, SPIDER, IHRSR [1]
- CFTFIND [1]
- CHIMERA, COOT [1]
- CHIMERA, MDFF [1]
- CHIMERA, MODELLER, YUP.SCX [1]
- CHIMERA, VEDA [1]
- CHIMERA, YUP.SCX [1]
- CNS 1.3 [1]
- CRYOSPAR [1]
- CTFFIND3, RELION [1]
- CTFFIND3, RELION, BSOFT [1]
- DIREX [1]
- DYNAMO [1]
- EMAN, IMAGIC, SPIDER, XMIPP [1]
- EMAN, PYTHON SCRIPT FOR ASYMMETRIC RECONSTRUCTION [1]
- EMAN,IMAGIC [1]
- EMAN1, EMAN2 [1]
- EMAN1.8 [1]
- EMPFT, POR, P3DR [1]
- FITPDB2EM [1]
Microscope
- FEI TITAN KRIOS [4200]
- TFS KRIOS [1413]
- FEI TALOS ARCTICA [332]
- ZEISS LIBRA120PLUS [202]
- TFS GLACIOS [183]
- FEI TECNAI F20 [114]
- FEI POLARA 300 [73]
- FEI TECNAI ARCTICA [60]
- FEI TITAN [58]
- TFS TALOS [44]
- JEOL CRYO ARM 300 [40]
- FEI TECNAI F30 [33]
- FEI TECNAI 12 [29]
- JEOL 2200FS [24]
- FEI/PHILIPS CM200FEG [23]
- FEI TECNAI 20 [17]
- JEOL 2010F [14]
- TFS TITAN THEMIS [14]
- JEOL 3200FS [12]
- TFS TALOS F200C [11]
- FEI/PHILIPS CM300FEG/T [10]
- JEOL 2100 [10]
- FEI TECNAI SPIRIT [8]
- JEOL 1200EXII [8]
- JEOL CRYO ARM 200 [8]
- JEOL 1230 [7]
- JEOL 2100F [7]
- FEI MORGAGNI [5]
- FEI/PHILIPS CM200FEG/ST [5]
- JEOL 2200FSC [5]
- JEOL 1200EX [4]
- JEOL 2010 [3]
- JEOL 3200FSC [3]
- FEI/PHILIPS CM120T [2]
- FEI/PHILIPS CM200T [2]
- FEI/PHILIPS EM420 [2]
- JEOL 1010 [2]
- JEOL 1400 [2]
- FEI TECNAI SPHERA [1]
- FEI/PHILIPS CM300FEG/HE [1]
- JEOL 1400/HR YPS FEG [1]
- JEOL 2000EX [1]
- JEOL 3000SFF [1]
- TFS TUNDRA [1]
Electron Source
- FIELD EMISSION GUN [6684]
- LAB6 [261]
- TUNGSTEN HAIRPIN [26]
- OTHER [19]
Film or detector model
- GATAN K3 6K X 4K [1860]
- GATAN K3 BIOQUANTUM 6K X 4K [1590]
- GATAN K2 SUMMIT 4K X 4K [1374]
- FEI FALCON IV 4K X 4K [485]
- FEI FALCON III 4K X 4K [462]
- GATAN K2 QUANTUM 4K X 4K [403]
- GATAN ULTRASCAN 4000 4K X 4K [290]
- TFS FALCON 4I 4K X 4K [112]
- FEI FALCON II 4K X 4K [104]
- KODAK SO-163 FILM [94]
- GATAN K3 BIOCONTINUUM 6K X 4K [28]
- OTHER [25]
- TVIPS TEMCAM-F416 4K X 4K [18]
- FEI EAGLE 4K X 4K [15]
- FEI CETA 4K X 4K [14]
- GATAN K2 4K X 4K [14]
- DIRECT ELECTRON DE-20 5K X 3K [11]
- GATAN K2 BASE 4K X 4K [11]
- GATAN ULTRASCAN 1000 2K X 2K [9]
- TVIPS TEMCAM-F415 4K X 4K [9]
- DIRECT ELECTRON DE-16 4K X 4K [7]
- GENERIC GATAN [7]
- DIRECT ELECTRON DE-64 8K X 8K [6]
- GENERIC TVIPS 4K X 4K [6]
- FEI EAGLE 2K X 2K [5]
- GATAN K2 IS 4K X 4K [5]
- KODAK 4489 FILM [5]
- FEI FALCON I 4K X 4K [4]
- GENERIC TVIPS [4]
- DIRECT ELECTRON DE-10 5K X 4K [3]
- GENERIC GATAN 4K X 4K [3]
- DECTRIS ARINA 0.2K X 0.2K [1]
- DECTRIS SINGLA 1K X 1K [1]
- DIRECT ELECTRON DE-12 4K X 3K [1]
- GATAN ULTRASCAN 10000 10K X 10K [1]
- GENERIC TVIPS 2K X 2K [1]
- TVIPS TEMCAM-F816 8K X 8K [1]
EMPIAR Experiment type
- EMDB [139]
EMPIAR Image category
- MICROGRAPHS - MULTIFRAME [127]
- MICROGRAPHS - SINGLE FRAME [27]
- PICKED PARTICLES - SINGLE FRAME - PROCESSED [8]
- PICKED PARTICLES - SINGLE FRAME - UNPROCESSED [6]
- TILT SERIES [3]
- PICKED PARTICLES - MULTIFRAME - PROCESSED [2]
External links
- PDB [283]
- UniProt [274]
- PDBe-Kb [258]
- InterPro [244]
- Gene Ontology [242]
- AlphaFold DB [241]
- Pfam [225]
- ChEBI [189]
- DrugBank [182]
- ChEMBL [171]
- EMDB [139]
- Complex Portal [121]
- EMPIAR [27]
- SCOP2 [6]
- CATH [4]
Release date: March 4, 2026
Dataset size: 14.1 TB
Experiment type: EMDB
Dataset size: 14.1 TB
Experiment type: EMDB
Richman DE, Wendorff TJ, Rashid F, Beck C, Johnson HR, Eckerty RA, Fogg JM, Baker ML, Zechiedrich L, Berger JM
To Be Published
Image sets:
- Unaligned eer micrographs of M mazei Top6(A:E342Q)-306 bp minicircle DNA-ADPNP complex
Release date: March 4, 2026
Resolution: 2.84 Å
EM Method: Single-particle
Fitted PDBs: 8v9t
Q-score: 0.385
Resolution: 2.84 Å
EM Method: Single-particle
Fitted PDBs: 8v9t
Q-score: 0.385
Shatarupa A, Brown D, Olinares PDB, Chase J, Isiorho E, Chait BT, Jeruzalmi D
Nucleic Acids Res (2025) 53 [ Pubmed: 41312769 DOI: doi:10.1093/nar/gkaf1139 ]
Release date: March 4, 2026
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 9mi8
Q-score: 0.314
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 9mi8
Q-score: 0.314
Sverzhinsky A, Xue H, Langelier MF, Muniz Correa MV, Del Mundo J, Classen S, Hammel M, Rothenberg E, Pascal JM
Nat Commun (2026) [ Pubmed: 41698892 DOI: doi:10.1038/s41467-026-69375-3 ]
Chaplin AK, Hall C
To Be Published
Release date: March 4, 2026
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 9if5
Q-score: 0.417
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 9if5
Q-score: 0.417
Spagnolo L, Sun YE, Aspinall L, Joseph AP, Stark WM, Colloms SD
To Be Published
Release date: March 4, 2026
Resolution: 4.41 Å
EM Method: Single-particle
Fitted PDBs: 9ig8
Q-score: 0.289
Resolution: 4.41 Å
EM Method: Single-particle
Fitted PDBs: 9ig8
Q-score: 0.289
Chaplin AK, Zahid S
To Be Published
Release date: March 4, 2026
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 9igj
Q-score: 0.329
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 9igj
Q-score: 0.329
Xiao T, Crowe-McAuliffe C, Ochmann M, Du Y, Hou T, Chen Y, Zhu F, Seyednasrollah F, Osmala M, Vanharanta S, Morgunova E, Cramer P, Rogerson C, Dienemann C, Taipale J
To Be Published
Release date: March 4, 2026
Resolution: 20.0 Å
EM Method: Subtomogram averaging
Resolution: 20.0 Å
EM Method: Subtomogram averaging
Fatmaoui F, Carrivain P, Taiki F, Iusupova A, Grewe D, Hagen W, Jakob B, Victor JM, Leforestier A, Eltsov M
EMBO J (2026) [ DOI: doi:10.1038/s44318-026-00701-7 Pubmed: 41663843 ]
Kristoffersen EL, Zwergius NH, Vallina NS, Gluck N, Stange A, Desdorf L, Civit L, Geary C, Kjems J, Valero J, Andersen ES
To Be Published
Release date: March 4, 2026
Resolution: 4.5 Å
EM Method: Single-particle
Resolution: 4.5 Å
EM Method: Single-particle
Reddavide FV, Toft-Bertelsen TL, Drulyte I, Gutgsell AR, Nguyen D, Bonetti S, Vafia K, Tournillon AS, Heiden S, Grosser D, Iric K, Diez V, MacAulay N, Geschwindner S, Thompson M, Frauenfeld J, Loving R
bioRxiv (2026) [ DOI: doi:10.64898/2026.01.27.701919 ]
Filter By
Current Database
- EMDB [6990]
- EMPIAR [139]
Current status
- REL [7129]
Sample type
- Complex [6299]
- Protein [5012]
- DNA [3396]
- Ligand [2892]
- RNA [1386]
- Sample [305]
- Virus [288]
- Cellular component [140]
- Cell [59]
- Other [59]
- Tissue [9]
- Em label [1]
Organism
- Synthetic construct [2196]
- Homo sapiens [2158]
- Xenopus laevis [637]
- Escherichia coli [575]
- Saccharomyces cerevisiae [490]
- Escherichia coli [263]
- Saccharomyces cerevisiae [251]
- Enterobacteria phage m13 [153]
- Mus musculus [144]
- Sus scrofa [138]
- Streptococcus pyogenes [81]
- Escherichia virus t7 [75]
- Mycobacterium tuberculosis [71]
- Dna molecule [55]
- Arabidopsis thaliana [54]
- Drosophila melanogaster [50]
- Human immunodeficiency virus 1 [49]
- Monkeypox virus [48]
- African swine fever virus [44]
- Thermus thermophilus [44]
- Human herpesvirus 1 [39]
- Simian virus 40 [37]
- Chaetomium thermophilum [37]
- Pseudomonas aeruginosa [37]
- Enterobacteria phage t4 [35]
- Mycobacterium tuberculosis [33]
- Bacillus subtilis [32]
- Saccharomyces cerevisiae [32]
- Vibrio cholerae [30]
- Escherichia phage lambda [29]
- Mycoplasma pneumoniae [29]
- Komagataella phaffii [29]
- Escherichia coli [28]
- Mycolicibacterium smegmatis [27]
- Bacillus subtilis [26]
- Klebsiella pneumoniae [26]
- Paramecium bursaria chlorella virus 1 [25]
- Streptococcus thermophilus [25]
- Scytonema hofmannii [25]
- Streptococcus thermophilus [24]
- (no species) [24]
- Bos taurus [24]
- Enterobacteria phage t4 [23]
- Maribacter polysiphoniae [22]
- Komagataella phaffii [22]
- Amanita phalloides [22]
- Sus scrofa [22]
- Severe acute respiratory syndrome coronavirus [21]
- Streptococcus pyogenes [20]
- Human herpesvirus 1 [19]
- Human cytomegalovirus [19]
- (no species) [19]
- Unidentified adenovirus [18]
- Thermoflavifilum thermophilum [18]
- Acetivibrio thermocellus [18]
- Peltigera membranacea [18]
- Acinetobacter baumannii [18]
- Tetrahymena thermophila [18]
- Gallus gallus [18]
- Tetrahymena thermophila [17]
- Streptomyces coelicolor [16]
- Staphylococcus aureus [16]
- Pseudomonas aeruginosa [16]
- Escherichia phage mu [16]
- Escherichia phage lambda [15]
- Mycolicibacterium smegmatis [15]
- Saccharolobus solfataricus [15]
- Vibrio cholerae [15]
- Danio rerio [15]
- Vaccinia virus [14]
- Human cytomegalovirus [14]
- Selenomonas sp. [14]
- Chaetomium thermophilum [14]
- Streptomyces phage phic31 [13]
- Photorhabdus thracensis [13]
- Mycobacterium phage bxb1 [13]
- Spodoptera frugiperda [13]
- Escherichia coli [13]
- Simian virus 40 [12]
- Pseudomonas virus prd1 [12]
- Acidaminococcus sp. (strain bv3l6) [12]
- Geobacillus stearothermophilus [12]
- Xenopus borealis [12]
- Salmonella enterica [12]
- Bacillus phage spp1 [11]
- Bacillus phage phi29 [11]
- Adeno-associated dependoparvovirus a [11]
- Synthetic rna [11]
- Thermus thermophilus [11]
- Thermococcus kodakarensis [11]
- Alphabaculovirus aucalifornicae [11]
- Aquifex aeolicus [11]
- Human mastadenovirus c [10]
- Bacillus thuringiensis [10]
- Pyrococcus furiosus [10]
- Saccharolobus solfataricus [10]
- Thermus thermophilus [10]
- Alkalihalobacillus halodurans [10]
- Pyrococcus abyssi [10]
- Schizosaccharomyces pombe [10]
EM Method
- Single-particle [6037]
- Tomography [753]
- Helical reconstruction [128]
- Subtomogram averaging [69]
- Electron Crystallography [3]
Resolution
- < 2Å [20]
- ≥ 2Å and < 3Å [1253]
- ≥ 3Å and < 4Å [2980]
- ≥ 4Å and < 5Å [805]
- ≥ 5Å and < 6Å [165]
- ≥ 6Å and < 8Å [340]
- ≥ 8Å and < 12Å [235]
- ≥ 12Å and < 16Å [98]
- ≥ 16Å and < 20Å [110]
- ≥ 20Å and < 30Å [172]
- ≥ 30Å [542]
Model molecular weight
- 50-100 kDa [12]
- 100-250 kDa [59]
- 250-500 kDa [84]
- 500-1000 kDa [50]
- 1-2 MDa [36]
- 2-5 MDa [35]
- 5-10 MDa [2]
- > 10 MDa [3]
Release Date
- 2026 [297]
- 2025 [1860]
- 2024 [1136]
- 2023 [1145]
- 2022 [699]
- 2021 [487]
- 2020 [419]
- 2019 [299]
- 2018 [309]
- 2017 [126]
- 2016 [107]
- 2015 [53]
- 2014 [28]
- 2013 [59]
- 2012 [21]
- 2011 [16]
- 2010 [12]
- 2009 [14]
- 2008 [10]
- 2007 [9]
- 2006 [16]
- 2005 [1]
- 2004 [1]
- 2003 [5]
Author by name
- Liu J [737]
- Ren G [715]
- Zhang M [610]
- Wang S [413]
- Wu H [393]
- Hu Z [356]
- Gang O [343]
- Cramer P [261]
- Bustamante C [227]
- Tao J [225]
- Diaz-celis C [224]
- Ashby PD [223]
- Celis CD [223]
- Liu JF [223]
- Zhang Y [168]
- Zhang X [164]
- Li H [161]
- Wang C [156]
- Wang H [147]
- Liu Y [144]
- Dienemann C [140]
- Yang W [140]
- Lei D [135]
- Zhou L [134]
- Huang C [133]
- Castro C [131]
- Castro CE [131]
- Huang CM [131]
- Marras A [131]
- Marras AE [131]
- Su H [131]
- Su HJ [131]
- Li J [128]
- Li Z [128]
- Kurumizaka H [127]
- Wang Y [121]
- Chen X [118]
- Darst SA [114]
- Wang X [108]
- Chen Z [106]
- Nogales E [104]
- Dietz H [103]
- Li X [97]
- Chen J [95]
- Liu L [94]
- Zhou ZH [94]
- Chen Y [92]
- Li Y [92]
- Wang Q [90]
- Yang Y [90]
- Takizawa Y [88]
- Xu Y [88]
- Hopfner KP [87]
- Zhang Z [87]
- Campbell EA [84]
- Li W [84]
- Feng Y [83]
- Urlaub H [83]
- Gellert M [82]
- He Y [80]
- Li S [80]
- Zhang J [79]
- Wang L [78]
- Yeeles JTP [77]
- Chen K [76]
- Zhang H [76]
- Muller CW [74]
- Zhang L [74]
- Ebright RH [73]
- Halic M [72]
- Taylor DW [71]
- Yu Z [68]
- Gao Y [66]
- Gao F [65]
- Liu X [65]
- Costa A [64]
- Kujirai T [64]
- Liu B [63]
- Ehara H [61]
- Farnung L [61]
- Li M [61]
- Ren Y [61]
- Sekine SI [61]
- Buck M [60]
- Ye F [60]
- Zhang F [60]
- Wang F [59]
- Zhao X [59]
- Bilokapic S [58]
- Chen W [58]
- Liu H [58]
- Xu J [57]
- Zhang S [57]
- Zhao D [57]
- Takacs M [55]
- Weixlbaumer A [55]
- Zhang K [55]
- Cavadini S [54]
- He Q [54]
- Jones ML [54]
Author by ORCID
- Kurumizaka H [6]
- Li H [6]
- Czarnocki-cieciura M [5]
- Skowronek K [5]
- Ramakrishnan V [5]
- Beckmann R [5]
- Campbell EA [4]
- Takizawa Y [4]
- Shirouzu M [4]
- Wilson DN [4]
- Cheng J [4]
- Nikolay R [4]
- Frank J [3]
- Cramer P [3]
- Becker T [3]
- Li N [3]
- Nowotny M [3]
- Barford D [3]
- Greber BJ [3]
- Brown A [3]
- Chen C [3]
- Mer G [3]
- Spahn CMT [3]
- Burger J [3]
- Fraser JS [3]
- Amunts A [3]
- Demo G [3]
- Arragain B [3]
- Schatz DG [3]
- Taylor DW [3]
- Botuyan MV [3]
- Cushing VI [3]
- Darst SA [3]
- Chen Z [3]
- Muller CW [3]
- Gao N [3]
- Orlova EV [3]
- Lauer SM [3]
- Caffrey B [2]
- Hamdan SM [2]
- Blaza JN [2]
- Kujirai T [2]
- Schneider C [2]
- Bell CE [2]
- Ishiguro K [2]
- Nozawa K [2]
- Koh AF [2]
- Hayashi G [2]
- Ekemezie CL [2]
- Hill CH [2]
- Southworth DR [2]
- Itoh Y [2]
- Bochtler M [2]
- Yin P [2]
- Sekine SI [2]
- Herzog F [2]
- Webster MW [2]
- Takacs M [2]
- Hirst J [2]
- Wright JJ [2]
- O'donnell ME [2]
- Barrientos A [2]
- Doudna JA [2]
- Lu P [2]
- Hardwick SW [2]
- Mielke T [2]
- Wang HW [2]
- Weixlbaumer A [2]
- Tehseen M [2]
- Zajko W [2]
- Hoffmann R [2]
- Chirgadze DY [2]
- Ma J [2]
- Muir KW [2]
- Yokoyama T [2]
- Sun J [2]
- Ilangovan A [2]
- Rybak MY [2]
- Brown CR [2]
- Hoffmann NA [2]
- Li D [2]
- Braxton JR [2]
- Jiang W [2]
- Ali S [2]
- Barbazanges M [2]
- Zhang Y [2]
- Chen X [2]
- Wu X [2]
- Lanphere C [2]
- Tse E [2]
- Chen J [2]
- Pardon E [2]
- Qin B [2]
- Huang Y [2]
- Shi Y [2]
- He J [2]
- Slyvka A [2]
- Roumeliotis TI [2]
- Yang W [2]
- Steyaert J [2]
Journal
- NAT COMMUN [1508]
- TO BE PUBLISHED [937]
- NATURE [758]
- MOL CELL [512]
- NAT STRUCT MOL BIOL [492]
- SCIENCE [434]
- NUCLEIC ACIDS RES [368]
- PNAS [334]
- BIORXIV [253]
- SCI ADV [210]
- CELL [200]
- ELIFE [154]
- STRUCTURE [106]
- EMBO J [99]
- CELL RES [82]
- J MOL BIOL [72]
- NAT CHEM BIOL [56]
- J BIOL CHEM [54]
- CELL REP [53]
- CELL DISCOV [47]
- COMMUN BIOL [34]
- ACTA CRYSTALLOGR D STRUCT BIOL [33]
- J VIROL [32]
- PLOS BIOL [27]
- GENES DEV [24]
- RES SQ [24]
- ACS NANO [21]
- INT J MOL SCI [20]
- MBIO [20]
- NAT MATER [20]
- EMBO REP [17]
- PROTEIN CELL [17]
- COMMUN CHEM [16]
- ISCIENCE [16]
- SCI REP [15]
- NAT MICROBIOL [14]
- NAT PLANTS [14]
- J AM CHEM SOC [12]
- PLOS PATHOG [12]
- NAT CATAL [11]
- FEBS J [10]
- NAT NANOTECHNOL [10]
- PROTEIN SCI [10]
- GENES CELLS [9]
- J MED CHEM [9]
- J STRUCT BIOL [9]
- NANO LETTERS [9]
- PNAS NEXUS [9]
- BIOCHEM J [8]
- CELL REP PHYS SCI [8]
- PLOS ONE [7]
- PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES USA [7]
- VIROLOGY [7]
- J CELL BIOL [6]
- NAT BIOTECHNOL [6]
- STRUCTURE (LONDON, ENGLAND : 1993) [6]
- FRONT PLANT SCI [5]
- NANOSCALE [5]
- PLANT CELL [5]
- ACS CATAL [4]
- ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [4]
- ANGEW CHEM INT ED ENGL [4]
- INT J BIOL MACROMOL [4]
- PLANT COMMUN. [4]
- VIRUSES [4]
- ACS INFECT DIS. [3]
- BIOCHEM BIOPHYS RES COMMUN [3]
- BIOCHEMISTRY [3]
- BIOCHIM BIOPHYS ACTA [3]
- CHEM [3]
- DNA REPAIR (AMST) [3]
- EXP.MOL.MED. [3]
- INNOVATION (NY) [3]
- J MOL CELL BIOL [3]
- LIFE SCI ALLIANCE [3]
- NAT METHODS [3]
- NATURE CATALYSIS [3]
- ACTA NEUROPATHOL [2]
- ADV SCI [2]
- CELL GENOM [2]
- CELL HOST MICROBE [2]
- CURR BIOL [2]
- EXP MOL MED [2]
- IUCRJ [2]
- J BACTERIOL [2]
- J.BIOCHEM. [2]
- MOL BIOL CELL [2]
- MOLECULES [2]
- NAR MOL MED [2]
- NAT CELL BIOL [2]
- NAT CHEM [2]
- OPEN BIOL [2]
- PROCEEDINGS OF THE ACADEMY OF SCIENCES USA [2]
- SCI SIGNAL [2]
- SIGNAL TRANSDUCT TARGET THER [2]
- TRANSCRIPTION [2]
- VIROL J [2]
- ACS APPL MATER INTERFACES [1]
- ACS CHEM BIOL [1]
- ACS MED.CHEM.LETT. [1]
Software
- RELION [1733]
- CRYOSPARC [1680]
- GCTF [468]
- TOMOCTF [363]
- IPET [344]
- SPIDER [252]
- CTFFIND [235]
- WARP [65]
- CISTEM [46]
- CHIMERA [36]
- EMAN [36]
- COOT [35]
- EMAN2 [32]
- JSPR [32]
- IMAGIC [17]
- PHENIX [17]
- EMAN2, SPARX [16]
- FREALIGN [15]
- IMOD [15]
- IPET, FETR, SPIDER, IMOD, EMAN, AND, EMAN2 [14]
- PYTOM [12]
- XMIPP [12]
- AUTO3DEM [10]
- TOMO3D [9]
- UCSF CHIMERAX [9]
- EMREADY [8]
- JSPR, EMAN2, EMAN [8]
- PRIISM/IVE [8]
- CRYOLO [7]
- UCSF CHIMERA [7]
- CTFFIND3 [6]
- EMAN2, RELION [6]
- IMAGIC, SPIDER [6]
- EMAN, IMAGIC [5]
- EMAN, XMIPP [5]
- MPSA, EMAN, EMAN2 [5]
- SITUS [5]
- SPIDER, EMAN [5]
- IMOD, DYNAMO [4]
- IMOD, ETOMO, , PEET , SPIDER [4]
- IMOD, RAPTOR, PROTOMO [4]
- JSPR, EMAN, EMAN2 [4]
- MRC [4]
- SPARX, EMAN2, FREALIGN [4]
- CHIMERA, SITUS [3]
- CTFFIND4 [3]
- CTFFIND4, RELION, BSOFT [3]
- EMFIT [3]
- EPU [3]
- FREALIGN, IMAGIC [3]
- IMAGIC, CTFIT, CTFFIND3 [3]
- IMIRS [3]
- ISOLDE [3]
- PEET [3]
- REFMAC [3]
- RELION, 1.2 [3]
- RELION, CTFFIND3, EMAN2 [3]
- SPARX [3]
- SPIDER, BSOFT, EMAN [3]
- XMIPP, SPIDER, EMAN [3]
- CHIMERA, VEDA UROX , MODELLER FLEX-EM [2]
- E2HELIXBOXER [2]
- EMAN, FREALIGN [2]
- EMAN, SPIDER [2]
- EMAN1.9, EMAN2, XMIPP, BSOFT [2]
- IMAGIC, SPIDER, EMAN [2]
- IMAGIC-5, TIGRIS [2]
- IMOD, PROTOMO, I3, EMAN [2]
- RELION1.3 [2]
- RELION1.4 [2]
- SAVR [2]
- SIMPLE [2]
- SPIDER, RELION [2]
- XMIPP, EMAN, SPIDER [2]
- XMIPP, SPIDER [2]
- XSCALE [2]
- ADPEM [1]
- AUTO [1]
- AV3 [1]
- BSOFT, EMAN, XMIPP, SPIDER, IHRSR [1]
- BSOFT, SPIDER, IHRSR [1]
- CFTFIND [1]
- CHIMERA, COOT [1]
- CHIMERA, MDFF [1]
- CHIMERA, MODELLER, YUP.SCX [1]
- CHIMERA, VEDA [1]
- CHIMERA, YUP.SCX [1]
- CNS 1.3 [1]
- CRYOSPAR [1]
- CTFFIND3, RELION [1]
- CTFFIND3, RELION, BSOFT [1]
- DIREX [1]
- DYNAMO [1]
- EMAN, IMAGIC, SPIDER, XMIPP [1]
- EMAN, PYTHON SCRIPT FOR ASYMMETRIC RECONSTRUCTION [1]
- EMAN,IMAGIC [1]
- EMAN1, EMAN2 [1]
- EMAN1.8 [1]
- EMPFT, POR, P3DR [1]
- FITPDB2EM [1]
Microscope
- FEI TITAN KRIOS [4200]
- TFS KRIOS [1413]
- FEI TALOS ARCTICA [332]
- ZEISS LIBRA120PLUS [202]
- TFS GLACIOS [183]
- FEI TECNAI F20 [114]
- FEI POLARA 300 [73]
- FEI TECNAI ARCTICA [60]
- FEI TITAN [58]
- TFS TALOS [44]
- JEOL CRYO ARM 300 [40]
- FEI TECNAI F30 [33]
- FEI TECNAI 12 [29]
- JEOL 2200FS [24]
- FEI/PHILIPS CM200FEG [23]
- FEI TECNAI 20 [17]
- JEOL 2010F [14]
- TFS TITAN THEMIS [14]
- JEOL 3200FS [12]
- TFS TALOS F200C [11]
- FEI/PHILIPS CM300FEG/T [10]
- JEOL 2100 [10]
- FEI TECNAI SPIRIT [8]
- JEOL 1200EXII [8]
- JEOL CRYO ARM 200 [8]
- JEOL 1230 [7]
- JEOL 2100F [7]
- FEI MORGAGNI [5]
- FEI/PHILIPS CM200FEG/ST [5]
- JEOL 2200FSC [5]
- JEOL 1200EX [4]
- JEOL 2010 [3]
- JEOL 3200FSC [3]
- FEI/PHILIPS CM120T [2]
- FEI/PHILIPS CM200T [2]
- FEI/PHILIPS EM420 [2]
- JEOL 1010 [2]
- JEOL 1400 [2]
- FEI TECNAI SPHERA [1]
- FEI/PHILIPS CM300FEG/HE [1]
- JEOL 1400/HR YPS FEG [1]
- JEOL 2000EX [1]
- JEOL 3000SFF [1]
- TFS TUNDRA [1]
Electron Source
- FIELD EMISSION GUN [6684]
- LAB6 [261]
- TUNGSTEN HAIRPIN [26]
- OTHER [19]
Film or detector model
- GATAN K3 6K X 4K [1860]
- GATAN K3 BIOQUANTUM 6K X 4K [1590]
- GATAN K2 SUMMIT 4K X 4K [1374]
- FEI FALCON IV 4K X 4K [485]
- FEI FALCON III 4K X 4K [462]
- GATAN K2 QUANTUM 4K X 4K [403]
- GATAN ULTRASCAN 4000 4K X 4K [290]
- TFS FALCON 4I 4K X 4K [112]
- FEI FALCON II 4K X 4K [104]
- KODAK SO-163 FILM [94]
- GATAN K3 BIOCONTINUUM 6K X 4K [28]
- OTHER [25]
- TVIPS TEMCAM-F416 4K X 4K [18]
- FEI EAGLE 4K X 4K [15]
- FEI CETA 4K X 4K [14]
- GATAN K2 4K X 4K [14]
- DIRECT ELECTRON DE-20 5K X 3K [11]
- GATAN K2 BASE 4K X 4K [11]
- GATAN ULTRASCAN 1000 2K X 2K [9]
- TVIPS TEMCAM-F415 4K X 4K [9]
- DIRECT ELECTRON DE-16 4K X 4K [7]
- GENERIC GATAN [7]
- DIRECT ELECTRON DE-64 8K X 8K [6]
- GENERIC TVIPS 4K X 4K [6]
- FEI EAGLE 2K X 2K [5]
- GATAN K2 IS 4K X 4K [5]
- KODAK 4489 FILM [5]
- FEI FALCON I 4K X 4K [4]
- GENERIC TVIPS [4]
- DIRECT ELECTRON DE-10 5K X 4K [3]
- GENERIC GATAN 4K X 4K [3]
- DECTRIS ARINA 0.2K X 0.2K [1]
- DECTRIS SINGLA 1K X 1K [1]
- DIRECT ELECTRON DE-12 4K X 3K [1]
- GATAN ULTRASCAN 10000 10K X 10K [1]
- GENERIC TVIPS 2K X 2K [1]
- TVIPS TEMCAM-F816 8K X 8K [1]
EMPIAR Experiment type
- EMDB [139]
EMPIAR Image category
- MICROGRAPHS - MULTIFRAME [127]
- MICROGRAPHS - SINGLE FRAME [27]
- PICKED PARTICLES - SINGLE FRAME - PROCESSED [8]
- PICKED PARTICLES - SINGLE FRAME - UNPROCESSED [6]
- TILT SERIES [3]
- PICKED PARTICLES - MULTIFRAME - PROCESSED [2]
External links
- PDB [283]
- UniProt [274]
- PDBe-Kb [258]
- InterPro [244]
- Gene Ontology [242]
- AlphaFold DB [241]
- Pfam [225]
- ChEBI [189]
- DrugBank [182]
- ChEMBL [171]
- EMDB [139]
- Complex Portal [121]
- EMPIAR [27]
- SCOP2 [6]
- CATH [4]