Structure for peptidase S13.002: D-Ala-D-Ala carboxypeptidase (Actinomadura-type)

Summary Alignment Tree Sequences Sequence features Distribution Structure Literature Substrates

PDB	Organism	Resolution	Comment
1W79	Actinomadura sp. R39	1.80 Å	mature
Only one monomer of the homotetramer is shown. Catalytic residues are shown in ball-and-stick representation: Ser98 in orange, Lys101 in blue, and Ser347 in orange.

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TERTIARY STRUCTURE DATA
Comment	Resolution	PDB	PDBe	SCOP	CATH	PDBSum	Proteopedia	Reference
Actinomadura sp. R39
mature peptidase	1.80 Å	1W79	1W79	1W79	1W79	1W79	1W79	Sauvage et al., 2005
mature peptidase	2.85 Å	1W8Q	1W8Q	1W8Q	1W8Q	1W8Q	1W8Q	Sauvage et al., 2005
mature peptidase	2.40 Å	1W8Y	1W8Y	1W8Y	1W8Y	1W8Y	1W8Y	Sauvage et al., 2005
complex with peptidoglycan-mimetic cephalosporin	2.40 Å	2VGJ	2VGJ	2VGJ	2VGJ	2VGJ	2VGJ	Sauvage et al., 2008
complex with peptidoglycan-mimetic cephalosporin	2.25 Å	2VGK	2VGK	2VGK	2VGK	2VGK	2VGK	Sauvage et al., 2008
mature peptidase	2.20 Å	2WKE	2WKE	2WKE	2WKE	2WKE	2WKE	Sauvage et al., 2009
mature peptidase	2.40 Å	2XDM	2XDM	2XDM	2XDM	2XDM	2XDM	Dzhekieva et al., 2010
mature peptidase	2.80 Å	2XK1	2XK1	2XK1	2XK1	2XK1	2XK1	Woon et al., 2011
mature peptidase	2.40 Å	2XLN	2XLN	2XLN	2XLN	2XLN	2XLN	Woon et al., 2011
mature peptidase	2.70 Å	2Y4A	2Y4A	2Y4A	2Y4A	2Y4A	2Y4A	Zervosen et al., 2011
mature peptidase	2.60 Å	2Y55	2Y55	2Y55	2Y55	2Y55	2Y55	Zervosen et al., 2011
mature peptidase	2.50 Å	2Y59	2Y59	2Y59	2Y59	2Y59	2Y59	Zervosen et al., 2011
mature peptidase	2.60 Å	3ZCZ	3ZCZ	3ZCZ	3ZCZ	3ZCZ	3ZCZ	Dzhekieva et al., 2013
mature peptidase	3.10 Å	3ZVT	3ZVT	3ZVT	3ZVT	3ZVT	3ZVT	Zervosen et al., 2011
mature peptidase	2.00 Å	3ZVW	3ZVW	3ZVW	3ZVW	3ZVW	3ZVW	Zervosen et al., 2011
mature peptidase	2.65 Å	4B4X	4B4X	4B4X	4B4X	4B4X	4B4X
mature peptidase	2.20 Å	4B4Z	4B4Z	4B4Z	4B4Z	4B4Z	4B4Z
mature peptidase	2.15 Å	4BEN	4BEN	4BEN	4BEN	4BEN	4BEN
Bacillus subtilis
mature peptidase	2.10 Å	1W5D	1W5D	1W5D	1W5D	1W5D	1W5D	Duez et al., 2001
complex with a peptidoglycan mimetic peptide.	2.80 Å	2J9P	2J9P	2J9P	2J9P	2J9P	2J9P	Sauvage et al., 2007