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Pedosphaera parvula

Taxonomy
Taxonomy database identifier: 1032527
Superkingdom Bacteria
Phylum Verrucomicrobia
Class Verrucomicrobiae
Order Verrucomicrobiales
Family Verrucomicrobia subdivision 3
Species parvula
Genus Pedosphaera
Peptidase View peptidase sequences from Pedosphaera parvula
Count of known and putative peptidases: 34, non-peptidase homologues 9
Completely sequences genomes from subspecies and strains Protein coding genes

To show all strains with completely sequenced genomes, click here.

Clan Family MEROPS ID Peptidase or homologue (subtype) MERNUM Gene Link Locus Megabases
AC A8 unassigned family A8 unassigned peptidases MER0426400 lspA
AC A8 unassigned family A8 unassigned peptidases MER0401442
AD A24 unassigned subfamily A24A unassigned peptidases MER0168732 Cflav_PD3944
AE A31 unassigned family A31 unassigned peptidases MER0142789 Cflav_PD5740
CA C39 non-peptidase homologue family C39 non-peptidase homologues MER0715727 Cflav_PD3332
CL C82 unassigned subfamily C82A unassigned peptidases MER0739905 Cflav_PD4495
CL C82 unassigned subfamily C82A unassigned peptidases MER0462075
CO C40 unassigned family C40 unassigned peptidases MER0164844
G- G5 unassigned family G5 unassigned peptidases MER0937494 Cflav_PD6425
G- G5 unassigned family G5 unassigned peptidases MER0939111 Cflav_PD0114
MA M1 unassigned family M1 unassigned peptidases MER0136588 Cflav_PD2733
MA M3 unassigned subfamily M3C unassigned peptidases MER0142434 Cflav_PD3333
MA M12 unassigned subfamily M12A unassigned peptidases MER0166731 Cflav_PD0283
MA M12 unassigned subfamily M12B unassigned peptidases MER0242537
MA M13 unassigned family M13 unassigned peptidases MER0166415 Cflav_PD0853
MA M36 unassigned family M36 unassigned peptidases MER0139667 Cflav_PD6057
MA M41 M41.021 FtsH peptidase (Thermotoga-type) MER0363470 ftsH Cflav_PD3863
MA M41 unassigned family M41 unassigned peptidases MER0142878
MA M41 unassigned family M41 unassigned peptidases MER0165332 Cflav_PD3620
MA M48 non-peptidase homologue subfamily M48C non-peptidase homologues MER0888102 Cflav_PD5180
MA M48 unassigned subfamily M48A unassigned peptidases MER0123924 Cflav_PD6296
MA M48 unassigned subfamily M48A unassigned peptidases MER0138897 Cflav_PD1926
MA M48 unassigned subfamily M48B unassigned peptidases MER0122526 Cflav_PD2401
MA M48 unassigned family M48 unassigned peptidases MER0885447 Cflav_PD4864
MA M48 unassigned family M48 unassigned peptidases MER0886436 Cflav_PD1324
MA M56 non-peptidase homologue family M56 non-peptidase homologues MER0934031 Cflav_PD1420
MA M56 unassigned family M56 unassigned peptidases MER0934026 Cflav_PD0339
MA M56 unassigned family M56 unassigned peptidases MER0144243 Cflav_PD2908
MA M56 unassigned family M56 unassigned peptidases MER0168888
MA M56 unassigned family M56 unassigned peptidases MER0191009
MC M14 non-peptidase homologue subfamily M14B non-peptidase homologues MER0469241
MD M15 unassigned subfamily M15D unassigned peptidases MER0142081 Cflav_PD4089
ME M16 non-peptidase homologue subfamily M16B non-peptidase homologues MER0164723 Cflav_PD5372
ME M16 non-peptidase homologue subfamily M16B non-peptidase homologues MER0164724 Cflav_PD5372
ME M16 non-peptidase homologue family M16 non-peptidase homologues MER0142697 Cflav_PD1528
ME M16 non-peptidase homologue family M16 non-peptidase homologues MER0392285 Cflav_PD1529
ME M16 non-peptidase homologue family M16 non-peptidase homologues MER0168567
ME M16 unassigned subfamily M16B unassigned peptidases MER0126443 Cflav_PD3260
ME M16 unassigned subfamily M16B unassigned peptidases MER0142696 Cflav_PD1528
ME M16 unassigned subfamily M16B unassigned peptidases MER0168508
MG M24 unassigned subfamily M24A unassigned peptidases MER0142788 map Cflav_PD4396
MG M24 unassigned subfamily M24B unassigned peptidases MER0165074 Cflav_PD3775
MH M20 non-peptidase homologue family M20 non-peptidase homologues MER0843186 Cflav_PD2325
MH M20 non-peptidase homologue family M20 non-peptidase homologues MER0847767 Cflav_PD2329
MH M20 unassigned subfamily M20B unassigned peptidases MER0166673 Cflav_PD0398
MH M20 unassigned family M20D unassigned peptidases MER0143081 Cflav_PD2169
MH M20 unassigned subfamily M20F unassigned peptidases MER0853757 Cflav_PD0297
MH M20 unassigned family M20 unassigned peptidases MER0369810 Cflav_PD2013
MH M28 unassigned subfamily M28F unassigned peptidases MER0190444 Cflav_PD4941
MH M42 non-peptidase homologue family M42 non-peptidase homologues MER0879367 Cflav_PD4651
MH M42 unassigned family M42 unassigned peptidases MER0124524 Cflav_PD2739
MJ M19 unassigned family M19 unassigned peptidases MER0143583 Cflav_PD2417
MJ M38 M38.972 dihydro-orotase MER0869018 pyrC
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0863987 Cflav_PD2317
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0859208 allB
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0860488 Cflav_PD1055
MM M50 non-peptidase homologue subfamily M50B non-peptidase homologues MER0893892 Cflav_PD0887
MM M50 unassigned family M50 unassigned peptidases MER0892557 Cflav_PD0353
MN M55 unassigned family M55 unassigned peptidases MER0138213 Cflav_PD3021
MO M23 non-peptidase homologue subfamily M23B non-peptidase homologues MER0387831 Cflav_PD1799
MO M23 non-peptidase homologue subfamily M23B non-peptidase homologues MER0389544 Cflav_PD6475
MO M23 non-peptidase homologue subfamily M23B non-peptidase homologues MER0479643
MQ M29 unassigned family M29 unassigned peptidases MER0143080 Cflav_PD2742
PA S1 S01.477 AlgW peptidase MER0327693 Cflav_PD5368
PA S1 unassigned subfamily S1C unassigned peptidases MER0408370
PA S1 unassigned subfamily S1C unassigned peptidases MER0408438
PA S1 unassigned subfamily S1C unassigned peptidases MER0408320
PA S46 unassigned family S46 unassigned peptidases MER0136893 Cflav_PD2575
PB C44 C44.001 amidophosphoribosyltransferase precursor MER0122095 Cflav_PD0637
PB C44 C44.003 glutamate synthase (NADPH) large chain MER0459003
PB C44 C44.003 glutamate synthase (NADPH) large chain MER0459004
PB C44 non-peptidase homologue family C44 non-peptidase homologues MER0455956
PB T1 T01.005 bacterial proteasome, beta component MER0168449 Cflav_PD4742
PB T1 unassigned subfamily T1B unassigned peptidases MER0482098
PB T3 T03.001 gamma-glutamyltransferase 1 (bacterial-type) MER0123157 Cflav_PD4533
PB T3 T03.025 oxamate amidohydrolase proenzyme (Klebsiella pneumonia) MER0379063 Cflav_PD2168
PB T3 unassigned family T3 unassigned peptidases MER0123925 Cflav_PD5193
PC C26 C26.957 GMP synthase MER0440500
PC C26 C26.959 TRP3 protein MER0436095
PC C26 C26.964 CTP synthetase MER0449426
PC C26 non-peptidase homologue family C26 non-peptidase homologues MER0451976
PC C26 unassigned family C26 unassigned peptidases MER0450713
PC C26 unassigned family C26 unassigned peptidases MER0439402
PC C26 unassigned family C26 unassigned peptidases MER0444814
PC C56 C56.001 PfpI peptidase MER0143872 Cflav_PD2350
PC C56 C56.001 PfpI peptidase MER0142879 Cflav_PD5378
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0913428 Cflav_PD1666
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0166518
PD N9 unassigned family N9 unassigned peptide lyases MER0277042 Cflav_PD5984
PE P1 unassigned family P01 unassigned peptidases MER0144244
PE T5 unassigned family T5 unassigned peptidases MER0380599 argJ Cflav_PD1187
SB S8 S08.123 KP-43 peptidase MER0166830 Cflav_PD0089
SB S8 non-peptidase homologue subfamily S8A non-peptidase homologues MER0973559 Cflav_PD3452
SB S8 unassigned subfamily S8A unassigned peptidases MER0978091 Cflav_PD2431
SB S8 unassigned subfamily S8A unassigned peptidases MER0192002 Cflav_PD5924
SB S8 unassigned subfamily S8A unassigned peptidases MER0136587 Cflav_PD4303
SB S8 unassigned subfamily S8A unassigned peptidases MER0192003
SB S53 unassigned family S53 unassigned peptidases MER0144067 Cflav_PD1073
SB S53 unassigned family S53 unassigned peptidases MER0275830 Cflav_PD1513
SC S9 S09.A77 dpf-6 g.p. (Caenorhabditis elegans) MER0139080
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0214310
SC S9 unassigned subfamily S9A unassigned peptidases MER1019326 Cflav_PD1238
SC S9 unassigned subfamily S9A unassigned peptidases MER0141037 Cflav_PD3453
SC S9 unassigned subfamily S9C unassigned peptidases MER0214838
SC S9 unassigned subfamily S9C unassigned peptidases MER0214839
SC S9 unassigned family S9 unassigned peptidases MER0212767
SC S9 unassigned family S9 unassigned peptidases MER0209148
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0208975
SC S33 unassigned family S33 unassigned peptidases MER0208700
SC S33 unassigned family S33 unassigned peptidases MER0215038
SC S33 unassigned family S33 unassigned peptidases MER0214578
SC S82 unassigned family S82 unassigned homologues MER0205299
SE S11 non-peptidase homologue family S11 non-peptidase homologues MER0948268 Cflav_PD3754
SE S12 unassigned family S12 unassigned peptidases MER0139493 Cflav_PD0810
SE S12 unassigned family S12 unassigned peptidases MER0123782
SE S12 unassigned family S12 unassigned peptidases MER0124361 Cflav_PD2234
SE S12 unassigned family S12 unassigned peptidases MER0355422 Cflav_PD5871
SE S12 unassigned family S12 unassigned peptidases MER0137442
SE S12 unassigned family S12 unassigned peptidases MER0165442 Cflav_PD3323
SE S12 unassigned family S12 unassigned peptidases MER0165587 Cflav_PD3036
SE S12 unassigned family S12 unassigned peptidases MER0354695 Cflav_PD2284
SE S12 unassigned family S12 unassigned peptidases MER0166351 Cflav_PD1101
SE S13 S13.002 D-Ala-D-Ala carboxypeptidase (Actinomadura-type) MER0166625 Cflav_PD0566
SE S13 unassigned family S13 unassigned peptidases MER0141408 Cflav_PD3325
SF S24 unassigned family S24 unassigned peptidases MER1044304 Cflav_PD6355
SF S24 unassigned family S24 unassigned peptidases MER1042737 Cflav_PD0676
SF S26 S26.026 PA1303 peptidase (Pseudomonas sp.) MER0165267 Cflav_PD3583
SF S26 non-peptidase homologue subfamily S26A non-peptidase homologues MER1047825 Cflav_PD3728
SF S26 non-peptidase homologue subfamily S26A non-peptidase homologues MER0246975
SF S26 non-peptidase homologue subfamily S26A non-peptidase homologues MER0247025
SF S26 unassigned subfamily S26A unassigned peptidases MER0246558 Cflav_PD3063
SF S26 unassigned subfamily S26A unassigned peptidases MER0246624
SF S26 unassigned family S26 unassigned peptidases MER0246482
SJ S16 S16.001 Lon-A peptidase MER0122347
SJ S16 non-peptidase homologue family S16 non-peptidase homologues MER1036641 Cflav_PD0774
SJ S16 unassigned family S16 unassigned peptidases MER0142262 lon Cflav_PD5399
SK S14 S14.001 peptidase Clp (type 1) MER0138898
SK S41 S41.004 C-terminal processing peptidase-3 MER0136304 Cflav_PD1283
SK S41 non-peptidase homologue subfamily S41A non-peptidase homologues MER1063008 Cflav_PD1032
SK S41 non-peptidase homologue subfamily S41A non-peptidase homologues MER0144882
SK S41 unassigned subfamily S41A unassigned peptidases MER0140541 Cflav_PD3557
SK S49 unassigned subfamily S49B unassigned peptidases MER0168835 Cflav_PD3773
SK S49 unassigned subfamily S49C unassigned peptidases MER1073134 Cflav_PD0499
SS S66 S66.001 murein tetrapeptidase LD-carboxypeptidase (Pseudomonas-type) MER0142613 Cflav_PD1760
ST S54 unassigned family S54 unassigned peptidases MER1077611 Cflav_PD4600
ST S54 unassigned family S54 unassigned peptidases MER1077058 Cflav_PD4148
ST S54 unassigned family S54 unassigned peptidases MER1082504 Cflav_PD4188
ST S54 unassigned family S54 unassigned peptidases MER1076763 Cflav_PD3877
ST S54 unassigned family S54 unassigned peptidases MER1079240 Cflav_PD1930
U- U32 unassigned family U32 unassigned peptidases MER0403465
U- U72 U72.001 Dop isopeptidase MER0398208
U- U72 U72.001 Dop isopeptidase MER0402623

GENOME ANALYSIS: Comparison with 12 completely sequenced genomes from phylum Verrucomicrobia
Family Comment
C39 significant presence (1 homologues)
M12 significant presence (2 homologues)
M13 significant presence (1 homologues)
M15 significant decrease in homologues (1 homologues)
M20 lineage specific expansion (6 homologues)
M36 significant presence (1 homologues)
M48 lineage specific expansion (6 homologues)
M55 significant presence (1 homologues)
M56 lineage specific expansion (5 homologues)
N9 significant presence (1 homologues)
P1 significant presence (1 homologues)
S13 significant presence (2 homologues)
S26 lineage specific expansion (7 homologues)
S46 significant presence (1 homologues)
S53 significant presence (2 homologues)
S66 significant presence (1 homologues)
S82 significant presence (1 homologues)
U32 significant decrease in homologues (1 homologues)

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