Literature for peptidase T01.002: archaean proteasome, beta component

Summary Alignment Tree Sequences Sequence features Distribution Structure Literature Substrates

(Topics flags: S Structure, P Specificity, I Inhibitor, E Expression, V Review. To select only the references relevant to a single topic, click the link above. See explanation.)

2020

Tarrason Risa,G., Hurtig,F., Bray,S., Hafner,A.E., Harker-Kirschneck,L., Faull,P., Davis,C., Papatziamou,D., Mutavchiev,D.R., Fan,C., Meneguello,L., Arashiro Pulschen,A., Dey,G., Culley,S., Kilkenny,M., Souza,D.P., Pellegrini,L., de Bruin,R.A.M., Henriques,R., Snijders,A.P., Saric,A., Lindas,A.C., Robinson,N.P. and Baum,B. The proteasome controls ESCRT-III-mediated cell division in an archaeon Science (2020) 369 PubMed Europe PubMed DOI PMC EPMC

2019

Majumder,P., Rudack,T., Beck,F., Danev,R., Pfeifer,G., Nagy,I. and Baumeister,W. Cryo-EM structures of the archaeal PAN-proteasome reveal an around-the-ring ATPase cycle Proc Natl Acad Sci U S A (2019) 116, 534-539. PubMed Europe PubMed DOI S

2018

Chi,C.N., Strotz,D., Riek,R. and Vogeli,B. NOE-derived methyl distances from a 360 kDa proteasome complex Chemistry (2018) 24, 2270-2276. PubMed Europe PubMed DOI S
Kato,K. and Satoh,T. Structural insights on the dynamics of proteasome formation Biophys Rev (2018) 10, 597-604. PubMed Europe PubMed DOI

2016

Panfair,D. and Kusmierczyk,A.R. Examining proteasome assembly with recombinant archaeal proteasomes and nondenaturing PAGE: the case for a combined approach J Vis Exp (2016) , 54860-54860. PubMed Europe PubMed DOI E

2015

Campbell,M.G., Veesler,D., Cheng,A., Potter,C.S. and Carragher,B. 2.8 A resolution reconstruction of the Thermoplasma acidophilum 20 S proteasome using cryo-electron microscopy elife (2015) 4 PubMed Europe PubMed DOI S
Ma,X., Loo,J.A. and Wysocki,V.H. Surface induced dissociation yields substructure of Methanosarcina thermophila 20S proteasome complexes Int J Mass Spectrom (2015) 377, 201-204. PubMed Europe PubMed DOI PMC EPMC

2014

Barthelme,D., Chen,J.Z., Grabenstatter,J., Baker,T.A. and Sauer,R.T. Architecture and assembly of the archaeal Cdc48*20S proteasome Proc Natl Acad Sci U S A (2014) 111, E1687-E1694. PubMed Europe PubMed DOI S
Prunetti,L., Reuter,C.J., Hepowit,N.L., Wu,Y., Barrueto,L., Miranda,H.V., Kelly,K. and Maupin-Furlow,J.A. Structural and biochemical properties of an extreme 'salt-loving' proteasome activating nucleotidase from the archaeon Haloferax volcanii Extremophiles (2014) 18, 283-293. PubMed Europe PubMed DOI
Sikdar,A., Satoh,T., Kawasaki,M. and Kato,K. Crystal structure of archaeal homolog of proteasome-assembly chaperone PbaA Biochem Biophys Res Commun (2014) 453, 493-497. PubMed Europe PubMed DOI

2012

Barthelme,D. and Sauer,R.T. Identification of the Cdc48.20S proteasome as an ancient AAA+ proteolytic machine Science (2012) 337, 843-846. PubMed Europe PubMed DOI
Berko,D., Tabachnick-Cherny,S., Shental-Bechor,D., Cascio,P., Mioletti,S., Levy,Y., Admon,A., Ziv,T., Tirosh,B., Goldberg,A.L. and Navon,A. The direction of protein entry into the proteasome determines the variety of products and depends on the force needed to unfold its two termini Mol Cell (2012) 48, 601-611. PubMed Europe PubMed DOI
Forouzan,D., Ammelburg,M., Hobel,C.F., Stroh,L.J., Sessler,N., Martin,J. and Lupas,A.N. The archaeal proteasome is regulated by a network of AAA ATPases J Biol Chem (2012) 287, 39254-39262. PubMed Europe PubMed DOI
Lupas,A.N., Kania,M. and Baumeister,W. Archaean proteasome [ISSN:978-0-12-407742-3] (2012) 3, 3666-3671. DOI
Matouschek,A. and Finley,D. Cell biology. An ancient portal to proteolysis Science (2012) 337, 813-814. PubMed Europe PubMed DOI

2011

Classen,M., Breuer,S., Baumeister,W., Guckenberger,R. and Witt,S. Force spectroscopy of substrate molecules en route to the proteasome's active sites Biophys J (2011) 100, 489-497. PubMed Europe PubMed DOI
Religa,T.L., Ruschak,A.M., Rosenzweig,R. and Kay,L.E. Site-directed methyl group labeling as an NMR probe of structure and dynamics in supramolecular protein systems: applications to the proteasome and to the ClpP protease J Am Chem Soc (2011) 133, 9063-9068. PubMed Europe PubMed DOI

2010

Kocabiyik,S., Ozdemir,I., Zwickl,P. and Ozdogan,S. Molecular cloning and co-expression of Thermoplasma volcanium proteasome subunit genes Protein Expr Purif (2010) 73, 223-230. PubMed Europe PubMed DOI E
Religa,T.L., Sprangers,R. and Kay,L.E. Dynamic regulation of archaeal proteasome gate opening as studied by TROSY NMR Science (2010) 328, 98-102. PubMed Europe PubMed DOI

2008

Felderer,K., Groves,M., Diez,J., Pohl,E. and Witt,S. Crystallization and preliminary X-ray analysis of the Thermoplasma acidophilum 20S proteasome in complex with protein substrates Acta Crystallograph Sect F Struct Biol Cryst Commun (2008) 64, 899-902. PubMed Europe PubMed DOI PMC EPMC
Rabl,J., Smith,D.M., Yu,Y., Chang,S.C., Goldberg,A.L. and Cheng,Y. Mechanism of gate opening in the 20S proteasome by the proteasomal ATPases Mol Cell (2008) 30, 360-368. PubMed Europe PubMed DOI S
Sprangers,R., Li,X., Mao,X., Rubinstein,J.L., Schimmer,A.D. and Kay,L.E. TROSY-based NMR evidence for a novel class of 20S proteasome inhibitors Biochemistry (2008) 47, 6727-6734. PubMed Europe PubMed DOI I

2007

Kirkland,P.A., Reuter,C.J. and Maupin-Furlow,J.A. Effect of proteasome inhibitor clasto-lactacystin-beta-lactone on the proteome of the haloarchaeon Haloferax volcanii Microbiology (Reading) (2007) 153, 2271-2280. PubMed Europe PubMed DOI I
Madding,L.S., Michel,J.K., Shockley,K.R., Conners,S.B., Epting,K.L., Johnson,M.R. and Kelly,R.M. Role of the beta1 subunit in the function and stability of the 20S proteasome in the hyperthermophilic archaeon Pyrococcus furiosus J Bacteriol (2007) 189, 583-590. PubMed Europe PubMed DOI PMC EPMC

2006

[YEAR:25-4-2006]Medalia,N., Sharon,M., Martinez-Arias,R., Mihalache,O., Robinson,C.V., Medalia,O. and Zwickl,P. Functional and structural characterization of the Methanosarcina mazei proteasome and PAN complexes J Struct Biol (25-4-2006) 156, 84-92. PubMed Europe PubMed DOI
[YEAR:22-6-2006]Yamada,S., Niwa,J., Ishigaki,S., Takahashi,M., Ito,T., Sone,J., Doyu,M. and Sobue,G. Archaeal proteasomes effectively degrade aggregation-prone proteins and reduce cellular toxicities in mammalian cells J Biol Chem (22-6-2006) 281, 23842-23851. PubMed Europe PubMed DOI

2005

[YEAR:27-5-2005]Forster,A., Masters,E.I., Whitby,F.G., Robinson,H. and Hill,C.P. The 1.9 A structure of a proteasome-11S activator complex and implications for proteasome-PAN/PA700 interactions Mol Cell (27-5-2005) 18, 589-599. PubMed Europe PubMed DOI S

2004

[YEAR:3-6-2004]Hutschenreiter,S., Tinazli,A., Model,K. and Tampe,R. Two-substrate association with the 20S proteasome at single-molecule level EMBO J (3-6-2004) 23, 2488-2497. PubMed Europe PubMed DOI PMC EPMC
Lupas,A., Kania,M. and Baumeister,W. Archaean proteasome [ISSN:0-12-079610-4] (2004) 2, 2058-2061. V
Reuter,C.J., Kaczowka,S.J. and Maupin-Furlow,J.A. Differential regulation of the PanA and PanB proteasome-activating nucleotidase and 20S proteasomal proteins of the haloarchaeon Haloferax volcanii J Bacteriol (2004) 186, 7763-7772. PubMed Europe PubMed DOI PMC EPMC
Reuter,C.J. and Maupin-Furlow,J.A. Analysis of proteasome-dependent proteolysis in Haloferax volcanii cells, using short-lived green fluorescent proteins Appl Environ Microbiol (2004) 70, 7530-7538. PubMed Europe PubMed DOI PMC EPMC I

2003

[YEAR:14-3-2003]Groll,M., Brandstetter,H., Bartunik,H., Bourenkow,G. and Huber,R. Investigations on the maturation and regulation of archaebacterial proteasomes J Mol Biol (14-3-2003) 327, 75-83. PubMed Europe PubMed DOI S
Kaczowka,S.J. and Maupin-Furlow,J.A. Subunit topology of two 20S proteasomes from Haloferax volcanii J Bacteriol (2003) 185, 165-174. PubMed Europe PubMed DOI PMC EPMC

2002

Franzetti,B., Schoehn,G., Garcia,D., Ruigrok,R.W. and Zaccai,G. Characterization of the proteasome from the extremely halophilic archaeon Haloarcula marismortui Archaea (2002) 1, 53-61. PubMed Europe PubMed PMC EPMC

2001

Barber,R.D. and Ferry,J.G. Archaeal proteasomes Methods Enzymol (2001) 330, 413-424. PubMed Europe PubMed DOI V
Frankenberg,R.J., Hsu,T.S., Yakota,H., Kim,R. and Clark,D.S. Chemical denaturation and elevated folding temperatures are required for wild-type activity and stability of recombinant Methanococcus jannaschii 20S proteasome Protein Sci (2001) 10, 1887-1896. PubMed Europe PubMed DOI PMC EPMC
Navon,A. and Goldberg,A.L. Proteins are unfolded on the surface of the ATPase ring before transport into the proteasome Mol Cell (2001) 8, 1339-1349. PubMed Europe PubMed DOI

2000

Wilson,H.L., Ou,M.S., Aldrich,H.C. and Maupin-Furlow,J. Biochemical and physical properties of the Methanococcus jannaschii 20S proteasome and PAN, a homolog of the ATPase (Rpt) subunits of the eucaryal 26S proteasome J Bacteriol (2000) 182, 1680-1692. PubMed Europe PubMed DOI PMC EPMC

1999

Wilson,H.L., Aldrich,H.C. and Maupin-Furlow,J. Halophilic 20S proteasomes of the archaeon Haloferax volcanii: purification, characterization, and gene sequence analysis J Bacteriol (1999) 181, 5814-5824. PubMed Europe PubMed PMC EPMC I

1998

[YEAR:23-1-1998]Kisselev,A.F., Akopian,T.N. and Goldberg,A.L. Range of sizes of peptide products generated during degradation of different proteins by archaeal proteasomes J Biol Chem (23-1-1998) 273, 1982-1989. PubMed Europe PubMed DOI
Maupin-Furlow,J.A., Aldrich,H.C. and Ferry,J.G. Biochemical characterization of the 20S proteasome from the methanoarchaeon Methanosarcina thermophila J Bacteriol (1998) 180, 1480-1487. PubMed Europe PubMed PMC EPMC
[YEAR:20-3-1998]Ruepp,A., Eckerskorn,C., Bogyo,M. and Baumeister,W. Proteasome function is dispensable under normal but not under heat shock conditions in Thermoplasma acidophilum FEBS Lett (20-3-1998) 425, 87-90. PubMed Europe PubMed DOI I

1997

Bauer,M.W., Bauer,S.H. and Kelly,R.M. Purification and characterization of a proteasome from the hyperthermophilic archaeon Pyrococcus furiosus Appl Environ Microbiol (1997) 63, 1160-1164. PubMed Europe PubMed PMC EPMC
Escherich,A., Ditzel,L., Musiol,H.J., Groll,M., Huber,R. and Moroder,L. Synthesis, kinetic characterization and X-ray analysis of peptide aldehydes as inhibitors of the 20S proteasomes from Thermoplasma acidophilum and Saccharomyces cerevisiae Biol Chem (1997) 378, 893-898. PubMed Europe PubMed I
Goldberg,A.L., Akopian,T.N., Kisselev,A.F. and Lee,D.H. Protein degradation by the proteasome and dissection of its in vivo importance with synthetic inhibitors Mol Biol Rep (1997) 24, 69-75. PubMed Europe PubMed DOI

1996

Seemuller,E., Lupas,A. and Baumeister,W. Autocatalytic processing of the 20S proteasome Nature (1996) 382, 468-471. PubMed Europe PubMed DOI

1995

Koster,A.J., Walz,J., Lupas,A. and Baumeister,W. Structural features of archaebacterial and eukaryotic proteasomes Mol Biol Rep (1995) 21, 11-20. PubMed Europe PubMed DOI
[YEAR:12-5-1995]Leibovitz,D., Koch,Y., Fridkin,M., Pitzer,F., Zwickl,P., Dantes,A., Baumeister,W. and Amsterdam,A. Archaebacterial and eukaryotic proteasomes prefer different sites in cleaving gonadotropin-releasing hormone J Biol Chem (12-5-1995) 270, 11029-11032. PubMed Europe PubMed DOI P
Lowe,J., Stock,D., Jap,B., Zwickl,P., Baumeister,W. and Huber,R. Crystal structure of the 20S proteasome from the archaeon T. acidophilum at 3.4 A resolution Science (1995) 268, 533-539. PubMed Europe PubMed S I
Maupin-Furlow,J.A. and Ferry,J.G. A proteasome from the methanogenic archaeon Methanosarcina thermophila J Biol Chem (1995) 270, 28617-28622. PubMed Europe PubMed DOI
Seemuller,E., Lupas,A., Stock,D., Lowe,J., Huber,R. and Baumeister,W. Proteasome from Thermoplasma acidophilum: a threonine protease Science (1995) 268, 579-582. PubMed Europe PubMed

1994

Grziwa,A., Maack,S., Puhler,G., Wiegand,G., Baumeister,W. and Jaenicke,R. Dissociation and reconstitution of the Thermoplasma proteasome Eur J Biochem (1994) 223, 1061-1067. PubMed Europe PubMed DOI
Puhler,G., Pitzer,F., Zwickl,P. and Baumeister,W. Proteasomes - multisubunit proteinases common to Thermoplasma and eukaryotes Syst Appl Microbiol (1994) 16, 734-741.
Zwickl,P., Kleinz,J. and Baumeister,W. Critical elements in proteasome assembly Nat Struct Biol (1994) 1, 765-770. PubMed Europe PubMed

1993

Jap,B., Puhler,G., Lucke,H., Typke,D., Lowe,J., Stock,D., Huber,R. and Baumeister,W. Preliminary X-ray crystallographic study of the proteasome from Thermoplasma acidophilum J Mol Biol (1993) 234, 881-884. PubMed Europe PubMed DOI S
Wenzel,T. and Baumeister,W. Thermoplasma acidophilum proteasomes degrade partially unfolded and ubiquitin-associated proteins FEBS Lett (1993) 326, 215-218. PubMed Europe PubMed DOI

1992

Dahlmann,B., Kuehn,L., Grziwa,A., Zwickl,P. and Baumeister,W. Biochemical properties of the proteasome from Thermoplasma acidophilum Eur J Biochem (1992) 208, 789-797. PubMed Europe PubMed DOI
Puhler,G., Weinkauf,S., Bachmann,L., Muller,S., Engel,A., Hegerl,R. and Baumeister,W. Subunit stoichiometry and three-dimensional arrangement in proteasomes from Thermoplasma acidophilum EMBO J (1992) 11, 1607-1616. PubMed Europe PubMed PMC EPMC S
Zwickl,P., Lottspeich,F. and Baumeister,W. Expression of functional Thermoplasma acidophilum proteasomes in Escherichia coli FEBS Lett (1992) 312, 157-160. PubMed Europe PubMed DOI
Zwickl,P., Grziwa,A., Puhler,G., Dahlmann,B., Lottspeich,F. and Baumeister,W. Primary structure of the Thermoplasma proteasome and its implications for the structure, function, and evolution of the multicatalytic proteinase Biochemistry (1992) 31, 964-972. PubMed Europe PubMed

1991

Grziwa,A., Baumeister,W., Dahlmann,B. and Kopp,F. Localization of subunits in proteasomes from Thermoplasma acidophilum by immunoelectron microscopy FEBS Lett (1991) 290, 186-190. PubMed Europe PubMed DOI