Polaromonas naphthalenivorans

Taxonomy
Taxonomy database identifier: 216465
Superkingdom Bacteria
Phylum Proteobacteria
Class Betaproteobacteria
Order Burkholderiales
Family Comamonadaceae
Genus Polaromonas
Species naphthalenivorans
Peptidase View peptidase sequences from Polaromonas naphthalenivorans
Count of known and putative peptidases: 77, non-peptidase homologues 19
Completely sequences genomes from subspecies and strains Protein coding genes

To show all strains with completely sequenced genomes, click here.

Clan Family MEROPS ID Peptidase or homologue (subtype) MERNUM Gene Link Locus Megabases
AA A32 unassigned family A32 unassigned peptidases MER0241771 Pnap_1079
AC A8 unassigned family A8 unassigned peptidases MER0062381 lspA Pnap_3230
AD A24 A24.001 type 4 prepilin peptidase 1 MER0063313 Pnap_0768
AE A31 A31.002 HyaD peptidase MER0062380 Pnap_1971
CD C14 unassigned subfamily C14B unassigned peptidases MER0081198 Pnap_1203
CD C14 unassigned subfamily C14B unassigned peptidases MER0081208 Pnap_2085
CL C82 unassigned subfamily C82A unassigned peptidases MER0463436 Pnap_3583
CO C40 C40.006 PgpA peptidase MER0094165 Pnap_1787
CO C40 unassigned family C40 unassigned peptidases MER0094164 Pnap_0829
MA M1 M01.005 alanyl aminopeptidase (bacterial-type) MER0081197 Pnap_1068
MA M3 unassigned subfamily M3A unassigned peptidases MER0081212 Pnap_2614
MA M41 M41.001 FtsH peptidase MER0063491 ftsH2 Pnap_2611
MA M41 unassigned family M41 unassigned peptidases MER0105638 ftsH1 Pnap_0392
MA M48 M48.002 HtpX peptidase MER0062378 htpX Pnap_3448
MA M48 unassigned subfamily M48A unassigned peptidases MER0063497 Pnap_1469
MA M48 unassigned subfamily M48B unassigned peptidases MER0062379 Pnap_3637
MA M48 unassigned subfamily M48C unassigned peptidases MER0081191 Pnap_0153
MA M48 unassigned subfamily M48C unassigned peptidases MER0081221 Pnap_3919
MA M61 unassigned family M61 unassigned peptidases MER0081215 Pnap_3368
MA M78 unassigned family M78 unassigned peptidases MER0909849 Pnap_4791
MA M90 unassigned family M90 unassigned peptidases MER0228895 Pnap_2898
MC M14 non-peptidase homologue subfamily M14B non-peptidase homologues MER0081210 Pnap_2389
MC M14 unassigned family M14 unassigned peptidases MER0469179 Pnap_1285
MD M15 non-peptidase homologue subfamily M15A non-peptidase homologues MER0060582 Pnap_4302
MD M15 unassigned subfamily M15D unassigned peptidases MER0081217 Pnap_3562
ME M16 M16.019 YMXG peptidase MER0062117 Pnap_0892
ME M16 non-peptidase homologue family M16 non-peptidase homologues MER0081196 Pnap_0893
ME M16 unassigned subfamily M16B unassigned peptidases MER0081195 Pnap_0893
MF M17 M17.003 PepA aminopeptidase MER0081209 pepA Pnap_2169
MG M24 M24.001 methionyl aminopeptidase 1 (Escherichia-type) MER0081204 Pnap_1820
MG M24 M24.001 methionyl aminopeptidase 1 (Escherichia-type) MER0081225 Pnap_4816
MG M24 unassigned subfamily M24B unassigned peptidases MER0081223 Pnap_4058
MH M20 non-peptidase homologue family M20 non-peptidase homologues MER0092034 Pnap_0353
MH M20 non-peptidase homologue family M20 non-peptidase homologues MER0843778 Pnap_4022
MH M20 unassigned family M20D unassigned peptidases MER0063489 Pnap_0651
MH M20 unassigned family M20D unassigned peptidases MER0063494 Pnap_1248
MH M20 unassigned family M20 unassigned peptidases MER0063495 Pnap_4083
MJ M19 unassigned family M19 unassigned peptidases MER0093378 Pnap_3840
MJ M38 M38.973 dihydropyrimidinase MER0859630 Pnap_4021
MM M50 unassigned subfamily M50B unassigned peptidases MER0063498
MM M50 unassigned subfamily M50B unassigned peptidases MER0063499 Pnap_3277
MO M23 M23.009 Mername-AA292 peptidase MER0081193 Pnap_0505
MO M23 non-peptidase homologue subfamily M23B non-peptidase homologues MER0081211 Pnap_2577
MO M23 unassigned subfamily M23B unassigned peptidases MER0063492 Pnap_1342
MO M23 unassigned subfamily M23B unassigned peptidases MER0081218 Pnap_3584
MS M75 unassigned family M75 unassigned peptidases MER0109796 Pnap_2561
MU M103 M103.001 TldD peptidase (Escherichia coli) MER0081216 Pnap_3399
MU M103 M103.UNW family M103 non-peptidase homologues MER0081200 Pnap_1385
PA S1 S01.477 AlgW peptidase MER0081194 Pnap_0709
PA S1 non-peptidase homologue subfamily S1D non-peptidase homologues MER1275616
PA S1 unassigned subfamily S1B unassigned peptidases MER0081224 Pnap_4439
PA S1 unassigned subfamily S1C unassigned peptidases MER0063012 Pnap_3065 Pnap_3065
PA S1 unassigned subfamily S1C unassigned peptidases MER0063011 Pnap_3107 Pnap_3107
PA S1 unassigned subfamily S1C unassigned peptidases MER0081214 Pnap_3244
PA S1 unassigned family S1 unassigned peptidases MER0217202 Pnap_4438
PB C44 C44.001 amidophosphoribosyltransferase precursor MER0118166 Pnap_1092
PB C44 C44.003 glutamate synthase (NADPH) large chain MER0458697 Pnap_0683
PB C44 non-peptidase homologue family C44 non-peptidase homologues MER0458696 Pnap_4494
PB C44 non-peptidase homologue family C44 non-peptidase homologues MER0455844 glmS Pnap_0536
PB T1 unassigned subfamily T1B unassigned peptidases MER0081203 Pnap_1783
PB T1 unassigned family T1 unassigned peptidases MER0081199 Pnap_1358
PB T3 T03.001 gamma-glutamyltransferase 1 (bacterial-type) MER0091392 Pnap_1607
PC C26 C26.955 aminodeoxychorismate synthase, subunit II MER0435947 Pnap_3652
PC C26 C26.957 GMP synthase MER0443069 guaA Pnap_2000
PC C26 C26.961 PuuD protein MER0081213 Pnap_2865
PC C26 unassigned family C26 unassigned peptidases MER0081222 Pnap_3960
PC C26 unassigned family C26 unassigned peptidases MER0447165 hisH Pnap_0699
PC C26 unassigned family C26 unassigned peptidases MER0440710 carA Pnap_1774
PC C26 unassigned family C26 unassigned peptidases MER0446620 hisH Pnap_3124
PC C56 C56.001 PfpI peptidase MER0081205 Pnap_1895
PC C56 C56.A06 DDB_G0276405 (Dictyostelium discoideum) MER0081220 Pnap_3866
PE T5 T05.001 ornithine acetyltransferase precursor MER0091391 argJ Pnap_0739
SB S8 unassigned subfamily S8A unassigned peptidases MER0081201 Pnap_1683
SB S8 unassigned subfamily S8A unassigned peptidases MER0062549 Pnap_4439
SB S8 unassigned subfamily S8A unassigned peptidases MER0247041 Pnap_2443
SC S9 S09.A43 YpfH protein (Escherichi coli) MER0210956 Pnap_3967
SC S9 unassigned subfamily S9B unassigned peptidases MER0997363 Pnap_1229
SC S9 unassigned family S9 unassigned peptidases MER0209013 Pnap_4685
SC S9 unassigned family S9 unassigned peptidases MER0210701 Pnap_0127
SC S33 S33.001 prolyl aminopeptidase MER0118815 Pnap_0733
SC S33 S33.001 prolyl aminopeptidase MER0100451 Pnap_1088
SC S33 S33.016 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (Burkholderia-type) MER0060585 bphD Pnap_4141
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0213748 Pnap_4527
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0214482 Pnap_1631
SC S33 unassigned family S33 unassigned peptidases MER1339679
SC S33 unassigned family S33 unassigned peptidases MER0210285 Pnap_2538
SC S33 unassigned family S33 unassigned peptidases MER0209612 Pnap_2687
SC S33 unassigned family S33 unassigned peptidases MER0210853 metX Pnap_4102
SE S11 S11.002 murein-DD-endopeptidase MER0081202 Pnap_1722
SE S11 unassigned family S11 unassigned peptidases MER0081192 Pnap_0197
SE S13 S13.003 D-Ala-D-Ala carboxypeptidase PBP3 MER0100819 Pnap_3847
SF S24 S24.001 repressor LexA MER0063496 lexA Pnap_1918
SF S26 S26.001 signal peptidase I MER0062383 Pnap_3063
SF S26 S26.014 TraF peptidase MER0091748 Pnap_2531
SF S26 S26.014 TraF peptidase MER0091749 Pnap_4170
SF S26 unassigned subfamily S26A unassigned peptidases MER1334261
SH S73 S73.001 gpO peptidase (Enterobacteria phage P2) MER0151003 Pnap_3290
SJ S16 S16.001 Lon-A peptidase MER0060716 Pnap_2955
SJ S16 S16.A04 DNA repair protein RadA (Escherichia coli) MER0477169 Pnap_0138
SJ S16 unassigned family S16 unassigned peptidases MER0060795 Pnap_0819
SK S14 S14.001 peptidase Clp (type 1) MER0063010 clpP Pnap_2957
SK S14 unassigned family S14 unassigned peptidases MER0062116 Pnap_0961
SK S14 unassigned family S14 unassigned peptidases MER0062118 Pnap_2253
SK S14 unassigned family S14 unassigned peptidases MER1318447
SK S41 S41.004 C-terminal processing peptidase-3 MER0061830 Pnap_0926
SK S49 non-peptidase homologue subfamily S49C non-peptidase homologues MER1072267 Pnap_2253
SK S49 unassigned subfamily S49B unassigned peptidases MER0061970 Pnap_3082
SK S49 unassigned subfamily S49C unassigned peptidases MER1072199 Pnap_0990
SS S66 S66.002 murein tetrapeptidase LD-carboxypeptidase (Escherichia-type) MER0081207 Pnap_1996
U- U32 U32.002 collagenase (Helicobacter-type) MER0062382 Pnap_3025

GENOME ANALYSIS: Comparison with 31 completely sequenced genomes from family Comamonadaceae
Family Comment
A31 significant presence (1 homologues)
C14 significant presence (2 homologues)
M19 significant presence (1 homologues)
M38 significant decrease in homologues (1 homologues)