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Literature for peptidase T01.002: archaean proteasome, beta component

Summary Alignment Tree Sequences Sequence features Distribution Structure Literature Substrates

(Topics flags: S Structure, P Specificity, I Inhibitor, E Expression, V Review. To select only the references relevant to a single topic, click the link above. See explanation.)

    2020
  1. Tarrason Risa,G., Hurtig,F., Bray,S., Hafner,A.E., Harker-Kirschneck,L., Faull,P., Davis,C., Papatziamou,D., Mutavchiev,D.R., Fan,C., Meneguello,L., Arashiro Pulschen,A., Dey,G., Culley,S., Kilkenny,M., Souza,D.P., Pellegrini,L., de Bruin,R.A.M., Henriques,R., Snijders,A.P., Saric,A., Lindas,A.C., Robinson,N.P. and Baum,B.
    The proteasome controls ESCRT-III-mediated cell division in an archaeon
    Science369, PubMed  Europe PubMed DOI
    2. 2019
  2. Majumder,P., Rudack,T., Beck,F., Danev,R., Pfeifer,G., Nagy,I. and Baumeister,W.
    Cryo-EM structures of the archaeal PAN-proteasome reveal an around-the-ring ATPase cycle
    Proc Natl Acad Sci U S A116, 534-539. PubMed  Europe PubMed DOI  S
    3. 2018
  3. Chi,C.N., Strotz,D., Riek,R. and Vogeli,B.
    NOE-derived methyl distances from a 360 kDa proteasome complex
    Chemistry24, 2270-2276. PubMed  Europe PubMed DOI  S
  4. Kato,K. and Satoh,T.
    Structural insights on the dynamics of proteasome formation
    Biophys Rev10, 597-604. PubMed  Europe PubMed DOI
    5. 2016
  5. Panfair,D. and Kusmierczyk,A.R.
    Examining proteasome assembly with recombinant archaeal proteasomes and nondenaturing PAGE: the case for a combined approach
    J Vis Exp54860-54860. PubMed  Europe PubMed DOI  E
    6. 2015
  6. Campbell,M.G., Veesler,D., Cheng,A., Potter,C.S. and Carragher,B.
    2.8 A resolution reconstruction of the Thermoplasma acidophilum 20 S proteasome using cryo-electron microscopy
    elife4, PubMed  Europe PubMed DOI  S
  7. Ma,X., Loo,J.A. and Wysocki,V.H.
    Surface induced dissociation yields substructure of Methanosarcina thermophila 20S proteasome complexes
    Int J Mass Spectrom377, 201-204. PubMed  Europe PubMed DOI
    8. 2014
  8. Barthelme,D., Chen,J.Z., Grabenstatter,J., Baker,T.A. and Sauer,R.T.
    Architecture and assembly of the archaeal Cdc48*20S proteasome
    Proc Natl Acad Sci U S A111, E1687-E1694. PubMed  Europe PubMed DOI  S
  9. Prunetti,L., Reuter,C.J., Hepowit,N.L., Wu,Y., Barrueto,L., Miranda,H.V., Kelly,K. and Maupin-Furlow,J.A.
    Structural and biochemical properties of an extreme 'salt-loving' proteasome activating nucleotidase from the archaeon Haloferax volcanii
    Extremophiles18, 283-293. PubMed  Europe PubMed DOI
  10. Sikdar,A., Satoh,T., Kawasaki,M. and Kato,K.
    Crystal structure of archaeal homolog of proteasome-assembly chaperone PbaA
    Biochem Biophys Res Commun453, 493-497. PubMed  Europe PubMed DOI
    11. 2012
  11. Barthelme,D. and Sauer,R.T.
    Identification of the Cdc48.20S proteasome as an ancient AAA+ proteolytic machine
    Science337, 843-846. PubMed  Europe PubMed DOI
  12. Berko,D., Tabachnick-Cherny,S., Shental-Bechor,D., Cascio,P., Mioletti,S., Levy,Y., Admon,A., Ziv,T., Tirosh,B., Goldberg,A.L. and Navon,A.
    The direction of protein entry into the proteasome determines the variety of products and depends on the force needed to unfold its two termini
    Mol Cell48, 601-611. PubMed  Europe PubMed DOI
  13. Forouzan,D., Ammelburg,M., Hobel,C.F., Stroh,L.J., Sessler,N., Martin,J. and Lupas,A.N.
    The archaeal proteasome is regulated by a network of AAA ATPases
    J Biol Chem287, 39254-39262. PubMed  Europe PubMed DOI
  14. Lupas,A.N., Kania,M. and Baumeister,W.
    Archaean proteasome
    [ISSN:978-0-12-407742-3]3, 3666-3671. DOI
  15. Matouschek,A. and Finley,D.
    Cell biology. An ancient portal to proteolysis
    Science337, 813-814. PubMed  Europe PubMed DOI
    16. 2011
  16. Classen,M., Breuer,S., Baumeister,W., Guckenberger,R. and Witt,S.
    Force spectroscopy of substrate molecules en route to the proteasome's active sites
    Biophys J100, 489-497. PubMed  Europe PubMed DOI
  17. Religa,T.L., Ruschak,A.M., Rosenzweig,R. and Kay,L.E.
    Site-directed methyl group labeling as an NMR probe of structure and dynamics in supramolecular protein systems: applications to the proteasome and to the ClpP protease
    J Am Chem Soc133, 9063-9068. PubMed  Europe PubMed DOI
    18. 2010
  18. Kocabiyik,S., Ozdemir,I., Zwickl,P. and Ozdogan,S.
    Molecular cloning and co-expression of Thermoplasma volcanium proteasome subunit genes
    Protein Expr Purif73, 223-230. PubMed  Europe PubMed DOI  E
  19. Religa,T.L., Sprangers,R. and Kay,L.E.
    Dynamic regulation of archaeal proteasome gate opening as studied by TROSY NMR
    Science328, 98-102. PubMed  Europe PubMed DOI
    20. 2008
  20. Felderer,K., Groves,M., Diez,J., Pohl,E. and Witt,S.
    Crystallization and preliminary X-ray analysis of the Thermoplasma acidophilum 20S proteasome in complex with protein substrates
    Acta Crystallograph Sect F Struct Biol Cryst Commun64, 899-902. PubMed  Europe PubMed DOI
  21. Rabl,J., Smith,D.M., Yu,Y., Chang,S.C., Goldberg,A.L. and Cheng,Y.
    Mechanism of gate opening in the 20S proteasome by the proteasomal ATPases
    Mol Cell30, 360-368. PubMed  Europe PubMed DOI  S
  22. Sprangers,R., Li,X., Mao,X., Rubinstein,J.L., Schimmer,A.D. and Kay,L.E.
    TROSY-based NMR evidence for a novel class of 20S proteasome inhibitors
    Biochemistry47, 6727-6734. PubMed  Europe PubMed DOI  I
    23. 2007
  23. Kirkland,P.A., Reuter,C.J. and Maupin-Furlow,J.A.
    Effect of proteasome inhibitor clasto-lactacystin-beta-lactone on the proteome of the haloarchaeon Haloferax volcanii
    Microbiology (Reading)153, 2271-2280. PubMed  Europe PubMed DOI  I
  24. Madding,L.S., Michel,J.K., Shockley,K.R., Conners,S.B., Epting,K.L., Johnson,M.R. and Kelly,R.M.
    Role of the beta1 subunit in the function and stability of the 20S proteasome in the hyperthermophilic archaeon Pyrococcus furiosus
    J Bacteriol189, 583-590. PubMed  Europe PubMed DOI
    25. 2006
  25. [YEAR:25-4-2006]Medalia,N., Sharon,M., Martinez-Arias,R., Mihalache,O., Robinson,C.V., Medalia,O. and Zwickl,P.
    Functional and structural characterization of the Methanosarcina mazei proteasome and PAN complexes
    J Struct Biol156, 84-92. PubMed  Europe PubMed DOI
  26. [YEAR:22-6-2006]Yamada,S., Niwa,J., Ishigaki,S., Takahashi,M., Ito,T., Sone,J., Doyu,M. and Sobue,G.
    Archaeal proteasomes effectively degrade aggregation-prone proteins and reduce cellular toxicities in mammalian cells
    J Biol Chem281, 23842-23851. PubMed  Europe PubMed DOI
    27. 2005
  27. [YEAR:27-5-2005]Forster,A., Masters,E.I., Whitby,F.G., Robinson,H. and Hill,C.P.
    The 1.9 A structure of a proteasome-11S activator complex and implications for proteasome-PAN/PA700 interactions
    Mol Cell18, 589-599. PubMed  Europe PubMed DOI  S
    28. 2004
  28. [YEAR:3-6-2004]Hutschenreiter,S., Tinazli,A., Model,K. and Tampe,R.
    Two-substrate association with the 20S proteasome at single-molecule level
    EMBO J23, 2488-2497. PubMed  Europe PubMed DOI
  29. Lupas,A., Kania,M. and Baumeister,W.
    Archaean proteasome
    [ISSN:0-12-079610-4]2, 2058-2061.  V
  30. Reuter,C.J., Kaczowka,S.J. and Maupin-Furlow,J.A.
    Differential regulation of the PanA and PanB proteasome-activating nucleotidase and 20S proteasomal proteins of the haloarchaeon Haloferax volcanii
    J Bacteriol186, 7763-7772. PubMed  Europe PubMed DOI
  31. Reuter,C.J. and Maupin-Furlow,J.A.
    Analysis of proteasome-dependent proteolysis in Haloferax volcanii cells, using short-lived green fluorescent proteins
    Appl Environ Microbiol70, 7530-7538. PubMed  Europe PubMed DOI  I
    32. 2003
  32. [YEAR:14-3-2003]Groll,M., Brandstetter,H., Bartunik,H., Bourenkow,G. and Huber,R.
    Investigations on the maturation and regulation of archaebacterial proteasomes
    J Mol Biol327, 75-83. PubMed  Europe PubMed DOI  S
  33. Kaczowka,S.J. and Maupin-Furlow,J.A.
    Subunit topology of two 20S proteasomes from Haloferax volcanii
    J Bacteriol185, 165-174. PubMed  Europe PubMed DOI
    34. 2002
  34. Franzetti,B., Schoehn,G., Garcia,D., Ruigrok,R.W. and Zaccai,G.
    Characterization of the proteasome from the extremely halophilic archaeon Haloarcula marismortui
    Archaea1, 53-61. PubMed  Europe PubMed
    35. 2001
  35. Barber,R.D. and Ferry,J.G.
    Archaeal proteasomes
    Methods Enzymol330, 413-424. PubMed  Europe PubMed DOI  V
  36. Frankenberg,R.J., Hsu,T.S., Yakota,H., Kim,R. and Clark,D.S.
    Chemical denaturation and elevated folding temperatures are required for wild-type activity and stability of recombinant Methanococcus jannaschii 20S proteasome
    Protein Sci10, 1887-1896. PubMed  Europe PubMed DOI
  37. Navon,A. and Goldberg,A.L.
    Proteins are unfolded on the surface of the ATPase ring before transport into the proteasome
    Mol Cell8, 1339-1349. PubMed  Europe PubMed DOI
    38. 2000
  38. Wilson,H.L., Ou,M.S., Aldrich,H.C. and Maupin-Furlow,J.
    Biochemical and physical properties of the Methanococcus jannaschii 20S proteasome and PAN, a homolog of the ATPase (Rpt) subunits of the eucaryal 26S proteasome
    J Bacteriol182, 1680-1692. PubMed  Europe PubMed DOI
    39. 1999
  39. Wilson,H.L., Aldrich,H.C. and Maupin-Furlow,J.
    Halophilic 20S proteasomes of the archaeon Haloferax volcanii: purification, characterization, and gene sequence analysis
    J Bacteriol181, 5814-5824. PubMed  Europe PubMed  I
    40. 1998
  40. [YEAR:23-1-1998]Kisselev,A.F., Akopian,T.N. and Goldberg,A.L.
    Range of sizes of peptide products generated during degradation of different proteins by archaeal proteasomes
    J Biol Chem273, 1982-1989. PubMed  Europe PubMed DOI
  41. Maupin-Furlow,J.A., Aldrich,H.C. and Ferry,J.G.
    Biochemical characterization of the 20S proteasome from the methanoarchaeon Methanosarcina thermophila
    J Bacteriol180, 1480-1487. PubMed  Europe PubMed
  42. [YEAR:20-3-1998]Ruepp,A., Eckerskorn,C., Bogyo,M. and Baumeister,W.
    Proteasome function is dispensable under normal but not under heat shock conditions in Thermoplasma acidophilum
    FEBS Lett425, 87-90. PubMed  Europe PubMed DOI  I
    43. 1997
  43. Bauer,M.W., Bauer,S.H. and Kelly,R.M.
    Purification and characterization of a proteasome from the hyperthermophilic archaeon Pyrococcus furiosus
    Appl Environ Microbiol63, 1160-1164. PubMed  Europe PubMed
  44. Escherich,A., Ditzel,L., Musiol,H.J., Groll,M., Huber,R. and Moroder,L.
    Synthesis, kinetic characterization and X-ray analysis of peptide aldehydes as inhibitors of the 20S proteasomes from Thermoplasma acidophilum and Saccharomyces cerevisiae
    Biol Chem378, 893-898. PubMed  Europe PubMed  I
  45. Goldberg,A.L., Akopian,T.N., Kisselev,A.F. and Lee,D.H.
    Protein degradation by the proteasome and dissection of its in vivo importance with synthetic inhibitors
    Mol Biol Rep24, 69-75. PubMed  Europe PubMed DOI
    46. 1996
  46. Seemuller,E., Lupas,A. and Baumeister,W.
    Autocatalytic processing of the 20S proteasome
    Nature382, 468-471. PubMed  Europe PubMed DOI
    47. 1995
  47. Koster,A.J., Walz,J., Lupas,A. and Baumeister,W.
    Structural features of archaebacterial and eukaryotic proteasomes
    Mol Biol Rep21, 11-20. PubMed  Europe PubMed DOI
  48. [YEAR:12-5-1995]Leibovitz,D., Koch,Y., Fridkin,M., Pitzer,F., Zwickl,P., Dantes,A., Baumeister,W. and Amsterdam,A.
    Archaebacterial and eukaryotic proteasomes prefer different sites in cleaving gonadotropin-releasing hormone
    J Biol Chem270, 11029-11032. PubMed  Europe PubMed DOI  P
  49. Lowe,J., Stock,D., Jap,B., Zwickl,P., Baumeister,W. and Huber,R.
    Crystal structure of the 20S proteasome from the archaeon T. acidophilum at 3.4 A resolution
    Science268, 533-539. PubMed  Europe PubMed  S  I
  50. Maupin-Furlow,J.A. and Ferry,J.G.
    A proteasome from the methanogenic archaeon Methanosarcina thermophila
    J Biol Chem270, 28617-28622. PubMed  Europe PubMed DOI
  51. Seemuller,E., Lupas,A., Stock,D., Lowe,J., Huber,R. and Baumeister,W.
    Proteasome from Thermoplasma acidophilum: a threonine protease
    Science268, 579-582. PubMed  Europe PubMed
    52. 1994
  52. Grziwa,A., Maack,S., Puhler,G., Wiegand,G., Baumeister,W. and Jaenicke,R.
    Dissociation and reconstitution of the Thermoplasma proteasome
    Eur J Biochem223, 1061-1067. PubMed  Europe PubMed DOI
  53. Puhler,G., Pitzer,F., Zwickl,P. and Baumeister,W.
    Proteasomes - multisubunit proteinases common to Thermoplasma and eukaryotes
    Syst Appl Microbiol16, 734-741.
  54. Zwickl,P., Kleinz,J. and Baumeister,W.
    Critical elements in proteasome assembly
    Nat Struct Biol1, 765-770. PubMed  Europe PubMed
    55. 1993
  55. Jap,B., Puhler,G., Lucke,H., Typke,D., Lowe,J., Stock,D., Huber,R. and Baumeister,W.
    Preliminary X-ray crystallographic study of the proteasome from Thermoplasma acidophilum
    J Mol Biol234, 881-884. PubMed  Europe PubMed DOI  S
  56. Wenzel,T. and Baumeister,W.
    Thermoplasma acidophilum proteasomes degrade partially unfolded and ubiquitin-associated proteins
    FEBS Lett326, 215-218. PubMed  Europe PubMed DOI
    57. 1992
  57. Dahlmann,B., Kuehn,L., Grziwa,A., Zwickl,P. and Baumeister,W.
    Biochemical properties of the proteasome from Thermoplasma acidophilum
    Eur J Biochem208, 789-797. PubMed  Europe PubMed DOI
  58. Puhler,G., Weinkauf,S., Bachmann,L., Muller,S., Engel,A., Hegerl,R. and Baumeister,W.
    Subunit stoichiometry and three-dimensional arrangement in proteasomes from Thermoplasma acidophilum
    EMBO J11, 1607-1616. PubMed  Europe PubMed  S
  59. Zwickl,P., Grziwa,A., Puhler,G., Dahlmann,B., Lottspeich,F. and Baumeister,W.
    Primary structure of the Thermoplasma proteasome and its implications for the structure, function, and evolution of the multicatalytic proteinase
    Biochemistry31, 964-972. PubMed  Europe PubMed
  60. Zwickl,P., Lottspeich,F. and Baumeister,W.
    Expression of functional Thermoplasma acidophilum proteasomes in Escherichia coli
    FEBS Lett312, 157-160. PubMed  Europe PubMed DOI
    61. 1991
  61. Grziwa,A., Baumeister,W., Dahlmann,B. and Kopp,F.
    Localization of subunits in proteasomes from Thermoplasma acidophilum by immunoelectron microscopy
    FEBS Lett290, 186-190. PubMed  Europe PubMed DOI

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