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Literature for peptidase T01.002: archaean proteasome, beta component

Summary Alignment Tree Sequences Sequence features Distribution Structure Literature Substrates Inhibitors

(Topics flags: S Structure, P Specificity, I Inhibitor, E Expression, V Review. To select only the references relevant to a single topic, click the link above. See explanation.)

    2020
  1. Tarrason Risa,G., Hurtig,F., Bray,S., Hafner,A.E., Harker-Kirschneck,L., Faull,P., Davis,C., Papatziamou,D., Mutavchiev,D.R., Fan,C., Meneguello,L., Arashiro Pulschen,A., Dey,G., Culley,S., Kilkenny,M., Souza,D.P., Pellegrini,L., de Bruin,R.A.M., Henriques,R., Snijders,A.P., Saric,A., Lindas,A.C., Robinson,N.P. and Baum,B.
    The proteasome controls ESCRT-III-mediated cell division in an archaeon
    Science (2020) 369 PubMed  Europe PubMed DOI  PMC  EPMC
    2. 2019
  2. Majumder,P., Rudack,T., Beck,F., Danev,R., Pfeifer,G., Nagy,I. and Baumeister,W.
    Cryo-EM structures of the archaeal PAN-proteasome reveal an around-the-ring ATPase cycle
    Proc Natl Acad Sci U S A (2019) 116, 534-539. PubMed  Europe PubMed DOI  S
    3. 2018
  3. Chi,C.N., Strotz,D., Riek,R. and Vogeli,B.
    NOE-derived methyl distances from a 360 kDa proteasome complex
    Chemistry (2018) 24, 2270-2276. PubMed  Europe PubMed DOI  S
  4. Kato,K. and Satoh,T.
    Structural insights on the dynamics of proteasome formation
    Biophys Rev (2018) 10, 597-604. PubMed  Europe PubMed DOI
    5. 2016
  5. Panfair,D. and Kusmierczyk,A.R.
    Examining proteasome assembly with recombinant archaeal proteasomes and nondenaturing PAGE: the case for a combined approach
    J Vis Exp (2016) , 54860-54860. PubMed  Europe PubMed DOI  E
    6. 2015
  6. Campbell,M.G., Veesler,D., Cheng,A., Potter,C.S. and Carragher,B.
    2.8 A resolution reconstruction of the Thermoplasma acidophilum 20 S proteasome using cryo-electron microscopy
    elife (2015) 4 PubMed  Europe PubMed DOI  S
  7. Ma,X., Loo,J.A. and Wysocki,V.H.
    Surface induced dissociation yields substructure of Methanosarcina thermophila 20S proteasome complexes
    Int J Mass Spectrom (2015) 377, 201-204. PubMed  Europe PubMed DOI  PMC  EPMC
    8. 2014
  8. Barthelme,D., Chen,J.Z., Grabenstatter,J., Baker,T.A. and Sauer,R.T.
    Architecture and assembly of the archaeal Cdc48*20S proteasome
    Proc Natl Acad Sci U S A (2014) 111, E1687-E1694. PubMed  Europe PubMed DOI  S
  9. Prunetti,L., Reuter,C.J., Hepowit,N.L., Wu,Y., Barrueto,L., Miranda,H.V., Kelly,K. and Maupin-Furlow,J.A.
    Structural and biochemical properties of an extreme 'salt-loving' proteasome activating nucleotidase from the archaeon Haloferax volcanii
    Extremophiles (2014) 18, 283-293. PubMed  Europe PubMed DOI
  10. Sikdar,A., Satoh,T., Kawasaki,M. and Kato,K.
    Crystal structure of archaeal homolog of proteasome-assembly chaperone PbaA
    Biochem Biophys Res Commun (2014) 453, 493-497. PubMed  Europe PubMed DOI
    11. 2012
  11. Barthelme,D. and Sauer,R.T.
    Identification of the Cdc48.20S proteasome as an ancient AAA+ proteolytic machine
    Science (2012) 337, 843-846. PubMed  Europe PubMed DOI
  12. Berko,D., Tabachnick-Cherny,S., Shental-Bechor,D., Cascio,P., Mioletti,S., Levy,Y., Admon,A., Ziv,T., Tirosh,B., Goldberg,A.L. and Navon,A.
    The direction of protein entry into the proteasome determines the variety of products and depends on the force needed to unfold its two termini
    Mol Cell (2012) 48, 601-611. PubMed  Europe PubMed DOI
  13. Forouzan,D., Ammelburg,M., Hobel,C.F., Stroh,L.J., Sessler,N., Martin,J. and Lupas,A.N.
    The archaeal proteasome is regulated by a network of AAA ATPases
    J Biol Chem (2012) 287, 39254-39262. PubMed  Europe PubMed DOI
  14. Lupas,A.N., Kania,M. and Baumeister,W.
    Archaean proteasome
    [ISSN:978-0-12-407742-3] (2012) 3, 3666-3671. DOI
  15. Matouschek,A. and Finley,D.
    Cell biology. An ancient portal to proteolysis
    Science (2012) 337, 813-814. PubMed  Europe PubMed DOI
    16. 2011
  16. Classen,M., Breuer,S., Baumeister,W., Guckenberger,R. and Witt,S.
    Force spectroscopy of substrate molecules en route to the proteasome's active sites
    Biophys J (2011) 100, 489-497. PubMed  Europe PubMed DOI
  17. Religa,T.L., Ruschak,A.M., Rosenzweig,R. and Kay,L.E.
    Site-directed methyl group labeling as an NMR probe of structure and dynamics in supramolecular protein systems: applications to the proteasome and to the ClpP protease
    J Am Chem Soc (2011) 133, 9063-9068. PubMed  Europe PubMed DOI
    18. 2010
  18. Kocabiyik,S., Ozdemir,I., Zwickl,P. and Ozdogan,S.
    Molecular cloning and co-expression of Thermoplasma volcanium proteasome subunit genes
    Protein Expr Purif (2010) 73, 223-230. PubMed  Europe PubMed DOI  E
  19. Religa,T.L., Sprangers,R. and Kay,L.E.
    Dynamic regulation of archaeal proteasome gate opening as studied by TROSY NMR
    Science (2010) 328, 98-102. PubMed  Europe PubMed DOI
    20. 2008
  20. Felderer,K., Groves,M., Diez,J., Pohl,E. and Witt,S.
    Crystallization and preliminary X-ray analysis of the Thermoplasma acidophilum 20S proteasome in complex with protein substrates
    Acta Crystallograph Sect F Struct Biol Cryst Commun (2008) 64, 899-902. PubMed  Europe PubMed DOI  PMC  EPMC
  21. Rabl,J., Smith,D.M., Yu,Y., Chang,S.C., Goldberg,A.L. and Cheng,Y.
    Mechanism of gate opening in the 20S proteasome by the proteasomal ATPases
    Mol Cell (2008) 30, 360-368. PubMed  Europe PubMed DOI  S
  22. Sprangers,R., Li,X., Mao,X., Rubinstein,J.L., Schimmer,A.D. and Kay,L.E.
    TROSY-based NMR evidence for a novel class of 20S proteasome inhibitors
    Biochemistry (2008) 47, 6727-6734. PubMed  Europe PubMed DOI  I
    23. 2007
  23. Kirkland,P.A., Reuter,C.J. and Maupin-Furlow,J.A.
    Effect of proteasome inhibitor clasto-lactacystin-beta-lactone on the proteome of the haloarchaeon Haloferax volcanii
    Microbiology (Reading) (2007) 153, 2271-2280. PubMed  Europe PubMed DOI  I
  24. Madding,L.S., Michel,J.K., Shockley,K.R., Conners,S.B., Epting,K.L., Johnson,M.R. and Kelly,R.M.
    Role of the beta1 subunit in the function and stability of the 20S proteasome in the hyperthermophilic archaeon Pyrococcus furiosus
    J Bacteriol (2007) 189, 583-590. PubMed  Europe PubMed DOI  PMC  EPMC
    25. 2006
  25. [YEAR:25-4-2006]Medalia,N., Sharon,M., Martinez-Arias,R., Mihalache,O., Robinson,C.V., Medalia,O. and Zwickl,P.
    Functional and structural characterization of the Methanosarcina mazei proteasome and PAN complexes
    J Struct Biol (25-4-2006) 156, 84-92. PubMed  Europe PubMed DOI
  26. [YEAR:22-6-2006]Yamada,S., Niwa,J., Ishigaki,S., Takahashi,M., Ito,T., Sone,J., Doyu,M. and Sobue,G.
    Archaeal proteasomes effectively degrade aggregation-prone proteins and reduce cellular toxicities in mammalian cells
    J Biol Chem (22-6-2006) 281, 23842-23851. PubMed  Europe PubMed DOI
    27. 2005
  27. [YEAR:27-5-2005]Forster,A., Masters,E.I., Whitby,F.G., Robinson,H. and Hill,C.P.
    The 1.9 A structure of a proteasome-11S activator complex and implications for proteasome-PAN/PA700 interactions
    Mol Cell (27-5-2005) 18, 589-599. PubMed  Europe PubMed DOI  S
    28. 2004
  28. [YEAR:3-6-2004]Hutschenreiter,S., Tinazli,A., Model,K. and Tampe,R.
    Two-substrate association with the 20S proteasome at single-molecule level
    EMBO J (3-6-2004) 23, 2488-2497. PubMed  Europe PubMed DOI  PMC  EPMC
  29. Lupas,A., Kania,M. and Baumeister,W.
    Archaean proteasome
    [ISSN:0-12-079610-4] (2004) 2, 2058-2061.  V
  30. Reuter,C.J., Kaczowka,S.J. and Maupin-Furlow,J.A.
    Differential regulation of the PanA and PanB proteasome-activating nucleotidase and 20S proteasomal proteins of the haloarchaeon Haloferax volcanii
    J Bacteriol (2004) 186, 7763-7772. PubMed  Europe PubMed DOI  PMC  EPMC
  31. Reuter,C.J. and Maupin-Furlow,J.A.
    Analysis of proteasome-dependent proteolysis in Haloferax volcanii cells, using short-lived green fluorescent proteins
    Appl Environ Microbiol (2004) 70, 7530-7538. PubMed  Europe PubMed DOI  PMC  EPMC  I
    32. 2003
  32. [YEAR:14-3-2003]Groll,M., Brandstetter,H., Bartunik,H., Bourenkow,G. and Huber,R.
    Investigations on the maturation and regulation of archaebacterial proteasomes
    J Mol Biol (14-3-2003) 327, 75-83. PubMed  Europe PubMed DOI  S
  33. Kaczowka,S.J. and Maupin-Furlow,J.A.
    Subunit topology of two 20S proteasomes from Haloferax volcanii
    J Bacteriol (2003) 185, 165-174. PubMed  Europe PubMed DOI  PMC  EPMC
    34. 2002
  34. Franzetti,B., Schoehn,G., Garcia,D., Ruigrok,R.W. and Zaccai,G.
    Characterization of the proteasome from the extremely halophilic archaeon Haloarcula marismortui
    Archaea (2002) 1, 53-61. PubMed  Europe PubMed  PMC  EPMC
    35. 2001
  35. Barber,R.D. and Ferry,J.G.
    Archaeal proteasomes
    Methods Enzymol (2001) 330, 413-424. PubMed  Europe PubMed DOI  V
  36. Frankenberg,R.J., Hsu,T.S., Yakota,H., Kim,R. and Clark,D.S.
    Chemical denaturation and elevated folding temperatures are required for wild-type activity and stability of recombinant Methanococcus jannaschii 20S proteasome
    Protein Sci (2001) 10, 1887-1896. PubMed  Europe PubMed DOI  PMC  EPMC
  37. Navon,A. and Goldberg,A.L.
    Proteins are unfolded on the surface of the ATPase ring before transport into the proteasome
    Mol Cell (2001) 8, 1339-1349. PubMed  Europe PubMed DOI
    38. 2000
  38. Wilson,H.L., Ou,M.S., Aldrich,H.C. and Maupin-Furlow,J.
    Biochemical and physical properties of the Methanococcus jannaschii 20S proteasome and PAN, a homolog of the ATPase (Rpt) subunits of the eucaryal 26S proteasome
    J Bacteriol (2000) 182, 1680-1692. PubMed  Europe PubMed DOI  PMC  EPMC
    39. 1999
  39. Wilson,H.L., Aldrich,H.C. and Maupin-Furlow,J.
    Halophilic 20S proteasomes of the archaeon Haloferax volcanii: purification, characterization, and gene sequence analysis
    J Bacteriol (1999) 181, 5814-5824. PubMed  Europe PubMed  PMC  EPMC  I
    40. 1998
  40. [YEAR:23-1-1998]Kisselev,A.F., Akopian,T.N. and Goldberg,A.L.
    Range of sizes of peptide products generated during degradation of different proteins by archaeal proteasomes
    J Biol Chem (23-1-1998) 273, 1982-1989. PubMed  Europe PubMed DOI
  41. Maupin-Furlow,J.A., Aldrich,H.C. and Ferry,J.G.
    Biochemical characterization of the 20S proteasome from the methanoarchaeon Methanosarcina thermophila
    J Bacteriol (1998) 180, 1480-1487. PubMed  Europe PubMed  PMC  EPMC
  42. [YEAR:20-3-1998]Ruepp,A., Eckerskorn,C., Bogyo,M. and Baumeister,W.
    Proteasome function is dispensable under normal but not under heat shock conditions in Thermoplasma acidophilum
    FEBS Lett (20-3-1998) 425, 87-90. PubMed  Europe PubMed DOI  I
    43. 1997
  43. Bauer,M.W., Bauer,S.H. and Kelly,R.M.
    Purification and characterization of a proteasome from the hyperthermophilic archaeon Pyrococcus furiosus
    Appl Environ Microbiol (1997) 63, 1160-1164. PubMed  Europe PubMed  PMC  EPMC
  44. Escherich,A., Ditzel,L., Musiol,H.J., Groll,M., Huber,R. and Moroder,L.
    Synthesis, kinetic characterization and X-ray analysis of peptide aldehydes as inhibitors of the 20S proteasomes from Thermoplasma acidophilum and Saccharomyces cerevisiae
    Biol Chem (1997) 378, 893-898. PubMed  Europe PubMed  I
  45. Goldberg,A.L., Akopian,T.N., Kisselev,A.F. and Lee,D.H.
    Protein degradation by the proteasome and dissection of its in vivo importance with synthetic inhibitors
    Mol Biol Rep (1997) 24, 69-75. PubMed  Europe PubMed DOI
    46. 1996
  46. Seemuller,E., Lupas,A. and Baumeister,W.
    Autocatalytic processing of the 20S proteasome
    Nature (1996) 382, 468-471. PubMed  Europe PubMed DOI
    47. 1995
  47. Koster,A.J., Walz,J., Lupas,A. and Baumeister,W.
    Structural features of archaebacterial and eukaryotic proteasomes
    Mol Biol Rep (1995) 21, 11-20. PubMed  Europe PubMed DOI
  48. [YEAR:12-5-1995]Leibovitz,D., Koch,Y., Fridkin,M., Pitzer,F., Zwickl,P., Dantes,A., Baumeister,W. and Amsterdam,A.
    Archaebacterial and eukaryotic proteasomes prefer different sites in cleaving gonadotropin-releasing hormone
    J Biol Chem (12-5-1995) 270, 11029-11032. PubMed  Europe PubMed DOI  P
  49. Lowe,J., Stock,D., Jap,B., Zwickl,P., Baumeister,W. and Huber,R.
    Crystal structure of the 20S proteasome from the archaeon T. acidophilum at 3.4 A resolution
    Science (1995) 268, 533-539. PubMed  Europe PubMed  S  I
  50. Maupin-Furlow,J.A. and Ferry,J.G.
    A proteasome from the methanogenic archaeon Methanosarcina thermophila
    J Biol Chem (1995) 270, 28617-28622. PubMed  Europe PubMed DOI
  51. Seemuller,E., Lupas,A., Stock,D., Lowe,J., Huber,R. and Baumeister,W.
    Proteasome from Thermoplasma acidophilum: a threonine protease
    Science (1995) 268, 579-582. PubMed  Europe PubMed
    52. 1994
  52. Grziwa,A., Maack,S., Puhler,G., Wiegand,G., Baumeister,W. and Jaenicke,R.
    Dissociation and reconstitution of the Thermoplasma proteasome
    Eur J Biochem (1994) 223, 1061-1067. PubMed  Europe PubMed DOI
  53. Puhler,G., Pitzer,F., Zwickl,P. and Baumeister,W.
    Proteasomes - multisubunit proteinases common to Thermoplasma and eukaryotes
    Syst Appl Microbiol (1994) 16, 734-741.
  54. Zwickl,P., Kleinz,J. and Baumeister,W.
    Critical elements in proteasome assembly
    Nat Struct Biol (1994) 1, 765-770. PubMed  Europe PubMed
    55. 1993
  55. Jap,B., Puhler,G., Lucke,H., Typke,D., Lowe,J., Stock,D., Huber,R. and Baumeister,W.
    Preliminary X-ray crystallographic study of the proteasome from Thermoplasma acidophilum
    J Mol Biol (1993) 234, 881-884. PubMed  Europe PubMed DOI  S
  56. Wenzel,T. and Baumeister,W.
    Thermoplasma acidophilum proteasomes degrade partially unfolded and ubiquitin-associated proteins
    FEBS Lett (1993) 326, 215-218. PubMed  Europe PubMed DOI
    57. 1992
  57. Dahlmann,B., Kuehn,L., Grziwa,A., Zwickl,P. and Baumeister,W.
    Biochemical properties of the proteasome from Thermoplasma acidophilum
    Eur J Biochem (1992) 208, 789-797. PubMed  Europe PubMed DOI
  58. Puhler,G., Weinkauf,S., Bachmann,L., Muller,S., Engel,A., Hegerl,R. and Baumeister,W.
    Subunit stoichiometry and three-dimensional arrangement in proteasomes from Thermoplasma acidophilum
    EMBO J (1992) 11, 1607-1616. PubMed  Europe PubMed  PMC  EPMC  S
  59. Zwickl,P., Lottspeich,F. and Baumeister,W.
    Expression of functional Thermoplasma acidophilum proteasomes in Escherichia coli
    FEBS Lett (1992) 312, 157-160. PubMed  Europe PubMed DOI
  60. Zwickl,P., Grziwa,A., Puhler,G., Dahlmann,B., Lottspeich,F. and Baumeister,W.
    Primary structure of the Thermoplasma proteasome and its implications for the structure, function, and evolution of the multicatalytic proteinase
    Biochemistry (1992) 31, 964-972. PubMed  Europe PubMed
    61. 1991
  61. Grziwa,A., Baumeister,W., Dahlmann,B. and Kopp,F.
    Localization of subunits in proteasomes from Thermoplasma acidophilum by immunoelectron microscopy
    FEBS Lett (1991) 290, 186-190. PubMed  Europe PubMed DOI

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